ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd22n18 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AB027572.1| Triticum aestivum chloroplast DNA, 21.1-kb fragment bearing RNA polymerase subunit (rpo) genes Length = 21245 Score = 1009 bits (509), Expect = 0.0 Identities = 543/559 (97%) Strand = Plus / Minus Query: 1 gttcttgtcttgtggggaacgatgcacaaatttttggaatccggtaccaacaggtataat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 18405 gttcttgtcttgtggggaacgatgcacaaatttttggaatccggtaccaacaggtataat 18346 Query: 61 nnnnnnnagaactacgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggc 120 ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 18345 cccccccagaactacgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggc 18286 Query: 121 agcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggt 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 18285 agcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggt 18226 Query: 181 attcagggaagcccttgttattcccaataagattgcccgataatagatcgattcatccaa 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 18225 attcagggaagcccttgttattcccaataagattgcccgataatagatcgattcatccaa 18166 Query: 241 agctcgccctgctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncatt 300 ||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 18165 agctcgccctgctcgttccgctcgcaatagtccgattaattccccaggcgaaaaaacatt 18106 Query: 301 agacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctctat 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 18105 agacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctctat 18046 Query: 361 atgtctattatggatctgtaccccttgggatcgataaaccttttggattttattaaccaa 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 18045 atgtctattatggatctgtaccccttgggatcgataaaccttttggattttattaaccaa 17986 Query: 421 agaaatacgactttgggctatggttagctcagctccaatcaagaatccccaagggacccc 480 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 17985 agagatacgactttgggctatggttagctcagctccaatcaagaatccccaagggacccc 17926 Query: 481 aagaattcttggtatacgctcattccaatcctcaattctcctttcgagattgggggataa 540 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 17925 aagaattcttggtatacgctcattccaatcctcaattctcctttcgagattcggggataa 17866 Query: 541 tgaatcaattgaacgcgct 559 ||||||||||||||||||| Sbjct: 17865 tgaatcaattgaacgcgct 17847
>dbj|AB042240.3| Triticum aestivum chloroplast DNA, complete genome Length = 134545 Score = 1009 bits (509), Expect = 0.0 Identities = 543/559 (97%) Strand = Plus / Minus Query: 1 gttcttgtcttgtggggaacgatgcacaaatttttggaatccggtaccaacaggtataat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 29759 gttcttgtcttgtggggaacgatgcacaaatttttggaatccggtaccaacaggtataat 29700 Query: 61 nnnnnnnagaactacgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggc 120 ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 29699 cccccccagaactacgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggc 29640 Query: 121 agcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggt 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 29639 agcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggt 29580 Query: 181 attcagggaagcccttgttattcccaataagattgcccgataatagatcgattcatccaa 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 29579 attcagggaagcccttgttattcccaataagattgcccgataatagatcgattcatccaa 29520 Query: 241 agctcgccctgctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncatt 300 ||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 29519 agctcgccctgctcgttccgctcgcaatagtccgattaattccccaggcgaaaaaacatt 29460 Query: 301 agacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctctat 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 29459 agacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctctat 29400 Query: 361 atgtctattatggatctgtaccccttgggatcgataaaccttttggattttattaaccaa 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 29399 atgtctattatggatctgtaccccttgggatcgataaaccttttggattttattaaccaa 29340 Query: 421 agaaatacgactttgggctatggttagctcagctccaatcaagaatccccaagggacccc 480 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 29339 agagatacgactttgggctatggttagctcagctccaatcaagaatccccaagggacccc 29280 Query: 481 aagaattcttggtatacgctcattccaatcctcaattctcctttcgagattgggggataa 540 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 29279 aagaattcttggtatacgctcattccaatcctcaattctcctttcgagattcggggataa 29220 Query: 541 tgaatcaattgaacgcgct 559 ||||||||||||||||||| Sbjct: 29219 tgaatcaattgaacgcgct 29201
>gb|AE009947.2| Saccharum hybrid cultivar SP-80-3280 chloroplast, complete genome Length = 141182 Score = 898 bits (453), Expect = 0.0 Identities = 529/559 (94%) Strand = Plus / Minus Query: 1 gttcttgtcttgtggggaacgatgcacaaatttttggaatccggtaccaacaggtataat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 93514 gttcttgtcttgtggggaacgatgcacaaatttttggaatccggtaccaacaggtataat 93455 Query: 61 nnnnnnnagaactacgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggc 120 ||||||||||||||||||| |||||||||||||||||| |||||||||||||| Sbjct: 93454 cccccccagaactacgttttctttcaggcctttcaaccaatcaatacgacctcgtagggc 93395 Query: 121 agcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggt 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 93394 agcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggt 93335 Query: 181 attcagggaagcccttgttattcccaataagattgcccgataatagatcgattcatccaa 240 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 93334 attcagggaagcccttgttattcccaataagattgcccgataatagatcgattcatctaa 93275 Query: 241 agctcgccctgctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncatt 300 ||| ||||||||||||||||||||||||||||| |||||||||||||| |||| Sbjct: 93274 agcccgccctgctcgttccgctcgcaatagtcctattaattccccaggtaaaaaaacatt 93215 Query: 301 agacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctctat 360 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 93214 agacattccatcttcggaaacccttacttttgatgttacttggcgtataataatctctat 93155 Query: 361 atgtctattatggatctgtaccccttgggatcgataaaccttttggattttattaaccaa 420 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 93154 atgtctattatggatctgtaccccttgggatcgataaaccttttggatcttattaaccaa 93095 Query: 421 agaaatacgactttgggctatggttagctcagctccaatcaagaatccccaagggacccc 480 ||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct: 93094 agagatacgactttgggctatggttagctcagctccaatcaagaatccccagggaacccc 93035 Query: 481 aagaattcttggtatacgctcattccaatcctcaattctcctttcgagattgggggataa 540 |||||||||||||||||| |||||||||||||||||||||||||||||||| || |||| Sbjct: 93034 aagaattcttggtatacgttcattccaatcctcaattctcctttcgagattcggcgatag 92975 Query: 541 tgaatcaattgaacgcgct 559 ||||||||||||||||||| Sbjct: 92974 tgaatcaattgaacgcgct 92956
>dbj|AP006714.1| Saccharum officinarum chloroplast DNA, complete genome Length = 141182 Score = 898 bits (453), Expect = 0.0 Identities = 529/559 (94%) Strand = Plus / Minus Query: 1 gttcttgtcttgtggggaacgatgcacaaatttttggaatccggtaccaacaggtataat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 31887 gttcttgtcttgtggggaacgatgcacaaatttttggaatccggtaccaacaggtataat 31828 Query: 61 nnnnnnnagaactacgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggc 120 ||||||||||||||||||| |||||||||||||||||| |||||||||||||| Sbjct: 31827 cccccccagaactacgttttctttcaggcctttcaaccaatcaatacgacctcgtagggc 31768 Query: 121 agcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggt 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 31767 agcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggt 31708 Query: 181 attcagggaagcccttgttattcccaataagattgcccgataatagatcgattcatccaa 240 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 31707 attcagggaagcccttgttattcccaataagattgcccgataatagatcgattcatctaa 31648 Query: 241 agctcgccctgctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncatt 300 ||| ||||||||||||||||||||||||||||| |||||||||||||| |||| Sbjct: 31647 agcccgccctgctcgttccgctcgcaatagtcctattaattccccaggtaaaaaaacatt 31588 Query: 301 agacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctctat 360 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 31587 agacattccatcttcggaaacccttacttttgatgttacttggcgtataataatctctat 31528 Query: 361 atgtctattatggatctgtaccccttgggatcgataaaccttttggattttattaaccaa 420 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 31527 atgtctattatggatctgtaccccttgggatcgataaaccttttggatcttattaaccaa 31468 Query: 421 agaaatacgactttgggctatggttagctcagctccaatcaagaatccccaagggacccc 480 ||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct: 31467 agagatacgactttgggctatggttagctcagctccaatcaagaatccccagggaacccc 31408 Query: 481 aagaattcttggtatacgctcattccaatcctcaattctcctttcgagattgggggataa 540 |||||||||||||||||| |||||||||||||||||||||||||||||||| || |||| Sbjct: 31407 aagaattcttggtatacgttcattccaatcctcaattctcctttcgagattcggcgatag 31348 Query: 541 tgaatcaattgaacgcgct 559 ||||||||||||||||||| Sbjct: 31347 tgaatcaattgaacgcgct 31329
