ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd22n19 |
|---|---|
| Clone Library Name | barley_pub |
>TCTP_HORVU (Q9M5G3) Translationally-controlled tumor protein homolog (TCTP)| (HTP) Length = 168 Score = 80.9 bits (198), Expect = 9e-16 Identities = 39/40 (97%), Positives = 39/40 (97%) Frame = -2 Query: 121 FRLQXQPAFDKKQFIAYIKRYIKNLTAKLEGEELDAFKKN 2 FRLQ QPAFDKKQFIAYIKRYIKNLTAKLEGEELDAFKKN Sbjct: 74 FRLQEQPAFDKKQFIAYIKRYIKNLTAKLEGEELDAFKKN 113
>TCTP_SOLTU (P43349) Translationally-controlled tumor protein homolog (TCTP)| (p23) Length = 168 Score = 67.4 bits (163), Expect = 1e-11 Identities = 31/40 (77%), Positives = 35/40 (87%) Frame = -2 Query: 121 FRLQXQPAFDKKQFIAYIKRYIKNLTAKLEGEELDAFKKN 2 FRLQ QPAFDKKQF+ YIKRYIK+LT KLEGE +AFK+N Sbjct: 74 FRLQEQPAFDKKQFVTYIKRYIKSLTPKLEGEAQEAFKEN 113
>TCTP_FRAAN (O03992) Translationally-controlled tumor protein homolog (TCTP)| Length = 170 Score = 62.8 bits (151), Expect = 3e-10 Identities = 28/40 (70%), Positives = 33/40 (82%) Frame = -2 Query: 121 FRLQXQPAFDKKQFIAYIKRYIKNLTAKLEGEELDAFKKN 2 FRLQ QP FDKKQF+ ++KRYIK LT KLEGE+ + FKKN Sbjct: 76 FRLQEQPPFDKKQFVTWVKRYIKLLTPKLEGEQQETFKKN 115
>TCTP_ORYSA (P35681) Translationally-controlled tumor protein homolog (TCTP)| Length = 168 Score = 62.0 bits (149), Expect = 4e-10 Identities = 27/40 (67%), Positives = 34/40 (85%) Frame = -2 Query: 121 FRLQXQPAFDKKQFIAYIKRYIKNLTAKLEGEELDAFKKN 2 FRLQ QP FDKKQF+ ++KRYIKNL+AKL+ E+ + FKKN Sbjct: 74 FRLQEQPPFDKKQFVTFMKRYIKNLSAKLDAEKQEEFKKN 113
>TCTP_TOBAC (Q9XHL7) Translationally-controlled tumor protein homolog (TCTP)| Length = 168 Score = 61.2 bits (147), Expect = 7e-10 Identities = 27/40 (67%), Positives = 33/40 (82%) Frame = -2 Query: 121 FRLQXQPAFDKKQFIAYIKRYIKNLTAKLEGEELDAFKKN 2 FRLQ QP+FDKKQF+AY+K+YIKNLT KL E+ + FK N Sbjct: 74 FRLQEQPSFDKKQFVAYMKKYIKNLTPKLGAEQEEVFKNN 113
>TCTP_SOYBN (Q944T2) Translationally-controlled tumor protein homolog (TCTP)| Length = 168 Score = 60.5 bits (145), Expect = 1e-09 Identities = 26/40 (65%), Positives = 34/40 (85%) Frame = -2 Query: 121 FRLQXQPAFDKKQFIAYIKRYIKNLTAKLEGEELDAFKKN 2 FRLQ QPAFDKKQF+ ++KR+IKNLT KL+ E+ + FKK+ Sbjct: 74 FRLQEQPAFDKKQFVTFMKRFIKNLTPKLDAEQQELFKKH 113
>TCTP_HEVBR (Q9ZSW9) Translationally-controlled tumor protein homolog (TCTP)| Length = 168 Score = 60.1 bits (144), Expect = 2e-09 Identities = 27/40 (67%), Positives = 34/40 (85%) Frame = -2 Query: 121 FRLQXQPAFDKKQFIAYIKRYIKNLTAKLEGEELDAFKKN 2 FRLQ QPAFDKKQF+ Y+KR+IK LT KL+ E+ ++FKKN Sbjct: 74 FRLQEQPAFDKKQFVTYMKRFIKLLTPKLDEEKQESFKKN 113
>TCTP_MEDSA (P28014) Translationally-controlled tumor protein homolog (TCTP)| Length = 167 Score = 58.5 bits (140), Expect = 5e-09 Identities = 26/40 (65%), Positives = 33/40 (82%) Frame = -2 Query: 121 FRLQXQPAFDKKQFIAYIKRYIKNLTAKLEGEELDAFKKN 2 FRLQ QPAFDKKQF+ ++KRYIK LT KL+ E+ + FKK+ Sbjct: 73 FRLQEQPAFDKKQFLGFVKRYIKLLTPKLDAEKQELFKKH 112
>TCTP_PEA (P50906) Translationally-controlled tumor protein homolog (TCTP)| (23 kDa callus protein) (p23) (PsRCI22-3) Length = 167 Score = 58.2 bits (139), Expect = 6e-09 Identities = 26/40 (65%), Positives = 32/40 (80%) Frame = -2 Query: 121 FRLQXQPAFDKKQFIAYIKRYIKNLTAKLEGEELDAFKKN 2 FRLQ QP FDKKQF+ ++K+YIK LT KLE E+ + FKKN Sbjct: 73 FRLQEQPPFDKKQFLGFVKKYIKLLTPKLEAEKQEHFKKN 112
