ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd22n18 |
|---|---|
| Clone Library Name | barley_pub |
>RPOC2_SACOF (Q6ENX1) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1534 Score = 362 bits (929), Expect = e-100 Identities = 186/186 (100%), Positives = 186/186 (100%) Frame = -2 Query: 558 ARSIDSLSPNLERRIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGV 379 ARSIDSLSPNLERRIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGV Sbjct: 1299 ARSIDSLSPNLERRIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGV 1358 Query: 378 QIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGI 199 QIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGI Sbjct: 1359 QIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGI 1418 Query: 198 TRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHR 19 TRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHR Sbjct: 1419 TRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHR 1478 Query: 18 SPQDKN 1 SPQDKN Sbjct: 1479 SPQDKN 1484
>RPOC2_SACHY (Q6L3A5) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1534 Score = 362 bits (929), Expect = e-100 Identities = 186/186 (100%), Positives = 186/186 (100%) Frame = -2 Query: 558 ARSIDSLSPNLERRIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGV 379 ARSIDSLSPNLERRIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGV Sbjct: 1299 ARSIDSLSPNLERRIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGV 1358 Query: 378 QIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGI 199 QIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGI Sbjct: 1359 QIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGI 1418 Query: 198 TRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHR 19 TRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHR Sbjct: 1419 TRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHR 1478 Query: 18 SPQDKN 1 SPQDKN Sbjct: 1479 SPQDKN 1484
>RPOC2_MAIZE (P16025) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1527 Score = 362 bits (929), Expect = e-100 Identities = 186/186 (100%), Positives = 186/186 (100%) Frame = -2 Query: 558 ARSIDSLSPNLERRIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGV 379 ARSIDSLSPNLERRIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGV Sbjct: 1292 ARSIDSLSPNLERRIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGV 1351 Query: 378 QIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGI 199 QIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGI Sbjct: 1352 QIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGI 1411 Query: 198 TRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHR 19 TRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHR Sbjct: 1412 TRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHR 1471 Query: 18 SPQDKN 1 SPQDKN Sbjct: 1472 SPQDKN 1477
>RPOC2_WHEAT (Q9XPS9) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1479 Score = 360 bits (923), Expect = 2e-99 Identities = 185/186 (99%), Positives = 185/186 (99%) Frame = -2 Query: 558 ARSIDSLSPNLERRIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGV 379 ARSIDSLSPNLERRIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGV Sbjct: 1255 ARSIDSLSPNLERRIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGV 1314 Query: 378 QIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGI 199 QIHNRHIEIIIRQVTSKVRVSEDGMSNVF PGELIGLLRAERAGRALDESIYYRAILLGI Sbjct: 1315 QIHNRHIEIIIRQVTSKVRVSEDGMSNVFSPGELIGLLRAERAGRALDESIYYRAILLGI 1374 Query: 198 TRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHR 19 TRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHR Sbjct: 1375 TRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHR 1434 Query: 18 SPQDKN 1 SPQDKN Sbjct: 1435 SPQDKN 1440
>RPOC2_ORYNI (Q6ENI2) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1513 Score = 353 bits (906), Expect = 2e-97 Identities = 182/186 (97%), Positives = 182/186 (97%) Frame = -2 Query: 558 ARSIDSLSPNLERRIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGV 379 ARSIDSLSPNLERRIEDWNERIPRILG PWGFLIGAELTIAQSRISLVNKIQKVYRSQGV Sbjct: 1280 ARSIDSLSPNLERRIEDWNERIPRILGGPWGFLIGAELTIAQSRISLVNKIQKVYRSQGV 1339 Query: 378 QIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGI 199 QIHNRHIEIIIRQVTSKVRVSEDGMSNVF PGELIGLLRAERAGRALDESIYYRAILLGI Sbjct: 1340 QIHNRHIEIIIRQVTSKVRVSEDGMSNVFSPGELIGLLRAERAGRALDESIYYRAILLGI 1399 Query: 198 TRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHR 19 TR SLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHR Sbjct: 1400 TRVSLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHR 1459 Query: 18 SPQDKN 1 PQDKN Sbjct: 1460 YPQDKN 1465
>RPOC2_ORYSA (P12093) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1513 Score = 351 bits (901), Expect = 7e-97 Identities = 181/186 (97%), Positives = 182/186 (97%) Frame = -2 Query: 558 ARSIDSLSPNLERRIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGV 379 ARSIDSLSPNLERRIEDWNERIPRILG PWGFLIGAELTIAQSRISLVNKIQKVYRSQGV Sbjct: 1280 ARSIDSLSPNLERRIEDWNERIPRILGGPWGFLIGAELTIAQSRISLVNKIQKVYRSQGV 1339 Query: 378 QIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGI 199 QIHNRHIEIIIRQVTSKVRVSEDGMSNVF PGELIGLLRAERAGRALDESIYYRAILLGI Sbjct: 1340 QIHNRHIEIIIRQVTSKVRVSEDGMSNVFSPGELIGLLRAERAGRALDESIYYRAILLGI 1399 Query: 198 TRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHR 19 TR SLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHR Sbjct: 1400 TRVSLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHR 1459 Query: 18 SPQDKN 1 PQ+KN Sbjct: 1460 YPQNKN 1465
>RPOC2_PHAAO (Q3BAQ2) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1388 Score = 323 bits (828), Expect = 2e-88 Identities = 165/185 (89%), Positives = 174/185 (94%) Frame = -2 Query: 555 RSIDSLSPNLERRIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQ 376 RSIDS+S NLERR+E W+ERI RILG+PWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQ Sbjct: 1158 RSIDSISMNLERRVEGWDERIRRILGIPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQ 1217 Query: 375 IHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGIT 196 IHNRH+EII+RQVTS+V VSEDGMSNVFLPGE IGLLRAERAGR L ESI YRAILLGIT Sbjct: 1218 IHNRHLEIIVRQVTSRVLVSEDGMSNVFLPGEFIGLLRAERAGRVLAESICYRAILLGIT 1277 Query: 195 RASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHRS 16 ++SLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGF K VHRS Sbjct: 1278 KSSLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFNKLVHRS 1337 Query: 15 PQDKN 1 QDKN Sbjct: 1338 KQDKN 1342
>RPOC2_EUCGG (Q49L08) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1392 Score = 317 bits (813), Expect = 1e-86 Identities = 162/185 (87%), Positives = 172/185 (92%) Frame = -2 Query: 555 RSIDSLSPNLERRIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQ 376 RSIDS+S NLE+RIE WNE I +ILG+PWGFLIGAELTI QSRISLVNKIQKVYRSQGVQ Sbjct: 1160 RSIDSISMNLEKRIEGWNEHIKKILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVQ 1219 Query: 375 IHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGIT 196 IHNRHIEII+RQ+TSKV VSEDGMSNVFLPGELIGLLRA R GRAL+ESI YRAILLGIT Sbjct: 1220 IHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLLRAARTGRALEESICYRAILLGIT 1279 Query: 195 RASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHRS 16 RASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVV+GG+IPVGTGF+ VHRS Sbjct: 1280 RASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVIGGMIPVGTGFKGLVHRS 1339 Query: 15 PQDKN 1 Q KN Sbjct: 1340 RQHKN 1344
>RPOC2_SPIOL (P11704) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1361 Score = 316 bits (810), Expect = 2e-86 Identities = 162/185 (87%), Positives = 172/185 (92%) Frame = -2 Query: 555 RSIDSLSPNLERRIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQ 376 RSIDS+S NLE+RI+ WNERI RILG PWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQ Sbjct: 1144 RSIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQ 1203 Query: 375 IHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGIT 196 IHNRHIEII+RQ+TSKV VSEDGMSNVFLPGELIGL RAER GRAL+E+I YRA LLGIT Sbjct: 1204 IHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLLGIT 1263 Query: 195 RASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHRS 16 RASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGG+IPVGTGF+ FVH S Sbjct: 1264 RASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFVHHS 1323 Query: 15 PQDKN 1 Q K+ Sbjct: 1324 SQHKD 1328
>RPOC2_NYMAL (Q6EW58) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1401 Score = 316 bits (810), Expect = 2e-86 Identities = 159/185 (85%), Positives = 174/185 (94%) Frame = -2 Query: 555 RSIDSLSPNLERRIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQ 376 RSIDS+S NLE+R+E WNE I ILG+PWGFLIGAELTIAQSR+SLVNKIQKVYRSQGVQ Sbjct: 1156 RSIDSISMNLEKRVEGWNEHITGILGIPWGFLIGAELTIAQSRVSLVNKIQKVYRSQGVQ 1215 Query: 375 IHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGIT 196 IHN+HIEII+RQ+TSKV VSEDGMSNVF PGELIGLLRAERAGRAL+E+I YRA+LLGIT Sbjct: 1216 IHNKHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERAGRALEEAICYRAVLLGIT 1275 Query: 195 RASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHRS 16 RASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGG+IPVGTGF++FVHRS Sbjct: 1276 RASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKRFVHRS 1335 Query: 15 PQDKN 1 + N Sbjct: 1336 REYNN 1340
>RPOC2_CALFE (Q7YJY0) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1377 Score = 314 bits (805), Expect = 9e-86 Identities = 160/186 (86%), Positives = 173/186 (93%) Frame = -2 Query: 558 ARSIDSLSPNLERRIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGV 379 ARSIDS+S NLE+R+E WNERI +ILG+PWGFLIGAELTIAQSRISLVNKIQKVYRSQGV Sbjct: 1153 ARSIDSISMNLEKRVEGWNERITKILGIPWGFLIGAELTIAQSRISLVNKIQKVYRSQGV 1212 Query: 378 QIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGI 199 QIHNRHIEII+RQ+TS+V VSEDGMSNVF PGELIGLLRAER GRAL+E+I YRAILLGI Sbjct: 1213 QIHNRHIEIIVRQITSRVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAILLGI 1272 Query: 198 TRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHR 19 TRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGG++PVGTGF+ V R Sbjct: 1273 TRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMMPVGTGFKGLVRR 1332 Query: 18 SPQDKN 1 S Q N Sbjct: 1333 SRQHNN 1338
>RPOC2_SILLA (Q589B8) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1373 Score = 313 bits (803), Expect = 2e-85 Identities = 157/185 (84%), Positives = 173/185 (93%) Frame = -2 Query: 555 RSIDSLSPNLERRIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQ 376 RS++S+S NLE+RI WNERI +ILG+PWGFL+GAELTIAQSRISLVNKIQKVYRSQGVQ Sbjct: 1146 RSVESISMNLEKRINGWNERIKKILGIPWGFLVGAELTIAQSRISLVNKIQKVYRSQGVQ 1205 Query: 375 IHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGIT 196 IH+RHIEII+RQ+TSKV VSEDGMSN+FLPGELIGL RAER GRAL+E+I YR ILLGIT Sbjct: 1206 IHDRHIEIIVRQITSKVLVSEDGMSNIFLPGELIGLFRAERTGRALEEAICYRTILLGIT 1265 Query: 195 RASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHRS 16 RASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGG+IPVGTGF+ FVHRS Sbjct: 1266 RASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFVHRS 1325 Query: 15 PQDKN 1 Q K+ Sbjct: 1326 NQHKS 1330
>RPOC2_SOLTU (Q2VEI6) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1392 Score = 312 bits (800), Expect = 4e-85 Identities = 157/185 (84%), Positives = 171/185 (92%) Frame = -2 Query: 555 RSIDSLSPNLERRIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQ 376 RSIDS+S NLE+R+E WN+ IPRILG+PWGFLIGAELTIAQSRISLVNKIQ+VYRSQGVQ Sbjct: 1160 RSIDSISMNLEKRVESWNKCIPRILGIPWGFLIGAELTIAQSRISLVNKIQQVYRSQGVQ 1219 Query: 375 IHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGIT 196 IHNRHIEII+RQ+TSKV +SEDGMSNVF PGELIGLLRAER GRAL+E+I YR +LLGIT Sbjct: 1220 IHNRHIEIIVRQITSKVLISEDGMSNVFSPGELIGLLRAERMGRALEEAICYRVVLLGIT 1279 Query: 195 RASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHRS 16 RASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGG+IPVGTGF+ VH S Sbjct: 1280 RASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGVIPVGTGFKGLVHPS 1339 Query: 15 PQDKN 1 Q N Sbjct: 1340 KQHNN 1344
>RPOC2_CUCSA (Q4VZP3) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1394 Score = 312 bits (799), Expect = 5e-85 Identities = 157/185 (84%), Positives = 172/185 (92%) Frame = -2 Query: 555 RSIDSLSPNLERRIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQ 376 RSIDS+S +LE+RIE WNERI RILG+PWGFLIGAELTI QSRISLVNKIQKVYRSQGV+ Sbjct: 1162 RSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVE 1221 Query: 375 IHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGIT 196 IHNRHIEII+RQ+TSKV VSEDGMSNVF PGELIGLLRAER GRAL+E+I YRA+LLGIT Sbjct: 1222 IHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGIT 1281 Query: 195 RASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHRS 16 +ASLNTQSFISEASFQETARVLAKAALRGRIDWL+GLKENVVLGG+IPVGTGF++ HRS Sbjct: 1282 KASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPVGTGFRELAHRS 1341 Query: 15 PQDKN 1 Q N Sbjct: 1342 RQHNN 1346
>RPOC2_ACOCL (Q3V544) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1386 Score = 311 bits (798), Expect = 6e-85 Identities = 157/185 (84%), Positives = 171/185 (92%) Frame = -2 Query: 555 RSIDSLSPNLERRIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQ 376 RSIDS+S NLE+R+E WNE I +ILG+PWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQ Sbjct: 1153 RSIDSISTNLEKRVEGWNEHITKILGIPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQ 1212 Query: 375 IHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGIT 196 IHN+HIEII+RQ+TSKV VSEDGMSNVF PGELIGLLRAER GRAL+E+I YRAILLGIT Sbjct: 1213 IHNKHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAILLGIT 1272 Query: 195 RASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHRS 16 RASLNTQSFISEASFQETARVLAKAALRGR+DWLKGLKENVVLG +IPVGTGF+ VHRS Sbjct: 1273 RASLNTQSFISEASFQETARVLAKAALRGRVDWLKGLKENVVLGAMIPVGTGFKALVHRS 1332 Query: 15 PQDKN 1 + N Sbjct: 1333 RKPNN 1337
>RPOC2_NICTO (Q33C48) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1392 Score = 310 bits (793), Expect = 2e-84 Identities = 158/185 (85%), Positives = 170/185 (91%) Frame = -2 Query: 555 RSIDSLSPNLERRIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQ 376 RSIDS+S NLE+RIE WN+ I RILG+PWGFLIGAELTIAQSRISLVNKIQ+VYRSQGVQ Sbjct: 1160 RSIDSISMNLEKRIEGWNKCITRILGIPWGFLIGAELTIAQSRISLVNKIQQVYRSQGVQ 1219 Query: 375 IHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGIT 196 IHNRHIEII+RQ+TSKV VSEDGMSNVF PGELIGLLRAER GRAL+E+I YR +LLGIT Sbjct: 1220 IHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERMGRALEEAICYRVVLLGIT 1279 Query: 195 RASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHRS 16 RASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGG+IPVGTGF+ VH S Sbjct: 1280 RASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGVIPVGTGFKGLVHPS 1339 Query: 15 PQDKN 1 Q N Sbjct: 1340 KQHNN 1344
>RPOC2_ATRBE (Q8S8Y1) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1389 Score = 309 bits (792), Expect = 3e-84 Identities = 157/185 (84%), Positives = 170/185 (91%) Frame = -2 Query: 555 RSIDSLSPNLERRIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQ 376 RSIDS+S NLE+R+E WN+ I RILG+PWGFLIGAELTIAQSRISLVNKIQ+VYRSQGVQ Sbjct: 1157 RSIDSISMNLEKRVEGWNKCITRILGIPWGFLIGAELTIAQSRISLVNKIQQVYRSQGVQ 1216 Query: 375 IHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGIT 196 IHNRHIEII+RQ+TSKV VSEDGMSNVF PGELIGLLRAER GRAL+E+I YR +LLGIT Sbjct: 1217 IHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERMGRALEEAICYRVVLLGIT 1276 Query: 195 RASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHRS 16 RASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGG+IPVGTGF+ VH S Sbjct: 1277 RASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGVIPVGTGFKGLVHPS 1336 Query: 15 PQDKN 1 Q N Sbjct: 1337 KQHNN 1341
>RPOC2_TOBAC (P38550) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1388 Score = 308 bits (790), Expect = 5e-84 Identities = 156/185 (84%), Positives = 170/185 (91%) Frame = -2 Query: 555 RSIDSLSPNLERRIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQ 376 RS+DS+S NLE+RIE WN+ I RILG+PWGFLIGAELTIAQSRISLVNKIQ+VYRSQGVQ Sbjct: 1156 RSVDSISMNLEKRIEGWNKCITRILGIPWGFLIGAELTIAQSRISLVNKIQQVYRSQGVQ 1215 Query: 375 IHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGIT 196 IHNRH+EII+RQ+TSKV VSEDGMSNVF PGELIGLLRAER GRAL+E+I YR +LLGIT Sbjct: 1216 IHNRHLEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERMGRALEEAICYRVVLLGIT 1275 Query: 195 RASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHRS 16 RASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGG+IPVGTGF+ VH S Sbjct: 1276 RASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGVIPVGTGFKGLVHPS 1335 Query: 15 PQDKN 1 Q N Sbjct: 1336 KQHNN 1340
>RPOC2_NICSY (Q3C1G9) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1392 Score = 308 bits (790), Expect = 5e-84 Identities = 156/185 (84%), Positives = 170/185 (91%) Frame = -2 Query: 555 RSIDSLSPNLERRIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQ 376 RS+DS+S NLE+RIE WN+ I RILG+PWGFLIGAELTIAQSRISLVNKIQ+VYRSQGVQ Sbjct: 1160 RSVDSISMNLEKRIEGWNKCITRILGIPWGFLIGAELTIAQSRISLVNKIQQVYRSQGVQ 1219 Query: 375 IHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGIT 196 IHNRH+EII+RQ+TSKV VSEDGMSNVF PGELIGLLRAER GRAL+E+I YR +LLGIT Sbjct: 1220 IHNRHLEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERMGRALEEAICYRVVLLGIT 1279 Query: 195 RASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHRS 16 RASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGG+IPVGTGF+ VH S Sbjct: 1280 RASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGVIPVGTGFKGLVHPS 1339 Query: 15 PQDKN 1 Q N Sbjct: 1340 KQHNN 1344
>RPOC2_OENHO (Q9MTM3) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1386 Score = 307 bits (787), Expect = 1e-83 Identities = 156/185 (84%), Positives = 169/185 (91%) Frame = -2 Query: 555 RSIDSLSPNLERRIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQ 376 RS+DS+S NLE+R+E+WNE I RILG PWGFLIGAELTI QSRISLVNKIQKVYRSQGVQ Sbjct: 1155 RSVDSISVNLEKRVENWNEHITRILGFPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVQ 1214 Query: 375 IHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGIT 196 IHNRHIEII+RQ+TSKV VSEDGMSNVFLP ELIGLLRAER GRAL+ESI Y+A LLGIT Sbjct: 1215 IHNRHIEIIVRQITSKVLVSEDGMSNVFLPRELIGLLRAERTGRALEESICYKAFLLGIT 1274 Query: 195 RASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHRS 16 R SLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVV+GG+IPVGTGF+ VH S Sbjct: 1275 RTSLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVIGGMIPVGTGFKGLVHCS 1334 Query: 15 PQDKN 1 Q K+ Sbjct: 1335 KQHKS 1339
>RPOC2_PEA (P12227) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) (Fragment) Length = 1163 Score = 306 bits (785), Expect = 2e-83 Identities = 152/180 (84%), Positives = 170/180 (94%) Frame = -2 Query: 555 RSIDSLSPNLERRIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQ 376 RSIDS+S NLE+RI+ WNE I +I+G+PWGFLIGAELTIAQSRISLVNKIQKVYRSQGV Sbjct: 945 RSIDSISMNLEKRIDAWNECITKIIGIPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVH 1004 Query: 375 IHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGIT 196 IHNRHIEII+RQ+TSKV VSEDGMSN+FLPGELIGLLRAER GRAL+E+I YRA+LLG+T Sbjct: 1005 IHNRHIEIIVRQITSKVLVSEDGMSNIFLPGELIGLLRAERTGRALEEAICYRALLLGVT 1064 Query: 195 RASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHRS 16 + SLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGG+IPVGTGF++ +HRS Sbjct: 1065 KTSLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKRIMHRS 1124
>RPOC2_ARATH (P56764) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1376 Score = 305 bits (782), Expect = 4e-83 Identities = 158/186 (84%), Positives = 170/186 (91%), Gaps = 1/186 (0%) Frame = -2 Query: 555 RSIDSLSPNLERRIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQ 376 RSIDS+S NLE+RI+ WN+ I RILG+PWGFLIGAELTI QSRISLVNKIQKVYRSQGVQ Sbjct: 1151 RSIDSISLNLEKRIKGWNKCITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVQ 1210 Query: 375 IHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGIT 196 IHNRHIEII+RQ+TSKV VSE+GMSNVFLPGELIGLLRAER GRAL+E+I YRA+LLGIT Sbjct: 1211 IHNRHIEIIVRQITSKVLVSEEGMSNVFLPGELIGLLRAERTGRALEEAICYRAVLLGIT 1270 Query: 195 RASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQK-FVHR 19 RASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGG+IP GTGF K VH Sbjct: 1271 RASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGVIPAGTGFNKGLVHC 1330 Query: 18 SPQDKN 1 S Q N Sbjct: 1331 SRQHTN 1336
>RPOC2_SOYBN (Q8HVY3) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1386 Score = 305 bits (781), Expect = 6e-83 Identities = 152/182 (83%), Positives = 171/182 (93%) Frame = -2 Query: 555 RSIDSLSPNLERRIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQ 376 RSIDS+S NLE+R++ WN RI +ILG+PWGFLIGAELTIAQSRISLVNKIQKVYRSQGV Sbjct: 1158 RSIDSISMNLEKRVDTWNGRITKILGIPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVH 1217 Query: 375 IHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGIT 196 IHNRHIEII+RQ+TSKV VSEDGMSNVFLPGELIGLLRAERAGR+L+E+I YR +LLGIT Sbjct: 1218 IHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLLRAERAGRSLEEAICYRVLLLGIT 1277 Query: 195 RASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHRS 16 + SLNTQSFISEASFQETARVL+KAALRGRIDWLKGLKENVVLGG+IPVGTGF++ ++RS Sbjct: 1278 KTSLNTQSFISEASFQETARVLSKAALRGRIDWLKGLKENVVLGGMIPVGTGFKRIMNRS 1337 Query: 15 PQ 10 Q Sbjct: 1338 KQ 1339
>RPOC2_PANGI (Q68S16) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1387 Score = 305 bits (780), Expect = 7e-83 Identities = 156/185 (84%), Positives = 169/185 (91%) Frame = -2 Query: 555 RSIDSLSPNLERRIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQ 376 RSIDS+S NLE+R+E WNE I R LG+PWGFLIGAELTI QSRISLVNKIQKVYRSQGVQ Sbjct: 1155 RSIDSISMNLEKRVEGWNECITRNLGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVQ 1214 Query: 375 IHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGIT 196 IHNRHIEII+RQ+TSKV VSEDGMSNVFLPGE IGLLRAER GRAL+E+I Y+A+LLGIT Sbjct: 1215 IHNRHIEIIVRQITSKVLVSEDGMSNVFLPGEFIGLLRAERMGRALEEAICYQAVLLGIT 1274 Query: 195 RASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHRS 16 +ASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGG+IPVGTGF+ V S Sbjct: 1275 KASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGLVPPS 1334 Query: 15 PQDKN 1 Q KN Sbjct: 1335 RQHKN 1339