>emb|X86563.2|ZMA86563 Zea mays complete chloroplast genome Length = 140384 Score = 890 bits (449), Expect = 0.0 Identities = 528/559 (94%) Strand = Plus / Minus Query: 1 gttcttgtcttgtggggaacgatgcacaaatttttggaatccggtaccaacaggtataat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 31413 gttcttgtcttgtggggaacgatgcacaaatttttggaatccggtaccaacaggtataat 31354 Query: 61 nnnnnnnagaactacgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggc 120 ||||||||||||||||||| ||||||||||||||||| |||||||||||||| Sbjct: 31353 cccccccagaactacgttttctttcagacctttcaaccaatcaatacgacctcgtagggc 31294 Query: 121 agcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggt 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 31293 agcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggt 31234 Query: 181 attcagggaagcccttgttattcccaataagattgcccgataatagatcgattcatccaa 240 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 31233 attcagggaagcccttgttattcccaataagattgcccgataatagatcgattcatctaa 31174 Query: 241 agctcgccctgctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncatt 300 ||| ||||||||||||||||||||||||||||| |||||||||||||| |||| Sbjct: 31173 agcccgccctgctcgttccgctcgcaatagtcctattaattccccaggtaaaaaaacatt 31114 Query: 301 agacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctctat 360 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 31113 agacattccatcttcggaaacccttacttttgatgttacttggcgtataataatctctat 31054 Query: 361 atgtctattatggatctgtaccccttgggatcgataaaccttttggattttattaaccaa 420 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 31053 atgtctattatggatctgtaccccttgggatcgataaaccttttggatcttattaaccaa 30994 Query: 421 agaaatacgactttgggctatggttagctcagctccaatcaagaatccccaagggacccc 480 ||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct: 30993 agagatacgactttgggctatggttagctcagctccaatcaagaatccccagggaacccc 30934 Query: 481 aagaattcttggtatacgctcattccaatcctcaattctcctttcgagattgggggataa 540 |||||||||||||||||| |||||||||||||||||||||||||||||||| || |||| Sbjct: 30933 aagaattcttggtatacgttcattccaatcctcaattctcctttcgagattcggcgatag 30874 Query: 541 tgaatcaattgaacgcgct 559 ||||||||||||||||||| Sbjct: 30873 tgaatcaattgaacgcgct 30855
>emb|X17318.1|CLZMRPB Zea mays chloroplast trnC gene, rpoB gene, rpoC1 gene, rpoC2 gene and rps2 gene for transfer RNA-Cys, RNA polymerase subunits beta, beta-1, beta-2 and ribosomal protein S2 respectively Length = 12503 Score = 890 bits (449), Expect = 0.0 Identities = 528/559 (94%) Strand = Plus / Minus Query: 1 gttcttgtcttgtggggaacgatgcacaaatttttggaatccggtaccaacaggtataat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11327 gttcttgtcttgtggggaacgatgcacaaatttttggaatccggtaccaacaggtataat 11268 Query: 61 nnnnnnnagaactacgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggc 120 ||||||||||||||||||| ||||||||||||||||| |||||||||||||| Sbjct: 11267 cccccccagaactacgttttctttcagacctttcaaccaatcaatacgacctcgtagggc 11208 Query: 121 agcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggt 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11207 agcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggt 11148 Query: 181 attcagggaagcccttgttattcccaataagattgcccgataatagatcgattcatccaa 240 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 11147 attcagggaagcccttgttattcccaataagattgcccgataatagatcgattcatctaa 11088 Query: 241 agctcgccctgctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncatt 300 ||| ||||||||||||||||||||||||||||| |||||||||||||| |||| Sbjct: 11087 agcccgccctgctcgttccgctcgcaatagtcctattaattccccaggtaaaaaaacatt 11028 Query: 301 agacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctctat 360 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 11027 agacattccatcttcggaaacccttacttttgatgttacttggcgtataataatctctat 10968 Query: 361 atgtctattatggatctgtaccccttgggatcgataaaccttttggattttattaaccaa 420 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 10967 atgtctattatggatctgtaccccttgggatcgataaaccttttggatcttattaaccaa 10908 Query: 421 agaaatacgactttgggctatggttagctcagctccaatcaagaatccccaagggacccc 480 ||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct: 10907 agagatacgactttgggctatggttagctcagctccaatcaagaatccccagggaacccc 10848 Query: 481 aagaattcttggtatacgctcattccaatcctcaattctcctttcgagattgggggataa 540 |||||||||||||||||| |||||||||||||||||||||||||||||||| || |||| Sbjct: 10847 aagaattcttggtatacgttcattccaatcctcaattctcctttcgagattcggcgatag 10788 Query: 541 tgaatcaattgaacgcgct 559 ||||||||||||||||||| Sbjct: 10787 tgaatcaattgaacgcgct 10769
>gb|AY928077.1| Zea mays cultivar B73 chloroplast, complete genome Length = 140454 Score = 890 bits (449), Expect = 0.0 Identities = 528/559 (94%) Strand = Plus / Minus Query: 1 gttcttgtcttgtggggaacgatgcacaaatttttggaatccggtaccaacaggtataat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 31412 gttcttgtcttgtggggaacgatgcacaaatttttggaatccggtaccaacaggtataat 31353 Query: 61 nnnnnnnagaactacgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggc 120 ||||||||||||||||||| ||||||||||||||||| |||||||||||||| Sbjct: 31352 cccccccagaactacgttttctttcagacctttcaaccaatcaatacgacctcgtagggc 31293 Query: 121 agcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggt 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 31292 agcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggt 31233 Query: 181 attcagggaagcccttgttattcccaataagattgcccgataatagatcgattcatccaa 240 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 31232 attcagggaagcccttgttattcccaataagattgcccgataatagatcgattcatctaa 31173 Query: 241 agctcgccctgctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncatt 300 ||| ||||||||||||||||||||||||||||| |||||||||||||| |||| Sbjct: 31172 agcccgccctgctcgttccgctcgcaatagtcctattaattccccaggtaaaaaaacatt 31113 Query: 301 agacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctctat 360 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 31112 agacattccatcttcggaaacccttacttttgatgttacttggcgtataataatctctat 31053 Query: 361 atgtctattatggatctgtaccccttgggatcgataaaccttttggattttattaaccaa 420 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 31052 atgtctattatggatctgtaccccttgggatcgataaaccttttggatcttattaaccaa 30993 Query: 421 agaaatacgactttgggctatggttagctcagctccaatcaagaatccccaagggacccc 480 ||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct: 30992 agagatacgactttgggctatggttagctcagctccaatcaagaatccccagggaacccc 30933 Query: 481 aagaattcttggtatacgctcattccaatcctcaattctcctttcgagattgggggataa 540 |||||||||||||||||| |||||||||||||||||||||||||||||||| || |||| Sbjct: 30932 aagaattcttggtatacgttcattccaatcctcaattctcctttcgagattcggcgatag 30873 Query: 541 tgaatcaattgaacgcgct 559 ||||||||||||||||||| Sbjct: 30872 tgaatcaattgaacgcgct 30854
>gb|AY522329.1| Oryza sativa (indica cultivar-group) isolate 93-11 chloroplast, complete genome Length = 134496 Score = 874 bits (441), Expect = 0.0 Identities = 526/559 (94%) Strand = Plus / Minus Query: 1 gttcttgtcttgtggggaacgatgcacaaatttttggaatccggtaccaacaggtataat 60 |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct: 29081 gttcttgtcttgtgggtaacggtgcacaaatttttggaatccggtaccaacaggtataat 29022 Query: 61 nnnnnnnagaactacgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggc 120 ||||||||||||||||||| |||||||||||||||||| |||||||||| ||| Sbjct: 29021 cccccccagaactacgttttctttcaggcctttcaaccaatcaatacgacctcgtaaggc 28962 Query: 121 agcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggt 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 28961 agcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggt 28902 Query: 181 attcagggaagcccttgttattcccaataagattgcccgataatagatcgattcatccaa 240 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 28901 attcagggaaacccttgttattcccaataagattgcccgataatagatcgattcatccaa 28842 Query: 241 agctcgccctgctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncatt 300 ||| ||||||||||| || |||||||||||||| |||||||||||||| |||| Sbjct: 28841 agcccgccctgctcgctctgctcgcaatagtccaattaattccccaggtgaaaaaacatt 28782 Query: 301 agacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctctat 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 28781 agacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctctat 28722 Query: 361 atgtctattatggatctgtaccccttgggatcgataaaccttttggattttattaaccaa 420 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 28721 atgtctattatggatctgtaccccttgggatcgataaaccttttggatcttattaaccaa 28662 Query: 421 agaaatacgactttgggctatggttagctcagctccaatcaagaatccccaagggacccc 480 ||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||| Sbjct: 28661 agagatacgactttgggctatggttaactcagctccaatcaagaatccccaaggaccccc 28602 Query: 481 aagaattcttggtatacgctcattccaatcctcaattctcctttcgagattgggggataa 540 ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 28601 aagaattcttggtatacgctcattccaatcctcaattctcctttcgagattcggcgatag 28542 Query: 541 tgaatcaattgaacgcgct 559 ||||||||||||||||||| Sbjct: 28541 tgaatcaattgaacgcgct 28523
