Clone Name | rbasd22n19 |
---|---|
Clone Library Name | barley_pub |
>gb|AF230786.1|AF230786 Hordeum vulgare human tumor protein-like protein mRNA, complete cds Length = 778 Score = 254 bits (128), Expect = 6e-65 Identities = 141/145 (97%), Gaps = 1/145 (0%) Strand = Plus / Minus Query: 1 cgttcttcttgaaagcatctagctcctcaccttcaagcttggcagtgaggttcttgatgt 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 418 cgttcttcttgaaagcatctagctcctcaccttcaagcttggcagtgaggttcttgatgt 359 Query: 61 ancgcttgatgtaagcaataaactgcttcttgtcaaaagcaggttgctnctgaagacgga 120 | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 358 agcgcttgatgtaagcaataaactgcttcttgtcaaaagcaggttgctcctgaagacgga 299 Query: 121 aggngt-aacaatgtcaaccacctt 144 ||| || |||||||||||||||||| Sbjct: 298 aggtgtcaacaatgtcaaccacctt 274
>gb|AF508970.1| Triticum aestivum translationally controlled tumor protein mRNA, complete cds Length = 779 Score = 178 bits (90), Expect = 3e-42 Identities = 130/143 (90%), Gaps = 1/143 (0%) Strand = Plus / Minus Query: 3 ttcttcttgaaagcatctagctcctcaccttcaagcttggcagtgaggttcttgatgtan 62 |||||||||||| ||||||| || || |||||||||||||||| ||||||||||||||| Sbjct: 374 ttcttcttgaaaacatctaggtcatccccttcaagcttggcagagaggttcttgatgtag 315 Query: 63 cgcttgatgtaagcaataaactgcttcttgtcaaaagcaggttgctnctgaagacggaag 122 ||||| |||| || ||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 314 cgcttcatgtgagagataaactgcttcttgtcaaaagcaggttgctcctgaagacggaag 255 Query: 123 gngt-aacaatgtcaaccacctt 144 | || |||||||||||||||||| Sbjct: 254 gtgtcaacaatgtcaaccacctt 232
>dbj|AK105453.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-125-C05, full insert sequence Length = 970 Score = 97.6 bits (49), Expect = 9e-18 Identities = 95/110 (86%), Gaps = 1/110 (0%) Strand = Plus / Minus Query: 36 agcttggcagtgaggttcttgatgtancgcttgatgtaagcaataaactgcttcttgtca 95 |||||||| | ||||||||||||||| ||||| ||| | | | |||||||||||||||| Sbjct: 417 agcttggcggagaggttcttgatgtagcgcttcatgaaggtcacaaactgcttcttgtca 358 Query: 96 aaagcaggttgctnctgaagacggaaggngt-aacaatgtcaaccacctt 144 |||| |||||||| |||||||||||||| || |||||||| |||||||| Sbjct: 357 aaaggaggttgctcctgaagacggaaggtgtccacaatgtcgaccacctt 308
>dbj|D12626.1|RIC21KDP Oryza sativa (japonica cultivar-group) mRNA for 21kd polypeptide, complete cds Length = 786 Score = 97.6 bits (49), Expect = 9e-18 Identities = 95/110 (86%), Gaps = 1/110 (0%) Strand = Plus / Minus Query: 36 agcttggcagtgaggttcttgatgtancgcttgatgtaagcaataaactgcttcttgtca 95 |||||||| | ||||||||||||||| ||||| ||| | | | |||||||||||||||| Sbjct: 382 agcttggcggagaggttcttgatgtagcgcttcatgaaggtcacaaactgcttcttgtca 323 Query: 96 aaagcaggttgctnctgaagacggaaggngt-aacaatgtcaaccacctt 144 |||| |||||||| |||||||||||||| || |||||||| |||||||| Sbjct: 322 aaaggaggttgctcctgaagacggaaggtgtccacaatgtcgaccacctt 273
>gb|DQ191671.1| Solanum tuberosum P23-like protein mRNA, complete cds Length = 819 Score = 71.9 bits (36), Expect = 5e-10 Identities = 73/86 (84%) Strand = Plus / Minus Query: 30 ccttcaagcttggcagtgaggttcttgatgtancgcttgatgtaagcaataaactgcttc 89 ||||| ||||||| || |||||||||||||| | ||| ||||| | || ||| || ||| Sbjct: 411 ccttctagcttgggtgtcaggttcttgatgtatctcttaatgtaggtaacaaattgtttc 352 Query: 90 ttgtcaaaagcaggttgctnctgaag 115 ||||||||||||||||||| |||||| Sbjct: 351 ttgtcaaaagcaggttgctcctgaag 326
>gb|DQ191649.1| Solanum tuberosum P23 tumor protein-like protein mRNA, complete cds Length = 784 Score = 71.9 bits (36), Expect = 5e-10 Identities = 73/86 (84%) Strand = Plus / Minus Query: 30 ccttcaagcttggcagtgaggttcttgatgtancgcttgatgtaagcaataaactgcttc 89 ||||| ||||||| || |||||||||||||| | ||| ||||| | || ||| || ||| Sbjct: 379 ccttctagcttgggtgtcaggttcttgatgtatctcttaatgtaggtaacaaattgtttc 320 Query: 90 ttgtcaaaagcaggttgctnctgaag 115 ||||||||||||||||||| |||||| Sbjct: 319 ttgtcaaaagcaggttgctcctgaag 294