>RPOC2_LOTJA (Q9BBS7) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1332 Score = 298 bits (762), Expect = 9e-81 Identities = 152/180 (84%), Positives = 165/180 (91%) Frame = -2 Query: 555 RSIDSLSPNLERRIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQ 376 RSIDS+S NLE+RI+ WNERI ILG+PW FLIGAELTIAQSRISLVNKIQ+VYRSQGV Sbjct: 1133 RSIDSISMNLEKRIDAWNERITGILGIPWRFLIGAELTIAQSRISLVNKIQRVYRSQGVH 1192 Query: 375 IHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGIT 196 IHNRHIEII+RQ+TSKV VSEDGMSNVF PGELIGLLRA+R GRAL+ESI YR +LLGIT Sbjct: 1193 IHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAQRTGRALEESICYRTLLLGIT 1252 Query: 195 RASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHRS 16 + SLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKEN+VLGGIIPVGTGF+K RS Sbjct: 1253 KTSLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENLVLGGIIPVGTGFKKIGDRS 1312
>RPOC2_AMBTC (P60289) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1373 Score = 294 bits (752), Expect = 1e-79 Identities = 150/185 (81%), Positives = 162/185 (87%) Frame = -2 Query: 555 RSIDSLSPNLERRIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQ 376 RSIDS+S NLE+R+E WNERI LG+PW F I A+LTI QSRISLVNKIQKVYRSQGVQ Sbjct: 1149 RSIDSISMNLEKRVEGWNERITGFLGIPWEFFISAQLTIVQSRISLVNKIQKVYRSQGVQ 1208 Query: 375 IHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGIT 196 IHNRHIE I+RQ+TSKV VSEDGMSNVF P ELIGLLRAER GRAL++ I YRAILLGIT Sbjct: 1209 IHNRHIETIVRQITSKVLVSEDGMSNVFSPRELIGLLRAERIGRALEDDICYRAILLGIT 1268 Query: 195 RASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHRS 16 RASLNTQSFISEASFQET RVLAKAALR RIDWLKGLKENVVLGG+IPVGTGF+ FVH S Sbjct: 1269 RASLNTQSFISEASFQETTRVLAKAALRSRIDWLKGLKENVVLGGMIPVGTGFKGFVHHS 1328 Query: 15 PQDKN 1 + N Sbjct: 1329 REHNN 1333
>RPOC2_SINAL (Q9THV5) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1384 Score = 293 bits (751), Expect = 2e-79 Identities = 149/175 (85%), Positives = 163/175 (93%) Frame = -2 Query: 555 RSIDSLSPNLERRIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQ 376 RSIDS+S NLE+RI+ WN I RILG+PWGFLIGAELTI QSRISLVNKI++VYRSQGVQ Sbjct: 1159 RSIDSISLNLEKRIKGWNRCITRILGIPWGFLIGAELTIVQSRISLVNKIKQVYRSQGVQ 1218 Query: 375 IHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGIT 196 IHNRHIEII+RQ+TSKV VSE+GMSNVFLPGELIGLLRAER GRAL+E+I YRA+LLGIT Sbjct: 1219 IHNRHIEIIVRQITSKVLVSEEGMSNVFLPGELIGLLRAERTGRALEEAICYRAVLLGIT 1278 Query: 195 RASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQK 31 RASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGG+IP G G Q+ Sbjct: 1279 RASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGVIPPGPGSQR 1333
>RPOC2_LACSA (Q56P11) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1381 Score = 291 bits (744), Expect = 1e-78 Identities = 147/174 (84%), Positives = 162/174 (93%) Frame = -2 Query: 555 RSIDSLSPNLERRIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQ 376 RSIDS+S NLE+RIE WN+ I RILG+PW FLIGAELTI QSRISLVNK+QKVYRSQGVQ Sbjct: 1153 RSIDSISMNLEKRIEGWNKSITRILGIPWAFLIGAELTIVQSRISLVNKVQKVYRSQGVQ 1212 Query: 375 IHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGIT 196 IHNRHIEII+RQ+TSKV VSED MSNVF PGELIGLLRAER GRAL+E+I Y+A+LLGIT Sbjct: 1213 IHNRHIEIIVRQITSKVLVSEDEMSNVFSPGELIGLLRAERMGRALEEAICYQAVLLGIT 1272 Query: 195 RASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQ 34 RAS+NTQSFISEASFQETARVLAKAAL GRIDWLKGLKENVVLGG+IPVG+GF+ Sbjct: 1273 RASMNTQSFISEASFQETARVLAKAALLGRIDWLKGLKENVVLGGMIPVGSGFK 1326
>RPOC2_PINKO (Q85X62) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1209 Score = 241 bits (616), Expect = 8e-64 Identities = 124/181 (68%), Positives = 150/181 (82%) Frame = -2 Query: 558 ARSIDSLSPNLERRIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGV 379 AR +S+S NL+ E+W + R LG WG I A +T+ QS+I LVN+IQKVYRSQGV Sbjct: 981 ARLNNSISMNLKESFENWTGDMTRFLGSLWGLFISARITMEQSQIHLVNQIQKVYRSQGV 1040 Query: 378 QIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGI 199 +I ++HIEII+RQ+TSKV +SEDG +NVF PGELIGL RA+R RAL+E+IYY+ +LLGI Sbjct: 1041 RIGDKHIEIIVRQMTSKVLISEDGTANVFSPGELIGLSRAQRMDRALEETIYYQTMLLGI 1100 Query: 198 TRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHR 19 TRASLNTQSFISEASFQETARVLAKAAL+GRIDWLKGLKENV+LGG+IP GTG + +HR Sbjct: 1101 TRASLNTQSFISEASFQETARVLAKAALQGRIDWLKGLKENVILGGMIPAGTG--QHIHR 1158 Query: 18 S 16 S Sbjct: 1159 S 1159
>RPOC2_PINTH (P41606) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1224 Score = 238 bits (606), Expect = 1e-62 Identities = 122/181 (67%), Positives = 149/181 (82%) Frame = -2 Query: 558 ARSIDSLSPNLERRIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGV 379 AR +S+S NL+ E+W + R LG WG I A +T+ QS+I LVN+IQKVYRSQGV Sbjct: 995 ARLNNSISMNLKESFENWTGDMTRFLGSLWGLFISARITMEQSQIHLVNQIQKVYRSQGV 1054 Query: 378 QIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGI 199 +I ++HIE+I+RQ+TSKV +SEDG +NVF PGELI L RA+R RAL+E+IYY+ +LLGI Sbjct: 1055 RIGDKHIEVIVRQMTSKVLISEDGTANVFSPGELIVLSRAQRMDRALEEAIYYQTMLLGI 1114 Query: 198 TRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHR 19 TRASLNTQSFISEASFQETARVLAKAAL+GRIDWLKGLKENV+LGG+IP GTG + +HR Sbjct: 1115 TRASLNTQSFISEASFQETARVLAKAALQGRIDWLKGLKENVILGGMIPAGTG--QHIHR 1172 Query: 18 S 16 S Sbjct: 1173 S 1173
>RPOC2_MARPO (P06274) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1386 Score = 234 bits (596), Expect = 2e-61 Identities = 115/185 (62%), Positives = 149/185 (80%) Frame = -2 Query: 558 ARSIDSLSPNLERRIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGV 379 AR I+S+S NLE EDWN + + +G WGF + ++++ Q +I+LV++IQKVY+SQGV Sbjct: 1148 ARPINSVSINLENGFEDWNNDMIKFIGNLWGFFLSTKISMEQGQINLVDQIQKVYQSQGV 1207 Query: 378 QIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGI 199 QI N+HIEII+RQ+TSKV EDGM+NVFLPGELI R ++ RAL+E++ Y+ ILLGI Sbjct: 1208 QISNKHIEIIVRQMTSKVITLEDGMTNVFLPGELIEFSRTQKMNRALEEAVPYKPILLGI 1267 Query: 198 TRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHR 19 T+ASLNTQSFISEASFQET RVLAKAAL+GRIDWLKGLKENV+LGG++P GTG Q+ + + Sbjct: 1268 TKASLNTQSFISEASFQETTRVLAKAALKGRIDWLKGLKENVILGGLVPAGTGSQEVIWQ 1327 Query: 18 SPQDK 4 +K Sbjct: 1328 ITLEK 1332
>RPOC2_ANTFO (Q85C71) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1445 Score = 228 bits (581), Expect = 9e-60 Identities = 116/178 (65%), Positives = 143/178 (80%) Frame = -2 Query: 558 ARSIDSLSPNLERRIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGV 379 AR I+S S NLE E+WN + + LG WGFL+ A+ T+ QS+I+LV++IQ+VY+SQGV Sbjct: 1205 ARPINSTSINLENGFENWNRDMTKSLGSLWGFLLSAKTTMNQSQINLVDQIQEVYQSQGV 1264 Query: 378 QIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGI 199 I ++HIEI++RQ+TSKV EDGM+N FLPGELI RA+R R L+ES+ Y+ ILLGI Sbjct: 1265 YISDKHIEIVVRQMTSKVLTLEDGMANGFLPGELIESSRAQRMNRVLEESVLYKPILLGI 1324 Query: 198 TRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFV 25 T+ASLNTQSFISEASFQET RVLAKAALRGRIDWLKGLKENV+ GG+I GTG Q+ V Sbjct: 1325 TKASLNTQSFISEASFQETTRVLAKAALRGRIDWLKGLKENVIFGGVISAGTGCQEVV 1382
>RPOC2_PHYPA (P60290) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1330 Score = 227 bits (578), Expect = 2e-59 Identities = 114/185 (61%), Positives = 146/185 (78%) Frame = -2 Query: 558 ARSIDSLSPNLERRIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGV 379 AR + +S NLE+ +WN+ + G WG+ + A++++ QS+++LVN+IQKVYRSQGV Sbjct: 1106 ARLTNPVSINLEKGFGEWNKDMTNFFGSLWGYFLSAQISMEQSQVNLVNQIQKVYRSQGV 1165 Query: 378 QIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGI 199 I ++HIEII+RQ+TSKV EDGM+N FLPGELI RA+R RAL+E I Y+ +LLGI Sbjct: 1166 NISDKHIEIIVRQMTSKVFTLEDGMTNGFLPGELIEFARAKRMNRALEEVIPYKPVLLGI 1225 Query: 198 TRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHR 19 T+ASLNTQSFISEASFQET RVLAKAALRGRIDWLKGLKENV+LGGIIP GTG ++ + + Sbjct: 1226 TKASLNTQSFISEASFQETTRVLAKAALRGRIDWLKGLKENVILGGIIPTGTGCEEVLWQ 1285 Query: 18 SPQDK 4 +K Sbjct: 1286 ITLEK 1290
>RPOC2_CHAGL (Q8MA10) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1373 Score = 225 bits (574), Expect = 6e-59 Identities = 109/180 (60%), Positives = 144/180 (80%) Frame = -2 Query: 558 ARSIDSLSPNLERRIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGV 379 AR +++LS NL+ DWN I R+LG PWGF + + + I QS++ LVN+IQKVY+SQGV Sbjct: 1141 ARPLNNLSSNLDFGFLDWNTDISRLLGNPWGFFLSSLIIIRQSQLELVNQIQKVYQSQGV 1200 Query: 378 QIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGI 199 QI ++H+EII+RQ+TS+V +E+ N FLPGEL+ L +A+R + L+ S+ Y+ ILLGI Sbjct: 1201 QISDKHLEIIVRQMTSRVLTTEENGPNAFLPGELVDLFKAQRMNQILENSLAYKPILLGI 1260 Query: 198 TRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHR 19 TRASLNT SFISEASFQET +VL KAAL+GRIDWL+GLKENV+LGGIIP GTG+QK +++ Sbjct: 1261 TRASLNTYSFISEASFQETTKVLTKAALQGRIDWLQGLKENVILGGIIPAGTGYQKILNK 1320
>RPOC2_PSINU (Q8WI26) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1408 Score = 215 bits (548), Expect = 6e-56 Identities = 108/186 (58%), Positives = 143/186 (76%) Frame = -2 Query: 558 ARSIDSLSPNLERRIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGV 379 ARS++++S N+E + N I + + PW F A+++ QSR LV++IQ VY+SQGV Sbjct: 1172 ARSVNAVSRNIEDNFKKCNRVIAKFIESPWSFFFSAKISTEQSRKDLVDQIQGVYQSQGV 1231 Query: 378 QIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGI 199 QI ++HIEII+RQ+TSKV EDG++ VFLPGELI L RA+R RAL + IYY+ ILLGI Sbjct: 1232 QISDKHIEIIVRQMTSKVLTLEDGIATVFLPGELIELPRAQRMNRALKQLIYYKPILLGI 1291 Query: 198 TRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHR 19 T+ASLNT SF+SEASFQET RVLA+AA+RGRIDWLKGLKENV++GGI+P GTG ++ + Sbjct: 1292 TKASLNTTSFLSEASFQETTRVLARAAIRGRIDWLKGLKENVIIGGIVPTGTGSREVTCQ 1351 Query: 18 SPQDKN 1 +K+ Sbjct: 1352 MDLEKH 1357
>RPOC2_ADICA (Q85FM9) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1420 Score = 206 bits (524), Expect = 4e-53 Identities = 101/173 (58%), Positives = 137/173 (79%) Frame = -2 Query: 558 ARSIDSLSPNLERRIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGV 379 +RSI S+S + E W + I +++G PW L+GA ++ ++ L+++I+KVY SQGV Sbjct: 1182 SRSIASISAGIGDLFEKWCQNITKLIGNPWSHLLGAGRSMEHCQLILIDQIRKVYESQGV 1241 Query: 378 QIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGI 199 +I ++H+EII+RQ+TS+V SEDG++NVFLPGEL+ L +AER R L +SI+Y I+LG+ Sbjct: 1242 RICDKHLEIIVRQLTSRVVASEDGVTNVFLPGELVELSQAERINRVLKKSIFYEPIVLGM 1301 Query: 198 TRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTG 40 TRASL+T SF++EASFQET RVLAKAALRGRIDWLKGLKENVV+G +PVGTG Sbjct: 1302 TRASLSTTSFLAEASFQETTRVLAKAALRGRIDWLKGLKENVVIGDSVPVGTG 1354
>RPOC2_MESVI (Q9MUS7) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1223 Score = 155 bits (393), Expect = 6e-38 Identities = 78/145 (53%), Positives = 105/145 (72%) Frame = -2 Query: 471 WGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVF 292 +G A+ + + ++ LVN++Q VY++QGV I ++HIE+I+RQ+TSKV + E G Sbjct: 1035 YGIQKAAKKSFEKLQLFLVNEVQSVYKAQGVHISDKHIEVIVRQMTSKVMIEEGG-DTTL 1093 Query: 291 LPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALR 112 LPGELI L R E R + Y+ I+LGIT+ASLNT+SFIS ASFQET RVL KAA+ Sbjct: 1094 LPGELIELHRIENMNRNVSVHAKYKPIVLGITKASLNTESFISAASFQETTRVLTKAAIE 1153 Query: 111 GRIDWLKGLKENVVLGGIIPVGTGF 37 G+ DWL+GLKENV++G +IP GTGF Sbjct: 1154 GKTDWLRGLKENVIIGRLIPAGTGF 1178
>RPOC2_GLOVI (Q7NDF7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1262 Score = 155 bits (393), Expect = 6e-38 Identities = 81/135 (60%), Positives = 104/135 (77%), Gaps = 4/135 (2%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 LVN++Q+VYRSQGV+IH++HIEII+RQ+TSKVRV EDG FLPGEL+ L + E+ A Sbjct: 1090 LVNEVQQVYRSQGVEIHDKHIEIIVRQMTSKVRV-EDGGDTTFLPGELVELRQIEQVNEA 1148 Query: 240 LDESIYYRA----ILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 + + A +LLGIT+ASLNT SFIS ASFQET RVL +AA+ G+ DWL+GLKENV Sbjct: 1149 MAVTGGAPADCTPVLLGITKASLNTDSFISAASFQETTRVLTEAAIEGKSDWLRGLKENV 1208 Query: 72 VLGGIIPVGTGFQKF 28 ++G +IP GTGF + Sbjct: 1209 IIGRLIPAGTGFNAY 1223
>RPOC2_SYNEL (Q8DL57) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1324 Score = 152 bits (385), Expect = 5e-37 Identities = 79/161 (49%), Positives = 111/161 (68%), Gaps = 4/161 (2%) Frame = -2 Query: 474 PWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNV 295 P G L A+ ++ + + LVN++Q VY SQG++I ++HIE+I+RQ+TSKVR+ + G + Sbjct: 1080 PQGLLKAAQTSLEKVQSFLVNEVQSVYLSQGIEIADKHIEVIVRQMTSKVRIDDAG-DTI 1138 Query: 294 FLPGELIGLLRAERAGRAL----DESIYYRAILLGITRASLNTQSFISEASFQETARVLA 127 L GEL+ L +AE+A + Y +LLGIT+ASLNT SFIS ASFQET RVL Sbjct: 1139 LLSGELMTLRQAEQANEPMALTGGAPAQYTPVLLGITKASLNTDSFISAASFQETTRVLT 1198 Query: 126 KAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHRSPQDK 4 +AA+ G+ DWL+GLKENV++G +IP GTGF + S D+ Sbjct: 1199 EAAIEGKSDWLRGLKENVIIGRLIPAGTGFNSYEESSNGDE 1239
>RPOC2_PORPU (P51250) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1224 Score = 152 bits (383), Expect = 8e-37 Identities = 75/146 (51%), Positives = 110/146 (75%), Gaps = 4/146 (2%) Frame = -2 Query: 453 AELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELI 274 A L+ + ++ LV ++Q VY+SQGV I ++HIE+I+RQ+TSKV++ E+G +LPGEL+ Sbjct: 1031 ARLSFQEIQLLLVKEVQLVYQSQGVNISDKHIEVIVRQMTSKVKI-ENGEETGYLPGELV 1089 Query: 273 GLLRAERAGRALDE----SIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGR 106 L + E+ +++ + YR ILLGIT+ASLNT+SFIS ASFQET +VL +AA+ G+ Sbjct: 1090 ELQKIEQTNKSMTSRNKLNASYRPILLGITQASLNTESFISAASFQETTKVLTEAAISGK 1149 Query: 105 IDWLKGLKENVVLGGIIPVGTGFQKF 28 +DWL+GLKENV++G +IP GTGF + Sbjct: 1150 LDWLRGLKENVIIGRLIPAGTGFNMY 1175
>RPOC2_PROMT (Q46J24) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1369 Score = 150 bits (380), Expect = 2e-36 Identities = 79/147 (53%), Positives = 107/147 (72%), Gaps = 4/147 (2%) Frame = -2 Query: 453 AELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELI 274 A+ IA+ + +V+++Q VY+SQGV I ++HIE+I+RQ+TSKVR+ ED FLPGELI Sbjct: 1117 AQEAIAKLQHRMVSEVQNVYKSQGVAIDDKHIEVIVRQMTSKVRI-EDAGDTTFLPGELI 1175 Query: 273 GLLRAERAGRALDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGR 106 L + E +A+ + + +LLGIT+ASLNT SFIS ASFQET RVL +AA+ G+ Sbjct: 1176 ELRQVEDTNQAISITGGAPSEFTPVLLGITKASLNTDSFISAASFQETTRVLTEAAIEGK 1235 Query: 105 IDWLKGLKENVVLGGIIPVGTGFQKFV 25 DWL+GLKENV++G +IP GTGF FV Sbjct: 1236 SDWLRGLKENVIIGRLIPAGTGFSGFV 1262
>RPOC2_PROMP (Q7V008) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1366 Score = 150 bits (379), Expect = 2e-36 Identities = 78/147 (53%), Positives = 107/147 (72%), Gaps = 4/147 (2%) Frame = -2 Query: 453 AELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELI 274 A+ +I++ + +VN++Q VY+SQGV I ++HIE+I+RQ+TSKVR+ ED LPGELI Sbjct: 1115 AQESISKLQRKMVNEVQNVYKSQGVAISDKHIEVIVRQMTSKVRI-EDAGDTTLLPGELI 1173 Query: 273 GLLRAERAGRALDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGR 106 L + E +A+ + + +LLGIT+ASLNT SFIS ASFQET RVL +AA+ G+ Sbjct: 1174 ELRQVEDTNQAMSITGGAPAEFTPVLLGITKASLNTDSFISAASFQETTRVLTEAAIEGK 1233 Query: 105 IDWLKGLKENVVLGGIIPVGTGFQKFV 25 DWL+GLKENV++G +IP GTGF FV Sbjct: 1234 SDWLRGLKENVIIGRLIPAGTGFSGFV 1260
>RPOC2_GUITH (O78483) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1286 Score = 149 bits (377), Expect = 4e-36 Identities = 79/155 (50%), Positives = 108/155 (69%), Gaps = 4/155 (2%) Frame = -2 Query: 453 AELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELI 274 A+L++ + + LV+++QKVY+SQ V I ++HIE+I+RQ+TSKV+V EDG LPGEL+ Sbjct: 1082 AKLSLQKVQTYLVDEVQKVYQSQNVDISDKHIEVIVRQMTSKVKV-EDGGDTTLLPGELV 1140 Query: 273 GLLRAERAGRAL----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGR 106 L + E A+ Y ILLGIT+ASLNT SFIS ASFQET RVL +AA+ G+ Sbjct: 1141 ELQQIENINEAMMLTKGVPATYCPILLGITKASLNTDSFISAASFQETTRVLTEAAIEGK 1200 Query: 105 IDWLKGLKENVVLGGIIPVGTGFQKFVHRSPQDKN 1 DWL+GLKENV++G +IP GTGF + + K+ Sbjct: 1201 ADWLRGLKENVIIGRLIPAGTGFNAYNEQHKSSKS 1235
>RPOC2_PROMA (Q7VA30) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1367 Score = 148 bits (374), Expect = 9e-36 Identities = 78/147 (53%), Positives = 105/147 (71%), Gaps = 4/147 (2%) Frame = -2 Query: 453 AELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELI 274 A+ IA+ + LV ++Q VY+SQGV I ++HIE+I+RQ+TSKVR+ ED LPGELI Sbjct: 1115 AQEAIAKLQHRLVTEVQNVYKSQGVAIDDKHIEVIVRQMTSKVRI-EDAGDTTLLPGELI 1173 Query: 273 GLLRAERAGRALDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGR 106 + + E +A+ + + +LLGIT+ASLNT SFIS ASFQET RVL +AA+ G+ Sbjct: 1174 EIRQVEDTNQAISITGGAPAEFTPVLLGITKASLNTDSFISAASFQETTRVLTEAAIEGK 1233 Query: 105 IDWLKGLKENVVLGGIIPVGTGFQKFV 25 DWL+GLKENV++G +IP GTGF FV Sbjct: 1234 SDWLRGLKENVIIGRLIPAGTGFSGFV 1260
>RPOC2_SYNPX (Q7U8K2) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1364 Score = 148 bits (373), Expect = 1e-35 Identities = 85/171 (49%), Positives = 109/171 (63%), Gaps = 4/171 (2%) Frame = -2 Query: 528 LERRIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEII 349 LE ED R P + A+ IA + LV ++Q VY+SQGV I ++HIE+I Sbjct: 1098 LECFFEDLRSRKP--------LMDAAQEAIANLQHRLVTEVQNVYKSQGVSIDDKHIEVI 1149 Query: 348 IRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DESIYYRAILLGITRASLN 181 +RQ+TSKVRV ED LPGELI L + E +A+ + +LLGIT+ASLN Sbjct: 1150 VRQMTSKVRV-EDAGDTTLLPGELIELRQVEDTNQAMAITGGAPAEFTPVLLGITKASLN 1208 Query: 180 TQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKF 28 T SFIS ASFQET RVL +AA+ G+ DWL+GLKENV++G +IP GTGF F Sbjct: 1209 TDSFISAASFQETTRVLTEAAIEGKSDWLRGLKENVIIGRLIPAGTGFSGF 1259
>RPOC2_SYNY3 (P73334) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1317 Score = 147 bits (371), Expect = 2e-35 Identities = 74/132 (56%), Positives = 98/132 (74%), Gaps = 4/132 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 LVN++Q VY+SQGV I ++HIE+I+RQ+T+KVR+ +DG LPGEL+ L + E+ A Sbjct: 1093 LVNEVQTVYQSQGVDISDKHIEVIVRQMTAKVRI-DDGGDTTMLPGELVELRQVEQVNEA 1151 Query: 240 L----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 + Y +LLGIT+ASLNT SFIS ASFQET RVL +AA+ G+ DWL+GLKENV Sbjct: 1152 MGITGSAPARYTPVLLGITKASLNTDSFISAASFQETTRVLTEAAIEGKSDWLRGLKENV 1211 Query: 72 VLGGIIPVGTGF 37 ++G +IP GTGF Sbjct: 1212 IIGRLIPAGTGF 1223
>RPOC2_PROMM (Q7V5P3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1374 Score = 147 bits (371), Expect = 2e-35 Identities = 78/146 (53%), Positives = 103/146 (70%), Gaps = 4/146 (2%) Frame = -2 Query: 453 AELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELI 274 A+ IA+ + LV ++Q VY+SQGV I ++HIE+I+RQ+TSKVR+ ED LPGELI Sbjct: 1123 AQEAIAKLQHRLVTEVQNVYKSQGVSIDDKHIEVIVRQMTSKVRI-EDAGDTTLLPGELI 1181 Query: 273 GLLRAERAGRAL----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGR 106 L + E +A+ + +LLGIT+ASLNT SFIS ASFQET RVL +AA+ G+ Sbjct: 1182 ELRQVEDTNQAMAITGGAPSEFTPVLLGITKASLNTDSFISAASFQETTRVLTEAAIEGK 1241 Query: 105 IDWLKGLKENVVLGGIIPVGTGFQKF 28 DWL+GLKENV++G +IP GTGF F Sbjct: 1242 SDWLRGLKENVIIGRLIPAGTGFSGF 1267
>RPOC2_ANASP (P22705) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1355 Score = 147 bits (370), Expect = 3e-35 Identities = 76/156 (48%), Positives = 106/156 (67%), Gaps = 4/156 (2%) Frame = -2 Query: 483 LGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGM 304 LG G A + + + LVN++Q VY+SQG+ I ++HIE+I+RQ+T+KVR+ +DG Sbjct: 1105 LGSEDGVYACASHALQKVQTFLVNEVQMVYQSQGIDIADKHIEVIVRQMTNKVRI-DDGG 1163 Query: 303 SNVFLPGELIGLLRAERAGRAL----DESIYYRAILLGITRASLNTQSFISEASFQETAR 136 LPGEL+ L + E+ A+ Y +LLGIT+ASLNT SFIS ASFQET R Sbjct: 1164 DTTMLPGELVELRQVEQVNEAMAITGGARAQYTPVLLGITKASLNTDSFISAASFQETTR 1223 Query: 135 VLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKF 28 VL +AA+ G+ DWL+GLKENV++G +IP GTG+ + Sbjct: 1224 VLTEAAIEGKSDWLRGLKENVIIGRLIPAGTGYNTY 1259
>RPOC2_GRATL (Q6B8R6) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1228 Score = 144 bits (362), Expect = 2e-34 Identities = 76/142 (53%), Positives = 108/142 (76%), Gaps = 5/142 (3%) Frame = -2 Query: 447 LTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGL 268 L++ ++ LV ++Q VY+SQGV+I ++HIE+I+RQ+TSKV++ E+G LPGE+I L Sbjct: 1037 LSLLILQLYLVKELQLVYQSQGVEIADKHIEVIVRQMTSKVKI-ENGGDTDHLPGEIIEL 1095 Query: 267 LRAERAGRAL-----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRI 103 + E +AL +E++YY ILLGIT+ASLNT+SFIS ASFQET +VL AA+ ++ Sbjct: 1096 QKIEMLNKALRLASKEEALYY-PILLGITKASLNTESFISAASFQETTKVLTDAAISCKL 1154 Query: 102 DWLKGLKENVVLGGIIPVGTGF 37 DWL+GLKENV++G +IP GTGF Sbjct: 1155 DWLRGLKENVIIGRLIPAGTGF 1176
>RPOC2_CYACA (Q9TM34) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1269 Score = 143 bits (361), Expect = 3e-34 Identities = 71/134 (52%), Positives = 103/134 (76%), Gaps = 4/134 (2%) Frame = -2 Query: 429 RISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 250 R+ L+ +IQ+VY+SQ ++I+++HIE+IIRQ+TSKV + E G + +F PGEL+ + + E+ Sbjct: 1098 RLELLKEIQQVYQSQKIEINDKHIEVIIRQMTSKVLIQERGDTTLF-PGELVTINQIEKI 1156 Query: 249 GRAL----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLK 82 A+ + Y+ +LLGIT+ASLNT SFIS ASFQET R+L +AA+ G++DWLKGLK Sbjct: 1157 NSAIIAVNKKEAKYKPVLLGITKASLNTDSFISAASFQETTRILTEAAIEGKVDWLKGLK 1216 Query: 81 ENVVLGGIIPVGTG 40 ENV++G +IP GTG Sbjct: 1217 ENVIIGRLIPGGTG 1230
>RPOC2_EUGGR (P23581) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 830 Score = 143 bits (360), Expect = 4e-34 Identities = 74/143 (51%), Positives = 104/143 (72%) Frame = -2 Query: 462 LIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPG 283 L+ A + + L++ +Q VY+SQGV+I ++HIE+I++Q+TSKV V+ G S+ F+ G Sbjct: 688 LVAARKSFEVIQKYLIDGVQTVYKSQGVKIADKHIELIVKQITSKVIVTNPGDSS-FMVG 746 Query: 282 ELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRI 103 + + L E + L SI Y I++G+TR SL++QSFI++ASFQET RVL KAAL+GR Sbjct: 747 DFLDLNLVEVLNKRLVNSIVYEPIIMGLTRFSLSSQSFIAQASFQETTRVLTKAALQGRA 806 Query: 102 DWLKGLKENVVLGGIIPVGTGFQ 34 DWL GLKEN+VLG IIP GTGF+ Sbjct: 807 DWLSGLKENLVLGNIIPAGTGFK 829
>RPOC2_SYNP6 (Q5MZ21) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1318 Score = 142 bits (357), Expect = 8e-34 Identities = 71/135 (52%), Positives = 98/135 (72%), Gaps = 4/135 (2%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 LVN++Q VY+SQG+ I ++HIE+I+RQ+TSKVR+ +DG + LPGEL L + Sbjct: 1106 LVNEVQSVYQSQGIDISDKHIEVIVRQMTSKVRI-DDGGDTIMLPGELHELREVYNSNNT 1164 Query: 240 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 + + + +LLGIT+ASLNT SFIS ASFQET RVL +AA+ G+ DWL+GLKENV Sbjct: 1165 MALTGMAPAQFTPVLLGITKASLNTNSFISAASFQETTRVLTEAAIEGKSDWLRGLKENV 1224 Query: 72 VLGGIIPVGTGFQKF 28 ++G +IP GTGF+ + Sbjct: 1225 IIGRLIPAGTGFKAY 1239
>RPOC2_CYAPA (P48120) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1265 Score = 142 bits (357), Expect = 8e-34 Identities = 75/144 (52%), Positives = 102/144 (70%), Gaps = 4/144 (2%) Frame = -2 Query: 447 LTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGL 268 L++ + + LV+++Q VY+SQG+ I ++HIEIII+Q+T+KV++ E G LP ELI Sbjct: 1082 LSLQKIQQFLVSEVQSVYQSQGIDISDKHIEIIIKQMTNKVKIEEGG-DTTLLPNELIEF 1140 Query: 267 LRAERAGRALDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRID 100 + E+ S Y ILLGIT++SLNTQSFIS ASFQET RVLAKAA+ G+ID Sbjct: 1141 QQIEKMNEKFSTSNGQLASYTPILLGITKSSLNTQSFISAASFQETTRVLAKAAVEGKID 1200 Query: 99 WLKGLKENVVLGGIIPVGTGFQKF 28 L+GLKENV++G +IP GTGF + Sbjct: 1201 QLRGLKENVIIGNLIPAGTGFSAY 1224