>gb|AC122148.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAb0075K12, complete sequence Length = 125936 Score = 874 bits (441), Expect = 0.0 Identities = 526/559 (94%) Strand = Plus / Minus Query: 1 gttcttgtcttgtggggaacgatgcacaaatttttggaatccggtaccaacaggtataat 60 |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct: 27337 gttcttgtcttgtgggtaacggtgcacaaatttttggaatccggtaccaacaggtataat 27278 Query: 61 nnnnnnnagaactacgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggc 120 ||||||||||||||||||| |||||||||||||||||| |||||||||| ||| Sbjct: 27277 cccccccagaactacgttttctttcaggcctttcaaccaatcaatacgacctcgtaaggc 27218 Query: 121 agcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggt 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 27217 agcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggt 27158 Query: 181 attcagggaagcccttgttattcccaataagattgcccgataatagatcgattcatccaa 240 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 27157 attcagggaaacccttgttattcccaataagattgcccgataatagatcgattcatccaa 27098 Query: 241 agctcgccctgctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncatt 300 ||| ||||||||||| || |||||||||||||| |||||||||||||| |||| Sbjct: 27097 agcccgccctgctcgctctgctcgcaatagtccaattaattccccaggtgaaaaaacatt 27038 Query: 301 agacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctctat 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 27037 agacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctctat 26978 Query: 361 atgtctattatggatctgtaccccttgggatcgataaaccttttggattttattaaccaa 420 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 26977 atgtctattatggatctgtaccccttgggatcgataaaccttttggatcttattaaccaa 26918 Query: 421 agaaatacgactttgggctatggttagctcagctccaatcaagaatccccaagggacccc 480 ||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||| Sbjct: 26917 agagatacgactttgggctatggttaactcagctccaatcaagaatccccaaggaccccc 26858 Query: 481 aagaattcttggtatacgctcattccaatcctcaattctcctttcgagattgggggataa 540 ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 26857 aagaattcttggtatacgctcattccaatcctcaattctcctttcgagattcggcgatag 26798 Query: 541 tgaatcaattgaacgcgct 559 ||||||||||||||||||| Sbjct: 26797 tgaatcaattgaacgcgct 26779
>gb|AC092750.2| Oryza sativa (japonica cultivar-group) cultivar Nipponbare from chromosome 10, complete sequence Length = 134933 Score = 874 bits (441), Expect = 0.0 Identities = 526/559 (94%) Strand = Plus / Minus Query: 1 gttcttgtcttgtggggaacgatgcacaaatttttggaatccggtaccaacaggtataat 60 |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct: 102270 gttcttgtcttgtgggtaacggtgcacaaatttttggaatccggtaccaacaggtataat 102211 Query: 61 nnnnnnnagaactacgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggc 120 ||||||||||||||||||| |||||||||||||||||| |||||||||| ||| Sbjct: 102210 cccccccagaactacgttttctttcaggcctttcaaccaatcaatacgacctcgtaaggc 102151 Query: 121 agcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggt 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 102150 agcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggt 102091 Query: 181 attcagggaagcccttgttattcccaataagattgcccgataatagatcgattcatccaa 240 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 102090 attcagggaaacccttgttattcccaataagattgcccgataatagatcgattcatccaa 102031 Query: 241 agctcgccctgctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncatt 300 ||| ||||||||||| || |||||||||||||| |||||||||||||| |||| Sbjct: 102030 agcccgccctgctcgctctgctcgcaatagtccaattaattccccaggtgaaaaaacatt 101971 Query: 301 agacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctctat 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 101970 agacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctctat 101911 Query: 361 atgtctattatggatctgtaccccttgggatcgataaaccttttggattttattaaccaa 420 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 101910 atgtctattatggatctgtaccccttgggatcgataaaccttttggatcttattaaccaa 101851 Query: 421 agaaatacgactttgggctatggttagctcagctccaatcaagaatccccaagggacccc 480 ||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||| Sbjct: 101850 agagatacgactttgggctatggttaactcagctccaatcaagaatccccaaggaccccc 101791 Query: 481 aagaattcttggtatacgctcattccaatcctcaattctcctttcgagattgggggataa 540 ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 101790 aagaattcttggtatacgctcattccaatcctcaattctcctttcgagattcggcgatag 101731 Query: 541 tgaatcaattgaacgcgct 559 ||||||||||||||||||| Sbjct: 101730 tgaatcaattgaacgcgct 101712
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 874 bits (441), Expect = 0.0 Identities = 526/559 (94%) Strand = Plus / Minus Query: 1 gttcttgtcttgtggggaacgatgcacaaatttttggaatccggtaccaacaggtataat 60 |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct: 10320945 gttcttgtcttgtgggtaacggtgcacaaatttttggaatccggtaccaacaggtataat 10320886 Query: 61 nnnnnnnagaactacgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggc 120 ||||||||||||||||||| |||||||||||||||||| |||||||||| ||| Sbjct: 10320885 cccccccagaactacgttttctttcaggcctttcaaccaatcaatacgacctcgtaaggc 10320826 Query: 121 agcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggt 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10320825 agcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggt 10320766 Query: 181 attcagggaagcccttgttattcccaataagattgcccgataatagatcgattcatccaa 240 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10320765 attcagggaaacccttgttattcccaataagattgcccgataatagatcgattcatccaa 10320706 Query: 241 agctcgccctgctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncatt 300 ||| ||||||||||| || |||||||||||||| |||||||||||||| |||| Sbjct: 10320705 agcccgccctgctcgctctgctcgcaatagtccaattaattccccaggtgaaaaaacatt 10320646 Query: 301 agacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctctat 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10320645 agacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctctat 10320586 Query: 361 atgtctattatggatctgtaccccttgggatcgataaaccttttggattttattaaccaa 420 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 10320585 atgtctattatggatctgtaccccttgggatcgataaaccttttggatcttattaaccaa 10320526 Query: 421 agaaatacgactttgggctatggttagctcagctccaatcaagaatccccaagggacccc 480 ||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||| Sbjct: 10320525 agagatacgactttgggctatggttaactcagctccaatcaagaatccccaaggaccccc 10320466 Query: 481 aagaattcttggtatacgctcattccaatcctcaattctcctttcgagattgggggataa 540 ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 10320465 aagaattcttggtatacgctcattccaatcctcaattctcctttcgagattcggcgatag 10320406 Query: 541 tgaatcaattgaacgcgct 559 ||||||||||||||||||| Sbjct: 10320405 tgaatcaattgaacgcgct 10320387 Score = 50.1 bits (25), Expect = 0.008 Identities = 34/37 (91%) Strand = Plus / Plus Query: 1 gttcttgtcttgtggggaacgatgcacaaatttttgg 37 |||||||| ||||||| |||| ||||||||||||||| Sbjct: 19965478 gttcttgttttgtgggtaacggtgcacaaatttttgg 19965514 Score = 50.1 bits (25), Expect = 0.008 Identities = 37/41 (90%) Strand = Plus / Plus Query: 519 tcctttcgagattgggggataatgaatcaattgaacgcgct 559 ||||||||||||| | |||| ||||||||||||||||||| Sbjct: 11556804 tcctttcgagattcagcgatagtgaatcaattgaacgcgct 11556844