>gb|DQ191623.1| Solanum tuberosum P23 tumor protein-like protein mRNA, complete cds Length = 787 Score = 71.9 bits (36), Expect = 5e-10 Identities = 73/86 (84%) Strand = Plus / Minus Query: 30 ccttcaagcttggcagtgaggttcttgatgtancgcttgatgtaagcaataaactgcttc 89 ||||| ||||||| || |||||||||||||| | ||| ||||| | || ||| || ||| Sbjct: 382 ccttctagcttgggtgtcaggttcttgatgtatctcttaatgtaggtaacaaattgtttc 323 Query: 90 ttgtcaaaagcaggttgctnctgaag 115 ||||||||||||||||||| |||||| Sbjct: 322 ttgtcaaaagcaggttgctcctgaag 297
>gb|AC108870.2| Oryza sativa (japonica cultivar-group) chromosome 11 PAC clone P0682E05, complete sequence Length = 162223 Score = 69.9 bits (35), Expect = 2e-09 Identities = 66/77 (85%) Strand = Plus / Plus Query: 36 agcttggcagtgaggttcttgatgtancgcttgatgtaagcaataaactgcttcttgtca 95 |||||||| | ||||||||||||||| ||||| ||| | | | |||||||||||||||| Sbjct: 133445 agcttggcggagaggttcttgatgtagcgcttcatgaaggtcacaaactgcttcttgtca 133504 Query: 96 aaagcaggttgctnctg 112 |||| |||||||| ||| Sbjct: 133505 aaaggaggttgctcctg 133521
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 69.9 bits (35), Expect = 2e-09 Identities = 66/77 (85%) Strand = Plus / Plus Query: 36 agcttggcagtgaggttcttgatgtancgcttgatgtaagcaataaactgcttcttgtca 95 |||||||| | ||||||||||||||| ||||| ||| | | | |||||||||||||||| Sbjct: 25643398 agcttggcggagaggttcttgatgtagcgcttcatgaaggtcacaaactgcttcttgtca 25643457 Query: 96 aaagcaggttgctnctg 112 |||| |||||||| ||| Sbjct: 25643458 aaaggaggttgctcctg 25643474
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 69.9 bits (35), Expect = 2e-09 Identities = 66/77 (85%) Strand = Plus / Plus Query: 36 agcttggcagtgaggttcttgatgtancgcttgatgtaagcaataaactgcttcttgtca 95 |||||||| | ||||||||||||||| ||||| ||| | | | |||||||||||||||| Sbjct: 25962068 agcttggcggagaggttcttgatgtagcgcttcatgaaggtcacaaactgcttcttgtca 25962127 Query: 96 aaagcaggttgctnctg 112 |||| |||||||| ||| Sbjct: 25962128 aaaggaggttgctcctg 25962144
>gb|AF107842.1|AF107842 Nicotiana tabacum putative translationally controlled tumor protein (TCTP1) mRNA, complete cds Length = 703 Score = 67.9 bits (34), Expect = 8e-09 Identities = 59/68 (86%) Strand = Plus / Minus Query: 48 aggttcttgatgtancgcttgatgtaagcaataaactgcttcttgtcaaaagcaggttgc 107 ||||||||||| || ||| ||||| |||| |||||||||||||||||||| ||||||| Sbjct: 293 aggttcttgatatatttcttcatgtaggcaacaaactgcttcttgtcaaaagaaggttgc 234 Query: 108 tnctgaag 115 | |||||| Sbjct: 233 tcctgaag 226
>gb|DQ235166.1| Solanum tuberosum clone 153H07 P23 tumor protein-like mRNA, complete cds Length = 834 Score = 63.9 bits (32), Expect = 1e-07 Identities = 72/86 (83%) Strand = Plus / Minus Query: 30 ccttcaagcttggcagtgaggttcttgatgtancgcttgatgtaagcaataaactgcttc 89 ||||| ||||||| || |||||||||||||| | ||| ||||| | || ||| || ||| Sbjct: 382 ccttctagcttgggtgtcaggttcttgatgtatctcttaatgtaggtaacaaattgtttc 323 Query: 90 ttgtcaaaagcaggttgctnctgaag 115 ||||| ||||||||||||| |||||| Sbjct: 322 ttgtcgaaagcaggttgctcctgaag 297
>gb|DQ207879.1| Solanum tuberosum clone 096G01 P23 tumor protein-like mRNA, complete cds Length = 794 Score = 63.9 bits (32), Expect = 1e-07 Identities = 72/86 (83%) Strand = Plus / Minus Query: 30 ccttcaagcttggcagtgaggttcttgatgtancgcttgatgtaagcaataaactgcttc 89 ||||| ||||||| || |||||||||||||| | ||| ||||| | || ||| || ||| Sbjct: 390 ccttctagcttgggtgtcaggttcttgatgtatctcttaatgtaggtaacaaattgtttc 331 Query: 90 ttgtcaaaagcaggttgctnctgaag 115 ||||| ||||||||||||| |||||| Sbjct: 330 ttgtcgaaagcaggttgctcctgaag 305