>TCTP_PSEMZ (Q9ZRX0) Translationally-controlled tumor protein homolog (TCTP)| Length = 167 Score = 57.4 bits (137), Expect = 1e-08 Identities = 27/40 (67%), Positives = 29/40 (72%) Frame = -2 Query: 121 FRLQXQPAFDKKQFIAYIKRYIKNLTAKLEGEELDAFKKN 2 FRLQ QP FDKKQF+ +IKRYIKNL KL E FKKN Sbjct: 73 FRLQEQPPFDKKQFLGFIKRYIKNLATKLSEERQAEFKKN 112
>TCTP_BRAOL (Q944W6) Translationally-controlled tumor protein homolog (TCTP)| Length = 168 Score = 54.3 bits (129), Expect = 9e-08 Identities = 26/39 (66%), Positives = 30/39 (76%) Frame = -2 Query: 121 FRLQXQPAFDKKQFIAYIKRYIKNLTAKLEGEELDAFKK 5 FRLQ QP +DKK FIAYIK+YIK LT KL E+ + FKK Sbjct: 74 FRLQEQPTYDKKGFIAYIKKYIKLLTPKLTPEQQEEFKK 112
>TCTP_ARATH (P31265) Translationally-controlled tumor protein homolog (TCTP)| Length = 168 Score = 53.5 bits (127), Expect = 2e-07 Identities = 26/39 (66%), Positives = 29/39 (74%) Frame = -2 Query: 121 FRLQXQPAFDKKQFIAYIKRYIKNLTAKLEGEELDAFKK 5 FRLQ QP +DKK FIAYIK+YIK LT KL E+ FKK Sbjct: 74 FRLQEQPTYDKKGFIAYIKKYIKLLTPKLSEEDQAVFKK 112
>TCTP_CUCME (Q9M5I8) Translationally-controlled tumor protein homolog (TCTP)| Length = 168 Score = 50.8 bits (120), Expect = 1e-06 Identities = 23/38 (60%), Positives = 30/38 (78%) Frame = -2 Query: 121 FRLQXQPAFDKKQFIAYIKRYIKNLTAKLEGEELDAFK 8 FRLQ QP+ DKK F++ IK+YIK LT L+GE+ +AFK Sbjct: 74 FRLQEQPSMDKKVFLSCIKKYIKKLTPLLQGEQQEAFK 111
>TCTP_YEAST (P35691) Translationally-controlled tumor protein homolog (TCTP)| Length = 167 Score = 40.4 bits (93), Expect = 0.001 Identities = 23/44 (52%), Positives = 30/44 (68%), Gaps = 3/44 (6%) Frame = -2 Query: 127 YXFRLQXQPAFDKKQFIAYIKRYIKNLTAKLE---GEELDAFKK 5 + FRLQ Q AFDKK F+ YIK Y+K + AKL+ EE+ F+K Sbjct: 69 HSFRLQ-QTAFDKKSFLTYIKGYMKAVKAKLQETNPEEVPKFEK 111
>TCTP_SCHPO (Q10344) Translationally-controlled tumor protein homolog (TCTP)| (p23fyp) Length = 168 Score = 35.8 bits (81), Expect = 0.033 Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 3/45 (6%) Frame = -2 Query: 127 YXFRLQXQPAFDKKQFIAYIKRYIKNLTAKLE---GEELDAFKKN 2 Y FRL +FDKK +++YIK Y+K + A+L+ E + F+KN Sbjct: 70 YSFRLS-PTSFDKKSYMSYIKGYMKAIKARLQESNPERVPVFEKN 113
>TCTP_PLUXY (Q60FS1) Translationally-controlled tumor protein homolog (TCTP)| Length = 172 Score = 34.3 bits (77), Expect = 0.097 Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 4/43 (9%) Frame = -2 Query: 118 RLQXQPAF-DKKQFIAYIKRYIKNLTAKLE---GEELDAFKKN 2 RL AF DKK + Y+K Y+K L AKLE +++D FK N Sbjct: 73 RLMETYAFGDKKSYTLYLKDYMKKLVAKLEETAPDQVDVFKTN 115
>TCTP_DROYA (Q6XIN1) Translationally-controlled tumor protein homolog (TCTP)| Length = 172 Score = 33.5 bits (75), Expect = 0.17 Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 4/43 (9%) Frame = -2 Query: 118 RLQXQPAF-DKKQFIAYIKRYIKNLTAKLE---GEELDAFKKN 2 RLQ AF DKK + Y+K Y+K + AKLE +++D FK N Sbjct: 73 RLQECFAFGDKKSYTLYLKDYMKKVLAKLEEKSPDQVDVFKTN 115
>TCTP_ANOGA (Q7QCK2) Translationally-controlled tumor protein homolog (TCTP)| Length = 171 Score = 33.5 bits (75), Expect = 0.17 Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 3/34 (8%) Frame = -2 Query: 94 DKKQFIAYIKRYIKNLTAKLEGE---ELDAFKKN 2 DKKQF Y+K Y+K L +LE + E++ FK N Sbjct: 81 DKKQFTTYLKDYMKKLVTRLEEKSPGEVEVFKTN 114