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 874 bits (441), Expect = 0.0 Identities = 526/559 (94%) Strand = Plus / Plus Query: 1 gttcttgtcttgtggggaacgatgcacaaatttttggaatccggtaccaacaggtataat 60 |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct: 33549177 gttcttgtcttgtgggtaacggtgcacaaatttttggaatccggtaccaacaggtataat 33549236 Query: 61 nnnnnnnagaactacgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggc 120 ||||||||||||||||||| |||||||||||||||||| |||||||||| ||| Sbjct: 33549237 cccccccagaactacgttttctttcaggcctttcaaccaatcaatacgacctcgtaaggc 33549296 Query: 121 agcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggt 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 33549297 agcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggt 33549356 Query: 181 attcagggaagcccttgttattcccaataagattgcccgataatagatcgattcatccaa 240 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 33549357 attcagggaaacccttgttattcccaataagattgcccgataatagatcgattcatccaa 33549416 Query: 241 agctcgccctgctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncatt 300 ||| ||||||||||| || |||||||||||||| |||||||||||||| |||| Sbjct: 33549417 agcccgccctgctcgctctgctcgcaatagtccaattaattccccaggtgaaaaaacatt 33549476 Query: 301 agacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctctat 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 33549477 agacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctctat 33549536 Query: 361 atgtctattatggatctgtaccccttgggatcgataaaccttttggattttattaaccaa 420 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 33549537 atgtctattatggatctgtaccccttgggatcgataaaccttttggatcttattaaccaa 33549596 Query: 421 agaaatacgactttgggctatggttagctcagctccaatcaagaatccccaagggacccc 480 ||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||| Sbjct: 33549597 agagatacgactttgggctatggttaactcagctccaatcaagaatccccaaggaccccc 33549656 Query: 481 aagaattcttggtatacgctcattccaatcctcaattctcctttcgagattgggggataa 540 ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 33549657 aagaattcttggtatacgctcattccaatcctcaattctcctttcgagattcggcgatag 33549716 Query: 541 tgaatcaattgaacgcgct 559 ||||||||||||||||||| Sbjct: 33549717 tgaatcaattgaacgcgct 33549735
>dbj|AP003280.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0557A01 Length = 147201 Score = 874 bits (441), Expect = 0.0 Identities = 526/559 (94%) Strand = Plus / Plus Query: 1 gttcttgtcttgtggggaacgatgcacaaatttttggaatccggtaccaacaggtataat 60 |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct: 94374 gttcttgtcttgtgggtaacggtgcacaaatttttggaatccggtaccaacaggtataat 94433 Query: 61 nnnnnnnagaactacgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggc 120 ||||||||||||||||||| |||||||||||||||||| |||||||||| ||| Sbjct: 94434 cccccccagaactacgttttctttcaggcctttcaaccaatcaatacgacctcgtaaggc 94493 Query: 121 agcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggt 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 94494 agcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggt 94553 Query: 181 attcagggaagcccttgttattcccaataagattgcccgataatagatcgattcatccaa 240 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 94554 attcagggaaacccttgttattcccaataagattgcccgataatagatcgattcatccaa 94613 Query: 241 agctcgccctgctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncatt 300 ||| ||||||||||| || |||||||||||||| |||||||||||||| |||| Sbjct: 94614 agcccgccctgctcgctctgctcgcaatagtccaattaattccccaggtgaaaaaacatt 94673 Query: 301 agacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctctat 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 94674 agacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctctat 94733 Query: 361 atgtctattatggatctgtaccccttgggatcgataaaccttttggattttattaaccaa 420 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 94734 atgtctattatggatctgtaccccttgggatcgataaaccttttggatcttattaaccaa 94793 Query: 421 agaaatacgactttgggctatggttagctcagctccaatcaagaatccccaagggacccc 480 ||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||| Sbjct: 94794 agagatacgactttgggctatggttaactcagctccaatcaagaatccccaaggaccccc 94853 Query: 481 aagaattcttggtatacgctcattccaatcctcaattctcctttcgagattgggggataa 540 ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 94854 aagaattcttggtatacgctcattccaatcctcaattctcctttcgagattcggcgatag 94913 Query: 541 tgaatcaattgaacgcgct 559 ||||||||||||||||||| Sbjct: 94914 tgaatcaattgaacgcgct 94932
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 874 bits (441), Expect = 0.0 Identities = 526/559 (94%) Strand = Plus / Minus Query: 1 gttcttgtcttgtggggaacgatgcacaaatttttggaatccggtaccaacaggtataat 60 |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct: 10326984 gttcttgtcttgtgggtaacggtgcacaaatttttggaatccggtaccaacaggtataat 10326925 Query: 61 nnnnnnnagaactacgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggc 120 ||||||||||||||||||| |||||||||||||||||| |||||||||| ||| Sbjct: 10326924 cccccccagaactacgttttctttcaggcctttcaaccaatcaatacgacctcgtaaggc 10326865 Query: 121 agcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggt 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10326864 agcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggt 10326805 Query: 181 attcagggaagcccttgttattcccaataagattgcccgataatagatcgattcatccaa 240 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10326804 attcagggaaacccttgttattcccaataagattgcccgataatagatcgattcatccaa 10326745 Query: 241 agctcgccctgctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncatt 300 ||| ||||||||||| || |||||||||||||| |||||||||||||| |||| Sbjct: 10326744 agcccgccctgctcgctctgctcgcaatagtccaattaattccccaggtgaaaaaacatt 10326685 Query: 301 agacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctctat 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10326684 agacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctctat 10326625 Query: 361 atgtctattatggatctgtaccccttgggatcgataaaccttttggattttattaaccaa 420 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 10326624 atgtctattatggatctgtaccccttgggatcgataaaccttttggatcttattaaccaa 10326565 Query: 421 agaaatacgactttgggctatggttagctcagctccaatcaagaatccccaagggacccc 480 ||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||| Sbjct: 10326564 agagatacgactttgggctatggttaactcagctccaatcaagaatccccaaggaccccc 10326505 Query: 481 aagaattcttggtatacgctcattccaatcctcaattctcctttcgagattgggggataa 540 ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 10326504 aagaattcttggtatacgctcattccaatcctcaattctcctttcgagattcggcgatag 10326445 Query: 541 tgaatcaattgaacgcgct 559 ||||||||||||||||||| Sbjct: 10326444 tgaatcaattgaacgcgct 10326426 Score = 50.1 bits (25), Expect = 0.008 Identities = 34/37 (91%) Strand = Plus / Plus Query: 1 gttcttgtcttgtggggaacgatgcacaaatttttgg 37 |||||||| ||||||| |||| ||||||||||||||| Sbjct: 19976754 gttcttgttttgtgggtaacggtgcacaaatttttgg 19976790 Score = 50.1 bits (25), Expect = 0.008 Identities = 37/41 (90%) Strand = Plus / Plus Query: 519 tcctttcgagattgggggataatgaatcaattgaacgcgct 559 ||||||||||||| | |||| ||||||||||||||||||| Sbjct: 11563244 tcctttcgagattcagcgatagtgaatcaattgaacgcgct 11563284
>gb|AY522330.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare chloroplast, complete genome Length = 134551 Score = 866 bits (437), Expect = 0.0 Identities = 525/559 (93%) Strand = Plus / Minus Query: 1 gttcttgtcttgtggggaacgatgcacaaatttttggaatccggtaccaacaggtataat 60 |||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct: 29123 gttcttgttttgtgggtaacggtgcacaaatttttggaatccggtaccaacaggtataat 29064 Query: 61 nnnnnnnagaactacgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggc 120 ||||||||||||||||||| |||||||||||||||||| |||||||||| ||| Sbjct: 29063 cccccccagaactacgttttctttcaggcctttcaaccaatcaatacgacctcgtaaggc 29004 Query: 121 agcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggt 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 29003 agcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggt 28944 Query: 181 attcagggaagcccttgttattcccaataagattgcccgataatagatcgattcatccaa 240 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 28943 attcagggaaacccttgttattcccaataagattgcccgataatagatcgattcatccaa 28884 Query: 241 agctcgccctgctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncatt 300 ||| ||||||||||| || |||||||||||||| |||||||||||||| |||| Sbjct: 28883 agcccgccctgctcgctctgctcgcaatagtccaattaattccccaggtgaaaaaacatt 28824 Query: 301 agacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctctat 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 28823 agacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctctat 28764 Query: 361 atgtctattatggatctgtaccccttgggatcgataaaccttttggattttattaaccaa 420 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 28763 atgtctattatggatctgtaccccttgggatcgataaaccttttggatcttattaaccaa 28704 Query: 421 agaaatacgactttgggctatggttagctcagctccaatcaagaatccccaagggacccc 480 ||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||| Sbjct: 28703 agagatacgactttgggctatggttaactcagctccaatcaagaatccccaaggaccccc 28644 Query: 481 aagaattcttggtatacgctcattccaatcctcaattctcctttcgagattgggggataa 540 ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 28643 aagaattcttggtatacgctcattccaatcctcaattctcctttcgagattcggcgatag 28584 Query: 541 tgaatcaattgaacgcgct 559 ||||||||||||||||||| Sbjct: 28583 tgaatcaattgaacgcgct 28565