>gb|AY642284.1| Lycopersicon esculentum translationally controlled tumor protein-like protein mRNA, complete cds Length = 910 Score = 63.9 bits (32), Expect = 1e-07 Identities = 72/86 (83%) Strand = Plus / Minus Query: 30 ccttcaagcttggcagtgaggttcttgatgtancgcttgatgtaagcaataaactgcttc 89 ||||| ||||||| || |||||||||||||| | ||| ||| | | || ||| || ||| Sbjct: 413 ccttctagcttgggtgtcaggttcttgatgtatctcttcatgaaggtaacaaattgtttc 354 Query: 90 ttgtcaaaagcaggttgctnctgaag 115 ||||||||||||||||||| |||||| Sbjct: 353 ttgtcaaaagcaggttgctcctgaag 328
>gb|BT012762.1| Lycopersicon esculentum clone 113708R, mRNA sequence Length = 863 Score = 63.9 bits (32), Expect = 1e-07 Identities = 72/86 (83%) Strand = Plus / Minus Query: 30 ccttcaagcttggcagtgaggttcttgatgtancgcttgatgtaagcaataaactgcttc 89 ||||| ||||||| || |||||||||||||| | ||| ||| | | || ||| || ||| Sbjct: 394 ccttctagcttgggtgtcaggttcttgatgtatctcttcatgaaggtaacaaattgtttc 335 Query: 90 ttgtcaaaagcaggttgctnctgaag 115 ||||||||||||||||||| |||||| Sbjct: 334 ttgtcaaaagcaggttgctcctgaag 309
>gb|AY488171.1| Capsicum annuum P23 tumor protein-like protein mRNA, complete cds Length = 615 Score = 63.9 bits (32), Expect = 1e-07 Identities = 72/86 (83%) Strand = Plus / Minus Query: 30 ccttcaagcttggcagtgaggttcttgatgtancgcttgatgtaagcaataaactgcttc 89 ||||| ||||||| || |||||||||||||| ||||||||| ||| |||| |||| Sbjct: 339 ccttctagcttgggtgtcaggttcttgatgtatttcttgatgtatccaacaaaccccttc 280 Query: 90 ttgtcaaaagcaggttgctnctgaag 115 |||||||||| |||||||| |||||| Sbjct: 279 ttgtcaaaagaaggttgctcctgaag 254
>gb|DQ241847.1| Solanum tuberosum clone 186H01 P23 tumor protein-like mRNA, complete cds Length = 795 Score = 63.9 bits (32), Expect = 1e-07 Identities = 72/86 (83%) Strand = Plus / Minus Query: 30 ccttcaagcttggcagtgaggttcttgatgtancgcttgatgtaagcaataaactgcttc 89 ||||| ||||||| || |||||||||||||| | ||| ||||| | || ||| || ||| Sbjct: 371 ccttctagcttgggtgtcaggttcttgatgtatctcttaatgtaggtaacaaattgtttc 312 Query: 90 ttgtcaaaagcaggttgctnctgaag 115 ||||| ||||||||||||| |||||| Sbjct: 311 ttgtcgaaagcaggttgctcctgaag 286
>gb|AY496129.1| Capsicum annuum unknown mRNA Length = 540 Score = 60.0 bits (30), Expect = 2e-06 Identities = 58/68 (85%) Strand = Plus / Minus Query: 48 aggttcttgatgtancgcttgatgtaagcaataaactgcttcttgtcaaaagcaggttgc 107 |||||||||||||| |||||||||| ||| ||| |||||||||||||| ||||||| Sbjct: 140 aggttcttgatgtatttcttgatgtaaccaacaaatcccttcttgtcaaaagaaggttgc 81 Query: 108 tnctgaag 115 | |||||| Sbjct: 80 tcctgaag 73
>gb|AF091455.1|AF091455 Hevea brasiliensis translationally controlled tumor protein (TCTP) mRNA, complete cds Length = 837 Score = 60.0 bits (30), Expect = 2e-06 Identities = 32/33 (96%) Strand = Plus / Minus Query: 80 aaactgcttcttgtcaaaagcaggttgctnctg 112 ||||||||||||||||||||||||||||| ||| Sbjct: 329 aaactgcttcttgtcaaaagcaggttgctcctg 297
>gb|DQ323740.1| Hevea brasiliensis translationally controlled tumor protein (TCTP) mRNA, complete cds Length = 670 Score = 60.0 bits (30), Expect = 2e-06 Identities = 32/33 (96%) Strand = Plus / Minus Query: 80 aaactgcttcttgtcaaaagcaggttgctnctg 112 ||||||||||||||||||||||||||||| ||| Sbjct: 329 aaactgcttcttgtcaaaagcaggttgctcctg 297
>gb|DQ306731.1| Hevea brasiliensis isolate SSH2 mRNA sequence Length = 520 Score = 60.0 bits (30), Expect = 2e-06 Identities = 32/33 (96%) Strand = Plus / Plus Query: 80 aaactgcttcttgtcaaaagcaggttgctnctg 112 ||||||||||||||||||||||||||||| ||| Sbjct: 212 aaactgcttcttgtcaaaagcaggttgctcctg 244
>gb|BT017017.1| Zea mays clone EK07D2312A12.c mRNA sequence Length = 788 Score = 58.0 bits (29), Expect = 8e-06 Identities = 52/59 (88%), Gaps = 1/59 (1%) Strand = Plus / Minus Query: 87 ttcttgtcaaaagcaggttgctnctgaagacggaaggngt-aacaatgtcaaccacctt 144 ||||||||||||| |||||||| ||| |||||||| | || |||||| ||||||||||| Sbjct: 319 ttcttgtcaaaaggaggttgctcctgtagacggaatgtgtcaacaatatcaaccacctt 261