>RPOC_CYAME (Q85FR6) Bifunctional DNA-directed RNA polymerase beta' and beta''| chain (EC 2.7.7.6) (PEP) [Includes: DNA-directed RNA polymerase beta' chain (Plastid-encoded RNA polymerase beta' subunit) (RNA polymerase beta' subunit); DNA-directed RNA poly Length = 1676 Score = 136 bits (342), Expect = 5e-32 Identities = 73/147 (49%), Positives = 109/147 (74%), Gaps = 1/147 (0%) Frame = -2 Query: 477 VPW-GFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMS 301 VP+ G + A + A+ + L++++Q+VY+SQGV I ++HIE+I+RQ+TSKV + + G S Sbjct: 1532 VPYRGMVEAARESFAKLQAKLLHQVQQVYKSQGVDIADKHIEVILRQMTSKVILDDPGDS 1591 Query: 300 NVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKA 121 + FLPG+L+ L A + + + +LLGIT+A+LNT+SFIS ASFQET R+LA+A Sbjct: 1592 D-FLPGQLVYLNEI-----ASYKHVIFHPVLLGITKAALNTESFISAASFQETTRILAQA 1645 Query: 120 ALRGRIDWLKGLKENVVLGGIIPVGTG 40 A+ G+ID L+GLKENV++G +IP GTG Sbjct: 1646 AMEGQIDQLRGLKENVIMGRLIPAGTG 1672
>RPOC2_EMIHU (Q4G3A5) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1267 Score = 134 bits (336), Expect = 2e-31 Identities = 72/145 (49%), Positives = 99/145 (68%), Gaps = 7/145 (4%) Frame = -2 Query: 450 ELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIG 271 +L+ ++ L+ +IQ+ YRSQGV I ++H+E+I++Q+TSKV + + G + FLPGE++ Sbjct: 1087 KLSFKLLQLFLIGEIQRTYRSQGVDIADKHVELIVKQMTSKVCIEDSG-TTTFLPGEVLN 1145 Query: 270 L-------LRAERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALR 112 L AE G Y +LLGIT+ASLN+ SFIS ASFQET RVL +AA+ Sbjct: 1146 FQKMADIALVAENKGEIPPS---YVPLLLGITKASLNSDSFISAASFQETTRVLTEAAIE 1202 Query: 111 GRIDWLKGLKENVVLGGIIPVGTGF 37 GR DWL GLKENV++G +IP GTGF Sbjct: 1203 GRKDWLTGLKENVIIGRLIPAGTGF 1227
>RPOC2_ASTLO (P58132) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 817 Score = 130 bits (328), Expect = 2e-30 Identities = 63/129 (48%), Positives = 92/129 (71%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 ++ +IQ +Y+ QG+ I N+HIEIII+Q+TSKV + G S F+ GE+ + + + Sbjct: 690 ILEEIQSIYKEQGINISNKHIEIIIKQMTSKVIIKNAGNSP-FIVGEICNINSIDNLNKN 748 Query: 240 LDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGG 61 + I Y ILLGIT++SL TQSFIS+ +FQE+ + L KAA+ +IDWL GLKEN++LG Sbjct: 749 YEHKIIYEPILLGITKSSLYTQSFISQITFQESIKSLIKAAIENKIDWLYGLKENLILGN 808 Query: 60 IIPVGTGFQ 34 +IP+GTGF+ Sbjct: 809 LIPIGTGFK 817
>RPOC2_ODOSI (P49468) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1481 Score = 129 bits (323), Expect = 7e-30 Identities = 64/131 (48%), Positives = 93/131 (70%), Gaps = 4/131 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 ++N +Q VY+SQGV I ++H+E+II+Q+T+KV ++ G +++ LP E+I L E + Sbjct: 1335 ILNSVQSVYKSQGVSIADKHLEVIIKQMTTKVLITHQGNTSL-LPREVIDLYHIEYINKI 1393 Query: 240 L----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 Y +LLGIT+A+LN SFIS ASFQET RVL KAA+ GR+DWL+GLKEN+ Sbjct: 1394 ARIHKKHPALYVPLLLGITKAALNNPSFISAASFQETTRVLTKAAIEGRVDWLRGLKENI 1453 Query: 72 VLGGIIPVGTG 40 ++G ++P GTG Sbjct: 1454 IIGHLMPAGTG 1464
>RPOC_PHOPR (Q6LLW3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1404 Score = 128 bits (321), Expect = 1e-29 Identities = 72/141 (51%), Positives = 97/141 (68%), Gaps = 4/141 (2%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 +VN++Q+VYR QGV+I+++HIE IIRQ+ KV + + G S FLPGE + R A R Sbjct: 1233 IVNEVQEVYRLQGVKINDKHIETIIRQMLRKVTIVKAGDSE-FLPGEQVEFSRVNIANRK 1291 Query: 240 LD----ESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 L+ + + + LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV Sbjct: 1292 LEADGKDIVTFSRDLLGITKASLATESFISAASFQETTRVLTEAAVSGKRDPLRGLKENV 1351 Query: 72 VLGGIIPVGTGFQKFVHRSPQ 10 ++G +IP GTGF R Q Sbjct: 1352 IVGRLIPAGTGFSYHQRRQNQ 1372
>RPOC_THETN (Q8R7U7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1183 Score = 127 bits (320), Expect = 2e-29 Identities = 68/135 (50%), Positives = 100/135 (74%), Gaps = 4/135 (2%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGR- 244 L+ ++QKVYR QGV+I+++HIEIIIRQ+ KV+V + G +++ LPGELI + + E + Sbjct: 1022 LLQEVQKVYRLQGVEINDKHIEIIIRQMMKKVKVEDPGDTSM-LPGELIDMFKFEEENKK 1080 Query: 243 ALDESIYY---RAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 A+++ + R LLGIT+A+L T SF+S ASFQET RVL AA++G++D L GLKENV Sbjct: 1081 AIEKGLRPATGRRALLGITKAALATDSFLSAASFQETTRVLTDAAIKGKVDPLIGLKENV 1140 Query: 72 VLGGIIPVGTGFQKF 28 ++G +IP GTG ++ Sbjct: 1141 IIGKLIPAGTGLSRY 1155
>RPOC_CARHZ (Q3A9Q8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1152 Score = 127 bits (319), Expect = 2e-29 Identities = 66/151 (43%), Positives = 104/151 (68%), Gaps = 4/151 (2%) Frame = -2 Query: 441 IAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLR 262 I +++ L+ ++QKVYR QGV+I+++HIE++IRQ+ KV++ + G +++ LPG L+ + Sbjct: 1001 IEGAQLYLLQEVQKVYRMQGVEINDKHIEVVIRQMLRKVKIEDSGDTDL-LPGSLVDIFE 1059 Query: 261 AERAGRAL----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWL 94 E + + + +LLGIT+ASL T SF+S ASFQET RVL +AA++G++D L Sbjct: 1060 FEDENAKVIAKGGKPATAKRVLLGITKASLATDSFLSAASFQETTRVLTEAAIKGKVDPL 1119 Query: 93 KGLKENVVLGGIIPVGTGFQKFVHRSPQDKN 1 GLKENV++G +IP GTG ++ + Q KN Sbjct: 1120 LGLKENVIIGKLIPAGTGMARYRNIMVQAKN 1150
>RPOC_PSEAE (Q9HWC9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1399 Score = 127 bits (319), Expect = 2e-29 Identities = 72/141 (51%), Positives = 97/141 (68%), Gaps = 4/141 (2%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRA----ER 253 +VN+IQ VYR QGV+I+++HIE I+RQ+ KV VSE G S+ F+ G+ + L + E+ Sbjct: 1233 IVNEIQDVYRLQGVKINDKHIETILRQMLRKVEVSESGDSS-FIKGDQVELTQVLEENEQ 1291 Query: 252 AGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 G Y +LLGIT+ASL+T+SFIS ASFQET RVL +AA+ G+ D+L+GLKENV Sbjct: 1292 LGTEDKFPAKYERVLLGITKASLSTESFISAASFQETTRVLTEAAVTGKRDFLRGLKENV 1351 Query: 72 VLGGIIPVGTGFQKFVHRSPQ 10 V+G +IP GTG R Q Sbjct: 1352 VVGRLIPAGTGLAYHSERKRQ 1372
>RPOC_CLOPE (Q93R87) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1178 Score = 127 bits (319), Expect = 2e-29 Identities = 67/139 (48%), Positives = 98/139 (70%), Gaps = 4/139 (2%) Frame = -2 Query: 432 SRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLL---- 265 +R L++++QKVYR QGV I+++H+E+++RQ+T K++V+E G +N+ LPG +I + Sbjct: 1019 AREYLLSEVQKVYRLQGVDINDKHLEVVVRQMTRKIKVTEQGDTNL-LPGVMIDMFDFRA 1077 Query: 264 RAERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGL 85 ER E +LLGIT+A+L T SF+S ASFQET RVL AA++G+ID L GL Sbjct: 1078 ENERVESFGGEKAQGDIVLLGITKAALATDSFLSAASFQETTRVLTDAAIKGKIDPLVGL 1137 Query: 84 KENVVLGGIIPVGTGFQKF 28 KENV++G +IP GTG K+ Sbjct: 1138 KENVIIGKLIPAGTGMMKY 1156
>RPOC_METCA (Q60A05) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1400 Score = 127 bits (319), Expect = 2e-29 Identities = 72/143 (50%), Positives = 96/143 (67%), Gaps = 4/143 (2%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 LV +IQ VYR QGV+I+++HIE+IIRQ+ KV +++ G S+ FL GE + R Sbjct: 1232 LVKEIQDVYRLQGVKINDKHIEVIIRQMLRKVEITDPGDSS-FLRGEQVDRSRLLEENDR 1290 Query: 240 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 L+E Y +LLGIT+ASL+T+SFIS ASFQET RVL +AA+RG D L+GLKENV Sbjct: 1291 LEEEGKVPACYEPVLLGITKASLSTESFISAASFQETTRVLTEAAIRGSTDRLQGLKENV 1350 Query: 72 VLGGIIPVGTGFQKFVHRSPQDK 4 ++G +IP GTG R + K Sbjct: 1351 IVGRLIPAGTGLAYHTERRERAK 1373
>RPOC_FUSNN (Q8RHI7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1319 Score = 126 bits (316), Expect = 5e-29 Identities = 64/135 (47%), Positives = 96/135 (71%), Gaps = 4/135 (2%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 ++ +Q+VYR QGV ++++HIEII++Q+ KVR+ + G S +FL E+I + + Sbjct: 1170 ILESVQQVYRDQGVTVNDKHIEIIVKQMFRKVRIIDSGAS-LFLEDEVIEKRVVDLENKK 1228 Query: 240 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 L+E I Y ++ GIT+A++NT SFIS ASFQET +VL+ AA+ G++D+L+GLKENV Sbjct: 1229 LEEQGKALIKYEPVIQGITKAAVNTGSFISAASFQETTKVLSNAAIEGKVDYLEGLKENV 1288 Query: 72 VLGGIIPVGTGFQKF 28 +LG IP GTGF K+ Sbjct: 1289 ILGKKIPAGTGFNKY 1303
>RPOC_PSEPU (P19176) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1398 Score = 125 bits (315), Expect = 6e-29 Identities = 72/135 (53%), Positives = 98/135 (72%), Gaps = 3/135 (2%) Frame = -2 Query: 414 NKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRA--ERAGRA 241 N+IQ VYR QGV+I+++HIE I+RQ+ KVR+SE G S+ F+ G+ + A ERA + Sbjct: 1235 NEIQDVYRLQGVKINDKHIETILRQMLRKVRISESGDSS-FIKGDQMEYPGAGRERASAS 1293 Query: 240 LDESIY-YRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLG 64 D+ I + +LLGIT+ASL+T+SFIS ASFQET RVL +AA+ G+ D+L+GLKENVV+G Sbjct: 1294 EDKFISKFTRVLLGITKASLSTESFISAASFQETTRVLTEAAVTGKRDYLRGLKENVVVG 1353 Query: 63 GIIPVGTGFQKFVHR 19 +IP GTG R Sbjct: 1354 RLIPAGTGLAYHTER 1368
>RPOC_STRPM (Q48VR0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1213 Score = 125 bits (314), Expect = 8e-29 Identities = 69/144 (47%), Positives = 99/144 (68%), Gaps = 4/144 (2%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 L+ ++QKVYRSQGV+I ++H+E+++RQ+ KVRV + G +++ LPG L+ + A + Sbjct: 1050 LLAEVQKVYRSQGVEIGDKHVEVMVRQMLRKVRVMDPGDTDL-LPGTLMDISDFTDANKD 1108 Query: 240 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 + S R +L+GIT+ASL T SF+S ASFQET RVL AA+RG+ D L GLKENV Sbjct: 1109 IVISGGIPATSRPVLMGITKASLETNSFLSAASFQETTRVLTDAAIRGKKDHLLGLKENV 1168 Query: 72 VLGGIIPVGTGFQKFVHRSPQDKN 1 ++G IIP GTG ++ + PQ N Sbjct: 1169 IIGKIIPAGTGMARYRNIEPQAMN 1192
>RPOC_STRP8 (Q8P2Y2) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1213 Score = 125 bits (314), Expect = 8e-29 Identities = 69/144 (47%), Positives = 99/144 (68%), Gaps = 4/144 (2%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 L+ ++QKVYRSQGV+I ++H+E+++RQ+ KVRV + G +++ LPG L+ + A + Sbjct: 1050 LLAEVQKVYRSQGVEIGDKHVEVMVRQMLRKVRVMDPGDTDL-LPGTLMDISDFTDANKD 1108 Query: 240 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 + S R +L+GIT+ASL T SF+S ASFQET RVL AA+RG+ D L GLKENV Sbjct: 1109 IVISGGIPATSRPVLMGITKASLETNSFLSAASFQETTRVLTDAAIRGKKDHLLGLKENV 1168 Query: 72 VLGGIIPVGTGFQKFVHRSPQDKN 1 ++G IIP GTG ++ + PQ N Sbjct: 1169 IIGKIIPAGTGMARYRNIEPQAMN 1192
>RPOC_STRP6 (Q5XE96) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1213 Score = 125 bits (314), Expect = 8e-29 Identities = 69/144 (47%), Positives = 99/144 (68%), Gaps = 4/144 (2%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 L+ ++QKVYRSQGV+I ++H+E+++RQ+ KVRV + G +++ LPG L+ + A + Sbjct: 1050 LLAEVQKVYRSQGVEIGDKHVEVMVRQMLRKVRVMDPGDTDL-LPGTLMDISDFTDANKD 1108 Query: 240 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 + S R +L+GIT+ASL T SF+S ASFQET RVL AA+RG+ D L GLKENV Sbjct: 1109 IVISGGIPATSRPVLMGITKASLETNSFLSAASFQETTRVLTDAAIRGKKDHLLGLKENV 1168 Query: 72 VLGGIIPVGTGFQKFVHRSPQDKN 1 ++G IIP GTG ++ + PQ N Sbjct: 1169 IIGKIIPAGTGMARYRNIEPQAMN 1192
>RPOC_STRP1 (P0C0E0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1213 Score = 125 bits (314), Expect = 8e-29 Identities = 69/144 (47%), Positives = 99/144 (68%), Gaps = 4/144 (2%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 L+ ++QKVYRSQGV+I ++H+E+++RQ+ KVRV + G +++ LPG L+ + A + Sbjct: 1050 LLAEVQKVYRSQGVEIGDKHVEVMVRQMLRKVRVMDPGDTDL-LPGTLMDISDFTDANKD 1108 Query: 240 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 + S R +L+GIT+ASL T SF+S ASFQET RVL AA+RG+ D L GLKENV Sbjct: 1109 IVISGGIPATSRPVLMGITKASLETNSFLSAASFQETTRVLTDAAIRGKKDHLLGLKENV 1168 Query: 72 VLGGIIPVGTGFQKFVHRSPQDKN 1 ++G IIP GTG ++ + PQ N Sbjct: 1169 IIGKIIPAGTGMARYRNIEPQAMN 1192
>RPOC_LACSS (Q38UQ3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1214 Score = 125 bits (314), Expect = 8e-29 Identities = 68/143 (47%), Positives = 98/143 (68%), Gaps = 6/143 (4%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 L++++QKVYR QG++I ++H+E+++RQ+ KVRV + G + + LPG L+ + +E R Sbjct: 1049 LLHEVQKVYRMQGIEIGDKHVEVMVRQMLRKVRVMDPGDTEI-LPGTLMDI--SEFTDRN 1105 Query: 240 LDESIY------YRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKE 79 D I R +LLGIT+ASL T SF+S ASFQET RVL A++RG+ D L GLKE Sbjct: 1106 HDTLISGGVPATCRPVLLGITKASLETNSFLSAASFQETTRVLTDASIRGKSDPLLGLKE 1165 Query: 78 NVVLGGIIPVGTGFQKFVHRSPQ 10 NV++G I+P GTG K+ H P+ Sbjct: 1166 NVIIGKIVPAGTGMAKYRHMEPK 1188
>RPOC_STRP3 (Q8K8W2) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1207 Score = 125 bits (314), Expect = 8e-29 Identities = 69/144 (47%), Positives = 99/144 (68%), Gaps = 4/144 (2%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 L+ ++QKVYRSQGV+I ++H+E+++RQ+ KVRV + G +++ LPG L+ + A + Sbjct: 1050 LLAEVQKVYRSQGVEIGDKHVEVMVRQMLRKVRVMDPGDTDL-LPGTLMDISDFTDANKD 1108 Query: 240 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 + S R +L+GIT+ASL T SF+S ASFQET RVL AA+RG+ D L GLKENV Sbjct: 1109 IVISGGIPATSRPVLMGITKASLETNSFLSAASFQETTRVLTDAAIRGKKDHLLGLKENV 1168 Query: 72 VLGGIIPVGTGFQKFVHRSPQDKN 1 ++G IIP GTG ++ + PQ N Sbjct: 1169 IIGKIIPAGTGMARYRNIEPQAMN 1192
>RPOC_RHILO (Q98N65) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1398 Score = 125 bits (313), Expect = 1e-28 Identities = 67/131 (51%), Positives = 92/131 (70%), Gaps = 4/131 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 LVN+IQ+VYR QGV I+++HIE+I+RQ+ KV ++ G S ++PG+ + ++ E Sbjct: 1227 LVNEIQEVYRLQGVSINDKHIEVIVRQMLQKVEITTQGDST-YIPGDHVDVIELEEVNER 1285 Query: 240 LDESIYYRA----ILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 L E A +LLGIT+ASL T SFIS ASFQET RVL +AA+ G+ D L+GLKENV Sbjct: 1286 LIEDGKKPAEGQPVLLGITKASLQTPSFISAASFQETTRVLTEAAVAGKTDMLQGLKENV 1345 Query: 72 VLGGIIPVGTG 40 ++G +IP GTG Sbjct: 1346 IVGRLIPAGTG 1356
>RPOC_NOCFA (Q5YPE1) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1317 Score = 125 bits (313), Expect = 1e-28 Identities = 68/140 (48%), Positives = 94/140 (67%), Gaps = 4/140 (2%) Frame = -2 Query: 435 QSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAE 256 Q ++ LV+++Q+VYRSQGV IH++HIE+I+RQ+ +V + + G S FLPG L E Sbjct: 1129 QVQVHLVHEVQEVYRSQGVSIHDKHIEVIVRQMLRRVTIIDSG-STEFLPGSLTERAEFE 1187 Query: 255 RAGRAL----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKG 88 A R + E R +L+GIT+ASL T S++S ASFQET RVL AA+ R D L G Sbjct: 1188 AANRRVVAEGGEPASGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLIG 1247 Query: 87 LKENVVLGGIIPVGTGFQKF 28 LKENV++G +IP GTG ++ Sbjct: 1248 LKENVIIGKLIPAGTGINRY 1267
>RPOC_ZYMMO (Q5NPK4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1391 Score = 124 bits (312), Expect = 1e-28 Identities = 70/131 (53%), Positives = 93/131 (70%), Gaps = 4/131 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 LV++IQ+VYR QGV+I+++HIE I+RQ+ KV ++ G S +FLPGE + E Sbjct: 1217 LVSEIQEVYRLQGVKINDKHIETIVRQMLLKVEITHAGDS-IFLPGEQVEKEDFEAVNAK 1275 Query: 240 LD----ESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 L+ E ILLGIT+ASL T+SFIS ASFQET RVL +AA++G+ID L GLKENV Sbjct: 1276 LESQGQEPAQATPILLGITKASLQTRSFISAASFQETTRVLTEAAVQGKIDTLSGLKENV 1335 Query: 72 VLGGIIPVGTG 40 ++G +IP GTG Sbjct: 1336 IVGRLIPAGTG 1346
>RPOC2_NEPOL (Q9TL04) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1463 Score = 124 bits (311), Expect = 2e-28 Identities = 68/135 (50%), Positives = 92/135 (68%) Frame = -2 Query: 444 TIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLL 265 T+ ++ ++ ++Q VYRSQGVQI ++H+EII ++TS+V V E LPGE+I Sbjct: 1210 TMRAMQVLILRRVQLVYRSQGVQISDKHLEIISLRMTSRVLV-EKAYGTGILPGEIIEKR 1268 Query: 264 RAERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGL 85 RA+ + I Y I+LGIT+ASL T+ FIS ASFQET RVL +A L+G+ DWL GL Sbjct: 1269 RADMLNQGRTR-IRYCPIVLGITKASLTTKGFISSASFQETTRVLTQAVLQGKSDWLLGL 1327 Query: 84 KENVVLGGIIPVGTG 40 KENV+LG +IP G G Sbjct: 1328 KENVILGRLIPAGVG 1342
>RPOC_ANAMM (Q5PBG3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1415 Score = 124 bits (311), Expect = 2e-28 Identities = 67/132 (50%), Positives = 93/132 (70%), Gaps = 4/132 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 ++++IQ+VYR QGV+I N+HIE+I+RQ+ KV +++ G ++L GE G R R Sbjct: 1224 MISEIQQVYRLQGVRIDNKHIEVILRQMLQKVEITDPG-DTMYLVGEHAGREEVMRLNRK 1282 Query: 240 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 L+E+ + Y IL GIT+ASL+T SFIS ASFQET +VL +AA G+ D L GLKENV Sbjct: 1283 LEEAGKKPVAYVPILQGITKASLDTNSFISAASFQETTKVLTEAAFSGKEDPLYGLKENV 1342 Query: 72 VLGGIIPVGTGF 37 ++G +IP GTGF Sbjct: 1343 IVGRLIPAGTGF 1354
>RPOC_MYCTU (P0A674) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1316 Score = 124 bits (311), Expect = 2e-28 Identities = 67/138 (48%), Positives = 92/138 (66%), Gaps = 4/138 (2%) Frame = -2 Query: 429 RISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 250 +I LV ++Q+VYR+QGV IH++HIE+I+RQ+ +V + + G S FLPG LI E Sbjct: 1131 QIHLVREVQEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSG-STEFLPGSLIDRAEFEAE 1189 Query: 249 GRAL----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLK 82 R + E R +L+GIT+ASL T S++S ASFQET RVL AA+ R D L GLK Sbjct: 1190 NRRVVAEGGEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLK 1249 Query: 81 ENVVLGGIIPVGTGFQKF 28 ENV++G +IP GTG ++ Sbjct: 1250 ENVIIGKLIPAGTGINRY 1267
>RPOC_MYCPA (Q73SE3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1316 Score = 124 bits (311), Expect = 2e-28 Identities = 67/138 (48%), Positives = 92/138 (66%), Gaps = 4/138 (2%) Frame = -2 Query: 429 RISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 250 +I LV ++Q+VYR+QGV IH++HIE+I+RQ+ +V + + G S FLPG LI E Sbjct: 1131 QIHLVREVQEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSG-STEFLPGSLIDRAEFEAE 1189 Query: 249 GRAL----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLK 82 R + E R +L+GIT+ASL T S++S ASFQET RVL AA+ R D L GLK Sbjct: 1190 NRRVVAEGGEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLK 1249 Query: 81 ENVVLGGIIPVGTGFQKF 28 ENV++G +IP GTG ++ Sbjct: 1250 ENVIIGKLIPAGTGINRY 1267
>RPOC_MYCLE (P30761) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1316 Score = 124 bits (311), Expect = 2e-28 Identities = 67/138 (48%), Positives = 92/138 (66%), Gaps = 4/138 (2%) Frame = -2 Query: 429 RISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 250 +I LV ++Q+VYR+QGV IH++HIE+I+RQ+ +V + + G S FLPG LI E Sbjct: 1131 QIHLVREVQEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSG-STEFLPGSLIDRAEFESE 1189 Query: 249 GRAL----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLK 82 R + E R +L+GIT+ASL T S++S ASFQET RVL AA+ R D L GLK Sbjct: 1190 NRRVVAESGEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLK 1249 Query: 81 ENVVLGGIIPVGTGFQKF 28 ENV++G +IP GTG ++ Sbjct: 1250 ENVIIGKLIPAGTGINRY 1267
>RPOC_MYCBO (P0A675) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1316 Score = 124 bits (311), Expect = 2e-28 Identities = 67/138 (48%), Positives = 92/138 (66%), Gaps = 4/138 (2%) Frame = -2 Query: 429 RISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 250 +I LV ++Q+VYR+QGV IH++HIE+I+RQ+ +V + + G S FLPG LI E Sbjct: 1131 QIHLVREVQEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSG-STEFLPGSLIDRAEFEAE 1189 Query: 249 GRAL----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLK 82 R + E R +L+GIT+ASL T S++S ASFQET RVL AA+ R D L GLK Sbjct: 1190 NRRVVAEGGEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLK 1249 Query: 81 ENVVLGGIIPVGTGFQKF 28 ENV++G +IP GTG ++ Sbjct: 1250 ENVIIGKLIPAGTGINRY 1267
>RPOC_LACLA (Q9CEN7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1207 Score = 124 bits (311), Expect = 2e-28 Identities = 69/144 (47%), Positives = 99/144 (68%), Gaps = 8/144 (5%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 L+ ++QK YRSQGV+I ++HIE+++RQ+ KVRV ++G +++ LPG L+ + E A Sbjct: 1049 LLGEVQKTYRSQGVEIGDKHIEVMVRQMLRKVRVMDNGSTDI-LPGTLMDISDFE----A 1103 Query: 240 LDESIYY--------RAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGL 85 L+E+ R +L+GIT+ASL T SF+S ASFQET RVL AA+RG+ D L GL Sbjct: 1104 LNETALLNGEMPATGRPVLMGITKASLETNSFLSAASFQETTRVLTDAAIRGKEDHLLGL 1163 Query: 84 KENVVLGGIIPVGTGFQKFVHRSP 13 KENV++G IIP GTG ++ + P Sbjct: 1164 KENVIIGKIIPAGTGMFRYRNIEP 1187
>RPOC_CORJK (Q4JT33) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1323 Score = 124 bits (311), Expect = 2e-28 Identities = 66/135 (48%), Positives = 93/135 (68%), Gaps = 4/135 (2%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELI----GLLRAER 253 L+N++QKVYR QGV IH++HIEII+RQ+ +V V + G S FLPG L+ + ++ Sbjct: 1142 LINEVQKVYRDQGVAIHDKHIEIIVRQMLRRVTVIDSG-STEFLPGSLVDHADAVAASKE 1200 Query: 252 AGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 A + + RA ++GIT+ASL T+S++S ASFQET RVL AA+ R D L GLKENV Sbjct: 1201 AVKTGGRPVEVRAEIMGITKASLATESWLSAASFQETTRVLTDAAINKRSDKLIGLKENV 1260 Query: 72 VLGGIIPVGTGFQKF 28 ++G +IP GTG ++ Sbjct: 1261 IIGKLIPAGTGISRY 1275
>RPOC_DESVH (Q727C6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1385 Score = 124 bits (310), Expect = 2e-28 Identities = 69/138 (50%), Positives = 98/138 (71%), Gaps = 5/138 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELI--GLLRAERAG 247 L ++IQ+VYR QGV I ++HIE+I+RQ+ KV V + G FL GE + G R E Sbjct: 1221 LTDEIQEVYRFQGVAIDDKHIEVIVRQMLKKVTVLDPG-GTTFLVGEQVDKGEFRVENT- 1278 Query: 246 RALDES---IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKEN 76 RA+ E ++LGIT+ASL T SFIS ASFQET +VL +A+LRG++D+L+GLKEN Sbjct: 1279 RAMGEGRTPATAEPLVLGITQASLTTSSFISAASFQETTKVLTEASLRGKMDYLRGLKEN 1338 Query: 75 VVLGGIIPVGTGFQKFVH 22 V++G +IP GTG++++V+ Sbjct: 1339 VIVGRLIPAGTGYREYVN 1356
>RPOC_PELUB (Q4FLL3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1389 Score = 124 bits (310), Expect = 2e-28 Identities = 65/133 (48%), Positives = 92/133 (69%), Gaps = 4/133 (3%) Frame = -2 Query: 417 VNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL 238 VN++Q+VYR QGV I+++HIE I+RQ+ KV + E G S+ +LPGE+I ++ + L Sbjct: 1226 VNQVQEVYRLQGVIINDKHIETILRQMLKKVEIKESGDSS-YLPGEMIDRIKFDNTNEKL 1284 Query: 237 ----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVV 70 +L+GIT+ASL T+SFIS ASFQET RVL AA++G++D L GLKENV+ Sbjct: 1285 VAEGKNPASGERVLMGITKASLQTESFISAASFQETTRVLTDAAIKGKVDPLNGLKENVI 1344 Query: 69 LGGIIPVGTGFQK 31 +G ++P GTG K Sbjct: 1345 VGRLVPAGTGHIK 1357
>RPOC_TROWT (Q820D6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1286 Score = 123 bits (309), Expect = 3e-28 Identities = 69/143 (48%), Positives = 95/143 (66%), Gaps = 4/143 (2%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 LVN +Q+VYRSQGV IHN+HIE+I+RQ+ KV V + G +++ LPGELI R + R Sbjct: 1099 LVNGVQQVYRSQGVPIHNKHIEVIVRQMLRKVTVVDHGDTSM-LPGELIDQSRYQELNRE 1157 Query: 240 LD----ESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 ++ R + GIT+ASL T+S++S ASFQET RVL +A + GR D L GLKENV Sbjct: 1158 AQAEGRKTASARQEVTGITKASLATESWLSAASFQETTRVLTQAVISGRRDPLIGLKENV 1217 Query: 72 VLGGIIPVGTGFQKFVHRSPQDK 4 ++G +IP GTG + P+ + Sbjct: 1218 IIGNLIPAGTGLSVYRDVEPEPR 1240