>gb|AY522331.1| Oryza sativa (japonica cultivar-group) isolate PA64S chloroplast, complete genome Length = 134551 Score = 866 bits (437), Expect = 0.0 Identities = 525/559 (93%) Strand = Plus / Minus Query: 1 gttcttgtcttgtggggaacgatgcacaaatttttggaatccggtaccaacaggtataat 60 |||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct: 29123 gttcttgttttgtgggtaacggtgcacaaatttttggaatccggtaccaacaggtataat 29064 Query: 61 nnnnnnnagaactacgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggc 120 ||||||||||||||||||| |||||||||||||||||| |||||||||| ||| Sbjct: 29063 cccccccagaactacgttttctttcaggcctttcaaccaatcaatacgacctcgtaaggc 29004 Query: 121 agcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggt 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 29003 agcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggt 28944 Query: 181 attcagggaagcccttgttattcccaataagattgcccgataatagatcgattcatccaa 240 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 28943 attcagggaaacccttgttattcccaataagattgcccgataatagatcgattcatccaa 28884 Query: 241 agctcgccctgctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncatt 300 ||| ||||||||||| || |||||||||||||| |||||||||||||| |||| Sbjct: 28883 agcccgccctgctcgctctgctcgcaatagtccaattaattccccaggtgaaaaaacatt 28824 Query: 301 agacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctctat 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 28823 agacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctctat 28764 Query: 361 atgtctattatggatctgtaccccttgggatcgataaaccttttggattttattaaccaa 420 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 28763 atgtctattatggatctgtaccccttgggatcgataaaccttttggatcttattaaccaa 28704 Query: 421 agaaatacgactttgggctatggttagctcagctccaatcaagaatccccaagggacccc 480 ||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||| Sbjct: 28703 agagatacgactttgggctatggttaactcagctccaatcaagaatccccaaggaccccc 28644 Query: 481 aagaattcttggtatacgctcattccaatcctcaattctcctttcgagattgggggataa 540 ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 28643 aagaattcttggtatacgctcattccaatcctcaattctcctttcgagattcggcgatag 28584 Query: 541 tgaatcaattgaacgcgct 559 ||||||||||||||||||| Sbjct: 28583 tgaatcaattgaacgcgct 28565
>emb|X15901.1|CHOSXX Oryza sativa (japonica cultivar-group) chloroplast genome Length = 134525 Score = 866 bits (437), Expect = 0.0 Identities = 525/559 (93%) Strand = Plus / Minus Query: 1 gttcttgtcttgtggggaacgatgcacaaatttttggaatccggtaccaacaggtataat 60 |||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct: 29121 gttcttgttttgtgggtaacggtgcacaaatttttggaatccggtaccaacaggtataat 29062 Query: 61 nnnnnnnagaactacgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggc 120 ||||||||||||||||||| |||||||||||||||||| |||||||||| ||| Sbjct: 29061 cccccccagaactacgttttctttcaggcctttcaaccaatcaatacgacctcgtaaggc 29002 Query: 121 agcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggt 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 29001 agcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggt 28942 Query: 181 attcagggaagcccttgttattcccaataagattgcccgataatagatcgattcatccaa 240 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 28941 attcagggaaacccttgttattcccaataagattgcccgataatagatcgattcatccaa 28882 Query: 241 agctcgccctgctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncatt 300 ||| ||||||||||| || |||||||||||||| |||||||||||||| |||| Sbjct: 28881 agcccgccctgctcgctctgctcgcaatagtccaattaattccccaggtgaaaaaacatt 28822 Query: 301 agacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctctat 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 28821 agacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctctat 28762 Query: 361 atgtctattatggatctgtaccccttgggatcgataaaccttttggattttattaaccaa 420 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 28761 atgtctattatggatctgtaccccttgggatcgataaaccttttggatcttattaaccaa 28702 Query: 421 agaaatacgactttgggctatggttagctcagctccaatcaagaatccccaagggacccc 480 ||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||| Sbjct: 28701 agagatacgactttgggctatggttaactcagctccaatcaagaatccccaaggaccccc 28642 Query: 481 aagaattcttggtatacgctcattccaatcctcaattctcctttcgagattgggggataa 540 ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 28641 aagaattcttggtatacgctcattccaatcctcaattctcctttcgagattcggcgatag 28582 Query: 541 tgaatcaattgaacgcgct 559 ||||||||||||||||||| Sbjct: 28581 tgaatcaattgaacgcgct 28563
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 866 bits (437), Expect = 0.0 Identities = 525/559 (93%) Strand = Plus / Minus Query: 1 gttcttgtcttgtggggaacgatgcacaaatttttggaatccggtaccaacaggtataat 60 |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct: 14369460 gttcttgtcttgtgggtaacggtgcacaaatttttggaatccggtaccaacaggtataat 14369401 Query: 61 nnnnnnnagaactacgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggc 120 ||||||||||||||||||| |||||||||||||||||| |||||||||| ||| Sbjct: 14369400 cccccccagaactacgttttctttcaggcctttcaaccaatcaatacgacctcgtaaggc 14369341 Query: 121 agcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggt 180 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 14369340 agcttttgctaaaactcgatcagtttcttgaaaacttgcttcagatatgaaactttgggt 14369281 Query: 181 attcagggaagcccttgttattcccaataagattgcccgataatagatcgattcatccaa 240 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 14369280 attcagggaaacccttgttattcccaataagattgcccgataatagatcgattcatccaa 14369221 Query: 241 agctcgccctgctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncatt 300 ||| ||||||||||| || |||||||||||||| |||||||||||||| |||| Sbjct: 14369220 agcccgccctgctcgctctgctcgcaatagtccaattaattccccaggtgaaaaaacatt 14369161 Query: 301 agacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctctat 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 14369160 agacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctctat 14369101 Query: 361 atgtctattatggatctgtaccccttgggatcgataaaccttttggattttattaaccaa 420 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 14369100 atgtctattatggatctgtaccccttgggatcgataaaccttttggatcttattaaccaa 14369041 Query: 421 agaaatacgactttgggctatggttagctcagctccaatcaagaatccccaagggacccc 480 ||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||| Sbjct: 14369040 agaggtacgactttgggctatggttaactcagctccaatcaagaatccccaaggaccccc 14368981 Query: 481 aagaattcttggtatacgctcattccaatcctcaattctcctttcgagattgggggataa 540 ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct: 14368980 aagaattcttggtatacgctcattccaatcctcaattctcctttcgagattcggcgataa 14368921 Query: 541 tgaatcaattgaacgcgct 559 ||||||||||||||||||| Sbjct: 14368920 tgaatcaattgaacgcgct 14368902 Score = 95.6 bits (48), Expect = 1e-16 Identities = 57/60 (95%) Strand = Plus / Plus Query: 500 tcattccaatcctcaattctcctttcgagattgggggataatgaatcaattgaacgcgct 559 |||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||| Sbjct: 14358389 tcattccaatcctcaattctcctttcgagattcggcgatagtgaatcaattgaacgcgct 14358448 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 23 tgcacaaatttttggaatccggtaccaacaggtataat 60 ||||||||||||| ||||| ||||| |||||||||||| Sbjct: 13401571 tgcacaaatttttagaatctggtactaacaggtataat 13401608 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 401 ttttggattttattaaccaa 420 |||||||||||||||||||| Sbjct: 474301 ttttggattttattaaccaa 474320
>dbj|AP005408.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0022A24 Length = 148347 Score = 866 bits (437), Expect = 0.0 Identities = 525/559 (93%) Strand = Plus / Minus Query: 1 gttcttgtcttgtggggaacgatgcacaaatttttggaatccggtaccaacaggtataat 60 |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct: 91382 gttcttgtcttgtgggtaacggtgcacaaatttttggaatccggtaccaacaggtataat 91323 Query: 61 nnnnnnnagaactacgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggc 120 ||||||||||||||||||| |||||||||||||||||| |||||||||| ||| Sbjct: 91322 cccccccagaactacgttttctttcaggcctttcaaccaatcaatacgacctcgtaaggc 91263 Query: 121 agcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggt 180 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 91262 agcttttgctaaaactcgatcagtttcttgaaaacttgcttcagatatgaaactttgggt 91203 Query: 181 attcagggaagcccttgttattcccaataagattgcccgataatagatcgattcatccaa 240 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 91202 attcagggaaacccttgttattcccaataagattgcccgataatagatcgattcatccaa 91143 Query: 241 agctcgccctgctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncatt 300 ||| ||||||||||| || |||||||||||||| |||||||||||||| |||| Sbjct: 91142 agcccgccctgctcgctctgctcgcaatagtccaattaattccccaggtgaaaaaacatt 91083 Query: 301 agacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctctat 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 91082 agacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctctat 91023 Query: 361 atgtctattatggatctgtaccccttgggatcgataaaccttttggattttattaaccaa 420 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 91022 atgtctattatggatctgtaccccttgggatcgataaaccttttggatcttattaaccaa 90963 Query: 421 agaaatacgactttgggctatggttagctcagctccaatcaagaatccccaagggacccc 480 ||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||| Sbjct: 90962 agaggtacgactttgggctatggttaactcagctccaatcaagaatccccaaggaccccc 90903 Query: 481 aagaattcttggtatacgctcattccaatcctcaattctcctttcgagattgggggataa 540 ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct: 90902 aagaattcttggtatacgctcattccaatcctcaattctcctttcgagattcggcgataa 90843 Query: 541 tgaatcaattgaacgcgct 559 ||||||||||||||||||| Sbjct: 90842 tgaatcaattgaacgcgct 90824 Score = 95.6 bits (48), Expect = 1e-16 Identities = 57/60 (95%) Strand = Plus / Plus Query: 500 tcattccaatcctcaattctcctttcgagattgggggataatgaatcaattgaacgcgct 559 |||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||| Sbjct: 80311 tcattccaatcctcaattctcctttcgagattcggcgatagtgaatcaattgaacgcgct 80370