>gb|BT016182.1| Zea mays clone Contig15 mRNA sequence Length = 828 Score = 58.0 bits (29), Expect = 8e-06 Identities = 52/59 (88%), Gaps = 1/59 (1%) Strand = Plus / Minus Query: 87 ttcttgtcaaaagcaggttgctnctgaagacggaaggngt-aacaatgtcaaccacctt 144 ||||||||||||| |||||||| ||| |||||||| | || |||||| ||||||||||| Sbjct: 347 ttcttgtcaaaaggaggttgctcctgtagacggaatgtgtcaacaatatcaaccacctt 289
>gb|AF548024.1| Zea mays translationally controlled tumor protein-like protein (TCTP) mRNA, complete cds Length = 504 Score = 58.0 bits (29), Expect = 8e-06 Identities = 52/59 (88%), Gaps = 1/59 (1%) Strand = Plus / Minus Query: 87 ttcttgtcaaaagcaggttgctnctgaagacggaaggngt-aacaatgtcaaccacctt 144 ||||||||||||| |||||||| ||| |||||||| | || |||||| ||||||||||| Sbjct: 251 ttcttgtcaaaaggaggttgctcctgtagacggaatgtgtcaacaatatcaaccacctt 193
>emb|X98618.1|MSTCTPHOM M.sativa mRNA for TCTP-like protein Length = 695 Score = 58.0 bits (29), Expect = 8e-06 Identities = 34/36 (94%) Strand = Plus / Minus Query: 80 aaactgcttcttgtcaaaagcaggttgctnctgaag 115 ||||||||||||||||||||||||||| | |||||| Sbjct: 304 aaactgcttcttgtcaaaagcaggttgttcctgaag 269
>emb|X63872.1|MSTCTPMR M.sativa mRNA for translationally controlled tumor protein (partial) Length = 725 Score = 58.0 bits (29), Expect = 8e-06 Identities = 34/36 (94%) Strand = Plus / Minus Query: 80 aaactgcttcttgtcaaaagcaggttgctnctgaag 115 ||||||||||||||||||||||||||| | |||||| Sbjct: 228 aaactgcttcttgtcaaaagcaggttgttcctgaag 193
>gb|AY103653.1| Zea mays PCO087824 mRNA sequence Length = 846 Score = 58.0 bits (29), Expect = 8e-06 Identities = 52/59 (88%), Gaps = 1/59 (1%) Strand = Plus / Minus Query: 87 ttcttgtcaaaagcaggttgctnctgaagacggaaggngt-aacaatgtcaaccacctt 144 ||||||||||||| |||||||| ||| |||||||| | || |||||| ||||||||||| Sbjct: 322 ttcttgtcaaaaggaggttgctcctgtagacggaatgtgtcaacaatatcaaccacctt 264
>emb|Z86091.1|FXATCTP Fragaria x ananassa mRNA for TCTP protein Length = 815 Score = 56.0 bits (28), Expect = 3e-05 Identities = 57/66 (86%), Gaps = 1/66 (1%) Strand = Plus / Minus Query: 80 aaactgcttcttgtcaaaagcaggttgctnctgaagacggaaggngt-aacaatgtcaac 138 |||||||||||| ||||| | |||||||| ||| || | ||||| || |||||||||||| Sbjct: 418 aaactgcttcttatcaaatggaggttgctcctggagtctgaaggtgtcaacaatgtcaac 359 Query: 139 cacctt 144 |||||| Sbjct: 358 cacctt 353
>emb|Z37160.1|SHP23H S.tuberosum mRNA encoding homolog to human P23 tumor protein Length = 795 Score = 56.0 bits (28), Expect = 3e-05 Identities = 71/86 (82%) Strand = Plus / Minus Query: 30 ccttcaagcttggcagtgaggttcttgatgtancgcttgatgtaagcaataaactgcttc 89 ||||| ||||||| || ||| |||||||||| | ||| ||||| | || ||| || ||| Sbjct: 372 ccttctagcttgggtgtcaggctcttgatgtatctcttaatgtaggtaacaaattgtttc 313 Query: 90 ttgtcaaaagcaggttgctnctgaag 115 ||||| ||||||||||||| |||||| Sbjct: 312 ttgtcgaaagcaggttgctcctgaag 287
>gb|AF230211.1|AF230211 Cucumis melo translationally controlled tumor protein-related protein mRNA, complete cds Length = 824 Score = 54.0 bits (27), Expect = 1e-04 Identities = 41/45 (91%), Gaps = 1/45 (2%) Strand = Plus / Minus Query: 101 aggttgctnctgaagacggaaggngt-aacaatgtcaaccacctt 144 |||||||| |||||||||||||| || ||||||||| |||||||| Sbjct: 306 aggttgctcctgaagacggaaggtgtcaacaatgtcgaccacctt 262
>gb|AC141436.17| Medicago truncatula clone mth2-31k19, complete sequence Length = 112268 Score = 50.1 bits (25), Expect = 0.002 Identities = 33/36 (91%) Strand = Plus / Plus Query: 80 aaactgcttcttgtcaaaagcaggttgctnctgaag 115 |||||||||||||||||||||| |||| | |||||| Sbjct: 102746 aaactgcttcttgtcaaaagcaagttgttcctgaag 102781
>gb|AC139706.8| Medicago truncatula clone mth2-28n21, complete sequence Length = 106244 Score = 50.1 bits (25), Expect = 0.002 Identities = 33/36 (91%) Strand = Plus / Minus Query: 80 aaactgcttcttgtcaaaagcaggttgctnctgaag 115 |||||||||||||||||||||| |||| | |||||| Sbjct: 3511 aaactgcttcttgtcaaaagcaagttgttcctgaag 3476