>RPOC_TROW8 (Q820D9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1286 Score = 123 bits (309), Expect = 3e-28 Identities = 69/143 (48%), Positives = 95/143 (66%), Gaps = 4/143 (2%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 LVN +Q+VYRSQGV IHN+HIE+I+RQ+ KV V + G +++ LPGELI R + R Sbjct: 1099 LVNGVQQVYRSQGVPIHNKHIEVIVRQMLRKVTVVDHGDTSM-LPGELIDQSRYQELNRE 1157 Query: 240 LD----ESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 ++ R + GIT+ASL T+S++S ASFQET RVL +A + GR D L GLKENV Sbjct: 1158 AQAEGRKTASARQEVTGITKASLATESWLSAASFQETTRVLTQAVISGRRDPLIGLKENV 1217 Query: 72 VLGGIIPVGTGFQKFVHRSPQDK 4 ++G +IP GTG + P+ + Sbjct: 1218 IIGNLIPAGTGLSVYRDVEPEPR 1240
>RPOC_PHOLL (Q7N9A3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1406 Score = 123 bits (309), Expect = 3e-28 Identities = 66/132 (50%), Positives = 93/132 (70%), Gaps = 4/132 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 + N++Q+VYR QGV+I+++HIE+I+RQ+ K + G S FL GE + R + A R Sbjct: 1233 ITNEVQEVYRLQGVKINDKHIEVIVRQMLRKATIESAGSSE-FLEGEQVEYARVKVANRK 1291 Query: 240 LDE----SIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 L++ + Y LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV Sbjct: 1292 LEQEGKVAATYGRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENV 1351 Query: 72 VLGGIIPVGTGF 37 ++G +IP GTG+ Sbjct: 1352 IVGRLIPAGTGY 1363
>RPOC_ENTFA (Q82Z41) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1217 Score = 123 bits (309), Expect = 3e-28 Identities = 68/144 (47%), Positives = 98/144 (68%), Gaps = 6/144 (4%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 L+ ++Q+VYR QGV+I ++HIE+++RQ+ K+RV + G + + LPG L+ + AE R Sbjct: 1048 LLREVQRVYRMQGVEIGDKHIEVMVRQMLRKIRVMDPGDTEI-LPGTLMDI--AEFKDRN 1104 Query: 240 LDESIY------YRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKE 79 D + R +LLGIT+ASL T SF+S ASFQET RVL AA+RG+ D L GLKE Sbjct: 1105 YDTLVAGGVPATSRPVLLGITKASLETNSFLSAASFQETTRVLTDAAIRGKKDPLLGLKE 1164 Query: 78 NVVLGGIIPVGTGFQKFVHRSPQD 7 NV++G IIP GTG ++ + P++ Sbjct: 1165 NVIIGKIIPAGTGMARYRNMEPKE 1188
>RPOC_PSEPF (Q3K5Y2) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1399 Score = 123 bits (308), Expect = 4e-28 Identities = 70/131 (53%), Positives = 96/131 (73%), Gaps = 4/131 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPG---ELIGLLRAERA 250 +VN+IQ VYR QGV+I+++HIE I+RQ+ KV +SE G S+ F+ G EL +L Sbjct: 1233 IVNEIQDVYRLQGVKINDKHIETILRQMLRKVEISESGDSS-FIKGDQMELTHVLVENER 1291 Query: 249 GRALDESIY-YRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 A D+ + + +LLGIT+ASL+T+SFIS ASFQET RVL +AA+ G+ D+L+GLKENV Sbjct: 1292 LNAEDKFVSKFTRVLLGITKASLSTESFISAASFQETTRVLTEAAVTGKRDYLRGLKENV 1351 Query: 72 VLGGIIPVGTG 40 V+G +IP GTG Sbjct: 1352 VVGRLIPAGTG 1362
>RPOC_BRUSU (Q8G070) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1400 Score = 123 bits (308), Expect = 4e-28 Identities = 66/131 (50%), Positives = 92/131 (70%), Gaps = 4/131 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 LVN+IQ+VYR QGV I+++HIE+I+RQ+ KV ++E G + ++PG+ + + E Sbjct: 1228 LVNEIQEVYRLQGVLINDKHIEVIVRQMLQKVEITESGDTG-YIPGDHVDRIELEEINER 1286 Query: 240 LDESIYY----RAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 L E +LLGIT+ASL T SFIS ASFQET RVL +AA+ G++D L+GLKENV Sbjct: 1287 LIEEGKKPGSGNPVLLGITKASLQTPSFISAASFQETTRVLTEAAVAGKMDTLQGLKENV 1346 Query: 72 VLGGIIPVGTG 40 ++G +IP GTG Sbjct: 1347 IVGRLIPAGTG 1357
>RPOC_BRUME (Q8YHP7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1400 Score = 123 bits (308), Expect = 4e-28 Identities = 66/131 (50%), Positives = 92/131 (70%), Gaps = 4/131 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 LVN+IQ+VYR QGV I+++HIE+I+RQ+ KV ++E G + ++PG+ + + E Sbjct: 1228 LVNEIQEVYRLQGVLINDKHIEVIVRQMLQKVEITESGDTG-YIPGDHVDRIELEEINER 1286 Query: 240 LDESIYY----RAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 L E +LLGIT+ASL T SFIS ASFQET RVL +AA+ G++D L+GLKENV Sbjct: 1287 LIEEGKKPGSGNPVLLGITKASLQTPSFISAASFQETTRVLTEAAVAGKMDTLQGLKENV 1346 Query: 72 VLGGIIPVGTG 40 ++G +IP GTG Sbjct: 1347 IVGRLIPAGTG 1357
>RPOC_BRUAB (Q57CP9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1400 Score = 123 bits (308), Expect = 4e-28 Identities = 66/131 (50%), Positives = 92/131 (70%), Gaps = 4/131 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 LVN+IQ+VYR QGV I+++HIE+I+RQ+ KV ++E G + ++PG+ + + E Sbjct: 1228 LVNEIQEVYRLQGVLINDKHIEVIVRQMLQKVEITESGDTG-YIPGDHVDRIELEEINER 1286 Query: 240 LDESIYY----RAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 L E +LLGIT+ASL T SFIS ASFQET RVL +AA+ G++D L+GLKENV Sbjct: 1287 LIEEGKKPGSGNPVLLGITKASLQTPSFISAASFQETTRVLTEAAVAGKMDTLQGLKENV 1346 Query: 72 VLGGIIPVGTG 40 ++G +IP GTG Sbjct: 1347 IVGRLIPAGTG 1357
>RPOC_THEFY (Q47LI6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1291 Score = 123 bits (308), Expect = 4e-28 Identities = 66/135 (48%), Positives = 95/135 (70%), Gaps = 4/135 (2%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 LV+++Q+VY+SQGV IH++HIEII+RQ+ +V V E G + + LPGE+I + E R Sbjct: 1109 LVSEVQEVYKSQGVSIHDKHIEIIVRQMLKRVNVLESGDTKL-LPGEMIERPKFEEINRR 1167 Query: 240 L----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 + + R +LLGIT+ASL T+S++S ASFQET RVL + A+ G+ D L GLKENV Sbjct: 1168 VVAEGGQPASARPVLLGITKASLATESWLSAASFQETTRVLTENAIHGKSDPLLGLKENV 1227 Query: 72 VLGGIIPVGTGFQKF 28 ++G +IP GTG ++ Sbjct: 1228 IIGKLIPAGTGMPQY 1242
>RPOC_COLP3 (Q47UW0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1406 Score = 122 bits (307), Expect = 5e-28 Identities = 65/139 (46%), Positives = 96/139 (69%), Gaps = 4/139 (2%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 +VN++Q+VYR QGV+I+++HIE+I+RQ+ K + + G S FL GE + + R + R Sbjct: 1232 IVNEVQEVYRLQGVKINDKHIEVIVRQMIRKCEILDAGDST-FLKGEQVEVARVNISNRE 1290 Query: 240 LD----ESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 L+ + Y ++GIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV Sbjct: 1291 LEAEGKQPAEYEMQMMGITKASLATESFISAASFQETTRVLTEAAVAGKKDGLRGLKENV 1350 Query: 72 VLGGIIPVGTGFQKFVHRS 16 ++G +IP GTG+ R+ Sbjct: 1351 IVGRLIPAGTGYSYHQERA 1369
>RPOC_PSESM (Q889X7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1399 Score = 122 bits (307), Expect = 5e-28 Identities = 68/131 (51%), Positives = 94/131 (71%), Gaps = 4/131 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRA----ER 253 +VN+IQ VYR QGV+I+++HIE I+RQ+ KV ++E G S+ F+ G+ + L ER Sbjct: 1233 IVNEIQDVYRLQGVKINDKHIETILRQMLRKVEIAESGDSS-FIKGDQMELTHVLVENER 1291 Query: 252 AGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 G + +LLGIT+ASL+T+SFIS ASFQET RVL +AA+ G+ D+L+GLKENV Sbjct: 1292 LGADDKFVSKFTRVLLGITKASLSTESFISAASFQETTRVLTEAAVTGKRDYLRGLKENV 1351 Query: 72 VLGGIIPVGTG 40 V+G +IP GTG Sbjct: 1352 VVGRLIPAGTG 1362
>RPOC_PSEPK (Q88QP1) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1399 Score = 122 bits (307), Expect = 5e-28 Identities = 68/131 (51%), Positives = 96/131 (73%), Gaps = 4/131 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRA--ERAG 247 +VN+IQ VYR QGV+I+++HIE I+RQ+ KV +SE G S+ F+ G+ + L + E Sbjct: 1233 IVNEIQDVYRLQGVKINDKHIETILRQMLRKVEISESGDSS-FIKGDQMELTQVLVENER 1291 Query: 246 RALDESIY--YRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 A ++ + +LLGIT+ASL+T+SFIS ASFQET RVL +AA+ G+ D+L+GLKENV Sbjct: 1292 LASEDKFISKFTRVLLGITKASLSTESFISAASFQETTRVLTEAAVTGKRDYLRGLKENV 1351 Query: 72 VLGGIIPVGTG 40 V+G +IP GTG Sbjct: 1352 VVGRLIPAGTG 1362
>RPOC_SHISS (Q3YUZ6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 122 bits (307), Expect = 5e-28 Identities = 67/132 (50%), Positives = 93/132 (70%), Gaps = 4/132 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 +VN++Q VYR QGV+I+++HIE+I+RQ+ K + G S+ FL GE + R + A R Sbjct: 1233 IVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSD-FLEGEQVEYSRVKIANRE 1291 Query: 240 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 L+ + Y LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV Sbjct: 1292 LEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENV 1351 Query: 72 VLGGIIPVGTGF 37 ++G +IP GTG+ Sbjct: 1352 IVGRLIPAGTGY 1363
>RPOC_SHIFL (P0A8T9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 122 bits (307), Expect = 5e-28 Identities = 67/132 (50%), Positives = 93/132 (70%), Gaps = 4/132 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 +VN++Q VYR QGV+I+++HIE+I+RQ+ K + G S+ FL GE + R + A R Sbjct: 1233 IVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSD-FLEGEQVEYSRVKIANRE 1291 Query: 240 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 L+ + Y LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV Sbjct: 1292 LEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENV 1351 Query: 72 VLGGIIPVGTGF 37 ++G +IP GTG+ Sbjct: 1352 IVGRLIPAGTGY 1363
>RPOC_SHIDS (Q32AG0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 122 bits (307), Expect = 5e-28 Identities = 67/132 (50%), Positives = 93/132 (70%), Gaps = 4/132 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 +VN++Q VYR QGV+I+++HIE+I+RQ+ K + G S+ FL GE + R + A R Sbjct: 1233 IVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSD-FLEGEQVEYSRVKIANRE 1291 Query: 240 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 L+ + Y LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV Sbjct: 1292 LEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENV 1351 Query: 72 VLGGIIPVGTGF 37 ++G +IP GTG+ Sbjct: 1352 IVGRLIPAGTGY 1363
>RPOC_SHIBS (Q31U09) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 122 bits (307), Expect = 5e-28 Identities = 67/132 (50%), Positives = 93/132 (70%), Gaps = 4/132 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 +VN++Q VYR QGV+I+++HIE+I+RQ+ K + G S+ FL GE + R + A R Sbjct: 1233 IVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSD-FLEGEQVEYSRVKIANRE 1291 Query: 240 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 L+ + Y LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV Sbjct: 1292 LEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENV 1351 Query: 72 VLGGIIPVGTGF 37 ++G +IP GTG+ Sbjct: 1352 IVGRLIPAGTGY 1363
>RPOC_ECOLI (P0A8T7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 122 bits (307), Expect = 5e-28 Identities = 67/132 (50%), Positives = 93/132 (70%), Gaps = 4/132 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 +VN++Q VYR QGV+I+++HIE+I+RQ+ K + G S+ FL GE + R + A R Sbjct: 1233 IVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSD-FLEGEQVEYSRVKIANRE 1291 Query: 240 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 L+ + Y LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV Sbjct: 1292 LEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENV 1351 Query: 72 VLGGIIPVGTGF 37 ++G +IP GTG+ Sbjct: 1352 IVGRLIPAGTGY 1363
>RPOC_ECOL6 (Q8FB83) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 122 bits (307), Expect = 5e-28 Identities = 67/132 (50%), Positives = 93/132 (70%), Gaps = 4/132 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 +VN++Q VYR QGV+I+++HIE+I+RQ+ K + G S+ FL GE + R + A R Sbjct: 1233 IVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSD-FLEGEQVEYSRVKIANRE 1291 Query: 240 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 L+ + Y LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV Sbjct: 1292 LEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENV 1351 Query: 72 VLGGIIPVGTGF 37 ++G +IP GTG+ Sbjct: 1352 IVGRLIPAGTGY 1363
>RPOC_ECO57 (P0A8T8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 122 bits (307), Expect = 5e-28 Identities = 67/132 (50%), Positives = 93/132 (70%), Gaps = 4/132 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 +VN++Q VYR QGV+I+++HIE+I+RQ+ K + G S+ FL GE + R + A R Sbjct: 1233 IVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSD-FLEGEQVEYSRVKIANRE 1291 Query: 240 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 L+ + Y LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV Sbjct: 1292 LEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENV 1351 Query: 72 VLGGIIPVGTGF 37 ++G +IP GTG+ Sbjct: 1352 IVGRLIPAGTGY 1363
>RPOC_STAHJ (Q4L3K4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1206 Score = 122 bits (307), Expect = 5e-28 Identities = 69/153 (45%), Positives = 101/153 (66%), Gaps = 4/153 (2%) Frame = -2 Query: 474 PWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNV 295 P FL A L +S L+ ++QKVYR QGV+I ++H+E+++RQ+ KVR+ E G + + Sbjct: 1035 PKNFLAVAGLNATESY--LLKEVQKVYRMQGVEIDDKHVEVMVRQMLRKVRIIEAGDTKL 1092 Query: 294 FLPGELIGLLRAERAGRALDES----IYYRAILLGITRASLNTQSFISEASFQETARVLA 127 LPG L+ + A R + + +LLGIT+ASL T+SF+S ASFQET RVL Sbjct: 1093 -LPGSLVDIHSFTDANREAFKERKRPATAKPVLLGITKASLETESFLSAASFQETTRVLT 1151 Query: 126 KAALRGRIDWLKGLKENVVLGGIIPVGTGFQKF 28 AA++G+ D L GLKENV++G +IP GTG +++ Sbjct: 1152 DAAIKGKRDDLLGLKENVIIGKLIPAGTGMRRY 1184
>RPOC_STRT2 (Q5M2F6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1212 Score = 122 bits (307), Expect = 5e-28 Identities = 68/140 (48%), Positives = 97/140 (69%), Gaps = 4/140 (2%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 L+ ++QKVYRSQGV+I ++H+E+++RQ+ KVRV + G +++ LPG L+ + A + Sbjct: 1050 LLAEVQKVYRSQGVEIGDKHVEVMVRQMLRKVRVMDPGDTDL-LPGTLMDISDFTDANKD 1108 Query: 240 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 + S R +LLGIT+ASL T SF+S ASFQET RVL AA+RG+ D L GLKENV Sbjct: 1109 IVISGGVPATSRPVLLGITKASLETNSFLSAASFQETTRVLTDAAIRGKKDHLIGLKENV 1168 Query: 72 VLGGIIPVGTGFQKFVHRSP 13 ++G IIP GTG ++ + P Sbjct: 1169 IIGKIIPAGTGMARYRNIEP 1188
>RPOC_STRT1 (Q5LXV4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1212 Score = 122 bits (307), Expect = 5e-28 Identities = 68/140 (48%), Positives = 97/140 (69%), Gaps = 4/140 (2%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 L+ ++QKVYRSQGV+I ++H+E+++RQ+ KVRV + G +++ LPG L+ + A + Sbjct: 1050 LLAEVQKVYRSQGVEIGDKHVEVMVRQMLRKVRVMDPGDTDL-LPGTLMDISDFTDANKD 1108 Query: 240 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 + S R +LLGIT+ASL T SF+S ASFQET RVL AA+RG+ D L GLKENV Sbjct: 1109 IVISGGVPATSRPVLLGITKASLETNSFLSAASFQETTRVLTDAAIRGKKDHLIGLKENV 1168 Query: 72 VLGGIIPVGTGFQKFVHRSP 13 ++G IIP GTG ++ + P Sbjct: 1169 IIGKIIPAGTGMARYRNIEP 1188
>RPOC_VIBVY (Q7MGS0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1400 Score = 122 bits (307), Expect = 5e-28 Identities = 67/132 (50%), Positives = 93/132 (70%), Gaps = 4/132 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 + N++Q+VYR QGV+I+++HIE I+RQ+ K ++ G S FLPGE + + + A R Sbjct: 1232 IANEVQEVYRLQGVKINDKHIETIVRQMLRKCTITHAGDSE-FLPGETVEYSQVKIANRN 1290 Query: 240 LD----ESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 L+ E + LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV Sbjct: 1291 LEAEGKEPARFERELLGITKASLATESFISAASFQETTRVLTEAAVSGKRDDLRGLKENV 1350 Query: 72 VLGGIIPVGTGF 37 ++G +IP GTGF Sbjct: 1351 IVGRLIPAGTGF 1362
>RPOC_VIBVU (Q8DD19) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1400 Score = 122 bits (307), Expect = 5e-28 Identities = 67/132 (50%), Positives = 93/132 (70%), Gaps = 4/132 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 + N++Q+VYR QGV+I+++HIE I+RQ+ K ++ G S FLPGE + + + A R Sbjct: 1232 IANEVQEVYRLQGVKINDKHIETIVRQMLRKCTITHAGDSE-FLPGETVEYSQVKIANRN 1290 Query: 240 LD----ESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 L+ E + LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV Sbjct: 1291 LEAEGKEPARFERELLGITKASLATESFISAASFQETTRVLTEAAVSGKRDDLRGLKENV 1350 Query: 72 VLGGIIPVGTGF 37 ++G +IP GTGF Sbjct: 1351 IVGRLIPAGTGF 1362
>RPOC_BACHK (Q6HPR5) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1203 Score = 122 bits (307), Expect = 5e-28 Identities = 64/135 (47%), Positives = 95/135 (70%), Gaps = 4/135 (2%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 L+ ++QKVYR QGV+I ++H+E+++RQ+ KVRVS+ G ++V LPG L+ + + A Sbjct: 1046 LLREVQKVYRMQGVEIGDKHVEVMVRQMLRKVRVSDAGETDV-LPGTLLDIHQFTDANAK 1104 Query: 240 L----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 + + R +LLGIT+ASL T SF+S ASFQET RVL AA++G+ D L GLKENV Sbjct: 1105 VLLQGKQPATARPVLLGITKASLETDSFLSAASFQETTRVLTDAAIKGKRDELLGLKENV 1164 Query: 72 VLGGIIPVGTGFQKF 28 ++G ++P GTG ++ Sbjct: 1165 IIGKLVPAGTGMNRY 1179
>RPOC_BACCZ (Q63H97) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1203 Score = 122 bits (307), Expect = 5e-28 Identities = 64/135 (47%), Positives = 95/135 (70%), Gaps = 4/135 (2%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 L+ ++QKVYR QGV+I ++H+E+++RQ+ KVRVS+ G ++V LPG L+ + + A Sbjct: 1046 LLREVQKVYRMQGVEIGDKHVEVMVRQMLRKVRVSDAGETDV-LPGTLLDIHQFTDANAK 1104 Query: 240 L----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 + + R +LLGIT+ASL T SF+S ASFQET RVL AA++G+ D L GLKENV Sbjct: 1105 VLLQGKQPATARPVLLGITKASLETDSFLSAASFQETTRVLTDAAIKGKRDELLGLKENV 1164 Query: 72 VLGGIIPVGTGFQKF 28 ++G ++P GTG ++ Sbjct: 1165 IIGKLVPAGTGMNRY 1179
>RPOC_BACCR (Q81J47) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1203 Score = 122 bits (307), Expect = 5e-28 Identities = 64/135 (47%), Positives = 95/135 (70%), Gaps = 4/135 (2%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 L+ ++QKVYR QGV+I ++H+E+++RQ+ KVRVS+ G ++V LPG L+ + + A Sbjct: 1046 LLREVQKVYRMQGVEIGDKHVEVMVRQMLRKVRVSDAGETDV-LPGTLLDIHQFTDANAK 1104 Query: 240 L----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 + + R +LLGIT+ASL T SF+S ASFQET RVL AA++G+ D L GLKENV Sbjct: 1105 VLLQGKQPATARPVLLGITKASLETDSFLSAASFQETTRVLTDAAIKGKRDELLGLKENV 1164 Query: 72 VLGGIIPVGTGFQKF 28 ++G ++P GTG ++ Sbjct: 1165 IIGKLVPAGTGMNRY 1179
>RPOC_BACC1 (Q73FA3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1203 Score = 122 bits (307), Expect = 5e-28 Identities = 64/135 (47%), Positives = 95/135 (70%), Gaps = 4/135 (2%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 L+ ++QKVYR QGV+I ++H+E+++RQ+ KVRVS+ G ++V LPG L+ + + A Sbjct: 1046 LLREVQKVYRMQGVEIGDKHVEVMVRQMLRKVRVSDAGETDV-LPGTLLDIHQFTDANAK 1104 Query: 240 L----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 + + R +LLGIT+ASL T SF+S ASFQET RVL AA++G+ D L GLKENV Sbjct: 1105 VLLQGKQPATARPVLLGITKASLETDSFLSAASFQETTRVLTDAAIKGKRDELLGLKENV 1164 Query: 72 VLGGIIPVGTGFQKF 28 ++G ++P GTG ++ Sbjct: 1165 IIGKLVPAGTGMNRY 1179
>RPOC_BACAN (P77819) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1203 Score = 122 bits (307), Expect = 5e-28 Identities = 64/135 (47%), Positives = 95/135 (70%), Gaps = 4/135 (2%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 L+ ++QKVYR QGV+I ++H+E+++RQ+ KVRVS+ G ++V LPG L+ + + A Sbjct: 1046 LLREVQKVYRMQGVEIGDKHVEVMVRQMLRKVRVSDAGETDV-LPGTLLDIHQFTDANAK 1104 Query: 240 L----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 + + R +LLGIT+ASL T SF+S ASFQET RVL AA++G+ D L GLKENV Sbjct: 1105 VLLQGKQPATARPVLLGITKASLETDSFLSAASFQETTRVLTDAAIKGKRDELLGLKENV 1164 Query: 72 VLGGIIPVGTGFQKF 28 ++G ++P GTG ++ Sbjct: 1165 IIGKLVPAGTGMNRY 1179
>RPOC_BARQU (Q6FZM0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1402 Score = 122 bits (307), Expect = 5e-28 Identities = 67/131 (51%), Positives = 91/131 (69%), Gaps = 4/131 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 LVN+IQ+VYR QGV I+++HIE+I+RQ+ KV ++E G S ++PG+ + + + Sbjct: 1229 LVNEIQEVYRLQGVLINDKHIEVIVRQMLQKVEITESGDSG-YIPGDHVDRIELDEINDN 1287 Query: 240 L----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 L ILLGIT+ASL T SFIS ASFQET RVL +AA+ G+ID L+GLKENV Sbjct: 1288 LIAEGKRPASGNPILLGITKASLQTPSFISAASFQETTRVLTEAAVSGKIDTLQGLKENV 1347 Query: 72 VLGGIIPVGTG 40 ++G +IP GTG Sbjct: 1348 IVGRLIPAGTG 1358
>RPOC_BARHE (Q6G3X4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1402 Score = 122 bits (307), Expect = 5e-28 Identities = 67/131 (51%), Positives = 91/131 (69%), Gaps = 4/131 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 LVN+IQ+VYR QGV I+++HIE+I+RQ+ KV ++E G S ++PG+ + + + Sbjct: 1229 LVNEIQEVYRLQGVLINDKHIEVIVRQMLQKVEITESGDSG-YIPGDHVDRIELDEINDN 1287 Query: 240 L----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 L ILLGIT+ASL T SFIS ASFQET RVL +AA+ G+ID L+GLKENV Sbjct: 1288 LLAEGKRPASGNPILLGITKASLQTPSFISAASFQETTRVLTEAAVSGKIDTLQGLKENV 1347 Query: 72 VLGGIIPVGTG 40 ++G +IP GTG Sbjct: 1348 IVGRLIPAGTG 1358
>RPOC_BIFLO (Q8G515) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1345 Score = 122 bits (306), Expect = 7e-28 Identities = 63/139 (45%), Positives = 97/139 (69%), Gaps = 4/139 (2%) Frame = -2 Query: 432 SRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAER 253 +++++V ++ VYRSQGV IH++HIE+I+ Q+T +V + + G +++ LPGEL+ R Sbjct: 1135 AQVNIVEEVHTVYRSQGVDIHDKHIEVIVHQMTRRVTIIDSGDTDL-LPGELVDNARFRE 1193 Query: 252 AGRALDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGL 85 R + ++ R L+GIT+ASL T S++S ASFQET RVL +AAL ++D LKGL Sbjct: 1194 INRNIVKNGGRPAVGRPALMGITKASLATDSWLSAASFQETTRVLTEAALSEKVDDLKGL 1253 Query: 84 KENVVLGGIIPVGTGFQKF 28 KENV++G +IP GTG ++ Sbjct: 1254 KENVIIGKLIPAGTGLARY 1272
>RPOBC_WOLPM (Q73IW9) Bifunctional DNA-directed RNA polymerase, beta and beta'| chain (EC 2.7.7.6) [Includes: DNA-directed RNA polymerase beta chain (Transcriptase beta chain) (RNA polymerase beta subunit); DNA-directed RNA polymerase beta' chain (Transcri Length = 2837 Score = 122 bits (306), Expect = 7e-28 Identities = 65/131 (49%), Positives = 91/131 (69%), Gaps = 4/131 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 ++++IQ+VYR QGV+I N+H+E+I++Q+ KV +++ G ++L GE I L +R A Sbjct: 2654 MISEIQQVYRLQGVRIDNKHLEVILKQMLQKVEITDPG-DTMYLVGESIDKLEVDRENDA 2712 Query: 240 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 + S +Y IL GITRASL T SFIS ASFQET +VL +AA G+ D L GLKENV Sbjct: 2713 MSNSGKRPTHYLPILQGITRASLETSSFISAASFQETTKVLTEAAFCGKSDPLSGLKENV 2772 Query: 72 VLGGIIPVGTG 40 ++G +IP GTG Sbjct: 2773 IVGRLIPAGTG 2783
>RPOC_STRA5 (Q8E238) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1216 Score = 122 bits (306), Expect = 7e-28 Identities = 67/140 (47%), Positives = 97/140 (69%), Gaps = 4/140 (2%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 L+ ++QKVYRSQGV+I ++H+E+++RQ+ KVRV + G +++ LPG L+ + A + Sbjct: 1050 LLAEVQKVYRSQGVEIGDKHVEVMVRQMLRKVRVMDPGDTDL-LPGTLMDISDFTDANKD 1108 Query: 240 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 + S R +L+GIT+ASL T SF+S ASFQET RVL AA+RG+ D L GLKENV Sbjct: 1109 IVISGGIPATSRPVLMGITKASLETNSFLSAASFQETTRVLTDAAIRGKKDHLLGLKENV 1168 Query: 72 VLGGIIPVGTGFQKFVHRSP 13 ++G IIP GTG ++ + P Sbjct: 1169 IIGKIIPAGTGMARYRNIEP 1188
