>gb|AC114901.8| Mus musculus chromosome 3, clone RP23-33I24, complete sequence
          Length = 168654

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 313    agatagtggtttcttttcctt 333
              |||||||||||||||||||||
Sbjct: 161531 agatagtggtttcttttcctt 161551

>gb|AC159970.4| Mus musculus chromosome 3, clone RP23-301J11, complete sequence
          Length = 191207

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 313   agatagtggtttcttttcctt 333
             |||||||||||||||||||||
Sbjct: 83051 agatagtggtttcttttcctt 83031

>emb|AL450399.16| Mouse DNA sequence from clone RP23-286I5 on chromosome X, complete
              sequence
          Length = 207922

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 327    tttccttgtagacattctgca 347
              |||||||||||||||||||||
Sbjct: 170962 tttccttgtagacattctgca 170942

>gb|BC014640.1| Homo sapiens collagen, type XIV, alpha 1 (undulin), mRNA (cDNA
           clone IMAGE:2960796), complete cds
          Length = 3479

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 78  aatggttagaggaaaagttggtgg 101
           ||||||| ||||||||||||||||
Sbjct: 325 aatggttggaggaaaagttggtgg 302

>ref|XM_519927.1| PREDICTED: Pan troglodytes similar to collagen type XIV (LOC464358),
            mRNA
          Length = 6054

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 78   aatggttagaggaaaagttggtgg 101
            ||||||| ||||||||||||||||
Sbjct: 3903 aatggttggaggaaaagttggtgg 3880

>ref|XM_514176.1| PREDICTED: Pan troglodytes similar to TNF receptor-associated
           factor 5 (LOC457711), mRNA
          Length = 1611

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 294 cattcttttctaaaaccaaa 313
           ||||||||||||||||||||
Sbjct: 886 cattcttttctaaaaccaaa 867

>ref|NM_021110.1| Homo sapiens collagen, type XIV, alpha 1 (undulin) (COL14A1), mRNA
          Length = 6463

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 78   aatggttagaggaaaagttggtgg 101
            ||||||| ||||||||||||||||
Sbjct: 3322 aatggttggaggaaaagttggtgg 3299

>ref|NM_004619.3| Homo sapiens TNF receptor-associated factor 5 (TRAF5), transcript
           variant 1, mRNA
          Length = 3988

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 294 cattcttttctaaaaccaaa 313
           ||||||||||||||||||||
Sbjct: 832 cattcttttctaaaaccaaa 813

>ref|NM_145759.2| Homo sapiens TNF receptor-associated factor 5 (TRAF5), transcript
           variant 2, mRNA
          Length = 3988

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 294 cattcttttctaaaaccaaa 313
           ||||||||||||||||||||
Sbjct: 832 cattcttttctaaaaccaaa 813

>ref|NM_001033910.1| Homo sapiens TNF receptor-associated factor 5 (TRAF5), transcript
           variant 3, mRNA
          Length = 3982

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 294 cattcttttctaaaaccaaa 313
           ||||||||||||||||||||
Sbjct: 826 cattcttttctaaaaccaaa 807

>emb|Z70681.1|CEC30F2 Caenorhabditis elegans Cosmid C30F2, complete sequence
          Length = 25282

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 10   acaaaaaataccatttgtta 29
            ||||||||||||||||||||
Sbjct: 5969 acaaaaaataccatttgtta 5988

>emb|AL590101.9| Human DNA sequence from clone RP11-318L16 on chromosome 1 Contains the
             3' end of a novel gene (FLJ10876), the TRAF5 gene for TNF
             receptor-associated factor 5, a novel gene (MGC14801), a
             sorting nexin 25 (SNX25) pseudogene and a actin related
             protein 2/3 complex, subunit 3 21kDa (ARPC3) pseudogene,
             complete sequence
          Length = 180169

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 294   cattcttttctaaaaccaaa 313
             ||||||||||||||||||||
Sbjct: 86718 cattcttttctaaaaccaaa 86699

>emb|AL136305.14| Human DNA sequence from clone RP1-259A10 on chromosome 6p22.1-23
             Contains the gene for an ssDNA binding protein and a CpG
             island, complete sequence
          Length = 150520

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 24    ttgttaattgttgtcaaaaa 43
             ||||||||||||||||||||
Sbjct: 96063 ttgttaattgttgtcaaaaa 96044