>gb|L47968.1|PEACPP23 Pisum sativum (clone PsRCI22-3) callus protein P23 mRNA, complete cds Length = 700 Score = 50.1 bits (25), Expect = 0.002 Identities = 33/36 (91%) Strand = Plus / Minus Query: 80 aaactgcttcttgtcaaaagcaggttgctnctgaag 115 |||||||||||||||||||| |||||| | |||||| Sbjct: 328 aaactgcttcttgtcaaaaggaggttgttcctgaag 293
>gb|DQ304537.1| Cucurbita maxima translationally controlled tumor protein mRNA, complete cds Length = 892 Score = 46.1 bits (23), Expect = 0.029 Identities = 64/77 (83%), Gaps = 1/77 (1%) Strand = Plus / Minus Query: 69 atgtaagcaataaactgcttcttgtcaaaagcaggttgctnctgaagacggaaggngta- 127 ||||| ||||| || ||||||||||| | | |||||||| |||||| | ||||| || Sbjct: 389 atgtatgcaatgaattgcttcttgtccatggtaggttgctcctgaagcctgaaggtgtcg 330 Query: 128 acaatgtcaaccacctt 144 ||||||||||||||||| Sbjct: 329 acaatgtcaaccacctt 313
>gb|AC007945.3|AC007945 Genomic sequence for Arabidopsis thaliana BAC F28C11 from chromosome I, complete sequence Length = 80472 Score = 44.1 bits (22), Expect = 0.11 Identities = 22/22 (100%) Strand = Plus / Minus Query: 80 aaactgcttcttgtcaaaagca 101 |||||||||||||||||||||| Sbjct: 72785 aaactgcttcttgtcaaaagca 72764
>gb|AC005990.1|F5O8 Arabidopsis thaliana chromosome 1 BAC F5O8 sequence, complete sequence Length = 99923 Score = 44.1 bits (22), Expect = 0.11 Identities = 22/22 (100%) Strand = Plus / Minus Query: 80 aaactgcttcttgtcaaaagca 101 |||||||||||||||||||||| Sbjct: 43094 aaactgcttcttgtcaaaagca 43073
>ref|NM_138809.3| Homo sapiens similar to mouse 2310016A09Rik gene (LOC134147), mRNA Length = 4047 Score = 42.1 bits (21), Expect = 0.45 Identities = 21/21 (100%) Strand = Plus / Minus Query: 70 tgtaagcaataaactgcttct 90 ||||||||||||||||||||| Sbjct: 2971 tgtaagcaataaactgcttct 2951
>emb|BX072551.7| Zebrafish DNA sequence from clone CH211-117G17 in linkage group 17, complete sequence Length = 164264 Score = 42.1 bits (21), Expect = 0.45 Identities = 21/21 (100%) Strand = Plus / Minus Query: 81 aactgcttcttgtcaaaagca 101 ||||||||||||||||||||| Sbjct: 13167 aactgcttcttgtcaaaagca 13147
>gb|AC034241.4| Homo sapiens chromosome 5 clone CTD-2360O20, complete sequence Length = 77702 Score = 42.1 bits (21), Expect = 0.45 Identities = 21/21 (100%) Strand = Plus / Minus Query: 70 tgtaagcaataaactgcttct 90 ||||||||||||||||||||| Sbjct: 56614 tgtaagcaataaactgcttct 56594
>gb|AC012640.12| Homo sapiens chromosome 5 clone CTD-2256P15, complete sequence Length = 145122 Score = 42.1 bits (21), Expect = 0.45 Identities = 21/21 (100%) Strand = Plus / Minus Query: 70 tgtaagcaataaactgcttct 90 ||||||||||||||||||||| Sbjct: 101095 tgtaagcaataaactgcttct 101075
>dbj|AK111285.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-180-H08, full insert sequence Length = 1057 Score = 42.1 bits (21), Expect = 0.45 Identities = 29/32 (90%) Strand = Plus / Minus Query: 36 agcttggcagtgaggttcttgatgtancgctt 67 |||||||| | ||||||||||||||| ||||| Sbjct: 50 agcttggcggagaggttcttgatgtagcgctt 19
>emb|AL805911.6| Mouse DNA sequence from clone RP23-71K8 on chromosome X, complete sequence Length = 157092 Score = 42.1 bits (21), Expect = 0.45 Identities = 24/25 (96%) Strand = Plus / Minus Query: 19 ctagctcctcaccttcaagcttggc 43 ||||||||||||||| ||||||||| Sbjct: 142888 ctagctcctcacctttaagcttggc 142864
>gb|AF421558.1| Glycine max translationally controlled tumor-like protein mRNA, complete cds Length = 884 Score = 40.1 bits (20), Expect = 1.8 Identities = 55/66 (83%), Gaps = 1/66 (1%) Strand = Plus / Minus Query: 80 aaactgcttcttgtcaaaagcaggttgctnctgaagacggaaggngt-aacaatgtcaac 138 |||||||||||| || || || ||||||| |||||| | ||| | || |||||||||||| Sbjct: 320 aaactgcttcttatcgaatgcgggttgctcctgaagtctgaatgtgtcaacaatgtcaac 261 Query: 139 cacctt 144 ||||| Sbjct: 260 aacctt 255