>dbj|AP006728.1| Oryza nivara chloroplast DNA, complete genome Length = 134494 Score = 866 bits (437), Expect = 0.0 Identities = 525/559 (93%) Strand = Plus / Minus Query: 1 gttcttgtcttgtggggaacgatgcacaaatttttggaatccggtaccaacaggtataat 60 |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct: 29055 gttcttgtcttgtgggtaacggtgcacaaatttttggaatccggtaccaacaggtataat 28996 Query: 61 nnnnnnnagaactacgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggc 120 ||||||||||||||||||| |||||||||||||||||| ||||| |||| ||| Sbjct: 28995 cccccccagaactacgttttctttcaggcctttcaaccaatcaatacgaccacgtaaggc 28936 Query: 121 agcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggt 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 28935 agcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggt 28876 Query: 181 attcagggaagcccttgttattcccaataagattgcccgataatagatcgattcatccaa 240 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 28875 attcagggaaacccttgttattcccaataagattgcccgataatagatcgattcatccaa 28816 Query: 241 agctcgccctgctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncatt 300 ||| ||||||||||| || |||||||||||||| |||||||||||||| |||| Sbjct: 28815 agcccgccctgctcgctctgctcgcaatagtccaattaattccccaggtgaaaaaacatt 28756 Query: 301 agacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctctat 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 28755 agacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctctat 28696 Query: 361 atgtctattatggatctgtaccccttgggatcgataaaccttttggattttattaaccaa 420 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 28695 atgtctattatggatctgtaccccttgggatcgataaaccttttggatcttattaaccaa 28636 Query: 421 agaaatacgactttgggctatggttagctcagctccaatcaagaatccccaagggacccc 480 ||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||| Sbjct: 28635 agagatacgactttgggctatggttaactcagctccaatcaagaatccccaaggaccccc 28576 Query: 481 aagaattcttggtatacgctcattccaatcctcaattctcctttcgagattgggggataa 540 ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 28575 aagaattcttggtatacgctcattccaatcctcaattctcctttcgagattcggcgatag 28516 Query: 541 tgaatcaattgaacgcgct 559 ||||||||||||||||||| Sbjct: 28515 tgaatcaattgaacgcgct 28497
>emb|BX569685.1|OSJN00291 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0061C08, complete sequence Length = 145980 Score = 858 bits (433), Expect = 0.0 Identities = 524/559 (93%) Strand = Plus / Minus Query: 1 gttcttgtcttgtggggaacgatgcacaaatttttggaatccggtaccaacaggtataat 60 |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct: 112494 gttcttgtcttgtgggtaacggtgcacaaatttttggaatccggtaccaacaggtataat 112435 Query: 61 nnnnnnnagaactacgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggc 120 ||||||||||||||||||| |||||||||||||||||| |||||||||| ||| Sbjct: 112434 cccccccagaactacgttttctttcaggcctttcaaccaatcaatacgacctcgtaaggc 112375 Query: 121 agcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggt 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 112374 agcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggt 112315 Query: 181 attcagggaagcccttgttattcccaataagattgcccgataatagatcgattcatccaa 240 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 112314 attcagggaaacccttgttattcccaataagattgcccgataatagatcgattcatccaa 112255 Query: 241 agctcgccctgctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncatt 300 ||| ||||||||||| || |||||||||||||| |||||||||||||| |||| Sbjct: 112254 agcccgccctgctcgctctgctcgcaatagtccaattaattccccaggtgaaaaaacatt 112195 Query: 301 agacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctctat 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 112194 agacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctctat 112135 Query: 361 atgtctattatggatctgtaccccttgggatcgataaaccttttggattttattaaccaa 420 ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| Sbjct: 112134 atgtctattatggatctgtaccccttgggattgataaaccttttggatcttattaaccag 112075 Query: 421 agaaatacgactttgggctatggttagctcagctccaatcaagaatccccaagggacccc 480 ||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||| Sbjct: 112074 agagatacgactttgggctatggttaactcagctccaatcaagaatccccaaggaccccc 112015 Query: 481 aagaattcttggtatacgctcattccaatcctcaattctcctttcgagattgggggataa 540 ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 112014 aagaattcttggtatacgctcattccaatcctcaattctcctttcgagattcggcgatag 111955 Query: 541 tgaatcaattgaacgcgct 559 ||||||||||||||||||| Sbjct: 111954 tgaatcaattgaacgcgct 111936
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 858 bits (433), Expect = 0.0 Identities = 524/559 (93%) Strand = Plus / Minus Query: 1 gttcttgtcttgtggggaacgatgcacaaatttttggaatccggtaccaacaggtataat 60 |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct: 9258373 gttcttgtcttgtgggtaacggtgcacaaatttttggaatccggtaccaacaggtataat 9258314 Query: 61 nnnnnnnagaactacgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggc 120 ||||||||||||||||||| |||||||||||||||||| |||||||||| ||| Sbjct: 9258313 cccccccagaactacgttttctttcaggcctttcaaccaatcaatacgacctcgtaaggc 9258254 Query: 121 agcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggt 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9258253 agcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggt 9258194 Query: 181 attcagggaagcccttgttattcccaataagattgcccgataatagatcgattcatccaa 240 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9258193 attcagggaaacccttgttattcccaataagattgcccgataatagatcgattcatccaa 9258134 Query: 241 agctcgccctgctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncatt 300 ||| ||||||||||| || |||||||||||||| |||||||||||||| |||| Sbjct: 9258133 agcccgccctgctcgctctgctcgcaatagtccaattaattccccaggtgaaaaaacatt 9258074 Query: 301 agacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctctat 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9258073 agacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctctat 9258014 Query: 361 atgtctattatggatctgtaccccttgggatcgataaaccttttggattttattaaccaa 420 ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| Sbjct: 9258013 atgtctattatggatctgtaccccttgggattgataaaccttttggatcttattaaccag 9257954 Query: 421 agaaatacgactttgggctatggttagctcagctccaatcaagaatccccaagggacccc 480 ||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||| Sbjct: 9257953 agagatacgactttgggctatggttaactcagctccaatcaagaatccccaaggaccccc 9257894 Query: 481 aagaattcttggtatacgctcattccaatcctcaattctcctttcgagattgggggataa 540 ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 9257893 aagaattcttggtatacgctcattccaatcctcaattctcctttcgagattcggcgatag 9257834 Query: 541 tgaatcaattgaacgcgct 559 ||||||||||||||||||| Sbjct: 9257833 tgaatcaattgaacgcgct 9257815 Score = 858 bits (433), Expect = 0.0 Identities = 524/559 (93%) Strand = Plus / Minus Query: 1 gttcttgtcttgtggggaacgatgcacaaatttttggaatccggtaccaacaggtataat 60 |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct: 9154468 gttcttgtcttgtgggtaacggtgcacaaatttttggaatccggtaccaacaggtataat 9154409 Query: 61 nnnnnnnagaactacgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggc 120 ||||||||||||||||||| |||||||||||||||||| |||||||||| ||| Sbjct: 9154408 cccccccagaactacgttttctttcaggcctttcaaccaatcaatacgacctcgtaaggc 9154349 Query: 121 agcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggt 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9154348 agcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggt 9154289 Query: 