>RPOC_STRA3 (Q8E7J7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1216 Score = 122 bits (306), Expect = 7e-28 Identities = 67/140 (47%), Positives = 97/140 (69%), Gaps = 4/140 (2%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 L+ ++QKVYRSQGV+I ++H+E+++RQ+ KVRV + G +++ LPG L+ + A + Sbjct: 1050 LLAEVQKVYRSQGVEIGDKHVEVMVRQMLRKVRVMDPGDTDL-LPGTLMDISDFTDANKD 1108 Query: 240 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 + S R +L+GIT+ASL T SF+S ASFQET RVL AA+RG+ D L GLKENV Sbjct: 1109 IVISGGIPATSRPVLMGITKASLETNSFLSAASFQETTRVLTDAAIRGKKDHLLGLKENV 1168 Query: 72 VLGGIIPVGTGFQKFVHRSP 13 ++G IIP GTG ++ + P Sbjct: 1169 IIGKIIPAGTGMARYRNIEP 1188
>RPOC_STRA1 (Q3K3L1) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1216 Score = 122 bits (306), Expect = 7e-28 Identities = 67/140 (47%), Positives = 97/140 (69%), Gaps = 4/140 (2%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 L+ ++QKVYRSQGV+I ++H+E+++RQ+ KVRV + G +++ LPG L+ + A + Sbjct: 1050 LLAEVQKVYRSQGVEIGDKHVEVMVRQMLRKVRVMDPGDTDL-LPGTLMDISDFTDANKD 1108 Query: 240 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 + S R +L+GIT+ASL T SF+S ASFQET RVL AA+RG+ D L GLKENV Sbjct: 1109 IVISGGIPATSRPVLMGITKASLETNSFLSAASFQETTRVLTDAAIRGKKDHLLGLKENV 1168 Query: 72 VLGGIIPVGTGFQKFVHRSP 13 ++G IIP GTG ++ + P Sbjct: 1169 IIGKIIPAGTGMARYRNIEP 1188
>RPOC_LISMO (Q8YA96) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1201 Score = 122 bits (306), Expect = 7e-28 Identities = 64/135 (47%), Positives = 93/135 (68%), Gaps = 4/135 (2%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 L+ ++QKVYR QGV+I ++H+E+++RQ+ K+RV + G +N+ LPG L+ + A R Sbjct: 1047 LLAEVQKVYRMQGVEIGDKHVEVMVRQMLRKIRVMDTGDTNI-LPGTLMDIHTFTEANRE 1105 Query: 240 L----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 + R +LLGIT+ASL T SF+S ASFQET RVL AA++G+ D L GLKENV Sbjct: 1106 AILSGSQPATGRPVLLGITKASLETDSFLSAASFQETTRVLTDAAIKGKRDELLGLKENV 1165 Query: 72 VLGGIIPVGTGFQKF 28 +LG ++P GTG ++ Sbjct: 1166 ILGKLVPAGTGIGRY 1180
>RPOC_VIBPA (Q87KQ5) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1400 Score = 122 bits (306), Expect = 7e-28 Identities = 67/132 (50%), Positives = 93/132 (70%), Gaps = 4/132 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 + N++Q+VYR QGV+I+++HIE I+RQ+ K ++ G S FLPGE + + + A R Sbjct: 1232 IANEVQEVYRLQGVKINDKHIETIVRQMLRKCTITHAGDSE-FLPGEQVEYSQVKIANRN 1290 Query: 240 LD----ESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 L+ E + LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV Sbjct: 1291 LEAEGKEPARFERELLGITKASLATESFISAASFQETTRVLTEAAVSGKRDDLRGLKENV 1350 Query: 72 VLGGIIPVGTGF 37 ++G +IP GTGF Sbjct: 1351 IVGRLIPAGTGF 1362
>RPOC_SALTY (P0A2R4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 122 bits (305), Expect = 9e-28 Identities = 66/132 (50%), Positives = 93/132 (70%), Gaps = 4/132 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 +VN++Q VYR QGV+I+++HIE+I+RQ+ K + G S+ FL GE + R + A R Sbjct: 1233 IVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIESAGSSD-FLEGEQVEYSRVKIANRE 1291 Query: 240 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 L+ + + LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV Sbjct: 1292 LEANGKVGATFSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENV 1351 Query: 72 VLGGIIPVGTGF 37 ++G +IP GTG+ Sbjct: 1352 IVGRLIPAGTGY 1363
>RPOC_SALTI (P0A2R5) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 122 bits (305), Expect = 9e-28 Identities = 66/132 (50%), Positives = 93/132 (70%), Gaps = 4/132 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 +VN++Q VYR QGV+I+++HIE+I+RQ+ K + G S+ FL GE + R + A R Sbjct: 1233 IVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIESAGSSD-FLEGEQVEYSRVKIANRE 1291 Query: 240 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 L+ + + LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV Sbjct: 1292 LEANGKVGATFSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENV 1351 Query: 72 VLGGIIPVGTGF 37 ++G +IP GTG+ Sbjct: 1352 IVGRLIPAGTGY 1363
>RPOC_SALPA (Q5PK92) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 122 bits (305), Expect = 9e-28 Identities = 66/132 (50%), Positives = 93/132 (70%), Gaps = 4/132 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 +VN++Q VYR QGV+I+++HIE+I+RQ+ K + G S+ FL GE + R + A R Sbjct: 1233 IVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIESAGSSD-FLEGEQVEYSRVKIANRE 1291 Query: 240 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 L+ + + LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV Sbjct: 1292 LEANGKVGATFSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENV 1351 Query: 72 VLGGIIPVGTGF 37 ++G +IP GTG+ Sbjct: 1352 IVGRLIPAGTGY 1363
>RPOC_SALCH (Q57H68) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 122 bits (305), Expect = 9e-28 Identities = 66/132 (50%), Positives = 93/132 (70%), Gaps = 4/132 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 +VN++Q VYR QGV+I+++HIE+I+RQ+ K + G S+ FL GE + R + A R Sbjct: 1233 IVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIESAGSSD-FLEGEQVEYSRVKIANRE 1291 Query: 240 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 L+ + + LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV Sbjct: 1292 LEANGKVGATFSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENV 1351 Query: 72 VLGGIIPVGTGF 37 ++G +IP GTG+ Sbjct: 1352 IVGRLIPAGTGY 1363
>RPOC_LISMF (Q724E9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1201 Score = 122 bits (305), Expect = 9e-28 Identities = 64/135 (47%), Positives = 93/135 (68%), Gaps = 4/135 (2%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 L+ ++QKVYR QGV+I ++H+E+++RQ+ K+RV + G +N+ LPG L+ + A R Sbjct: 1047 LLAEVQKVYRMQGVEIGDKHVEVMVRQMLRKIRVMDTGDTNI-LPGTLMDIHTFTEANRD 1105 Query: 240 L----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 + R +LLGIT+ASL T SF+S ASFQET RVL AA++G+ D L GLKENV Sbjct: 1106 AILSGSQPATGRPVLLGITKASLETDSFLSAASFQETTRVLTDAAIKGKRDELLGLKENV 1165 Query: 72 VLGGIIPVGTGFQKF 28 +LG ++P GTG ++ Sbjct: 1166 ILGKLVPAGTGIGRY 1180
>RPOC_LISIN (P77879) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1201 Score = 122 bits (305), Expect = 9e-28 Identities = 64/135 (47%), Positives = 93/135 (68%), Gaps = 4/135 (2%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 L+ ++QKVYR QGV+I ++H+E+++RQ+ K+RV + G +N+ LPG L+ + A R Sbjct: 1047 LLAEVQKVYRMQGVEIGDKHVEVMVRQMLRKIRVMDTGDTNI-LPGTLMDIHTFTEANRD 1105 Query: 240 L----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 + R +LLGIT+ASL T SF+S ASFQET RVL AA++G+ D L GLKENV Sbjct: 1106 AILSGSQPATGRPVLLGITKASLETDSFLSAASFQETTRVLTDAAIKGKRDELLGLKENV 1165 Query: 72 VLGGIIPVGTGFQKF 28 +LG ++P GTG ++ Sbjct: 1166 ILGKLVPAGTGIGRY 1180
>RPOC_STAAW (P60286) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1207 Score = 122 bits (305), Expect = 9e-28 Identities = 70/156 (44%), Positives = 103/156 (66%), Gaps = 7/156 (4%) Frame = -2 Query: 474 PWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNV 295 P +L A L +S L+ ++QKVYR QGV+I ++H+E+++RQ+ KVR+ E G + + Sbjct: 1035 PKNYLSVAGLNATESY--LLKEVQKVYRMQGVEIDDKHVEVMVRQMLRKVRIIEAGDTKL 1092 Query: 294 FLPGELIGLLRAERAGRALDESIYYRA-------ILLGITRASLNTQSFISEASFQETAR 136 LPG L+ + A R E+ +R +LLGIT+ASL T+SF+S ASFQET R Sbjct: 1093 -LPGSLVDIHNFTDANR---EAFKHRKRPATAKPVLLGITKASLETESFLSAASFQETTR 1148 Query: 135 VLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKF 28 VL AA++G+ D L GLKENV++G +IP GTG +++ Sbjct: 1149 VLTDAAIKGKRDDLLGLKENVIIGKLIPAGTGMRRY 1184
>RPOC_STAAS (Q6GBU4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1207 Score = 122 bits (305), Expect = 9e-28 Identities = 70/156 (44%), Positives = 103/156 (66%), Gaps = 7/156 (4%) Frame = -2 Query: 474 PWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNV 295 P +L A L +S L+ ++QKVYR QGV+I ++H+E+++RQ+ KVR+ E G + + Sbjct: 1035 PKNYLSVAGLNATESY--LLKEVQKVYRMQGVEIDDKHVEVMVRQMLRKVRIIEAGDTKL 1092 Query: 294 FLPGELIGLLRAERAGRALDESIYYRA-------ILLGITRASLNTQSFISEASFQETAR 136 LPG L+ + A R E+ +R +LLGIT+ASL T+SF+S ASFQET R Sbjct: 1093 -LPGSLVDIHNFTDANR---EAFKHRKRPATAKPVLLGITKASLETESFLSAASFQETTR 1148 Query: 135 VLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKF 28 VL AA++G+ D L GLKENV++G +IP GTG +++ Sbjct: 1149 VLTDAAIKGKRDDLLGLKENVIIGKLIPAGTGMRRY 1184
>RPOC_STAAR (Q6GJC5) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1207 Score = 122 bits (305), Expect = 9e-28 Identities = 70/156 (44%), Positives = 103/156 (66%), Gaps = 7/156 (4%) Frame = -2 Query: 474 PWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNV 295 P +L A L +S L+ ++QKVYR QGV+I ++H+E+++RQ+ KVR+ E G + + Sbjct: 1035 PKNYLSVAGLNATESY--LLKEVQKVYRMQGVEIDDKHVEVMVRQMLRKVRIIEAGDTKL 1092 Query: 294 FLPGELIGLLRAERAGRALDESIYYRA-------ILLGITRASLNTQSFISEASFQETAR 136 LPG L+ + A R E+ +R +LLGIT+ASL T+SF+S ASFQET R Sbjct: 1093 -LPGSLVDIHNFTDANR---EAFKHRKRPATAKPVLLGITKASLETESFLSAASFQETTR 1148 Query: 135 VLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKF 28 VL AA++G+ D L GLKENV++G +IP GTG +++ Sbjct: 1149 VLTDAAIKGKRDDLLGLKENVIIGKLIPAGTGMRRY 1184
>RPOC_STAAN (P60285) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1207 Score = 122 bits (305), Expect = 9e-28 Identities = 70/156 (44%), Positives = 103/156 (66%), Gaps = 7/156 (4%) Frame = -2 Query: 474 PWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNV 295 P +L A L +S L+ ++QKVYR QGV+I ++H+E+++RQ+ KVR+ E G + + Sbjct: 1035 PKNYLSVAGLNATESY--LLKEVQKVYRMQGVEIDDKHVEVMVRQMLRKVRIIEAGDTKL 1092 Query: 294 FLPGELIGLLRAERAGRALDESIYYRA-------ILLGITRASLNTQSFISEASFQETAR 136 LPG L+ + A R E+ +R +LLGIT+ASL T+SF+S ASFQET R Sbjct: 1093 -LPGSLVDIHNFTDANR---EAFKHRKRPATAKPVLLGITKASLETESFLSAASFQETTR 1148 Query: 135 VLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKF 28 VL AA++G+ D L GLKENV++G +IP GTG +++ Sbjct: 1149 VLTDAAIKGKRDDLLGLKENVIIGKLIPAGTGMRRY 1184
>RPOC_STAAM (P60284) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1207 Score = 122 bits (305), Expect = 9e-28 Identities = 70/156 (44%), Positives = 103/156 (66%), Gaps = 7/156 (4%) Frame = -2 Query: 474 PWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNV 295 P +L A L +S L+ ++QKVYR QGV+I ++H+E+++RQ+ KVR+ E G + + Sbjct: 1035 PKNYLSVAGLNATESY--LLKEVQKVYRMQGVEIDDKHVEVMVRQMLRKVRIIEAGDTKL 1092 Query: 294 FLPGELIGLLRAERAGRALDESIYYRA-------ILLGITRASLNTQSFISEASFQETAR 136 LPG L+ + A R E+ +R +LLGIT+ASL T+SF+S ASFQET R Sbjct: 1093 -LPGSLVDIHNFTDANR---EAFKHRKRPATAKPVLLGITKASLETESFLSAASFQETTR 1148 Query: 135 VLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKF 28 VL AA++G+ D L GLKENV++G +IP GTG +++ Sbjct: 1149 VLTDAAIKGKRDDLLGLKENVIIGKLIPAGTGMRRY 1184
>RPOC_STAAC (Q5HID2) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1207 Score = 122 bits (305), Expect = 9e-28 Identities = 70/156 (44%), Positives = 103/156 (66%), Gaps = 7/156 (4%) Frame = -2 Query: 474 PWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNV 295 P +L A L +S L+ ++QKVYR QGV+I ++H+E+++RQ+ KVR+ E G + + Sbjct: 1035 PKNYLSVAGLNATESY--LLKEVQKVYRMQGVEIDDKHVEVMVRQMLRKVRIIEAGDTKL 1092 Query: 294 FLPGELIGLLRAERAGRALDESIYYRA-------ILLGITRASLNTQSFISEASFQETAR 136 LPG L+ + A R E+ +R +LLGIT+ASL T+SF+S ASFQET R Sbjct: 1093 -LPGSLVDIHNFTDANR---EAFKHRKRPATAKPVLLGITKASLETESFLSAASFQETTR 1148 Query: 135 VLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKF 28 VL AA++G+ D L GLKENV++G +IP GTG +++ Sbjct: 1149 VLTDAAIKGKRDDLLGLKENVIIGKLIPAGTGMRRY 1184
>RPOC_STRMU (Q8DS47) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1209 Score = 122 bits (305), Expect = 9e-28 Identities = 67/140 (47%), Positives = 96/140 (68%), Gaps = 4/140 (2%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 L+ ++QKVYRSQGV+I ++H+E+++RQ+ KVRV + G + + LPG L+ + A R Sbjct: 1050 LLAEVQKVYRSQGVEIGDKHVEVMVRQMLRKVRVMDPGDTGL-LPGILMDIADFTDANRD 1108 Query: 240 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 + + R +L+GIT+ASL T SF+S ASFQET RVL AA+RG+ D L GLKENV Sbjct: 1109 IVIAGGIPATSRPVLMGITKASLETNSFLSAASFQETTRVLTDAAIRGKKDHLLGLKENV 1168 Query: 72 VLGGIIPVGTGFQKFVHRSP 13 ++G IIP GTG ++ + P Sbjct: 1169 IIGKIIPAGTGMARYRNLEP 1188
>RPOC_LACPL (Q88XZ2) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1213 Score = 121 bits (304), Expect = 1e-27 Identities = 69/142 (48%), Positives = 97/142 (68%), Gaps = 4/142 (2%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGL--LRAERAG 247 L+ ++QKVYR QGV+I ++H+EI+IRQ+ KVRV + G ++V LPG L+ + + E Sbjct: 1048 LLREVQKVYRMQGVEIGDKHVEIMIRQMLRKVRVMDPGDTDV-LPGTLMDIADFKDENYK 1106 Query: 246 RALDESI--YYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 + I R ++LGIT+A+L T SF+S ASFQET RVL AA+RG+ D L GLKENV Sbjct: 1107 TLIAGGIPATSRPVILGITKAALETNSFLSAASFQETTRVLTDAAIRGKNDPLIGLKENV 1166 Query: 72 VLGGIIPVGTGFQKFVHRSPQD 7 ++G IIP GTG + H P++ Sbjct: 1167 IIGKIIPAGTGMPVYRHIKPKE 1188
>RPOC_BACSK (Q5WLR9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1206 Score = 121 bits (304), Expect = 1e-27 Identities = 64/135 (47%), Positives = 94/135 (69%), Gaps = 4/135 (2%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 L+ ++QKVYR QGV+I ++H+E+++RQ+ KVRV + G + + LPG L+ + R A + Sbjct: 1045 LLREVQKVYRLQGVEIGDKHVEVMVRQMLRKVRVVDAGDTGI-LPGSLVEIQRFNEANKK 1103 Query: 240 LDESIYY----RAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 + S R +LLGIT+ASL T SF+S ASFQET RVL AA++G+ D L GLKENV Sbjct: 1104 VLLSNMRPATGRPVLLGITKASLETDSFLSAASFQETTRVLTDAAIKGKRDELLGLKENV 1163 Query: 72 VLGGIIPVGTGFQKF 28 ++G ++P GTG ++ Sbjct: 1164 IIGKLVPAGTGLARY 1178
>RPOC_PELCD (Q3A6Q3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1396 Score = 121 bits (304), Expect = 1e-27 Identities = 63/135 (46%), Positives = 95/135 (70%), Gaps = 4/135 (2%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 LV+++Q+VYR QGV+I+++HIE+I+RQ+ +VR+ E G + FL + + E R Sbjct: 1219 LVDEVQEVYRLQGVKINDKHIEVIVRQMLRRVRIKEPGNTR-FLADDQVERWEFECENRK 1277 Query: 240 L----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 + ++LGIT+ASL+T+SFIS ASFQET +VL +AA+ G+ID+L+GLKENV Sbjct: 1278 VVGEGGAPAVGEPLMLGITKASLSTESFISAASFQETTKVLTQAAIEGKIDYLRGLKENV 1337 Query: 72 VLGGIIPVGTGFQKF 28 ++G +IP GTG K+ Sbjct: 1338 IMGRLIPAGTGISKY 1352
>RPOC_GLUOX (Q5FTX8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1439 Score = 121 bits (304), Expect = 1e-27 Identities = 68/131 (51%), Positives = 88/131 (67%), Gaps = 4/131 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 LVN+IQ VYR QGV+I+++HIE+I+RQ+ KV + E G S +L GE + + E + Sbjct: 1279 LVNEIQDVYRLQGVKINDKHIEVIVRQMLQKVEILEPGDST-YLIGETVDRIEYEGENQR 1337 Query: 240 L----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 L D +L GIT+ASL TQSFIS ASFQET RVL AA G++D L GLKENV Sbjct: 1338 LMENGDTPAKAMPVLQGITKASLQTQSFISAASFQETTRVLTDAATSGKVDTLNGLKENV 1397 Query: 72 VLGGIIPVGTG 40 ++G +IP GTG Sbjct: 1398 IVGRLIPAGTG 1408
>RPOC_PSEF5 (Q4K527) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1399 Score = 121 bits (303), Expect = 2e-27 Identities = 67/131 (51%), Positives = 93/131 (70%), Gaps = 4/131 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRA----ER 253 +VN+IQ VYR QGV+I+++HIE I+RQ+ KV ++E G S+ F+ G+ + L ER Sbjct: 1233 IVNEIQDVYRLQGVKINDKHIETILRQMLRKVEIAESGDSS-FIKGDQMELTHVLVENER 1291 Query: 252 AGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 + +LLGIT+ASL+T+SFIS ASFQET RVL +AA+ G+ D+L+GLKENV Sbjct: 1292 LSTEDKFVAKFTRVLLGITKASLSTESFISAASFQETTRVLTEAAVTGKRDYLRGLKENV 1351 Query: 72 VLGGIIPVGTG 40 V+G +IP GTG Sbjct: 1352 VVGRLIPAGTG 1362
>RPOC_DESDG (Q30X04) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1386 Score = 121 bits (303), Expect = 2e-27 Identities = 69/138 (50%), Positives = 97/138 (70%), Gaps = 5/138 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGL--LRAERAG 247 LV +IQ VYR QGV I ++HIE+I+RQ+ KV V + G ++ FL GE + R E Sbjct: 1222 LVEEIQDVYRFQGVGIDDKHIEVIVRQMLKKVTVLDPGQTS-FLVGEQVDKAEFRIENQ- 1279 Query: 246 RALDES---IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKEN 76 +A++E ++LGIT+ASL T SFIS ASFQET +VL +A+LRG+ D L+GLKEN Sbjct: 1280 KAIEEGRTPATAEPLVLGITQASLTTSSFISAASFQETTKVLTEASLRGKNDHLRGLKEN 1339 Query: 75 VVLGGIIPVGTGFQKFVH 22 V++G +IP GTG++++VH Sbjct: 1340 VIVGRLIPAGTGYREYVH 1357
>RPOC_PSEHT (Q3ILP8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1390 Score = 121 bits (303), Expect = 2e-27 Identities = 69/143 (48%), Positives = 94/143 (65%), Gaps = 4/143 (2%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 +VN++Q+VYR QGV+I+++HIE IIRQ+ K + G ++ FL GE I + R A R Sbjct: 1218 IVNEVQEVYRLQGVKINDKHIETIIRQMLRKCTIMHGGDTD-FLAGEQIEVARVNIANRD 1276 Query: 240 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 L+ + L+GIT+ASL T+SFIS ASFQET RVL AA+ G+ D L+GLKENV Sbjct: 1277 LEAQGKIPAKFEIQLMGITKASLATESFISAASFQETTRVLTDAAVNGKSDELRGLKENV 1336 Query: 72 VLGGIIPVGTGFQKFVHRSPQDK 4 ++G +IP GTGF R + K Sbjct: 1337 IVGRLIPAGTGFSYHQERMARRK 1359
>RPOC_HAEDU (Q7VKL8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1420 Score = 121 bits (303), Expect = 2e-27 Identities = 65/132 (49%), Positives = 94/132 (71%), Gaps = 4/132 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 +VN++Q+VYR QGV+I+++HIE+I+RQ+ K ++ + + FL GE + + R + A R Sbjct: 1233 IVNEVQEVYRLQGVKINDKHIEVIVRQMLRKAVIT-NAYDSEFLEGEQVEVARVKIANRK 1291 Query: 240 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 E + + LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV Sbjct: 1292 RAEEGKPLVEFERELLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENV 1351 Query: 72 VLGGIIPVGTGF 37 ++G +IP GTGF Sbjct: 1352 IVGRLIPAGTGF 1363
>RPOC_BUCAP (P41185) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1413 Score = 121 bits (303), Expect = 2e-27 Identities = 67/132 (50%), Positives = 94/132 (71%), Gaps = 4/132 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 +VN++Q+VYR QGV+I+++HIE+IIRQ+ K V + G S FL GE + R + + R Sbjct: 1233 IVNEVQEVYRLQGVKINDKHIEVIIRQMLRKATVIKSGNSE-FLDGEQVEFSRIKISNRI 1291 Query: 240 LDESIYYRAI----LLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 L++ A LLGIT+ASL T+SFIS ASFQET RVL ++A+ G+ D L+GLKENV Sbjct: 1292 LNKQSKIPATFSRDLLGITKASLATESFISAASFQETTRVLTESAVAGKKDELRGLKENV 1351 Query: 72 VLGGIIPVGTGF 37 ++G +IP GTG+ Sbjct: 1352 IVGRLIPAGTGY 1363
>RPOC_STAES (Q8CQ83) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1207 Score = 121 bits (303), Expect = 2e-27 Identities = 68/153 (44%), Positives = 100/153 (65%), Gaps = 4/153 (2%) Frame = -2 Query: 474 PWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNV 295 P +L A L +S L+ ++QKVYR QGV+I ++H+E+++RQ+ KVR+ E G + + Sbjct: 1035 PKNYLSVAGLNATESY--LLKEVQKVYRMQGVEIDDKHVEVMVRQMLRKVRIIEAGDTKL 1092 Query: 294 FLPGELIGLLRAERAGRAL----DESIYYRAILLGITRASLNTQSFISEASFQETARVLA 127 LPG L+ + A R + +LLGIT+ASL T+SF+S ASFQET RVL Sbjct: 1093 -LPGSLVDIHNFTDANRDAFKHRKRPATAKPVLLGITKASLETESFLSAASFQETTRVLT 1151 Query: 126 KAALRGRIDWLKGLKENVVLGGIIPVGTGFQKF 28 AA++G+ D L GLKENV++G +IP GTG +++ Sbjct: 1152 DAAIKGKRDDLLGLKENVIIGKLIPAGTGMRRY 1184
>RPOC_STAEQ (Q5HRK9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1207 Score = 121 bits (303), Expect = 2e-27 Identities = 68/153 (44%), Positives = 100/153 (65%), Gaps = 4/153 (2%) Frame = -2 Query: 474 PWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNV 295 P +L A L +S L+ ++QKVYR QGV+I ++H+E+++RQ+ KVR+ E G + + Sbjct: 1035 PKNYLSVAGLNATESY--LLKEVQKVYRMQGVEIDDKHVEVMVRQMLRKVRIIEAGDTKL 1092 Query: 294 FLPGELIGLLRAERAGRAL----DESIYYRAILLGITRASLNTQSFISEASFQETARVLA 127 LPG L+ + A R + +LLGIT+ASL T+SF+S ASFQET RVL Sbjct: 1093 -LPGSLVDIHNFTDANRDAFKHRKRPATAKPVLLGITKASLETESFLSAASFQETTRVLT 1151 Query: 126 KAALRGRIDWLKGLKENVVLGGIIPVGTGFQKF 28 AA++G+ D L GLKENV++G +IP GTG +++ Sbjct: 1152 DAAIKGKRDDLLGLKENVIIGKLIPAGTGMRRY 1184
>RPOC_STRCO (Q8CJT1) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1299 Score = 121 bits (303), Expect = 2e-27 Identities = 66/138 (47%), Positives = 94/138 (68%), Gaps = 4/138 (2%) Frame = -2 Query: 429 RISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 250 ++ LV ++QKVY SQGV IH++HIEIIIRQ+ +V + E G + + LPGEL+ + E Sbjct: 1114 QVHLVGEVQKVYNSQGVSIHDKHIEIIIRQMLRRVTIIESGDAEL-LPGELVERTKFETE 1172 Query: 249 GRALDESIYY----RAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLK 82 R + + + R L+GIT+ASL T+S++S ASFQET RVL AA+ + D L GLK Sbjct: 1173 NRRVVQEGGHPASGRPQLMGITKASLATESWLSAASFQETTRVLTDAAINAKSDSLIGLK 1232 Query: 81 ENVVLGGIIPVGTGFQKF 28 ENV++G +IP GTG ++ Sbjct: 1233 ENVIIGKLIPAGTGLSRY 1250
>RPOC_CLOAB (Q97EH0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1182 Score = 121 bits (303), Expect = 2e-27 Identities = 63/135 (46%), Positives = 94/135 (69%), Gaps = 4/135 (2%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 L++++QKVYR QGV I+++H+E++IRQ+T KV+V + G + + LPG +I + + Sbjct: 1022 LLSEVQKVYRLQGVDINDKHLEVVIRQMTRKVKVEDSGDTEL-LPGTMIDIFDFRDENKK 1080 Query: 240 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 ++E+ R LLGIT+A+L T SF+S ASFQET RVL AA++G+ D L GLKENV Sbjct: 1081 VEENGGRPAQARVSLLGITKAALATDSFLSAASFQETTRVLTDAAIKGKSDPLVGLKENV 1140 Query: 72 VLGGIIPVGTGFQKF 28 +G +IP GTG ++ Sbjct: 1141 TIGKLIPAGTGMNRY 1155
>RPOC_SHEVI (Q9KW13) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1409 Score = 120 bits (302), Expect = 2e-27 Identities = 67/132 (50%), Positives = 94/132 (71%), Gaps = 4/132 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 +VN++Q VYR QGV+I+++HIE+IIRQ+ K +++ G S FL GE + R + A R Sbjct: 1234 IVNEVQDVYRLQGVKINDKHIEVIIRQMLRKCLITDAGDSQ-FLAGEQAEVARVKIANRE 1292 Query: 240 LD----ESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 L+ + + LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV Sbjct: 1293 LEAQGKKPATFDRELLGITKASLATESFISAASFQETTRVLTEAAVGGKSDKLRGLKENV 1352 Query: 72 VLGGIIPVGTGF 37 ++G +IP GTG+ Sbjct: 1353 IVGRLIPAGTGY 1364
>RPOC_VIBCH (Q9KV29) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1401 Score = 120 bits (302), Expect = 2e-27 Identities = 67/132 (50%), Positives = 92/132 (69%), Gaps = 4/132 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 + N++Q+VYR QGV+I+++HIE I+RQ+ K ++ G S FLPGE + + + A R Sbjct: 1232 IANEVQEVYRLQGVKINDKHIETIVRQMLRKCTITFAGDSE-FLPGETVEYSQVKIANRK 1290 Query: 240 L----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 L E + LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV Sbjct: 1291 LVEEGKEPARFERELLGITKASLATESFISAASFQETTRVLTEAAVSGKRDDLRGLKENV 1350 Query: 72 VLGGIIPVGTGF 37 ++G +IP GTGF Sbjct: 1351 IVGRLIPAGTGF 1362