>emb|Z82250.1|HSN86D4 Human DNA sequence from clone LL22NC03-86D4 on chromosome 22, complete sequence Length = 39000 Score = 40.1 bits (20), Expect = 1.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 23 ctcctcaccttcaagcttgg 42 |||||||||||||||||||| Sbjct: 29556 ctcctcaccttcaagcttgg 29575
>emb|AL732602.5| Human DNA sequence from clone RP11-517D11 on chromosome X Contains the 3' end of a aldo-keto reductase family 1 member B1 (aldose reductase) (AKR1B1) pseudogene, a apoptosis inhibitor 5 (API5) pseudogene and the AGTR2 gene for type 2 angiotensin II receptor, complete sequence Length = 145388 Score = 40.1 bits (20), Expect = 1.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 77 aataaactgcttcttgtcaa 96 |||||||||||||||||||| Sbjct: 35350 aataaactgcttcttgtcaa 35369
>emb|AL138696.16| Human DNA sequence from clone RP11-369L4 on chromosome 13, complete sequence Length = 130931 Score = 40.1 bits (20), Expect = 1.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 cttcaagcttggcagtgagg 50 |||||||||||||||||||| Sbjct: 79843 cttcaagcttggcagtgagg 79824
>gb|AC145338.7| Pan troglodytes clone rp43-47g15, complete sequence Length = 202653 Score = 40.1 bits (20), Expect = 1.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 23 ctcctcaccttcaagcttgg 42 |||||||||||||||||||| Sbjct: 193583 ctcctcaccttcaagcttgg 193602
>gb|AF440620.1|AF440620 Homo sapiens 13q14 chronic lymphocytic leukemia suppressor locus section 2 of 2 Length = 440917 Score = 40.1 bits (20), Expect = 1.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 cttcaagcttggcagtgagg 50 |||||||||||||||||||| Sbjct: 27773 cttcaagcttggcagtgagg 27754
>gb|AF279660.2|AF279660 Homo sapiens CAR (RFP2) gene, complete cds; DLEU2 and DLEU1 genes, complete sequence; and RPL18 and p48/Hip pseudogenes, complete sequence Length = 347503 Score = 40.1 bits (20), Expect = 1.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 cttcaagcttggcagtgagg 50 |||||||||||||||||||| Sbjct: 329841 cttcaagcttggcagtgagg 329822
>gb|AC005948.14| Homo sapiens chromosome 13 clone 460f10 map 13q14, complete sequence Length = 154065 Score = 40.1 bits (20), Expect = 1.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 cttcaagcttggcagtgagg 50 |||||||||||||||||||| Sbjct: 141510 cttcaagcttggcagtgagg 141529
>gb|AC013358.32| Homo sapiens chromosome 13 clone 2252c9 map 13q14, complete sequence Length = 140312 Score = 40.1 bits (20), Expect = 1.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 cttcaagcttggcagtgagg 50 |||||||||||||||||||| Sbjct: 121376 cttcaagcttggcagtgagg 121357
>emb|AL450169.1|CNS07EEW Genomic sequence at the putative B_CLL involved tumor suppressor gene locus on human chromosome 13q14.3 clone PAC 4E7,BAC 93D9,PAC 63H3 of library LLNL from chromosome 13 of Homo sapiens (human) Length = 279647 Score = 40.1 bits (20), Expect = 1.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 cttcaagcttggcagtgagg 50 |||||||||||||||||||| Sbjct: 215019 cttcaagcttggcagtgagg 215000
>gb|AC158553.13| Mus musculus chromosome 8, clone RP23-349E13, complete sequence Length = 213309 Score = 38.2 bits (19), Expect = 7.0 Identities = 22/23 (95%) Strand = Plus / Minus Query: 23 ctcctcaccttcaagcttggcag 45 |||| |||||||||||||||||| Sbjct: 210630 ctccccaccttcaagcttggcag 210608
>gb|AY926905.1| Plethodon dorsalis clone P.dorsPRFA1 receptivity factor PRFA1 (PRF) mRNA, complete cds Length = 642 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 33 tcaagcttggcagtgaggt 51 ||||||||||||||||||| Sbjct: 407 tcaagcttggcagtgaggt 389
>gb|AY926904.1| Plethodon dorsalis clone P.dorsPRFA2 receptivity factor PRFA2 (PRF) mRNA, complete cds Length = 642 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 33 tcaagcttggcagtgaggt 51 ||||||||||||||||||| Sbjct: 407 tcaagcttggcagtgaggt 389