>TCTP_LONON (Q5MGM6) Translationally-controlled tumor protein homolog (TCTP)| Length = 172 Score = 33.1 bits (74), Expect = 0.22 Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 3/34 (8%) Frame = -2 Query: 94 DKKQFIAYIKRYIKNLTAKLE---GEELDAFKKN 2 DKK + Y+K Y+K L AKLE +++D FK N Sbjct: 82 DKKSYTLYLKDYMKKLVAKLEEKAPDQVDIFKTN 115
>TCTP_DROME (Q9VGS2) Translationally-controlled tumor protein homolog (TCTP)| Length = 172 Score = 31.6 bits (70), Expect = 0.63 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 3/34 (8%) Frame = -2 Query: 94 DKKQFIAYIKRYIKNLTAKLE---GEELDAFKKN 2 DKK + Y+K Y+K + AKLE +++D FK N Sbjct: 82 DKKSYTLYLKDYMKKVLAKLEEKSPDQVDIFKTN 115
>TCTP_LABRO (Q98SJ7) Translationally-controlled tumor protein (TCTP)| Length = 171 Score = 31.2 bits (69), Expect = 0.82 Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 3/38 (7%) Frame = -2 Query: 106 QPAFDKKQFIAYIKRYIKNLTAKLE---GEELDAFKKN 2 + ++DKK + AYIK Y+K + AKL+ + +D F N Sbjct: 79 ETSYDKKSYTAYIKDYMKAVKAKLQEVAPDRVDPFMAN 116
>TCTP_LATJA (Q6XSH4) Translationally-controlled tumor protein (TCTP)| Length = 170 Score = 31.2 bits (69), Expect = 0.82 Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 3/35 (8%) Frame = -2 Query: 106 QPAFDKKQFIAYIKRYIKNLTAKLEGEE---LDAF 11 + +FDKK + YIK Y+K + KL+ E+ +DAF Sbjct: 78 ETSFDKKSYKVYIKDYVKAIKQKLQEEKPERVDAF 112
>TCTP_BRARE (Q9DGK4) Translationally-controlled tumor protein (TCTP)| Length = 171 Score = 30.4 bits (67), Expect = 1.4 Identities = 12/25 (48%), Positives = 19/25 (76%) Frame = -2 Query: 106 QPAFDKKQFIAYIKRYIKNLTAKLE 32 + ++DKK + AYIK Y+K + AKL+ Sbjct: 79 ETSYDKKSYTAYIKDYMKAVKAKLQ 103
>TCTP_PLAF7 (Q8I3Z5) Translationally-controlled tumor protein homolog (TCTP)| Length = 171 Score = 28.5 bits (62), Expect = 5.3 Identities = 12/28 (42%), Positives = 19/28 (67%) Frame = -2 Query: 100 AFDKKQFIAYIKRYIKNLTAKLEGEELD 17 AF KK++ AYIK Y++ + LE ++ D Sbjct: 81 AFSKKEYSAYIKNYMQKVAKYLEEKKPD 108
>TCTP_SCHJA (P91800) Translationally-controlled tumor protein homolog (TCTP)| Length = 169 Score = 28.5 bits (62), Expect = 5.3 Identities = 11/25 (44%), Positives = 18/25 (72%) Frame = -2 Query: 100 AFDKKQFIAYIKRYIKNLTAKLEGE 26 +FDKK + AY+K Y+K + +L+ E Sbjct: 79 SFDKKSYRAYLKGYLKAIKERLQKE 103
>TCTP_CAEEL (Q93573) Translationally-controlled tumor protein homolog (TCTP)| Length = 181 Score = 27.7 bits (60), Expect = 9.1 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 5/35 (14%) Frame = -2 Query: 94 DKKQFIAYIKRYIKNLTAKLEGE-----ELDAFKK 5 D F AYIK+++KN+ +E ++DAFKK Sbjct: 84 DASMFKAYIKKFMKNVIDHMEKNNRDKADVDAFKK 118 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 12,700,801 Number of Sequences: 219361 Number of extensions: 111416 Number of successful extensions: 325 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 324 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 325 length of database: 80,573,946 effective HSP length: 24 effective length of database: 75,309,282 effective search space used: 1807422768 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