>RPOC_BLOPB (Q492C0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1416 Score = 120 bits (302), Expect = 2e-27 Identities = 69/140 (49%), Positives = 97/140 (69%), Gaps = 7/140 (5%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 +VN++Q VYR QGV+I+++HIE+I+RQ+ K V G S+ FL GE + R + A R Sbjct: 1237 IVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATVIRSGSSD-FLVGEQVEYSRIKIANRK 1295 Query: 240 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 L+ I + LLGIT+ASL T+SFIS ASFQET RVL ++++ G+ D L+GLKENV Sbjct: 1296 LENEGKVKISFIRNLLGITKASLATESFISAASFQETTRVLTESSVAGKRDELRGLKENV 1355 Query: 72 VLGGIIPVGTGF---QKFVH 22 ++G +IP GTG+ Q+ VH Sbjct: 1356 IVGRLIPAGTGYSYHQERVH 1375
>RPOC_PSEU2 (Q4ZMN8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1399 Score = 120 bits (302), Expect = 2e-27 Identities = 67/131 (51%), Positives = 93/131 (70%), Gaps = 4/131 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRA----ER 253 +VN+IQ VYR QGV+I+++HIE I+RQ+ KV ++E G S+ F+ G+ + L ER Sbjct: 1233 IVNEIQDVYRLQGVKINDKHIETILRQMLRKVEIAESGDSS-FIKGDQMELTHVLVENER 1291 Query: 252 AGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 + +LLGIT+ASL+T+SFIS ASFQET RVL +AA+ G+ D+L+GLKENV Sbjct: 1292 LSTEDKFVSKFTRVLLGITKASLSTESFISAASFQETTRVLTEAAVTGKRDYLRGLKENV 1351 Query: 72 VLGGIIPVGTG 40 V+G +IP GTG Sbjct: 1352 VVGRLIPAGTG 1362
>RPOC_PSE14 (Q48D30) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1399 Score = 120 bits (302), Expect = 2e-27 Identities = 67/131 (51%), Positives = 93/131 (70%), Gaps = 4/131 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRA----ER 253 +VN+IQ VYR QGV+I+++HIE I+RQ+ KV ++E G S+ F+ G+ + L ER Sbjct: 1233 IVNEIQDVYRLQGVKINDKHIETILRQMLRKVEIAESGDSS-FIKGDQMELTHVLVENER 1291 Query: 252 AGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 + +LLGIT+ASL+T+SFIS ASFQET RVL +AA+ G+ D+L+GLKENV Sbjct: 1292 LSTEDKFVSKFTRVLLGITKASLSTESFISAASFQETTRVLTEAAVTGKRDYLRGLKENV 1351 Query: 72 VLGGIIPVGTG 40 V+G +IP GTG Sbjct: 1352 VVGRLIPAGTG 1362
>RPOC_SHEON (Q8EK73) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1405 Score = 120 bits (302), Expect = 2e-27 Identities = 68/132 (51%), Positives = 93/132 (70%), Gaps = 4/132 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 +VN++Q VYR QGV+I+++HIE+IIRQ+ K ++ G S FL GE + + R + A R Sbjct: 1233 IVNEVQDVYRLQGVKINDKHIEVIIRQMLRKCVITAAGDSE-FLEGEQVEVSRVKIANRE 1291 Query: 240 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 L E + LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV Sbjct: 1292 LVEQGKVPATFERELLGITKASLATESFISAASFQETTRVLTEAAVGGKSDNLRGLKENV 1351 Query: 72 VLGGIIPVGTGF 37 ++G +IP GTG+ Sbjct: 1352 IVGRLIPAGTGY 1363
>RPOC_STAS1 (Q49V53) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1207 Score = 120 bits (302), Expect = 2e-27 Identities = 63/135 (46%), Positives = 94/135 (69%), Gaps = 4/135 (2%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 L+ ++QKVYR QGV+I ++H+E+++RQ+ KVR+ E G + + LPG L+ + A R Sbjct: 1051 LLKEVQKVYRMQGVEIDDKHVEVMVRQMLRKVRIIEAGDTKL-LPGSLVDIHNFTDANRE 1109 Query: 240 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 + + +LLGIT+ASL T+SF+S ASFQET RVL AA++G+ D L GLKENV Sbjct: 1110 AFKERKRPATAKPVLLGITKASLETESFLSAASFQETTRVLTDAAIKGKRDNLLGLKENV 1169 Query: 72 VLGGIIPVGTGFQKF 28 ++G +IP GTG +++ Sbjct: 1170 IIGKLIPAGTGMRRY 1184
>RPOC_GEOKA (Q5L404) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1199 Score = 120 bits (302), Expect = 2e-27 Identities = 68/143 (47%), Positives = 98/143 (68%), Gaps = 4/143 (2%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLR-AERAGR 244 L+ ++QKVYR QGV+I ++HIE+++RQ+ KVRV + G ++V LPG L+ + + + + Sbjct: 1047 LLREVQKVYRMQGVEISDKHIEVMVRQMLRKVRVIDAGDTDV-LPGTLLDVHQFTDVNAK 1105 Query: 243 ALDES---IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 AL E R +LLGIT+ASL T SF+S ASFQET RVL AA++G+ D L GLKENV Sbjct: 1106 ALREGKRPATARQVLLGITKASLETDSFLSAASFQETTRVLTDAAIKGKRDELLGLKENV 1165 Query: 72 VLGGIIPVGTGFQKFVHRSPQDK 4 ++G ++P GTG ++ P K Sbjct: 1166 IIGKLVPAGTGMARYRKVKPAVK 1188
>RPOC_OCEIH (Q8ETY7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1203 Score = 120 bits (302), Expect = 2e-27 Identities = 63/135 (46%), Positives = 93/135 (68%), Gaps = 4/135 (2%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 L+ ++Q+VYR QGV+I ++H+E+++RQ+ K+RV G + V LPG L+ L + + A Sbjct: 1046 LLKEVQRVYRMQGVEIGDKHVEVMVRQMLRKIRVVSSGDTEV-LPGSLLELHQFKEANHK 1104 Query: 240 L----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 + E R +LLGIT+ASL T SF+S ASFQET RVL AA++G+ D L GLKENV Sbjct: 1105 VLMEEGEPATGRPVLLGITKASLETDSFLSAASFQETTRVLTDAAIKGKRDELLGLKENV 1164 Query: 72 VLGGIIPVGTGFQKF 28 ++G ++P GTG ++ Sbjct: 1165 IIGKLVPAGTGMPQY 1179
>RPOC_STRAW (Q82DQ4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1299 Score = 120 bits (302), Expect = 2e-27 Identities = 66/138 (47%), Positives = 94/138 (68%), Gaps = 4/138 (2%) Frame = -2 Query: 429 RISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 250 ++ LV ++QKVY SQGV IH++HIEIIIRQ+ +V + E G + + LPGEL+ + E Sbjct: 1114 QVHLVGEVQKVYNSQGVSIHDKHIEIIIRQMLRRVTIIESGDAEL-LPGELVERSKFETE 1172 Query: 249 GRALDESIYY----RAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLK 82 R + + + R L+GIT+ASL T+S++S ASFQET RVL AA+ + D L GLK Sbjct: 1173 NRRVVQEGGHPASGRPQLMGITKASLATESWLSAASFQETTRVLTDAAINAKSDSLIGLK 1232 Query: 81 ENVVLGGIIPVGTGFQKF 28 ENV++G +IP GTG ++ Sbjct: 1233 ENVIIGKLIPAGTGLSRY 1250
>RPOC_ACIAD (Q6FF89) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1397 Score = 120 bits (302), Expect = 2e-27 Identities = 67/142 (47%), Positives = 97/142 (68%), Gaps = 4/142 (2%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 +VN++Q VYR QGV+I+++HIE+I+RQ+ KV ++ DG F+ GE + +R + +A Sbjct: 1229 IVNEVQDVYRLQGVKINDKHIEVIVRQMLRKVDIT-DGGDTSFIKGEQVDYIRVVQENQA 1287 Query: 240 LDESIYYRAI----LLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 + + A L+GIT+ASL+T SFIS ASFQET RVL +AA+ G+ D L+GLKENV Sbjct: 1288 VLAQNKFPAKFERQLMGITKASLSTDSFISAASFQETTRVLTEAAVTGKEDDLRGLKENV 1347 Query: 72 VLGGIIPVGTGFQKFVHRSPQD 7 V+G +IP GTG + R Q+ Sbjct: 1348 VVGRLIPAGTGLAYHLERRRQE 1369
>RPOC_PSYAR (Q4FQH4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1406 Score = 120 bits (301), Expect = 3e-27 Identities = 67/143 (46%), Positives = 97/143 (67%), Gaps = 4/143 (2%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 +VN++Q VYR QGV+I+++HIE+IIRQ+ KV +++ G SN F G+ + + Sbjct: 1226 IVNEVQDVYRLQGVKINDKHIEVIIRQMLRKVEITDGGDSNHF-KGDQVEYADIKALNAK 1284 Query: 240 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 L+ + + LLGIT+ASL T+SFIS ASFQET RVL AA+ G++D L+GLKENV Sbjct: 1285 LEAEDKFPVQFERQLLGITKASLATESFISAASFQETTRVLTAAAVTGKVDELRGLKENV 1344 Query: 72 VLGGIIPVGTGFQKFVHRSPQDK 4 V+G +IP GTG H++ ++K Sbjct: 1345 VVGRLIPAGTGLA--YHKARKEK 1365
>RPOC_CORGL (Q8NT25) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1333 Score = 120 bits (300), Expect = 3e-27 Identities = 67/135 (49%), Positives = 92/135 (68%), Gaps = 4/135 (2%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGR- 244 L++++Q VYR+QGV IH++HIEIIIRQ+ + V E G S FLPG L+ L A+ A Sbjct: 1155 LIDEVQAVYRAQGVAIHDKHIEIIIRQMLRRGTVIESG-STEFLPGSLVDLSEAKLANSE 1213 Query: 243 ---ALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 A + R+ ++GIT+ASL T+S++S ASFQET RVL AA+ R D L GLKENV Sbjct: 1214 AIGAGGQPAELRSEIMGITKASLATESWLSAASFQETTRVLTDAAINKRSDKLIGLKENV 1273 Query: 72 VLGGIIPVGTGFQKF 28 ++G +IP GTG ++ Sbjct: 1274 IIGKLIPAGTGISRY 1288
>RPOC_DEIRA (Q9RVW0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1546 Score = 120 bits (300), Expect = 3e-27 Identities = 62/130 (47%), Positives = 92/130 (70%), Gaps = 3/130 (2%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 LV ++Q+VYRSQGV++H++HIE+I+RQ+ V V+ DG L G+ + ++A A Sbjct: 1369 LVEEVQRVYRSQGVKVHDKHIEVIVRQMLRWVEVT-DGGDTTLLEGQTVEHWEVDQANEA 1427 Query: 240 LDES---IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVV 70 L E ++ +LLGIT++SL T+S++S ASFQ T VL +A++RG++D L GLKENV+ Sbjct: 1428 LAEGQTPASWKPVLLGITKSSLTTKSWLSAASFQHTTHVLTEASMRGQVDDLIGLKENVI 1487 Query: 69 LGGIIPVGTG 40 LG +IP GTG Sbjct: 1488 LGKLIPAGTG 1497
>RPOC_LEIXX (Q6ACX6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1291 Score = 120 bits (300), Expect = 3e-27 Identities = 68/135 (50%), Positives = 94/135 (69%), Gaps = 4/135 (2%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGR- 244 LV +Q VYRSQGV IH++HIE+I+RQ+ KV V + G +++ LPGEL+ R R Sbjct: 1107 LVGGVQGVYRSQGVPIHDKHIEVIVRQMLRKVTVVDHGDTDL-LPGELVDRSRYNEINRG 1165 Query: 243 ALDE---SIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 AL E + R ++GIT+ASL T+S++S ASFQET RVL +AA+ G+ D L GLKENV Sbjct: 1166 ALQEGKKTASARQEVMGITKASLATESWLSAASFQETTRVLTQAAMEGKSDPLIGLKENV 1225 Query: 72 VLGGIIPVGTGFQKF 28 ++G +IP GTG ++ Sbjct: 1226 IIGKLIPAGTGLSRY 1240
>RPOC_AGRT5 (Q8UE09) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1402 Score = 120 bits (300), Expect = 3e-27 Identities = 63/130 (48%), Positives = 90/130 (69%), Gaps = 3/130 (2%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 LVN+IQ+VYR QGV I+++HIE+I+RQ+ KV +++ G S + + + + R Sbjct: 1228 LVNEIQEVYRLQGVVINDKHIEVIVRQMLQKVEITDAGDSQYIVGDNVDRIEMEDMNDRL 1287 Query: 240 LDES---IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVV 70 ++E Y +LLGIT+ASL T SFIS ASFQET +VL +AA+ G+ D L+GLKENV+ Sbjct: 1288 IEEGKKPAYGEPVLLGITKASLQTPSFISAASFQETTKVLTEAAIAGKTDTLQGLKENVI 1347 Query: 69 LGGIIPVGTG 40 +G +IP GTG Sbjct: 1348 VGRLIPAGTG 1357
>RPOC_NEIG1 (Q5F5R6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1391 Score = 119 bits (299), Expect = 4e-27 Identities = 68/139 (48%), Positives = 95/139 (68%), Gaps = 4/139 (2%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIG----LLRAER 253 +V ++Q+VYR QGV+I ++HIE+IIRQ+ +V +++ G + F+ GE + + E+ Sbjct: 1236 IVQEVQEVYRLQGVKISDKHIEVIIRQMLRRVNIADAGETG-FITGEQVERGDVMAANEK 1294 Query: 252 AGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 A E Y ILLGIT+ASL+T SFIS ASFQET RVL +AA+ G+ D L+GLKENV Sbjct: 1295 ALEEGKEPARYENILLGITKASLSTDSFISAASFQETTRVLTEAAIMGKQDELRGLKENV 1354 Query: 72 VLGGIIPVGTGFQKFVHRS 16 ++G +IP GTG HRS Sbjct: 1355 IVGRLIPAGTGLT--YHRS 1371
>RPOC_STRR6 (Q8DNF1) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1225 Score = 119 bits (299), Expect = 4e-27 Identities = 67/144 (46%), Positives = 96/144 (66%), Gaps = 4/144 (2%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGR- 244 L+ ++QKVYRSQGV+I ++HIE+++RQ+ KVRV + G +++ + G L+ + A + Sbjct: 1049 LLGEVQKVYRSQGVEIGDKHIEVMVRQMIRKVRVMDPGDTDLLM-GTLMDINDFTDANKD 1107 Query: 243 ---ALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 A R +L+GIT+ASL T SF+S ASFQET RVL AA+RG+ D L GLKENV Sbjct: 1108 VLIAGGVPATGRPVLMGITKASLETNSFLSAASFQETTRVLTDAAIRGKKDHLLGLKENV 1167 Query: 72 VLGGIIPVGTGFQKFVHRSPQDKN 1 ++G IIP GTG ++ + P N Sbjct: 1168 IIGKIIPAGTGMARYRNLEPHAVN 1191
>RPOC_STRPN (Q97NQ8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1225 Score = 119 bits (299), Expect = 4e-27 Identities = 67/144 (46%), Positives = 96/144 (66%), Gaps = 4/144 (2%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGR- 244 L+ ++QKVYRSQGV+I ++HIE+++RQ+ KVRV + G +++ + G L+ + A + Sbjct: 1049 LLGEVQKVYRSQGVEIGDKHIEVMVRQMIRKVRVMDPGDTDLLM-GTLMDINDFTDANKD 1107 Query: 243 ---ALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 A R +L+GIT+ASL T SF+S ASFQET RVL AA+RG+ D L GLKENV Sbjct: 1108 VLIAGGVPATGRPVLMGITKASLETNSFLSAASFQETTRVLTDAAIRGKKDHLLGLKENV 1167 Query: 72 VLGGIIPVGTGFQKFVHRSPQDKN 1 ++G IIP GTG ++ + P N Sbjct: 1168 IIGKIIPAGTGMARYRNLEPHAVN 1191
>RPOC_BACSU (P37871) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1199 Score = 119 bits (299), Expect = 4e-27 Identities = 63/135 (46%), Positives = 95/135 (70%), Gaps = 4/135 (2%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 L++++QKVYR QGV+I ++H+E+++RQ+ KVRV + G ++V LPG L+ + + A + Sbjct: 1047 LLHEVQKVYRMQGVEIGDKHVEVMVRQMLRKVRVIDAGDTDV-LPGTLLDIHQFTEANKK 1105 Query: 240 L----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 + + R +LLGIT+ASL T SF+S ASFQET RVL AA++G+ D L GLKENV Sbjct: 1106 VLLEGNRPATGRPVLLGITKASLETDSFLSAASFQETTRVLTDAAIKGKRDELLGLKENV 1165 Query: 72 VLGGIIPVGTGFQKF 28 ++G ++P GT K+ Sbjct: 1166 IIGKLVPGGTAMMKY 1180
>RPOC_CORDI (Q6NJF6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1336 Score = 119 bits (299), Expect = 4e-27 Identities = 67/135 (49%), Positives = 91/135 (67%), Gaps = 4/135 (2%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 LV+++Q VYR+QGV IH++HIEIIIRQ+ + V E G S FLPG L+ L A+ A Sbjct: 1156 LVDEVQDVYRAQGVAIHDKHIEIIIRQMLRRGTVIESG-STEFLPGTLVDLSEAKAANAE 1214 Query: 240 L----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 + R+ ++GIT+ASL T+S++S ASFQET RVL AA+ R D L GLKENV Sbjct: 1215 ALANGGQPAELRSEIMGITKASLATESWLSAASFQETTRVLTDAAINKRSDKLIGLKENV 1274 Query: 72 VLGGIIPVGTGFQKF 28 ++G +IP GTG ++ Sbjct: 1275 IIGKLIPAGTGISRY 1289
>RPOC_PARUW (Q6MDM0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1388 Score = 119 bits (299), Expect = 4e-27 Identities = 66/134 (49%), Positives = 94/134 (70%), Gaps = 4/134 (2%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 LVN++Q+VYR QGV I+++HIEII+RQ+ KVRV + G +++ L GE + E + Sbjct: 1234 LVNQVQEVYRLQGVDINDKHIEIIVRQMLKKVRVIDPGDTSL-LYGEEVDKKEFEVENQK 1292 Query: 240 LDE----SIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 + + + +LLGIT+ASL+T+SFIS ASFQ+T RVL +AA G+ D+L G KENV Sbjct: 1293 VSQEGGKAAQATPVLLGITKASLSTESFISAASFQDTTRVLTEAACAGKTDYLVGFKENV 1352 Query: 72 VLGGIIPVGTGFQK 31 ++G IIP GTGF + Sbjct: 1353 IMGHIIPGGTGFDR 1366
>RPOC_NEIMB (Q9K1J1) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1391 Score = 119 bits (298), Expect = 6e-27 Identities = 67/139 (48%), Positives = 95/139 (68%), Gaps = 4/139 (2%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIG----LLRAER 253 +V ++Q+VYR QGV+I ++HIE+IIRQ+ +V +++ G + F+ GE + + E+ Sbjct: 1236 IVQEVQEVYRLQGVKISDKHIEVIIRQMLRRVNIADAGETG-FITGEQVERGDVMAANEK 1294 Query: 252 AGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 A E Y +LLGIT+ASL+T SFIS ASFQET RVL +AA+ G+ D L+GLKENV Sbjct: 1295 ALEEGKEPARYENVLLGITKASLSTDSFISAASFQETTRVLTEAAIMGKQDELRGLKENV 1354 Query: 72 VLGGIIPVGTGFQKFVHRS 16 ++G +IP GTG HRS Sbjct: 1355 IVGRLIPAGTGLT--YHRS 1371
>RPOC_NEIMA (Q9JX03) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1391 Score = 119 bits (298), Expect = 6e-27 Identities = 67/139 (48%), Positives = 95/139 (68%), Gaps = 4/139 (2%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIG----LLRAER 253 +V ++Q+VYR QGV+I ++HIE+IIRQ+ +V +++ G + F+ GE + + E+ Sbjct: 1236 IVQEVQEVYRLQGVKISDKHIEVIIRQMLRRVNIADAGETG-FITGEQVERGDVMAANEK 1294 Query: 252 AGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 A E Y +LLGIT+ASL+T SFIS ASFQET RVL +AA+ G+ D L+GLKENV Sbjct: 1295 ALEEGKEPARYENVLLGITKASLSTDSFISAASFQETTRVLTEAAIMGKQDELRGLKENV 1354 Query: 72 VLGGIIPVGTGFQKFVHRS 16 ++G +IP GTG HRS Sbjct: 1355 IVGRLIPAGTGLT--YHRS 1371
>RPOC_COREF (Q8FS96) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1333 Score = 119 bits (298), Expect = 6e-27 Identities = 66/135 (48%), Positives = 91/135 (67%), Gaps = 4/135 (2%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 L++++Q VYR+QGV IH++HIEIIIRQ+ + V E G S FLPG L+ L A+ A Sbjct: 1155 LIDEVQAVYRAQGVAIHDKHIEIIIRQMLRRGTVIESG-STEFLPGSLVDLSEAKLANSE 1213 Query: 240 L----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 + R+ ++GIT+ASL T+S++S ASFQET RVL AA+ R D L GLKENV Sbjct: 1214 AIANGGQPAELRSEIMGITKASLATESWLSAASFQETTRVLTDAAINKRSDKLIGLKENV 1273 Query: 72 VLGGIIPVGTGFQKF 28 ++G +IP GTG ++ Sbjct: 1274 IIGKLIPAGTGISRY 1288
>RPOC_WIGBR (Q8D232) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1405 Score = 119 bits (298), Expect = 6e-27 Identities = 65/130 (50%), Positives = 90/130 (69%), Gaps = 2/130 (1%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 +VN++Q VYR QGV+I+++HIE+I+RQ+ K + +G + FL GE R A Sbjct: 1233 IVNEVQDVYRLQGVKINDKHIEVIVRQMLKKATIL-NGSQSEFLEGEQTEFSRIRIANNN 1291 Query: 240 LDES--IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVL 67 S I Y LLGIT++SL T+SFIS ASFQET RVL ++A+ G+ID L+GLKENV++ Sbjct: 1292 TKSSDKINYSRDLLGITKSSLATESFISAASFQETTRVLTESAVSGKIDELRGLKENVIV 1351 Query: 66 GGIIPVGTGF 37 G +IP GTG+ Sbjct: 1352 GRLIPAGTGY 1361
>RPOC_BACLD (Q65PB4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1199 Score = 119 bits (298), Expect = 6e-27 Identities = 63/135 (46%), Positives = 93/135 (68%), Gaps = 4/135 (2%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 L++++QKVYR QGV+I ++H+E+++RQ+ KVRV + G + V LPG L+ + + A + Sbjct: 1047 LLHEVQKVYRMQGVEIGDKHVEVMVRQMLRKVRVIDAGDTEV-LPGTLLDIHQFTEANKK 1105 Query: 240 L----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 + R +LLGIT+ASL T SF+S ASFQET RVL AA++G+ D L GLKENV Sbjct: 1106 VLLEGKRPATGRPVLLGITKASLETDSFLSAASFQETTRVLTDAAIKGKRDELLGLKENV 1165 Query: 72 VLGGIIPVGTGFQKF 28 ++G ++P GTG + Sbjct: 1166 IIGKLVPAGTGMLNY 1180
>RPOC_PASMU (Q9CK92) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1417 Score = 119 bits (297), Expect = 8e-27 Identities = 67/143 (46%), Positives = 98/143 (68%), Gaps = 4/143 (2%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 +VN++Q+VYR QGV+I+++HIE+I+RQ+ K V++ + FL GE + + R + R Sbjct: 1233 IVNEVQEVYRLQGVKINDKHIEVIVRQMLRKGIVTK-AYDSEFLEGEQVEVARVKIVNRK 1291 Query: 240 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 + + + LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV Sbjct: 1292 REAEGKPLVEFERELLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENV 1351 Query: 72 VLGGIIPVGTGFQKFVHRSPQDK 4 ++G +IP GTGF H++ Q K Sbjct: 1352 IVGRLIPAGTGFA--YHQNRQKK 1372
>RPOC_NITWN (Q3SSX9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1399 Score = 119 bits (297), Expect = 8e-27 Identities = 65/131 (49%), Positives = 92/131 (70%), Gaps = 4/131 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 LVN+IQ+VYR QGV I+++HIE+I+RQ+ KV + + G +++ + GE I + +R Sbjct: 1227 LVNEIQEVYRLQGVLINDKHIEVIVRQMLQKVEIIDQGETDM-ISGEQIDKIEFDRLNLK 1285 Query: 240 LDESIYYRA----ILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 E A +LLGIT+ASL T+SF S ASFQET RVL +AA+ G++D L+GLKENV Sbjct: 1286 AQEEGKKIATGTPVLLGITKASLQTRSFFSAASFQETTRVLTEAAVNGKVDPLEGLKENV 1345 Query: 72 VLGGIIPVGTG 40 ++G +IP GTG Sbjct: 1346 IVGRLIPAGTG 1356
>RPOC_XANCP (Q8PC55) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1405 Score = 119 bits (297), Expect = 8e-27 Identities = 69/131 (52%), Positives = 91/131 (69%), Gaps = 4/131 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRA-ERAGR 244 LV +IQ VYR QGV+I+++HIE+I RQ+ KV +++ G S FL GE + R E R Sbjct: 1234 LVKEIQDVYRLQGVKINDKHIEVITRQMLRKVEITDQGNSK-FLNGEQVERQRVIEENAR 1292 Query: 243 ALDES---IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 + + Y +LLGIT+ASL T+SFIS ASFQET RVL +AA+RG D L+GLKENV Sbjct: 1293 LVTRNELPAKYDPVLLGITKASLATESFISAASFQETTRVLTEAAVRGTRDNLRGLKENV 1352 Query: 72 VLGGIIPVGTG 40 ++G +IP GTG Sbjct: 1353 IVGRLIPAGTG 1363
>RPOC_XANC8 (Q4URD3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1405 Score = 119 bits (297), Expect = 8e-27 Identities = 69/131 (52%), Positives = 91/131 (69%), Gaps = 4/131 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRA-ERAGR 244 LV +IQ VYR QGV+I+++HIE+I RQ+ KV +++ G S FL GE + R E R Sbjct: 1234 LVKEIQDVYRLQGVKINDKHIEVITRQMLRKVEITDQGNSK-FLNGEQVERQRVIEENAR 1292 Query: 243 ALDES---IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 + + Y +LLGIT+ASL T+SFIS ASFQET RVL +AA+RG D L+GLKENV Sbjct: 1293 LVTRNELPAKYDPVLLGITKASLATESFISAASFQETTRVLTEAAVRGTRDNLRGLKENV 1352 Query: 72 VLGGIIPVGTG 40 ++G +IP GTG Sbjct: 1353 IVGRLIPAGTG 1363
>RPOC_NITOC (Q3J8Q8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1403 Score = 119 bits (297), Expect = 8e-27 Identities = 65/131 (49%), Positives = 92/131 (70%), Gaps = 4/131 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 +VN++Q+VYR QGV+I+++HIE+II Q+ KV + E G ++ FL GE I R Sbjct: 1232 IVNEVQEVYRLQGVKINDKHIEVIICQMLRKVEIIEPGDTS-FLKGEQIDKPRLLEENEK 1290 Query: 240 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 +++ + +LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV Sbjct: 1291 MEKEDKLPARFEPVLLGITKASLATESFISAASFQETTRVLTEAAVTGKCDELRGLKENV 1350 Query: 72 VLGGIIPVGTG 40 ++G +IP GTG Sbjct: 1351 IVGRLIPAGTG 1361
>RPOC_EHRCJ (Q3YST4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1410 Score = 119 bits (297), Expect = 8e-27 Identities = 65/132 (49%), Positives = 89/132 (67%), Gaps = 4/132 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 ++++IQ+VYR QGV+I N+HIEII+RQ+ KV + E G ++L GE I + + + Sbjct: 1229 MISEIQQVYRLQGVRIDNKHIEIILRQMLQKVEIFEPG-DTMYLVGENIDMEEVIKTNNS 1287 Query: 240 L----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 + Y IL GITRASL+T SF+S ASFQET +VL +AA G+ D L GLKENV Sbjct: 1288 MVKMGKSPAKYAPILQGITRASLDTNSFVSAASFQETTKVLTEAAFSGKEDSLYGLKENV 1347 Query: 72 VLGGIIPVGTGF 37 ++G +IP GTGF Sbjct: 1348 IVGRLIPAGTGF 1359
>RPOC_PROAC (Q6A6K7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1293 Score = 118 bits (296), Expect = 1e-26 Identities = 66/135 (48%), Positives = 92/135 (68%), Gaps = 4/135 (2%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGR- 244 LV ++QKVY +QG IH +HIEI+IRQ+ ++ V E G + + +PGEL+ E A R Sbjct: 1114 LVKEVQKVYNTQGAGIHEKHIEIVIRQMLRRITVIESGDTQM-MPGELVDRGAYEAANRK 1172 Query: 243 ALDES---IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 A+ E R +L+GIT+ASL T+S++S ASFQET +VL AA+ G+ D L GLKENV Sbjct: 1173 AVAEGGRPAEGRPVLMGITKASLATESWLSAASFQETTKVLTDAAINGKTDTLVGLKENV 1232 Query: 72 VLGGIIPVGTGFQKF 28 +LG +IP GTG + + Sbjct: 1233 ILGKLIPAGTGLEVY 1247
>RPOC_BACHD (Q9Z9M1) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1206 Score = 118 bits (296), Expect = 1e-26 Identities = 62/135 (45%), Positives = 91/135 (67%), Gaps = 4/135 (2%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 L+ ++QKVYR QGV+I ++H+E+++RQ+ K+RV + G + V LPG LI + + Sbjct: 1045 LLREVQKVYRMQGVEIGDKHVEVMVRQMLRKIRVIDAGDTEV-LPGSLIEIQHFNDENKK 1103 Query: 240 L----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 + R +LLGIT+ASL T SF+S ASFQET RVL AA++G+ D L GLKENV Sbjct: 1104 VLLSGKRPATGRPVLLGITKASLETDSFLSAASFQETTRVLTDAAIKGKRDELVGLKENV 1163 Query: 72 VLGGIIPVGTGFQKF 28 ++G ++P GTG ++ Sbjct: 1164 IIGKLVPAGTGMNRY 1178
>RPOBC_WOLTR (Q5GRY9) Bifunctional DNA-directed RNA polymerase, beta and beta'| chain (EC 2.7.7.6) [Includes: DNA-directed RNA polymerase beta chain (Transcriptase beta chain) (RNA polymerase beta subunit); DNA-directed RNA polymerase beta' chain (Transcri Length = 2839 Score = 118 bits (296), Expect = 1e-26 Identities = 63/131 (48%), Positives = 90/131 (68%), Gaps = 4/131 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 ++++IQ+VYR QGV+I N+H+E+I++Q+ KV +++ G ++L GE I L ++ Sbjct: 2657 MISEIQQVYRLQGVRIDNKHLEVILKQMLQKVEITDPG-DTMYLVGESIDKLEVDKGNDV 2715 Query: 240 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 + S Y IL GITRASL T+SFIS ASFQET +VL +AA G+ D L GLKENV Sbjct: 2716 MSNSGKRPACYLPILQGITRASLETKSFISAASFQETTKVLTEAAFCGKEDPLSGLKENV 2775 Query: 72 VLGGIIPVGTG 40 ++G +IP GTG Sbjct: 2776 IVGRLIPAGTG 2786