>gb|AY926903.1| Plethodon ventralis clone P.ventPRFA1 receptivity factor PRFA1 (PRF) mRNA, complete cds Length = 642 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 33 tcaagcttggcagtgaggt 51 ||||||||||||||||||| Sbjct: 407 tcaagcttggcagtgaggt 389
>gb|AY926902.1| Plethodon welleri clone P.wellPRFA3 receptivity factor PRFA3 (PRF) mRNA, complete cds Length = 642 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 33 tcaagcttggcagtgaggt 51 ||||||||||||||||||| Sbjct: 407 tcaagcttggcagtgaggt 389
>gb|AY926901.1| Plethodon welleri clone P.wellPRFA2 receptivity factor PRFA2 (PRF) mRNA, complete cds Length = 642 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 33 tcaagcttggcagtgaggt 51 ||||||||||||||||||| Sbjct: 407 tcaagcttggcagtgaggt 389
>gb|AY926900.1| Plethodon welleri clone P.wellPRFA1 receptivity factor PRFA1 (PRF) mRNA, complete cds Length = 642 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 33 tcaagcttggcagtgaggt 51 ||||||||||||||||||| Sbjct: 407 tcaagcttggcagtgaggt 389
>gb|AY926899.1| Plethodon wehrlei clone P.wehrPRFA5 receptivity factor PRFA5 (PRF) mRNA, complete cds Length = 681 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 33 tcaagcttggcagtgaggt 51 ||||||||||||||||||| Sbjct: 428 tcaagcttggcagtgaggt 410
>gb|AY926898.1| Plethodon wehrlei clone P.wehrPRFA4 receptivity factor PRFA4 (PRF) mRNA, complete cds Length = 681 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 33 tcaagcttggcagtgaggt 51 ||||||||||||||||||| Sbjct: 428 tcaagcttggcagtgaggt 410
>gb|AY926897.1| Plethodon wehrlei clone P.wehrPRFA3 receptivity factor PRFA3 (PRF) mRNA, complete cds Length = 684 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 33 tcaagcttggcagtgaggt 51 ||||||||||||||||||| Sbjct: 431 tcaagcttggcagtgaggt 413
>gb|AY926896.1| Plethodon wehrlei clone P.wehrPRFA2 receptivity factor PRFA2 (PRF) mRNA, complete cds Length = 684 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 33 tcaagcttggcagtgaggt 51 ||||||||||||||||||| Sbjct: 431 tcaagcttggcagtgaggt 413
>gb|AY926895.1| Plethodon wehrlei clone P.wehrPRFA1 receptivity factor PRFA1 (PRF) mRNA, complete cds Length = 684 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 33 tcaagcttggcagtgaggt 51 ||||||||||||||||||| Sbjct: 431 tcaagcttggcagtgaggt 413
>gb|AE008474.1| Streptococcus pneumoniae R6 section 90 of 184 of the complete genome Length = 11866 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 12 aaagcatctagctcctcac 30 ||||||||||||||||||| Sbjct: 10094 aaagcatctagctcctcac 10076
>gb|AC117723.8| Mus musculus chromosome 1, clone RP24-232C21, complete sequence Length = 213190 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 36 agcttggcagtgaggttct 54 ||||||||||||||||||| Sbjct: 25510 agcttggcagtgaggttct 25528
>gb|AC114662.11| Mus musculus chromosome 1, clone RP24-170M24, complete sequence Length = 131587 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 36 agcttggcagtgaggttct 54 ||||||||||||||||||| Sbjct: 9377 agcttggcagtgaggttct 9359
>gb|AC124327.9| Mus musculus chromosome 8, clone RP24-490I13, complete sequence Length = 141781 Score = 38.2 bits (19), Expect = 7.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 23 ctcctcaccttcaagcttggcag 45 |||| |||||||||||||||||| Sbjct: 113734 ctccccaccttcaagcttggcag 113756
>ref|XM_807063.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053509775.30) partial mRNA Length = 14109 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 1 cgttcttcttgaaagcatc 19 ||||||||||||||||||| Sbjct: 13798 cgttcttcttgaaagcatc 13780