181 attcagggaagcccttgttattcccaataagattgcccgataatagatcgattcatccaa 240 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9154288 attcagggaaacccttgttattcccaataagattgcccgataatagatcgattcatccaa 9154229 Query: 241 agctcgccctgctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncatt 300 ||| ||||||||||| || |||||||||||||| |||||||||||||| |||| Sbjct: 9154228 agcccgccctgctcgctctgctcgcaatagtccaattaattccccaggtgaaaaaacatt 9154169 Query: 301 agacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctctat 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9154168 agacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctctat 9154109 Query: 361 atgtctattatggatctgtaccccttgggatcgataaaccttttggattttattaaccaa 420 ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| Sbjct: 9154108 atgtctattatggatctgtaccccttgggattgataaaccttttggatcttattaaccag 9154049 Query: 421 agaaatacgactttgggctatggttagctcagctccaatcaagaatccccaagggacccc 480 ||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||| Sbjct: 9154048 agagatacgactttgggctatggttaactcagctccaatcaagaatccccaaggaccccc 9153989 Query: 481 aagaattcttggtatacgctcattccaatcctcaattctcctttcgagattgggggataa 540 ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 9153988 aagaattcttggtatacgctcattccaatcctcaattctcctttcgagattcggcgatag 9153929 Query: 541 tgaatcaattgaacgcgct 559 ||||||||||||||||||| Sbjct: 9153928 tgaatcaattgaacgcgct 9153910 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 401 ttttggattttattaaccaa 420 |||||||||||||||||||| Sbjct: 29603158 ttttggattttattaaccaa 29603177
>gb|AC136521.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone OSJNBa0034M22, complete sequence Length = 149435 Score = 848 bits (428), Expect = 0.0 Identities = 524/559 (93%), Gaps = 1/559 (0%) Strand = Plus / Minus Query: 1 gttcttgtcttgtggggaacgatgcacaaatttttggaatccggtaccaacaggtataat 60 ||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||| Sbjct: 119889 gttcttgtcttgtaggtaacggtgcacaaatttttggaatccggtaccaacaggtataat 119830 Query: 61 nnnnnnnagaactacgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggc 120 ||||||||||||||||||| |||||||||||||||||| |||||||||| ||| Sbjct: 119829 cccccc-agaactacgttttctttcaggcctttcaaccaatcaatacgacctcgtaaggc 119771 Query: 121 agcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggt 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 119770 agcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggt 119711 Query: 181 attcagggaagcccttgttattcccaataagattgcccgataatagatcgattcatccaa 240 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 119710 attcagggaaacccttgttattcccaataagattgcccgataatagatcgattcatccaa 119651 Query: 241 agctcgccctgctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncatt 300 ||| ||||||||||| || |||||||||||||| |||||||||||||| |||| Sbjct: 119650 agcccgccctgctcgctctgctcgcaatagtccaattaattccccaggtgaaaaaacatt 119591 Query: 301 agacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctctat 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 119590 agacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctctat 119531 Query: 361 atgtctattatggatctgtaccccttgggatcgataaaccttttggattttattaaccaa 420 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 119530 atgtctattatggatctgtaccccttgggatcgataaaccttttggatcttattaaccaa 119471 Query: 421 agaaatacgactttgggctatggttagctcagctccaatcaagaatccccaagggacccc 480 ||| |||||||||||||||||||||| || |||||||||||||||||||||||| |||| Sbjct: 119470 agagatacgactttgggctatggttaacttagctccaatcaagaatccccaaggaccccc 119411 Query: 481 aagaattcttggtatacgctcattccaatcctcaattctcctttcgagattgggggataa 540 ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 119410 aagaattcttggtatacgctcattccaatcctcaattctcctttcgagatttggcgatag 119351 Query: 541 tgaatcaattgaacgcgct 559 ||||||||||||||||||| Sbjct: 119350 tgaatcaattgaacgcgct 119332 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 401 ttttggattttattaaccaa 420 |||||||||||||||||||| Sbjct: 92293 ttttggattttattaaccaa 92312
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 848 bits (428), Expect = 0.0 Identities = 524/559 (93%), Gaps = 1/559 (0%) Strand = Plus / Minus Query: 1 gttcttgtcttgtggggaacgatgcacaaatttttggaatccggtaccaacaggtataat 60 ||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||| Sbjct: 12822430 gttcttgtcttgtaggtaacggtgcacaaatttttggaatccggtaccaacaggtataat 12822371 Query: 61 nnnnnnnagaactacgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggc 120 ||||||||||||||||||| |||||||||||||||||| |||||||||| ||| Sbjct: 12822370 cccccc-agaactacgttttctttcaggcctttcaaccaatcaatacgacctcgtaaggc 12822312 Query: 121 agcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggt 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 12822311 agcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggt 12822252 Query: 181 attcagggaagcccttgttattcccaataagattgcccgataatagatcgattcatccaa 240 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 12822251 attcagggaaacccttgttattcccaataagattgcccgataatagatcgattcatccaa 12822192 Query: 241 agctcgccctgctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncatt 300 ||| ||||||||||| || |||||||||||||| |||||||||||||| |||| Sbjct: 12822191 agcccgccctgctcgctctgctcgcaatagtccaattaattccccaggtgaaaaaacatt 12822132 Query: 301 agacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctctat 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 12822131 agacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctctat 12822072 Query: 361 atgtctattatggatctgtaccccttgggatcgataaaccttttggattttattaaccaa 420 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 12822071 atgtctattatggatctgtaccccttgggatcgataaaccttttggatcttattaaccaa 12822012 Query: 421 agaaatacgactttgggctatggttagctcagctccaatcaagaatccccaagggacccc 480 ||| |||||||||||||||||||||| || |||||||||||||||||||||||| |||| Sbjct: 12822011 agagatacgactttgggctatggttaacttagctccaatcaagaatccccaaggaccccc 12821952 Query: 481 aagaattcttggtatacgctcattccaatcctcaattctcctttcgagattgggggataa 540 ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 12821951 aagaattcttggtatacgctcattccaatcctcaattctcctttcgagatttggcgatag 12821892 Query: 541 tgaatcaattgaacgcgct 559 ||||||||||||||||||| Sbjct: 12821891 tgaatcaattgaacgcgct 12821873 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 401 ttttggattttattaaccaa 420 |||||||||||||||||||| Sbjct: 12794834 ttttggattttattaaccaa 12794853
>emb|X52270.1|CHZMATPI Maize chloroplast 3'part of rpoC2 gene, rps2 gene, atpI gene and 5'part of atpH gene Length = 3463 Score = 781 bits (394), Expect = 0.0 Identities = 461/488 (94%) Strand = Plus / Minus Query: 1 gttcttgtcttgtggggaacgatgcacaaatttttggaatccggtaccaacaggtataat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 488 gttcttgtcttgtggggaacgatgcacaaatttttggaatccggtaccaacaggtataat 429 Query: 61 nnnnnnnagaactacgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggc 120 ||||||||||||||||||| ||||||||||||||||| |||||||||||||| Sbjct: 428 cccccccagaactacgttttctttcagacctttcaaccaatcaatacgacctcgtagggc 369 Query: 121 agcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggt 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 368 agcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggt 309 Query: 181 attcagggaagcccttgttattcccaataagattgcccgataatagatcgattcatccaa 240 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 308 attcagggaagcccttgttattcccaataagattgcccgataatagatcgattcatctaa 249 Query: 241 agctcgccctgctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncatt 300 ||| ||||||||||||||||||||||||||||| |||||||||||||| |||| Sbjct: 248 agcccgccctgctcgttccgctcgcaatagtcctattaattccccaggtaaaaaaacatt 189 Query: 301 agacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctctat 360 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 188 agacattccatcttcggaaacccttacttttgatgttacttggcgtataataatctctat 129 Query: 361 atgtctattatggatctgtaccccttgggatcgataaaccttttggattttattaaccaa 420 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 128 atgtctattatggatctgtaccccttgggatcgataaaccttttggatcttattaaccaa 69 Query: 421 agaaatacgactttgggctatggttagctcagctccaatcaagaatccccaagggacccc 480 ||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct: 68 agagatacgactttgggctatggttagctcagctccaatcaagaatccccagggaacccc 9 Query: 481 aagaattc 488 |||||||| Sbjct: 8 aagaattc 1