>RPOC_RALSO (Q8XUZ9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1409 Score = 118 bits (296), Expect = 1e-26 Identities = 69/149 (46%), Positives = 102/149 (68%), Gaps = 10/149 (6%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 +V+++Q VYR QGV+I+++HIE+I+RQ+ +V++ + G + F+PGE + ER+ Sbjct: 1239 IVDEVQDVYRLQGVKINDKHIEVIVRQMLRRVQIVDVGDTK-FIPGEQV-----ERS-EL 1291 Query: 240 LDES----------IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLK 91 LDE+ Y +LLGIT+ASL+T SFIS ASFQET RVL +AA+ G++D L+ Sbjct: 1292 LDENDKVIAEGKRPATYENLLLGITKASLSTDSFISAASFQETTRVLTEAAIMGKVDDLR 1351 Query: 90 GLKENVVLGGIIPVGTGFQKFVHRSPQDK 4 GLKENV++G +IP GTG HR+ + K Sbjct: 1352 GLKENVIVGRLIPAGTGLA--YHRARKAK 1378
>RPOC_HAEI8 (Q4QN34) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1416 Score = 118 bits (295), Expect = 1e-26 Identities = 63/132 (47%), Positives = 92/132 (69%), Gaps = 4/132 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 +VN++Q VYR QGV+I+++HIE+I+RQ+ K +++ + FL GE + + R + R Sbjct: 1233 IVNEVQDVYRLQGVKINDKHIEVIVRQMLRKAVITK-AYDSEFLEGEQVEVARVKIVNRQ 1291 Query: 240 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 + + + LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV Sbjct: 1292 REAEGKPPVEFERELLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENV 1351 Query: 72 VLGGIIPVGTGF 37 ++G +IP GTGF Sbjct: 1352 IVGRLIPAGTGF 1363
>RPOC_RALEJ (Q46WD5) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1415 Score = 118 bits (295), Expect = 1e-26 Identities = 67/137 (48%), Positives = 97/137 (70%), Gaps = 10/137 (7%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 +V+++Q VYR QGV+I+++HIE+I+RQ+ +V+V++ G + F+PGE + ER+ Sbjct: 1239 IVDEVQDVYRLQGVKINDKHIEVIVRQMLRRVQVADVGDTK-FIPGEQV-----ERS-EL 1291 Query: 240 LDES----------IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLK 91 LDE+ Y +LLGIT+ASL+T SFIS ASFQET RVL +AA+ G+ D L+ Sbjct: 1292 LDENDRVIAEGKRPATYENLLLGITKASLSTDSFISAASFQETTRVLTEAAIMGKTDDLR 1351 Query: 90 GLKENVVLGGIIPVGTG 40 GLKENV++G +IP GTG Sbjct: 1352 GLKENVIVGRLIPAGTG 1368
>RPOC_HAEIN (P43739) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1415 Score = 118 bits (295), Expect = 1e-26 Identities = 63/132 (47%), Positives = 92/132 (69%), Gaps = 4/132 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 +VN++Q VYR QGV+I+++HIE+I+RQ+ K +++ + FL GE + + R + R Sbjct: 1233 IVNEVQDVYRLQGVKINDKHIEVIVRQMLRKAVITK-AYDSEFLEGEQVEVARVKIVNRQ 1291 Query: 240 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 + + + LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV Sbjct: 1292 REAEGKPPVEFERELLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENV 1351 Query: 72 VLGGIIPVGTGF 37 ++G +IP GTGF Sbjct: 1352 IVGRLIPAGTGF 1363
>RPOC_LACJO (Q74L94) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1224 Score = 117 bits (294), Expect = 2e-26 Identities = 65/141 (46%), Positives = 95/141 (67%), Gaps = 4/141 (2%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGEL--IGLLRAERAG 247 ++++IQK YR QGV+I ++H+E++ RQ+ KVR+ + G +++ LPGEL IG +A Sbjct: 1050 ILSEIQKAYRMQGVEIADKHVEVMARQMLQKVRILDPGETDI-LPGELMDIGEFKARNRE 1108 Query: 246 RALDESIYYRA--ILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 + I A ++LGIT+A+L T SF+S ASFQET RVL A++RG+ D L GLKENV Sbjct: 1109 VIISGGIPATAQSVILGITKAALETNSFLSAASFQETTRVLTDASIRGKNDPLLGLKENV 1168 Query: 72 VLGGIIPVGTGFQKFVHRSPQ 10 ++G IIP GTG + P+ Sbjct: 1169 IIGKIIPAGTGMPVYREMEPK 1189
>RPOC_BRAJA (Q89J75) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1398 Score = 117 bits (294), Expect = 2e-26 Identities = 64/131 (48%), Positives = 92/131 (70%), Gaps = 4/131 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 LVN+IQ+VYR QGV I+++HIE+I+RQ+ KV V++ G +++ + GE + + + Sbjct: 1226 LVNEIQEVYRLQGVLINDKHIEVIVRQMLQKVEVTDQGDTDM-ISGEQVDKIEFDALNEK 1284 Query: 240 LDESIYYRA----ILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 E A +LLGIT+ASL T+SF S ASFQET RVL +AA+ G++D L+GLKENV Sbjct: 1285 AKEEGKKIATGTPVLLGITKASLQTRSFFSAASFQETTRVLTEAAVNGKVDPLEGLKENV 1344 Query: 72 VLGGIIPVGTG 40 ++G +IP GTG Sbjct: 1345 IVGRLIPAGTG 1355
>RPOC_XANC5 (Q3BWZ0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1404 Score = 117 bits (294), Expect = 2e-26 Identities = 69/131 (52%), Positives = 90/131 (68%), Gaps = 4/131 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRA-ERAGR 244 LV +IQ VYR QGV+I+++HIE+I RQ+ KV + + G S FL GE + R E R Sbjct: 1233 LVKEIQDVYRLQGVKINDKHIEVITRQMLRKVEIVDQGNSK-FLNGEQVERQRVIEENAR 1291 Query: 243 ALDES---IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 + + Y +LLGIT+ASL T+SFIS ASFQET RVL +AA+RG D L+GLKENV Sbjct: 1292 LVKRNELPAKYDPVLLGITKASLATESFISAASFQETTRVLTEAAVRGTRDNLRGLKENV 1351 Query: 72 VLGGIIPVGTG 40 ++G +IP GTG Sbjct: 1352 IVGRLIPAGTG 1362
>RPOC_XANAC (Q8PNS9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1404 Score = 117 bits (294), Expect = 2e-26 Identities = 69/131 (52%), Positives = 90/131 (68%), Gaps = 4/131 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRA-ERAGR 244 LV +IQ VYR QGV+I+++HIE+I RQ+ KV + + G S FL GE + R E R Sbjct: 1233 LVKEIQDVYRLQGVKINDKHIEVITRQMLRKVEIVDQGNSK-FLNGEQVERQRVIEENAR 1291 Query: 243 ALDES---IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 + + Y +LLGIT+ASL T+SFIS ASFQET RVL +AA+RG D L+GLKENV Sbjct: 1292 LVKRNELPAKYDPVLLGITKASLATESFISAASFQETTRVLTEAAVRGTRDNLRGLKENV 1351 Query: 72 VLGGIIPVGTG 40 ++G +IP GTG Sbjct: 1352 IVGRLIPAGTG 1362
>RPOC_XYLFT (Q87A33) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 117 bits (294), Expect = 2e-26 Identities = 71/137 (51%), Positives = 92/137 (67%), Gaps = 10/137 (7%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 LV +IQ VYR QGV+I+++HIE+I RQ+ KV + + G S FL GE + ER R Sbjct: 1233 LVKEIQDVYRLQGVKINDKHIEVITRQMLRKVEIVDQGNSK-FLNGEQV-----ERQ-RV 1285 Query: 240 LDESIY----------YRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLK 91 +DE+ Y +LLGIT+ASL T+SFIS ASFQET RVL +AA+RG D L+ Sbjct: 1286 IDENAKLIARNELPAKYNPVLLGITKASLATESFISAASFQETTRVLTEAAVRGTRDNLR 1345 Query: 90 GLKENVVLGGIIPVGTG 40 GLKENV++G +IP GTG Sbjct: 1346 GLKENVIVGRLIPAGTG 1362
>RPOC_XYLFA (Q9PA87) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 117 bits (294), Expect = 2e-26 Identities = 71/137 (51%), Positives = 92/137 (67%), Gaps = 10/137 (7%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 LV +IQ VYR QGV+I+++HIE+I RQ+ KV + + G S FL GE + ER R Sbjct: 1233 LVKEIQDVYRLQGVKINDKHIEVITRQMLRKVEIVDQGNSK-FLNGEQV-----ERQ-RV 1285 Query: 240 LDESIY----------YRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLK 91 +DE+ Y +LLGIT+ASL T+SFIS ASFQET RVL +AA+RG D L+ Sbjct: 1286 IDENAKLIARNELPAKYNPVLLGITKASLATESFISAASFQETTRVLTEAAVRGTRDNLR 1345 Query: 90 GLKENVVLGGIIPVGTG 40 GLKENV++G +IP GTG Sbjct: 1346 GLKENVIVGRLIPAGTG 1362
>RPOC_ERWCT (Q6DAM9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 117 bits (294), Expect = 2e-26 Identities = 65/132 (49%), Positives = 92/132 (69%), Gaps = 4/132 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 + N++Q+VYR QGV+I+++HIE+I+RQ+ K + G S FL GE + R + A R Sbjct: 1233 ITNEVQEVYRLQGVKINDKHIEVIVRQMLRKGTIVSAG-STEFLEGEQAEMSRIKIANRK 1291 Query: 240 LDE----SIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 L+ + + LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV Sbjct: 1292 LEADGKITATFSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENV 1351 Query: 72 VLGGIIPVGTGF 37 ++G +IP GTG+ Sbjct: 1352 IVGRLIPAGTGY 1363
>RPOC_BUCAI (P57145) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 117 bits (294), Expect = 2e-26 Identities = 66/132 (50%), Positives = 93/132 (70%), Gaps = 4/132 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 +VN++Q+VYR QGV+I+++HIE+IIRQ+ K V + S+ FL GE + + + R Sbjct: 1233 IVNEVQEVYRLQGVKINDKHIEVIIRQMLRKATVVKSRDSD-FLEGEQVEFSHIKISNRM 1291 Query: 240 LDESIYYRAI----LLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 LD+ A LLGIT+ASL T+SFIS ASFQET RVL ++A+ G+ D L+GLKENV Sbjct: 1292 LDKKKKMPATFSRDLLGITKASLATESFISAASFQETTRVLTESAVAGKRDELRGLKENV 1351 Query: 72 VLGGIIPVGTGF 37 ++G +IP GTG+ Sbjct: 1352 IVGRLIPAGTGY 1363
>RPOC_MANSM (Q65W40) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1420 Score = 117 bits (294), Expect = 2e-26 Identities = 63/132 (47%), Positives = 93/132 (70%), Gaps = 4/132 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 +VN++Q+VYR QGV+I+++HIE+I+RQ+ K +++ + FL GE + + R + R Sbjct: 1233 IVNEVQEVYRLQGVKINDKHIEVIVRQMLRKGIITK-AYDSEFLEGEQVEVARVKIVNRK 1291 Query: 240 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 + + + LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV Sbjct: 1292 REAEGKPPVEFERELLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENV 1351 Query: 72 VLGGIIPVGTGF 37 ++G +IP GTGF Sbjct: 1352 IVGRLIPAGTGF 1363
>RPOC_XANOR (Q8KTH8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1405 Score = 117 bits (294), Expect = 2e-26 Identities = 69/131 (52%), Positives = 90/131 (68%), Gaps = 4/131 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRA-ERAGR 244 LV +IQ VYR QGV+I+++HIE+I RQ+ KV + + G S FL GE + R E R Sbjct: 1234 LVKEIQDVYRLQGVKINDKHIEVITRQMLRKVEIVDQGNSK-FLNGEQVERQRVIEENAR 1292 Query: 243 ALDES---IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 + + Y +LLGIT+ASL T+SFIS ASFQET RVL +AA+RG D L+GLKENV Sbjct: 1293 LVKRNELPAKYDPVLLGITKASLATESFISAASFQETTRVLTEAAVRGTRDNLRGLKENV 1352 Query: 72 VLGGIIPVGTG 40 ++G +IP GTG Sbjct: 1353 IVGRLIPAGTG 1363
>RPOC_BURS3 (Q39KH4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1414 Score = 117 bits (294), Expect = 2e-26 Identities = 66/137 (48%), Positives = 98/137 (71%), Gaps = 10/137 (7%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 +V+++Q VYR QGV+I+++HIE+I+RQ+ +V+++++G + F+PGE + ER+ Sbjct: 1239 IVDEVQDVYRLQGVKINDKHIEVIVRQMLRRVQITDNGDTR-FIPGEQV-----ERSDM- 1291 Query: 240 LDES----------IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLK 91 LDE+ Y +LLGIT+ASL+T SFIS ASFQET RVL +AA+ G+ D L+ Sbjct: 1292 LDENDRMIAEDKRPASYDNVLLGITKASLSTDSFISAASFQETTRVLTEAAIMGKRDDLR 1351 Query: 90 GLKENVVLGGIIPVGTG 40 GLKENV++G +IP GTG Sbjct: 1352 GLKENVIVGRLIPAGTG 1368
>RPOC_BORPE (Q7W0R8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1414 Score = 117 bits (294), Expect = 2e-26 Identities = 64/142 (45%), Positives = 95/142 (66%), Gaps = 4/142 (2%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIG----LLRAER 253 +V+++Q VYR QGV+I+++HIE+I+RQ+ +V + + G + F+PGE + L +R Sbjct: 1232 IVDEVQDVYRLQGVKINDKHIEVIVRQMLRRVNIVDPGDTE-FIPGEQVERSELLNENDR 1290 Query: 252 AGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 Y +LLGIT+ASL+T SFIS ASFQET RVL +AA+ G+ D L+GLKENV Sbjct: 1291 VVAEDKRPASYDNVLLGITKASLSTDSFISAASFQETTRVLTEAAIMGKRDDLRGLKENV 1350 Query: 72 VLGGIIPVGTGFQKFVHRSPQD 7 ++G +IP GTG + R ++ Sbjct: 1351 IVGRLIPAGTGLAYHIARKDKE 1372
>RPOC_BORPA (Q7W2G8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1414 Score = 117 bits (294), Expect = 2e-26 Identities = 64/142 (45%), Positives = 95/142 (66%), Gaps = 4/142 (2%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIG----LLRAER 253 +V+++Q VYR QGV+I+++HIE+I+RQ+ +V + + G + F+PGE + L +R Sbjct: 1232 IVDEVQDVYRLQGVKINDKHIEVIVRQMLRRVNIVDPGDTE-FIPGEQVERSELLNENDR 1290 Query: 252 AGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 Y +LLGIT+ASL+T SFIS ASFQET RVL +AA+ G+ D L+GLKENV Sbjct: 1291 VVAEDKRPASYDNVLLGITKASLSTDSFISAASFQETTRVLTEAAIMGKRDDLRGLKENV 1350 Query: 72 VLGGIIPVGTGFQKFVHRSPQD 7 ++G +IP GTG + R ++ Sbjct: 1351 IVGRLIPAGTGLAYHIARKDKE 1372
>RPOC_BORBR (Q7WRD8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1414 Score = 117 bits (294), Expect = 2e-26 Identities = 64/142 (45%), Positives = 95/142 (66%), Gaps = 4/142 (2%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIG----LLRAER 253 +V+++Q VYR QGV+I+++HIE+I+RQ+ +V + + G + F+PGE + L +R Sbjct: 1232 IVDEVQDVYRLQGVKINDKHIEVIVRQMLRRVNIVDPGDTE-FIPGEQVERSELLNENDR 1290 Query: 252 AGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 Y +LLGIT+ASL+T SFIS ASFQET RVL +AA+ G+ D L+GLKENV Sbjct: 1291 VVAEDKRPASYDNVLLGITKASLSTDSFISAASFQETTRVLTEAAIMGKRDDLRGLKENV 1350 Query: 72 VLGGIIPVGTGFQKFVHRSPQD 7 ++G +IP GTG + R ++ Sbjct: 1351 IVGRLIPAGTGLAYHIARKDKE 1372
>RPOC_RHIME (Q92QH6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1401 Score = 117 bits (293), Expect = 2e-26 Identities = 63/131 (48%), Positives = 92/131 (70%), Gaps = 4/131 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 LVN+IQ+VYR QGV I+++HIE+I+RQ+ KV +++ G S ++ G+ + + E + Sbjct: 1227 LVNEIQEVYRLQGVVINDKHIEVIVRQMLQKVEITDAGDST-YIVGDNVDRIELEDVNDS 1285 Query: 240 L----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 L + + +LLGIT+ASL T SFIS ASFQET +VL +AA+ G+ D L+GLKENV Sbjct: 1286 LLAEGKKPAFGEPVLLGITKASLQTPSFISAASFQETTKVLTEAAVAGKTDNLQGLKENV 1345 Query: 72 VLGGIIPVGTG 40 ++G +IP GTG Sbjct: 1346 IVGRLIPAGTG 1356
>RPOC_YERPS (Q66FQ1) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1406 Score = 117 bits (293), Expect = 2e-26 Identities = 66/133 (49%), Positives = 95/133 (71%), Gaps = 5/133 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 + N++Q+VYR QGV+I+++HIE+I+RQ+ K + + G ++ FL GE + R + A R Sbjct: 1233 ITNEVQEVYRLQGVKINDKHIEVIVRQMLRKGTIVDAGSTD-FLEGEQAEMSRVKIANRK 1291 Query: 240 LD-----ESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKEN 76 L E+ + R LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKEN Sbjct: 1292 LAAEGKIEATFTRD-LLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKEN 1350 Query: 75 VVLGGIIPVGTGF 37 V++G +IP GTG+ Sbjct: 1351 VIVGRLIPAGTGY 1363
>RPOC_YERPE (Q8D1H3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1406 Score = 117 bits (293), Expect = 2e-26 Identities = 66/133 (49%), Positives = 95/133 (71%), Gaps = 5/133 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 + N++Q+VYR QGV+I+++HIE+I+RQ+ K + + G ++ FL GE + R + A R Sbjct: 1233 ITNEVQEVYRLQGVKINDKHIEVIVRQMLRKGTIVDAGSTD-FLEGEQAEMSRVKIANRK 1291 Query: 240 LD-----ESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKEN 76 L E+ + R LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKEN Sbjct: 1292 LAAEGKIEATFTRD-LLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKEN 1350 Query: 75 VVLGGIIPVGTGF 37 V++G +IP GTG+ Sbjct: 1351 VIVGRLIPAGTGY 1363
>RPOC_BLOFL (Q7VRP8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1420 Score = 117 bits (293), Expect = 2e-26 Identities = 64/132 (48%), Positives = 93/132 (70%), Gaps = 4/132 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 +VN++Q+VYR QGV+I+++HIE+IIRQ+ K V G S+ FL GE + R + + Sbjct: 1244 IVNEVQEVYRLQGVKINDKHIEVIIRQMLRKAIVIRSGDSD-FLAGEQVEYARIKIVNQT 1302 Query: 240 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 L+ + + LLGIT+ASL T+SFIS ASFQET RVL ++++ G+ D L+GLKENV Sbjct: 1303 LEREGKVKVSFVRNLLGITKASLATESFISAASFQETTRVLTESSVAGKKDDLRGLKENV 1362 Query: 72 VLGGIIPVGTGF 37 ++G +IP GTG+ Sbjct: 1363 IVGRLIPAGTGY 1374
>RPOC_BURPS (Q63Q04) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1412 Score = 117 bits (292), Expect = 3e-26 Identities = 67/137 (48%), Positives = 97/137 (70%), Gaps = 10/137 (7%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 +V+++Q VYR QGV+I+++HIE+I+RQ+ +V++ ++G + F+PGE + ER+ Sbjct: 1239 IVDEVQDVYRLQGVKINDKHIEVIVRQMLRRVQIVDNGDTR-FIPGEQV-----ERSDM- 1291 Query: 240 LDES----------IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLK 91 LDE+ Y ILLGIT+ASL+T SFIS ASFQET RVL +AA+ G+ D L+ Sbjct: 1292 LDENDRMIAEDKRPATYDNILLGITKASLSTDSFISAASFQETTRVLTEAAIMGKRDDLR 1351 Query: 90 GLKENVVLGGIIPVGTG 40 GLKENV++G +IP GTG Sbjct: 1352 GLKENVIVGRLIPAGTG 1368
>RPOC_BURP1 (Q3JMQ4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1412 Score = 117 bits (292), Expect = 3e-26 Identities = 67/137 (48%), Positives = 97/137 (70%), Gaps = 10/137 (7%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 +V+++Q VYR QGV+I+++HIE+I+RQ+ +V++ ++G + F+PGE + ER+ Sbjct: 1239 IVDEVQDVYRLQGVKINDKHIEVIVRQMLRRVQIVDNGDTR-FIPGEQV-----ERSDM- 1291 Query: 240 LDES----------IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLK 91 LDE+ Y ILLGIT+ASL+T SFIS ASFQET RVL +AA+ G+ D L+ Sbjct: 1292 LDENDRMIAEDKRPATYDNILLGITKASLSTDSFISAASFQETTRVLTEAAIMGKRDDLR 1351 Query: 90 GLKENVVLGGIIPVGTG 40 GLKENV++G +IP GTG Sbjct: 1352 GLKENVIVGRLIPAGTG 1368
>RPOC_BURMA (Q62GJ7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1412 Score = 117 bits (292), Expect = 3e-26 Identities = 67/137 (48%), Positives = 97/137 (70%), Gaps = 10/137 (7%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 +V+++Q VYR QGV+I+++HIE+I+RQ+ +V++ ++G + F+PGE + ER+ Sbjct: 1239 IVDEVQDVYRLQGVKINDKHIEVIVRQMLRRVQIVDNGDTR-FIPGEQV-----ERSDM- 1291 Query: 240 LDES----------IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLK 91 LDE+ Y ILLGIT+ASL+T SFIS ASFQET RVL +AA+ G+ D L+ Sbjct: 1292 LDENDRMIAEDKRPATYDNILLGITKASLSTDSFISAASFQETTRVLTEAAIMGKRDDLR 1351 Query: 90 GLKENVVLGGIIPVGTG 40 GLKENV++G +IP GTG Sbjct: 1352 GLKENVIVGRLIPAGTG 1368
>RPOC_CHRVO (Q7NQE7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1396 Score = 117 bits (292), Expect = 3e-26 Identities = 66/144 (45%), Positives = 98/144 (68%), Gaps = 4/144 (2%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIG----LLRAER 253 +V ++Q+VYR QGV+I+++HIE+IIRQ+ +V +++ G + F+ GE + L ++ Sbjct: 1234 IVQEVQEVYRLQGVKINDKHIEVIIRQMLRRVIITDSGDTE-FIQGEQVERADVLEMNDK 1292 Query: 252 AGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 E Y +LLGIT+ASL+T SFIS ASFQET RVL +AA+ G+ D L+GLKENV Sbjct: 1293 MMAENKEPAQYENVLLGITKASLSTDSFISAASFQETTRVLTEAAIMGKRDDLRGLKENV 1352 Query: 72 VLGGIIPVGTGFQKFVHRSPQDKN 1 ++G +IP GTG HR+ + +N Sbjct: 1353 IVGRLIPAGTGLA--YHRTRRRQN 1374
>RPOC_LEPIN (Q8F0S3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1404 Score = 116 bits (291), Expect = 4e-26 Identities = 61/137 (44%), Positives = 94/137 (68%), Gaps = 3/137 (2%) Frame = -2 Query: 429 RISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 250 ++ LV ++Q+VYR QGV I+++HIE+++RQ+ KV +++ G ++ ++ L+ E Sbjct: 1231 QVYLVQEVQEVYRLQGVHINDKHIEVVVRQMLRKVLITDSGDTSFVNQQQIDRLVFNEEN 1290 Query: 249 GRALDES---IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKE 79 R + E ILLG+T+ASLNT+SF S ASFQET +VL AA++G+ D L GLKE Sbjct: 1291 KRVIAEGGSPAESVPILLGLTKASLNTESFFSAASFQETTKVLTDAAIKGKTDNLMGLKE 1350 Query: 78 NVVLGGIIPVGTGFQKF 28 NV++G +IP GTG +K+ Sbjct: 1351 NVIIGHMIPAGTGTKKY 1367
>RPOC_LEPIC (Q72UA7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1404 Score = 116 bits (291), Expect = 4e-26 Identities = 61/137 (44%), Positives = 94/137 (68%), Gaps = 3/137 (2%) Frame = -2 Query: 429 RISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 250 ++ LV ++Q+VYR QGV I+++HIE+++RQ+ KV +++ G ++ ++ L+ E Sbjct: 1231 QVYLVQEVQEVYRLQGVHINDKHIEVVVRQMLRKVLITDSGDTSFVNQQQIDRLVFNEEN 1290 Query: 249 GRALDES---IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKE 79 R + E ILLG+T+ASLNT+SF S ASFQET +VL AA++G+ D L GLKE Sbjct: 1291 KRVIAEGGSPAESVPILLGLTKASLNTESFFSAASFQETTKVLTDAAIKGKTDNLMGLKE 1350 Query: 78 NVVLGGIIPVGTGFQKF 28 NV++G +IP GTG +K+ Sbjct: 1351 NVIIGHMIPAGTGTKKY 1367
>RPOC_RICCN (Q9RH40) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1372 Score = 116 bits (291), Expect = 4e-26 Identities = 64/132 (48%), Positives = 91/132 (68%), Gaps = 4/132 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAG-R 244 +VN++Q VYR QGV+I ++HIE+IIRQ+ KV V++ G L GE I + + Sbjct: 1225 IVNEVQAVYRLQGVKIDDKHIEVIIRQMLQKVEVTDSG-GTTLLVGEKIDRHEFDEINEK 1283 Query: 243 ALDESIY---YRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 A+ + + IL GIT+ASL T+SFIS ASFQET RVL +AA+ G++D L+GLKENV Sbjct: 1284 AMKNGLKPAEAQLILQGITKASLQTRSFISAASFQETTRVLTEAAIAGKVDKLRGLKENV 1343 Query: 72 VLGGIIPVGTGF 37 ++G ++P GTG+ Sbjct: 1344 IVGRLVPAGTGY 1355
>RPOC_RHOPA (Q6N4S0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1402 Score = 116 bits (291), Expect = 4e-26 Identities = 62/131 (47%), Positives = 94/131 (71%), Gaps = 4/131 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAG-R 244 LVN+IQ+VYR QGV I+++HIE+I+RQ+ K+ +++ G +++ + GE + + + Sbjct: 1229 LVNEIQEVYRLQGVLINDKHIEVIVRQMLQKIEITDQGDTDM-ISGEQVDKIEFNALNAK 1287 Query: 243 ALDES---IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 A++E +LLGIT+ASL T+SF S ASFQET RVL +AA+ G++D L+GLKENV Sbjct: 1288 AVEEGKKPATGNPVLLGITKASLQTRSFFSAASFQETTRVLTEAAVNGKVDPLEGLKENV 1347 Query: 72 VLGGIIPVGTG 40 ++G +IP GTG Sbjct: 1348 IVGRLIPAGTG 1358
>RPOC_NITEU (Q82T76) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1404 Score = 116 bits (290), Expect = 5e-26 Identities = 63/129 (48%), Positives = 90/129 (69%), Gaps = 4/129 (3%) Frame = -2 Query: 414 NKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIG----LLRAERAG 247 N++Q VYR QGV+I+++HIE+I+RQ+ +V++ G S+ F+PGE + L E+ Sbjct: 1247 NEVQDVYRLQGVRINDKHIEVIVRQMLRRVQIMNAGDSS-FIPGEQVERAEVLTENEKLI 1305 Query: 246 RALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVL 67 Y +LLGIT+ASL+T SFIS ASFQET RVL +A++ G+ D L+GLKENV++ Sbjct: 1306 AENKMPATYEYVLLGITKASLSTDSFISAASFQETTRVLTEASIMGKKDDLRGLKENVIV 1365 Query: 66 GGIIPVGTG 40 G +IP GTG Sbjct: 1366 GRLIPAGTG 1374
>RPOC_RICFE (Q4UKD5) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1372 Score = 115 bits (289), Expect = 6e-26 Identities = 64/132 (48%), Positives = 90/132 (68%), Gaps = 4/132 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAG-R 244 +V ++Q VYR QGV+I ++HIE+IIRQ+ KV +++ G L GE I E + Sbjct: 1225 IVKEVQAVYRLQGVKIDDKHIEVIIRQMLQKVEITDSG-GTTLLAGEKIDRHEFEEINEK 1283 Query: 243 ALDESIY---YRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 A+ + + IL GIT+ASL T+SFIS ASFQET RVL +AA+ G+ID L+GLKENV Sbjct: 1284 AIKNGLKPAEAQLILQGITKASLQTRSFISAASFQETTRVLTEAAIAGKIDKLRGLKENV 1343 Query: 72 VLGGIIPVGTGF 37 ++G ++P GTG+ Sbjct: 1344 IVGRLVPAGTGY 1355
>RPOC_COXBU (Q83ET0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1414 Score = 115 bits (289), Expect = 6e-26 Identities = 62/132 (46%), Positives = 92/132 (69%), Gaps = 4/132 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 +VN++Q+VYR QGV+I+++HIE+I+RQ+ KV++++ G +++ L E + R Sbjct: 1232 IVNEVQEVYRLQGVKINDKHIEVIVRQMLRKVKITQPGDTDL-LQNEQVERTRVREENEK 1290 Query: 240 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 + + ILLGIT+ASL T+SFIS ASFQET RVL A++ G+ D L+GLKENV Sbjct: 1291 IIKKDGTVAKVEPILLGITKASLATESFISAASFQETTRVLTAASVAGKRDDLRGLKENV 1350 Query: 72 VLGGIIPVGTGF 37 ++G +IP GTGF Sbjct: 1351 IVGRLIPAGTGF 1362