>emb|AL360175.18| Human DNA sequence from clone RP11-524K22 on chromosome 6 Contains a novel gene, complete sequence Length = 58166 Score = 38.2 bits (19), Expect = 7.0 Identities = 22/23 (95%) Strand = Plus / Minus Query: 66 ttgatgtaagcaataaactgctt 88 |||||||||||| |||||||||| Sbjct: 13380 ttgatgtaagcagtaaactgctt 13358
>gb|AC124301.6| Homo sapiens chromosome 11, clone RP11-358H18, complete sequence Length = 145713 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 22 gctcctcaccttcaagctt 40 ||||||||||||||||||| Sbjct: 111410 gctcctcaccttcaagctt 111428
>dbj|AK137294.1| Mus musculus adult male urinary bladder cDNA, RIKEN full-length enriched library, clone:9530098L19 product:splicing factor, arginine/serine-rich 14, full insert sequence Length = 3519 Score = 38.2 bits (19), Expect = 7.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 23 ctcctcaccttcaagcttggcag 45 |||| |||||||||||||||||| Sbjct: 2769 ctccccaccttcaagcttggcag 2791
>gb|AC161266.2| Mus musculus BAC clone RP23-231B13 from chromosome 13, complete sequence Length = 190192 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 73 aagcaataaactgcttctt 91 ||||||||||||||||||| Sbjct: 84184 aagcaataaactgcttctt 84202
>dbj|AK081389.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130013D18 product:unclassifiable, full insert sequence Length = 3266 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 73 aagcaataaactgcttctt 91 ||||||||||||||||||| Sbjct: 893 aagcaataaactgcttctt 911
>gb|AC078864.20| Homo sapiens 12 PAC RP1-288H2 (Roswell Park Cancer Institute Human PAC Library) complete sequence Length = 44199 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 36 agcttggcagtgaggttct 54 ||||||||||||||||||| Sbjct: 1020 agcttggcagtgaggttct 1038
>gb|AC021066.37| Homo sapiens 12 BAC RP11-845M18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 158285 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 36 agcttggcagtgaggttct 54 ||||||||||||||||||| Sbjct: 157306 agcttggcagtgaggttct 157324
>gb|AE005672.2| Streptococcus pneumoniae TIGR4, complete genome Length = 2160842 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 12 aaagcatctagctcctcac 30 ||||||||||||||||||| Sbjct: 1047189 aaagcatctagctcctcac 1047171
>dbj|AK122260.1| Mus musculus mRNA for mKIAA0365 protein Length = 7253 Score = 38.2 bits (19), Expect = 7.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 23 ctcctcaccttcaagcttggcag 45 |||| |||||||||||||||||| Sbjct: 2993 ctccccaccttcaagcttggcag 3015
>gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1375 complete genome Length = 1751080 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 27 tcaccttcaagcttggcag 45 ||||||||||||||||||| Sbjct: 1474843 tcaccttcaagcttggcag 1474825
>gb|AC140345.3| Mus musculus BAC clone RP24-66E22 from 13, complete sequence Length = 238541 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 73 aagcaataaactgcttctt 91 ||||||||||||||||||| Sbjct: 234571 aagcaataaactgcttctt 234589
>emb|CT025619.9| Mouse DNA sequence from clone RP23-442M18 on chromosome 9, complete sequence Length = 193329 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 73 aagcaataaactgcttctt 91 ||||||||||||||||||| Sbjct: 14587 aagcaataaactgcttctt 14605 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,147,390 Number of Sequences: 3902068 Number of extensions: 1147390 Number of successful extensions: 86579 Number of sequences better than 10.0: 91 Number of HSP's better than 10.0 without gapping: 78 Number of HSP's successfully gapped in prelim test: 13 Number of HSP's that attempted gapping in prelim test: 86415 Number of HSP's gapped (non-prelim): 163 length of query: 146 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 125 effective length of database: 17,151,101,840 effective search space: 2143887730000 effective search space used: 2143887730000 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)