>emb|AL049594.4|HSDJ860P4 Human DNA sequence from clone RP5-860P4 on chromosome 20 Contains the
             3' end of the C20orf39 gene for chromosome 20 open reading
             frame 39, a novel gene and a CpG island, complete sequence
          Length = 156791

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 304   taaaaccaaagatagtggtt 323
             ||||||||||||||||||||
Sbjct: 70756 taaaaccaaagatagtggtt 70775

>gb|BC032830.1| Homo sapiens TNF receptor-associated factor 5, mRNA (cDNA clone
            IMAGE:4821810), complete cds
          Length = 4980

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 294  cattcttttctaaaaccaaa 313
            ||||||||||||||||||||
Sbjct: 4907 cattcttttctaaaaccaaa 4888

>gb|BC029600.1| Homo sapiens TNF receptor-associated factor 5, transcript variant
           2, mRNA (cDNA clone MGC:39780 IMAGE:5295897), complete
           cds
          Length = 1841

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 294 cattcttttctaaaaccaaa 313
           ||||||||||||||||||||
Sbjct: 832 cattcttttctaaaaccaaa 813

>gb|AC010108.6| Drosophila melanogaster 3L BAC RP98-23K9 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 167187

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 229    ttggccccttgttgttgttg 248
              ||||||||||||||||||||
Sbjct: 161515 ttggccccttgttgttgttg 161496

>gb|AC010565.6| Drosophila melanogaster 3L BAC RP98-19A3 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 159928

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 229   ttggccccttgttgttgttg 248
             ||||||||||||||||||||
Sbjct: 49256 ttggccccttgttgttgttg 49237

>emb|CR536557.1| Homo sapiens full open reading frame cDNA clone RZPDo834A0922D for
           gene TRAF5, TNF receptor-associated factor 5; complete
           cds, incl. stopcodon
          Length = 1674

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 294 cattcttttctaaaaccaaa 313
           ||||||||||||||||||||
Sbjct: 772 cattcttttctaaaaccaaa 753

>gb|AC020603.4|AC020603 Homo sapiens BAC clone RP11-534K13 from 8, complete sequence
          Length = 202317

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 78     aatggttagaggaaaagttggtgg 101
              ||||||| ||||||||||||||||
Sbjct: 100496 aatggttggaggaaaagttggtgg 100473

>gb|AC139665.7| Homo sapiens 3 BAC RP11-171J7 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 68343

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 287   tttgtgtcattcttttctaa 306
             ||||||||||||||||||||
Sbjct: 30416 tttgtgtcattcttttctaa 30397

>emb|AL157792.3|CNS01RG7 Human chromosome 14 DNA sequence BAC R-388M7 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 194760

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 9     aacaaaaaataccatttgtt 28
             ||||||||||||||||||||
Sbjct: 33243 aacaaaaaataccatttgtt 33262

>gb|AE003545.3| Drosophila melanogaster chromosome 3L, section 40 of 83 of the complete
              sequence
          Length = 282115

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 229    ttggccccttgttgttgttg 248
              ||||||||||||||||||||
Sbjct: 220114 ttggccccttgttgttgttg 220095

>gb|U69108.1|HSU69108 Homo sapiens TNF receptor associated factor 5 mRNA, partial cds
          Length = 2738

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 294 cattcttttctaaaaccaaa 313
           ||||||||||||||||||||
Sbjct: 715 cattcttttctaaaaccaaa 696

>emb|AL773530.9| Mouse DNA sequence from clone RP23-180A8 on chromosome 2, complete
              sequence
          Length = 188424

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 279    cttcatgctttgtgtcattcttttctaa 306
              |||||||||||||||  |||||||||||
Sbjct: 164338 cttcatgctttgtgtagttcttttctaa 164311

>gb|M64108.1|HUMUDU1A Human udulin 1 mRNA, 3' end
          Length = 2637

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 78   aatggttagaggaaaagttggtgg 101
            ||||||| ||||||||||||||||
Sbjct: 2496 aatggttggaggaaaagttggtgg 2473

>dbj|AB000509.1| Homo sapiens mRNA for TRAF5, complete cds
          Length = 3993

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 294 cattcttttctaaaaccaaa 313
           ||||||||||||||||||||
Sbjct: 826 cattcttttctaaaaccaaa 807


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,742,570
Number of Sequences: 3902068
Number of extensions: 4742570
Number of successful extensions: 85281
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 85244
Number of HSP's gapped (non-prelim): 37
length of query: 383
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 361
effective length of database: 17,147,199,772
effective search space: 6190139117692
effective search space used: 6190139117692
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)