>RPOC_IDILO (Q5QWA4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1411 Score = 115 bits (289), Expect = 6e-26 Identities = 66/135 (48%), Positives = 97/135 (71%), Gaps = 7/135 (5%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGL-------LR 262 +VN++Q+VYR QGV+I+++HIE I+RQ+ K + G +N+ L GE++ + + Sbjct: 1233 IVNEVQEVYRLQGVKINDKHIETIVRQMLRKALILRAGDTNL-LEGEMVEMSEVLAANAK 1291 Query: 261 AERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLK 82 AE G+ +I+ R LLGIT+ASL+T+SFIS ASFQET RVL +AA+ G+ D L+GLK Sbjct: 1292 AEADGKK--PAIFERQ-LLGITKASLSTESFISAASFQETTRVLTEAAVGGKKDSLRGLK 1348 Query: 81 ENVVLGGIIPVGTGF 37 ENV++G +IP GTG+ Sbjct: 1349 ENVIVGRLIPAGTGY 1363
>RPOC_EHRRW (Q5HC04) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1411 Score = 115 bits (289), Expect = 6e-26 Identities = 63/132 (47%), Positives = 89/132 (67%), Gaps = 4/132 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 ++ +IQ+VYR QGV+I N+HIE+I+RQ+ KV + E G ++L GE + + + Sbjct: 1228 MIAEIQQVYRLQGVRIDNKHIEVILRQMLQKVEIFEPG-DTMYLVGENVDVEEVLKTNSN 1286 Query: 240 LDE----SIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 +++ Y IL GITRASL+T SF+S ASFQET +VL +AA G+ D L GLKENV Sbjct: 1287 MEKIGKSPAKYIPILQGITRASLDTNSFVSAASFQETTKVLTEAAFSGKEDSLYGLKENV 1346 Query: 72 VLGGIIPVGTGF 37 ++G +IP GTGF Sbjct: 1347 IVGRLIPAGTGF 1358
>RPOC_EHRRG (Q5FFD8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1411 Score = 115 bits (288), Expect = 8e-26 Identities = 63/132 (47%), Positives = 89/132 (67%), Gaps = 4/132 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 ++ +IQ+VYR QGV+I N+HIE+I+RQ+ KV + E G ++L GE + + + Sbjct: 1228 MIAEIQQVYRLQGVRIDNKHIEVILRQMLQKVEIFEPG-DTMYLIGENVDVEEVLKTNSN 1286 Query: 240 LDE----SIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 +++ Y IL GITRASL+T SF+S ASFQET +VL +AA G+ D L GLKENV Sbjct: 1287 MEKIGKSPAKYIPILQGITRASLDTNSFVSAASFQETTKVLTEAAFSGKEDSLYGLKENV 1346 Query: 72 VLGGIIPVGTGF 37 ++G +IP GTGF Sbjct: 1347 IVGRLIPAGTGF 1358
>RPOC_BUCBP (Q89B21) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1404 Score = 115 bits (288), Expect = 8e-26 Identities = 64/132 (48%), Positives = 93/132 (70%), Gaps = 4/132 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 ++N++Q+VYR QGV+I+++HIE+IIRQ+ K + + S FL GE + R + + R Sbjct: 1233 IINEVQEVYRLQGVKINDKHIEVIIRQMLRKATIIKSEHSE-FLDGEQVEYSRIKVSNRN 1291 Query: 240 LDESIYYRAI----LLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 L + AI LLGIT+ASL T+SFIS ASFQET RVL ++++ G+ D L+GLKENV Sbjct: 1292 LSKIGKKTAIFSRDLLGITKASLATESFISAASFQETTRVLTESSVAGKKDELRGLKENV 1351 Query: 72 VLGGIIPVGTGF 37 ++G +IP GTG+ Sbjct: 1352 IVGRLIPAGTGY 1363
>RPOC_DEHSC (Q3ZX00) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1295 Score = 115 bits (288), Expect = 8e-26 Identities = 62/127 (48%), Positives = 88/127 (69%), Gaps = 4/127 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 LV ++QKVY SQGV I+++HIE+I RQ+ KVR+ G +++ +PGEL+ R E Sbjct: 1136 LVEEVQKVYYSQGVHINDKHIEVIARQMLIKVRIDSSGDTDL-VPGELVDKFRYEDINAK 1194 Query: 240 L----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 + E +L+GITRASL+T+S+++ ASFQET RVL AA+ GR+D L GLKENV Sbjct: 1195 VLAEGGEPATAHTVLMGITRASLSTESWLAAASFQETTRVLTDAAIYGRVDKLSGLKENV 1254 Query: 72 VLGGIIP 52 ++G +IP Sbjct: 1255 IIGKLIP 1261
>RPOC_CHLCV (Q822J2) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1393 Score = 115 bits (288), Expect = 8e-26 Identities = 65/132 (49%), Positives = 87/132 (65%), Gaps = 4/132 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 LVN++Q+VYR QGV I+++HIEII+RQ+ KVR+++ G L GE + R Sbjct: 1234 LVNEVQEVYRLQGVDINDKHIEIIVRQMLQKVRITDPG-DTTLLFGEEVNKKEFYEENRR 1292 Query: 240 LDESIYYRA----ILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 +E A +LLGIT+ASL T+SFIS ASFQ+T RVL AA + D+L G KENV Sbjct: 1293 TEEDGGKPAQAVPVLLGITKASLGTESFISAASFQDTTRVLTDAACSSKTDYLLGFKENV 1352 Query: 72 VLGGIIPVGTGF 37 ++G +IP GTGF Sbjct: 1353 IMGHMIPGGTGF 1364
>RPOC_CHLPN (Q9Z999) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1393 Score = 115 bits (287), Expect = 1e-25 Identities = 65/133 (48%), Positives = 88/133 (66%), Gaps = 4/133 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 LVN++Q+VYR QGV I+++HIEII+RQ+ KVR+++ G L GE + R Sbjct: 1234 LVNEVQEVYRLQGVDINDKHIEIIVRQMLQKVRITDPG-DTTLLFGEDVNKKEFYEENRR 1292 Query: 240 LDESIYYRA----ILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 +E A +LLGIT+ASL T+SFIS ASFQ+T RVL AA + D+L G KENV Sbjct: 1293 TEEDGGKPAQAVPVLLGITKASLGTESFISAASFQDTTRVLTDAACCSKTDYLLGFKENV 1352 Query: 72 VLGGIIPVGTGFQ 34 ++G +IP GTGF+ Sbjct: 1353 IMGHMIPGGTGFE 1365
>RPOC_AQUPY (Q9X6Y2) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1576 Score = 114 bits (286), Expect = 1e-25 Identities = 64/138 (46%), Positives = 94/138 (68%), Gaps = 7/138 (5%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIG-------LLR 262 L+ ++Q VY+ QGV I+++H EIIIRQ+ KVR+ + G S FL GE + + R Sbjct: 1418 LLKEVQMVYKLQGVDINDKHFEIIIRQMLKKVRIIDPGDSR-FLVGEEVDKEELEEEIQR 1476 Query: 261 AERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLK 82 + G L ++ +L+GITRA+L+T+S+IS ASFQET RVL A++ G+ID L+GLK Sbjct: 1477 IKLEGGKLPKA---EPVLVGITRAALSTRSWISAASFQETTRVLTDASVEGKIDELRGLK 1533 Query: 81 ENVVLGGIIPVGTGFQKF 28 ENV++G +IP GTG ++ Sbjct: 1534 ENVIIGNLIPAGTGVDEY 1551
>RPOC_CHLMU (Q9PK79) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1396 Score = 114 bits (286), Expect = 1e-25 Identities = 65/132 (49%), Positives = 87/132 (65%), Gaps = 4/132 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 LVN++Q+VYR QGV I+++HIEII+RQ+ KVR+++ G L GE + R Sbjct: 1236 LVNEVQEVYRLQGVDINDKHIEIIVRQMLQKVRITDPG-DTTLLFGEDVDKKEFYEENRR 1294 Query: 240 LDESIYYRA----ILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 +E A +LLGIT+ASL T+SFIS ASFQ+T RVL AA + D+L G KENV Sbjct: 1295 TEEDGGKPAQAVPVLLGITKASLGTESFISAASFQDTTRVLTDAACSSKTDYLLGFKENV 1354 Query: 72 VLGGIIPVGTGF 37 ++G +IP GTGF Sbjct: 1355 IMGHMIPGGTGF 1366
>RPOC_AQUAE (O67763) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1574 Score = 114 bits (285), Expect = 2e-25 Identities = 64/138 (46%), Positives = 94/138 (68%), Gaps = 7/138 (5%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIG-------LLR 262 L+ ++Q VY+ QGV I+++H EIII+Q+ KVR+ + G S FL GE + + R Sbjct: 1418 LLKEVQMVYKLQGVDINDKHFEIIIKQMLKKVRIIDPGDSR-FLVGEEVDKEELEEEIQR 1476 Query: 261 AERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLK 82 + G L ++ +L+GITRA+L+T+S+IS ASFQET RVL A++ G+ID L+GLK Sbjct: 1477 IKLEGGKLPKA---EPVLVGITRAALSTRSWISAASFQETTRVLTDASVEGKIDELRGLK 1533 Query: 81 ENVVLGGIIPVGTGFQKF 28 ENV++G IIP GTG ++ Sbjct: 1534 ENVIIGNIIPAGTGVDEY 1551
>RPOC_SYMTH (Q67JT4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1179 Score = 114 bits (285), Expect = 2e-25 Identities = 64/135 (47%), Positives = 92/135 (68%), Gaps = 4/135 (2%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAG-R 244 L+ ++QKVY QGV I+++HIEI++RQ+ KV+V + G +++ LPG + + E R Sbjct: 1025 LLREVQKVYNLQGVDINDKHIEIMVRQMLRKVKVEDPGDTDL-LPGGFVDIFDFEDENER 1083 Query: 243 ALDES---IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 + E R +LLGIT+ASL T SF+S ASFQET RVL AA++G+ D L GLKENV Sbjct: 1084 VIMEGGVPAVARPMLLGITKASLATDSFLSAASFQETTRVLTDAAIKGKRDPLLGLKENV 1143 Query: 72 VLGGIIPVGTGFQKF 28 ++G +IP GTG ++ Sbjct: 1144 IIGKLIPAGTGMGRY 1158
>RPOC_RICTY (Q68XM7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1372 Score = 114 bits (285), Expect = 2e-25 Identities = 63/132 (47%), Positives = 90/132 (68%), Gaps = 4/132 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAG-R 244 +V ++Q VYR QGV+I ++HIE+IIRQ+ KV V++ G L GE I + + Sbjct: 1225 IVKEVQAVYRLQGVKIDDKHIEVIIRQMLQKVEVTDSG-GTTLLVGEKIDRHEFDEINEK 1283 Query: 243 ALDESIY---YRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 A+ + + IL GIT+ASL T+SFIS ASFQET RVL +AA+ G++D L+GLKENV Sbjct: 1284 AMKNGLKPAEAQLILQGITKASLQTRSFISAASFQETTRVLTEAAIAGKVDKLRGLKENV 1343 Query: 72 VLGGIIPVGTGF 37 ++G ++P GTG+ Sbjct: 1344 IVGRLVPAGTGY 1355
>RPOC_RICPR (Q9ZE20) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1372 Score = 114 bits (285), Expect = 2e-25 Identities = 63/132 (47%), Positives = 90/132 (68%), Gaps = 4/132 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAG-R 244 +V ++Q VYR QGV+I ++HIE+IIRQ+ KV V++ G L GE I + + Sbjct: 1225 IVKEVQAVYRLQGVKIDDKHIEVIIRQMLQKVEVTDSG-GTTLLVGEKIDRHEFDEINAK 1283 Query: 243 ALDESIY---YRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 A+ + + IL GIT+ASL T+SFIS ASFQET RVL +AA+ G++D L+GLKENV Sbjct: 1284 AMKNGLKPAEAQLILQGITKASLQTRSFISAASFQETTRVLTEAAIAGKVDKLRGLKENV 1343 Query: 72 VLGGIIPVGTGF 37 ++G ++P GTG+ Sbjct: 1344 IVGRLVPAGTGY 1355
>RPOC_DEHE1 (Q3Z8V3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1295 Score = 114 bits (285), Expect = 2e-25 Identities = 61/127 (48%), Positives = 88/127 (69%), Gaps = 4/127 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 LV ++QKVY SQGV I+++HIE+I RQ+ KVR+ G +++ +PGEL+ R E Sbjct: 1136 LVEEVQKVYYSQGVHINDKHIEVIARQMLIKVRIDSSGDTDL-VPGELVDKFRYEDINAK 1194 Query: 240 L----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 + E +L+GITRASL+T+S+++ ASFQET RVL AA+ G++D L GLKENV Sbjct: 1195 VLAEGGEPATAHTVLMGITRASLSTESWLAAASFQETTRVLTDAAIYGKVDKLSGLKENV 1254 Query: 72 VLGGIIP 52 ++G +IP Sbjct: 1255 IIGKLIP 1261
>RPOC_CHLTR (O84316) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1396 Score = 114 bits (285), Expect = 2e-25 Identities = 64/132 (48%), Positives = 87/132 (65%), Gaps = 4/132 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 LVN++Q+VYR QGV I+++H+EII+RQ+ KVR+++ G L GE + R Sbjct: 1236 LVNEVQEVYRLQGVDINDKHVEIIVRQMLQKVRITDPG-DTTLLFGEDVDKKEFYEENRR 1294 Query: 240 LDESIYYRA----ILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 +E A +LLGIT+ASL T+SFIS ASFQ+T RVL AA + D+L G KENV Sbjct: 1295 TEEDGGKPAQAVPVLLGITKASLGTESFISAASFQDTTRVLTDAACSSKTDYLLGFKENV 1354 Query: 72 VLGGIIPVGTGF 37 ++G +IP GTGF Sbjct: 1355 IMGHMIPGGTGF 1366
>RPOC_CHLTA (Q3KM48) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1396 Score = 114 bits (285), Expect = 2e-25 Identities = 64/132 (48%), Positives = 87/132 (65%), Gaps = 4/132 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 LVN++Q+VYR QGV I+++H+EII+RQ+ KVR+++ G L GE + R Sbjct: 1236 LVNEVQEVYRLQGVDINDKHVEIIVRQMLQKVRITDPG-DTTLLFGEDVDKKEFYEENRR 1294 Query: 240 LDESIYYRA----ILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 +E A +LLGIT+ASL T+SFIS ASFQ+T RVL AA + D+L G KENV Sbjct: 1295 TEEDGGKPAQAVPVLLGITKASLGTESFISAASFQDTTRVLTDAACSSKTDYLLGFKENV 1354 Query: 72 VLGGIIPVGTGF 37 ++G +IP GTGF Sbjct: 1355 IMGHMIPGGTGF 1366
>RPOC_AZOSE (Q5P338) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1409 Score = 114 bits (285), Expect = 2e-25 Identities = 65/150 (43%), Positives = 98/150 (65%), Gaps = 12/150 (8%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 +++++Q VYR QGV+I+++HIE+I+RQ+ +V +++ G S +R E+ R+ Sbjct: 1237 IIDEVQDVYRLQGVKINDKHIEVIVRQMLRRVVINDAGNSR---------FIREEQVERS 1287 Query: 240 --LDES----------IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDW 97 LDE+ Y+ +LLGIT+ASL+T SFIS ASFQET RVL +AA+ G+ D Sbjct: 1288 EVLDENDRIEAEGKLPAQYQNVLLGITKASLSTDSFISAASFQETTRVLTEAAIMGKRDD 1347 Query: 96 LKGLKENVVLGGIIPVGTGFQKFVHRSPQD 7 L+GLKENV++G +IP GTG +R Q+ Sbjct: 1348 LRGLKENVIVGRLIPAGTGMAYHRNRKAQN 1377
>RPOC_CHLAB (Q5L5I4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1393 Score = 114 bits (284), Expect = 2e-25 Identities = 63/132 (47%), Positives = 87/132 (65%), Gaps = 4/132 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 LVN++Q+VYR QGV I+++H+EII+RQ+ KVR+++ G L GE + + Sbjct: 1234 LVNEVQEVYRLQGVDINDKHVEIIVRQMLQKVRITDPG-DTTLLFGEEVNKKEFYEENKR 1292 Query: 240 LDESIYYRA----ILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 +E A +LLGIT+ASL T+SFIS ASFQ+T RVL AA + D+L G KENV Sbjct: 1293 TEEEGGKPAQAVPVLLGITKASLGTESFISAASFQDTTRVLTDAACSSKTDYLLGFKENV 1352 Query: 72 VLGGIIPVGTGF 37 ++G +IP GTGF Sbjct: 1353 IMGHMIPGGTGF 1364
>RPOC_BDEBA (Q6MJ10) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1375 Score = 114 bits (284), Expect = 2e-25 Identities = 62/135 (45%), Positives = 90/135 (66%), Gaps = 4/135 (2%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIG----LLRAER 253 LV++IQ+VYR QGV I+++HIE+I+RQ+ KV + + G S FL GE + + ER Sbjct: 1213 LVDEIQEVYRLQGVGINDKHIEVIVRQMLRKVEIRDAGDSR-FLAGEQVERYAYMEENER 1271 Query: 252 AGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 + + +LLGIT+ SL+T S+IS ASFQET +VL +AA+ R D L+GLKEN+ Sbjct: 1272 INKEGGQPATCSPLLLGITKVSLSTDSWISAASFQETTKVLTEAAINSRTDHLRGLKENI 1331 Query: 72 VLGGIIPVGTGFQKF 28 ++G +IP GTG + Sbjct: 1332 IMGRLIPAGTGLTSY 1346
>RPOC_THIDA (Q3SLQ5) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1398 Score = 113 bits (283), Expect = 3e-25 Identities = 63/131 (48%), Positives = 92/131 (70%), Gaps = 4/131 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIG----LLRAER 253 + +++Q VYR QGV+I+++HIE+I+RQ+ +V V++ G + + +PGE + L + Sbjct: 1233 ITDEVQDVYRLQGVKINDKHIEVIVRQMLRRVVVADPGDTGL-IPGEQVERSEVLQINDE 1291 Query: 252 AGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 A E Y ILLGIT+ASL+T SFIS ASFQET RVL +AA+ G+ D L+GLKENV Sbjct: 1292 MIAAGKEPAVYDPILLGITKASLSTDSFISAASFQETTRVLTEAAIMGKKDELRGLKENV 1351 Query: 72 VLGGIIPVGTG 40 ++G +IP G+G Sbjct: 1352 IVGRLIPAGSG 1362
>RPOC_RHOS4 (Q3J5S9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1415 Score = 113 bits (283), Expect = 3e-25 Identities = 60/131 (45%), Positives = 93/131 (70%), Gaps = 4/131 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAG-R 244 +++++Q+VYR QGV+I+++HIE+I+RQ+ K + + G + + L GE + + + Sbjct: 1229 MIDEVQEVYRLQGVKINDKHIEVIVRQMLQKYEILDSGETTL-LKGEHVDKAELDEVNQK 1287 Query: 243 ALDESI---YYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 A+D + + ILLGIT+ASL T+SFIS ASFQET RVL +A+++G+ D L GLKENV Sbjct: 1288 AMDHGMRPAHAEPILLGITKASLQTRSFISAASFQETTRVLTEASVQGKRDKLVGLKENV 1347 Query: 72 VLGGIIPVGTG 40 ++G +IP GTG Sbjct: 1348 IVGRLIPAGTG 1358
>RPOC2_PSEAK (Q3ZJ90) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 3462 Score = 112 bits (281), Expect = 5e-25 Identities = 64/129 (49%), Positives = 90/129 (69%), Gaps = 2/129 (1%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 +++ IQ VY+SQGV I ++HIEII++Q+TSKVR+ E S + L G+++ L ER Sbjct: 3315 IIDGIQYVYQSQGVNISDKHIEIIVKQMTSKVRILEPRNSGL-LRGDVVDLDWIERINLD 3373 Query: 240 L--DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVL 67 + + Y I+LGIT+ASL+ + FIS ASFQET +VL KA + R D+L+GLKENV+L Sbjct: 3374 ILTGKKAQYEPIVLGITKASLDRRGFISAASFQETIKVLTKATILQRRDYLRGLKENVIL 3433 Query: 66 GGIIPVGTG 40 G +I GTG Sbjct: 3434 GHLINSGTG 3442
>RPOC_LEGPL (Q5WZL8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1401 Score = 112 bits (280), Expect = 7e-25 Identities = 66/132 (50%), Positives = 93/132 (70%), Gaps = 4/132 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELI---GLLRAERA 250 +VN++Q VYR QGV+I+++HIE+I+RQ+ K ++ G S FL GE + +L+ Sbjct: 1226 IVNEVQDVYRLQGVKINDKHIEVIVRQMLRKRVITFAGDSK-FLVGEQVEESAMLQENDK 1284 Query: 249 GRALDESIYYRA-ILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 A + I ILLGIT+ASL T+SFIS ASFQET RVL +AA+ G++D L+GLKENV Sbjct: 1285 LLAEGKQIARGTPILLGITKASLATESFISAASFQETTRVLTEAAVSGKVDELRGLKENV 1344 Query: 72 VLGGIIPVGTGF 37 ++G +IP GTG+ Sbjct: 1345 MVGRLIPAGTGY 1356
>RPOC_LEGPH (Q5ZYP9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1401 Score = 112 bits (280), Expect = 7e-25 Identities = 66/132 (50%), Positives = 93/132 (70%), Gaps = 4/132 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELI---GLLRAERA 250 +VN++Q VYR QGV+I+++HIE+I+RQ+ K ++ G S FL GE + +L+ Sbjct: 1226 IVNEVQDVYRLQGVKINDKHIEVIVRQMLRKRVITFAGDSK-FLVGEQVEESAMLQENDK 1284 Query: 249 GRALDESIYYRA-ILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 A + I ILLGIT+ASL T+SFIS ASFQET RVL +AA+ G++D L+GLKENV Sbjct: 1285 LLAEGKQIARGTPILLGITKASLATESFISAASFQETTRVLTEAAVSGKVDELRGLKENV 1344 Query: 72 VLGGIIPVGTGF 37 ++G +IP GTG+ Sbjct: 1345 MVGRLIPAGTGY 1356
>RPOC_LEGPA (Q5X865) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1401 Score = 112 bits (280), Expect = 7e-25 Identities = 66/132 (50%), Positives = 93/132 (70%), Gaps = 4/132 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELI---GLLRAERA 250 +VN++Q VYR QGV+I+++HIE+I+RQ+ K ++ G S FL GE + +L+ Sbjct: 1226 IVNEVQDVYRLQGVKINDKHIEVIVRQMLRKRVITFAGDSK-FLVGEQVEESAMLQENDK 1284 Query: 249 GRALDESIYYRA-ILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 A + I ILLGIT+ASL T+SFIS ASFQET RVL +AA+ G++D L+GLKENV Sbjct: 1285 LLAEGKQIARGTPILLGITKASLATESFISAASFQETTRVLTEAAVSGKVDELRGLKENV 1344 Query: 72 VLGGIIPVGTGF 37 ++G +IP GTG+ Sbjct: 1345 MVGRLIPAGTGY 1356
>RPOBC_WOLSU (Q7MA56) Bifunctional DNA-directed RNA polymerase, beta and beta'| chain (EC 2.7.7.6) [Includes: DNA-directed RNA polymerase beta chain (Transcriptase beta chain) (RNA polymerase beta subunit); DNA-directed RNA polymerase beta' chain (Transcri Length = 2883 Score = 112 bits (280), Expect = 7e-25 Identities = 62/134 (46%), Positives = 90/134 (67%), Gaps = 4/134 (2%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRA----ER 253 +V+++Q+VYR QGV I ++HIEII+ Q+ +VR+ + G + F+ G+L+ ER Sbjct: 2738 IVSEVQQVYRRQGVNIADKHIEIIVSQMLRQVRIVDSGNTK-FIEGDLVSKRHFKEENER 2796 Query: 252 AGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 R E +LLGITRA++ + S IS ASFQET +VL +A++ +ID+L+ LKENV Sbjct: 2797 TIRLGGEPAIAEPVLLGITRAAIGSDSIISAASFQETTKVLTEASIAAKIDFLEDLKENV 2856 Query: 72 VLGGIIPVGTGFQK 31 VLG +IPVGTG K Sbjct: 2857 VLGRMIPVGTGIYK 2870
>ARGE_LEPBI (P13440) Putative acetylornithine deacetylase (EC 3.5.1.16)| (Acetylornithinase) Length = 277 Score = 112 bits (279), Expect = 9e-25 Identities = 58/134 (43%), Positives = 90/134 (67%), Gaps = 3/134 (2%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 LV+++Q+VYR QGV I+++HIE+++R + KV +++ G ++ ++ L E R Sbjct: 94 LVSEVQEVYRLQGVHINDKHIEVVVRSMLRKVIITDSGDTSFVNQQQVDKFLFDEENDRV 153 Query: 240 LDES---IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVV 70 E +LLG+T+ASLNT+S+ S ASFQET +VL AA++G+ D L GLKENV+ Sbjct: 154 EKEGGSPAQGTPVLLGLTKASLNTESYFSAASFQETTKVLTDAAIKGKTDNLMGLKENVI 213 Query: 69 LGGIIPVGTGFQKF 28 +G +IP GTG +K+ Sbjct: 214 IGHMIPAGTGMKKY 227
>RPOC_LACAC (Q5FM96) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1217 Score = 112 bits (279), Expect = 9e-25 Identities = 64/141 (45%), Positives = 91/141 (64%), Gaps = 4/141 (2%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGEL--IGLLRAERAG 247 ++ ++QK YR QGV I ++H+E++ RQ+ KVRV + G +++ LPGE+ IG R Sbjct: 1052 ILAEVQKAYRMQGVDIADKHVEVLTRQMLQKVRVLDPGETDI-LPGEVMDIGQFRDRNKE 1110 Query: 246 RALDESIYYRA--ILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 + I A I+L IT+A+L T SF+S ASFQET RVL A++RG+ D L GLKENV Sbjct: 1111 VIISGGIPATAQSIILSITKAALETNSFLSAASFQETTRVLTDASIRGKNDPLLGLKENV 1170 Query: 72 VLGGIIPVGTGFQKFVHRSPQ 10 ++G IIP GTG + P+ Sbjct: 1171 IIGKIIPAGTGMPIYRSMEPE 1191
>RPOC_DESPS (Q6AP77) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1349 Score = 111 bits (278), Expect = 1e-24 Identities = 64/134 (47%), Positives = 92/134 (68%), Gaps = 4/134 (2%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLR-AERAGR 244 LV++IQ+VYR QGV+I+++HIE+I+RQ+ +V ++ S F+ GE + + E R Sbjct: 1215 LVDEIQEVYRLQGVKINDKHIEVIVRQMLKRVHITRANDSK-FMIGENVEWWKFEEERDR 1273 Query: 243 ALDESIYYRA---ILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 L E A +LLG+T+ASL+T+SFIS ASFQET +VL AA+ GR+D L GLKENV Sbjct: 1274 LLAEGKKPGAAEPLLLGVTKASLSTESFISAASFQETTKVLTNAAMSGRVDELLGLKENV 1333 Query: 72 VLGGIIPVGTGFQK 31 ++G +I GTG + Sbjct: 1334 IMGRLISAGTGINR 1347
>RPOC_THET2 (Q72HM6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1513 Score = 111 bits (277), Expect = 2e-24 Identities = 58/131 (44%), Positives = 91/131 (69%), Gaps = 4/131 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 LV +IQKVYR+QGV++H++HIEI++RQ+ V V++ G S + L G+++ E Sbjct: 1337 LVEEIQKVYRAQGVKLHDKHIEIVVRQMMKYVEVTDPGDSRL-LEGQVLEKWDVEALNER 1395 Query: 240 L----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 L + ++ +L+G+T+++L+T+S++S ASFQ T VL +AA+ G+ D L GLKENV Sbjct: 1396 LIAEGKTPVAWKPLLMGVTKSALSTKSWLSAASFQNTTHVLTEAAIAGKKDELIGLKENV 1455 Query: 72 VLGGIIPVGTG 40 +LG +IP GTG Sbjct: 1456 ILGRLIPAGTG 1466
>RPOC_THET8 (Q8RQE8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1524 Score = 111 bits (277), Expect = 2e-24 Identities = 58/131 (44%), Positives = 91/131 (69%), Gaps = 4/131 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 LV +IQKVYR+QGV++H++HIEI++RQ+ V V++ G S + L G+++ E Sbjct: 1348 LVEEIQKVYRAQGVKLHDKHIEIVVRQMMKYVEVTDPGDSRL-LEGQVLEKWDVEALNER 1406 Query: 240 L----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 L + ++ +L+G+T+++L+T+S++S ASFQ T VL +AA+ G+ D L GLKENV Sbjct: 1407 LIAEGKTPVAWKPLLMGVTKSALSTKSWLSAASFQNTTHVLTEAAIAGKKDELIGLKENV 1466 Query: 72 VLGGIIPVGTG 40 +LG +IP GTG Sbjct: 1467 ILGRLIPAGTG 1477
>RPOC_THEAQ (Q9KWU6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1524 Score = 111 bits (277), Expect = 2e-24 Identities = 58/131 (44%), Positives = 92/131 (70%), Gaps = 4/131 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 241 LV++IQKVYR+QGV++H++HIEI++RQ+ V V++ G S + L G+++ E Sbjct: 1348 LVDEIQKVYRAQGVKLHDKHIEIVVRQMLKYVEVTDPGDSRL-LEGQVLEKWDVEALNER 1406 Query: 240 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 L + ++ +L+G+T+++L+T+S++S ASFQ T VL +AA+ G+ D L GLKENV Sbjct: 1407 LIAEGKVPVAWKPLLMGVTKSALSTKSWLSAASFQNTTHVLTEAAIAGKKDELIGLKENV 1466 Query: 72 VLGGIIPVGTG 40 +LG +IP GTG Sbjct: 1467 ILGRLIPAGTG 1477
>RPOC_CAMJR (Q5HVY8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1517 Score = 110 bits (276), Expect = 2e-24 Identities = 59/131 (45%), Positives = 90/131 (68%), Gaps = 4/131 (3%) Frame = -2 Query: 420 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRA----ER 253 L+++IQ+VYR QGV I ++HIE+I+ Q+ +V+V + G + F+ G+L+ + ER Sbjct: 1375 LISEIQQVYRGQGVVISDKHIEVIVSQMLRQVKVVDSGHTK-FIEGDLVSRRKFREENER 1433 Query: 252 AGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 73 R E +LLG+TRA++ + S IS ASFQET +VL +A++ G+ D+L+ LKENV Sbjct: 1434 IIRMGGEPAIAEPVLLGVTRAAIGSDSVISAASFQETTKVLTEASIAGKFDYLEDLKENV 1493 Query: 72 VLGGIIPVGTG 40 +LG +IPVGTG Sbjct: 1494 ILGRMIPVGTG 1504 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 85,424,568 Number of Sequences: 219361 Number of extensions: 1732056 Number of successful extensions: 5107 Number of sequences better than 10.0: 336 Number of HSP's better than 10.0 without gapping: 4722 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4851 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4528412720 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