>emb|AJ222797.1|CHMSINTER Miscanthus sinensis chloroplast DNA rpoC2-rps2 intergenic spacer Length = 960 Score = 670 bits (338), Expect = 0.0 Identities = 450/488 (92%), Gaps = 3/488 (0%) Strand = Plus / Minus Query: 1 gttcttgtcttgtggggaacgatgca-caaatttttggaatccggtaccaacaggtataa 59 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 491 gttcttgtcttgtggggaacgatgcagcaaatttttggaatccggtaccaacaggtataa 432 Query: 60 tnnnnnnnagaactacg-ttttctttcaagcctttcaacc-aatcaatgcgacctcgtag 117 | ||||||||| |||||||||| |||| |||||| ||||||| ||||||||||| Sbjct: 431 tcccccccagaactacggttttctttcaggcctgtcaacccaatcaatacgacctcgtag 372 Query: 118 ggcagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttg 177 |||||||||| | | |||||||||||||||||| ||||||||||||||||| |||||| Sbjct: 371 ggcagcttttctgagagctcgagcagtttcttgaacacttgcttcagatatgacactttg 312 Query: 178 ggtattcagggaagcccttgttattcccaataagattgcccgataatagatcgattcatc 237 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 311 ggtattcagggaagcccttgttattcccaataagattgcccgataatagatcgattcatc 252 Query: 238 caaagctcgccctgctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnnc 297 ||||| ||||||||||||||||||||||||||||| |||||||||||||| | Sbjct: 251 taaagcccgccctgctcgttccgctcgcaatagtcctattaattccccaggtaaaaaaac 192 Query: 298 attagacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctc 357 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 191 attagacattccatcttcggaaacccttacttttgatgttacttggcgtataataatctc 132 Query: 358 tatatgtctattatggatctgtaccccttgggatcgataaaccttttggattttattaac 417 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 131 tatatgtctattatggatctgtaccccttgggatcgataaaccttttggatcttattaac 72 Query: 418 caaagaaatacgactttgggctatggttagctcagctccaatcaagaatccccaagggac 477 ||| || ||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct: 71 caaggagatacgactttgggctatggttagctcagctccaatcaagaatccccagggaac 12 Query: 478 cccaagaa 485 |||||||| Sbjct: 11 cccaagaa 4
>gb|DQ069545.1| Typha latifolia RNA polymerase beta'' chain (rpoC2) gene, partial cds; chloroplast Length = 4161 Score = 622 bits (314), Expect = e-175 Identities = 459/512 (89%) Strand = Plus / Minus Query: 17 gaacgatgcacaaatttttggaatccggtaccaacaggtataatnnnnnnnagaactacg 76 |||||||||||||||||||||||||| ||||||||||||||||| ||||| ||| Sbjct: 3986 gaacgatgcacaaatttttggaatccagtaccaacaggtataatcccccctagaacaacg 3927 Query: 77 ttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaact 136 || ||||||| |||||||||||||||||| |||||||||| |||||||||||||||||| Sbjct: 3926 ttctctttcaggcctttcaaccaatcaatacgacctcgtaaagcagcttttgctaaaact 3867 Query: 137 cgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaagccctt 196 |||||||||||||||||||||||||| |||||||||||||| |||||||| || || ||| Sbjct: 3866 cgagcagtttcttgaaaacttgcttcggatatgaaactttgagtattcagagatgctctt 3807 Query: 197 gttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgctcgt 256 ||||||||||||||||||||||||||| |||||||||||| |||||| |||||||| ||| Sbjct: 3806 gttattcccaataagattgcccgataacagatcgattcattcaaagcgcgccctgcgcgt 3747 Query: 257 tccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatcttcg 316 ||||||||||| | |||||||||||| ||||| ||||||||||||||||||| Sbjct: 3746 tccgctcgcaacaatccgattaattctccaggtgaaaaaacattagacattccatcttct 3687 Query: 317 gaaacccgcacttttgatgttacttggcgtataataatctctatatgtctattatggatc 376 |||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||| Sbjct: 3686 gaaaccaatacttttgatgttacttgacgtacaataatctctatatgtctattatggatc 3627 Query: 377 tgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgactttgg 436 |||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct: 3626 tgtaccccctgggatcgataaaccttttggatcttattaaccaaagagatacgactttga 3567 Query: 437 gctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttggtata 496 ||||||||||||||||||||||| ||||| ||||| |||| ||||||||||||||||||| Sbjct: 3566 gctatggttagctcagctccaattaagaacccccaggggatcccaagaattcttggtata 3507 Query: 497 cgctcattccaatcctcaattctcctttcgag 528 || || |||||| | |||| |||||||||||| Sbjct: 3506 cgttcgttccaaccttcaactctcctttcgag 3475
>gb|DQ069546.1| Yucca schidigera RNA polymerase beta'' chain (rpoC2) gene, partial cds; chloroplast Length = 4152 Score = 561 bits (283), Expect = e-157 Identities = 449/509 (88%) Strand = Plus / Minus Query: 17 gaacgatgcacaaatttttggaatccggtaccaacaggtataatnnnnnnnagaactacg 76 ||||| ||||| ||||||| |||||| ||||| ||||| ||||| ||||| || Sbjct: 3992 gaacggtgcactaattttttgaatcccgtaccgacagggataataccccccagaacaaca 3933 Query: 77 ttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaact 136 ||||||||||| || |||||||||||||| ||||| ||||| |||||||||||||||||| Sbjct: 3932 ttttctttcaaacccttcaaccaatcaatacgaccccgtagagcagcttttgctaaaact 3873 Query: 137 cgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaagccctt 196 | |||||||||||||||||||||||| |||||||||||||| |||||||| || ||||| Sbjct: 3872 ctagcagtttcttgaaaacttgcttcggatatgaaactttgagtattcagagatgccctc 3813 Query: 197 gttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgctcgt 256 |||||||||||||| |||||||||||| |||||| ||| || ||||| |||||||||||| Sbjct: 3812 gttattcccaataaaattgcccgataacagatcgcttcgtctaaagcacgccctgctcgt 3753 Query: 257 tccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatcttcg 316 ||||||||||| | |||||||||||| ||||| |||||||||||||||||| Sbjct: 3752 tccgctcgcaacaatccgattaattctccaggtaaaaaaagattagacattccatcttct 3693 Query: 317 gaaacccgcacttttgatgttacttggcgtataataatctctatatgtctattatggatc 376 |||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||| Sbjct: 3692 gaaaccaacacttttgatgttacttgccgtacaataatctctatatgtctattatggatc 3633 Query: 377 tgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgactttgg 436 |||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||| Sbjct: 3632 tgtaccccctgggatcgataaaccttttggatcttattaaccaaagagatacgactttgg 3573 Query: 437 gctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttggtata 496 ||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||| Sbjct: 3572 gctatggttagctcagctccaattaagaatccccaaggaattccaagaattcttggtata 3513 Query: 497 cgctcattccaatcctcaattctcctttc 525 ||||| |||||| | |||| ||||||||| Sbjct: 3512 cgctcgttccaaccttcaactctcctttc 3484
>gb|AY916449.1| Phalaenopsis aphrodite subsp. formosana plastid, complete genome Length = 148964 Score = 525 bits (265), Expect = e-146 Identities = 467/539 (86%) Strand = Plus / Plus Query: 17 gaacgatgcacaaatttttggaatccggtaccaacaggtataatnnnnnnnagaactacg 76 |||||||| || ||||| | ||||||||||||||| |||||||| ||||| ||| Sbjct: 17279 gaacgatgtactaatttattgaatccggtaccaaccggtataattccccccagaacaacg 17338 Query: 77 ttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaact 136 |||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct: 17339 ttttctttcaggcctttcaaccaatcaatacgacctcgtagagcagcttttgctaaaact 17398 Query: 137 cgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaagccctt 196 |||||||||||||||||||||||||| |||||||||||||| |||||||| || | | | Sbjct: 17399 cgagcagtttcttgaaaacttgcttcggatatgaaactttgagtattcagagatgacttc 17458 Query: 197 gttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgctcgt 256 ||||||||||||||||||||||||||| |||| ||||| ||||| | |||||||||||| Sbjct: 17459 gttattcccaataagattgcccgataacagattgattcggccaaaacgcgccctgctcgt 17518 Query: 257 tccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatcttcg 316 || |||||||| | ||| || ||||||||||| |||||||||||||||||||| Sbjct: 17519 tctgctcgcaacaatccaataaattccccaggtaaaaaaacattagacattccatcttcg 17578 Query: 317 gaaacccgcacttttgatgttacttggcgtataataatctctatatgtctattatggatc 376 |||||| ||| ||||||||||||| |||| ||||||||||| |||||||||||||||| Sbjct: 17579 gaaaccaaaactcttgatgttacttgacgtacaataatctctagatgtctattatggatc 17638 Query: 377 tgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgactttgg 436 |||||||| |||||||||||||||||||| || |||||||||||||| |||||||||||| Sbjct: 17639 tgtaccccctgggatcgataaaccttttgtatcttattaaccaaagagatacgactttgg 17698 Query: 437 gctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttggtata 496 ||||||||||| ||||||||||||||||||||||| |||| ||||||||| ||| | ||| Sbjct: 17699 gctatggttagttcagctccaatcaagaatccccaggggatcccaagaatccttcggata 17758 Query: 497 cgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattgaacg 555 || || | |||| | |||| ||| |||||||| || |||| ||||||||||||||| Sbjct: 17759 cgttcgtcccaaccttcaactcttctttcgaggttcatcgatattgaatcaattgaacg 17817
>dbj|AK062380.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-102-B08, full insert sequence Length = 714 Score = 480 bits (242), Expect = e-132 Identities = 306/332 (92%) Strand = Plus / Minus Query: 1 gttcttgtcttgtggggaacgatgcacaaatttttggaatccggtaccaacaggtataat 60 |||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct: 332 gttcttgttttgtgggtaacggtgcacaaatttttggaatccggtaccaacaggtataat 273 Query: 61 nnnnnnnagaactacgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggc 120 ||||||||||||||||||| |||||||||||||||||| |||||||||| ||| Sbjct: 272 cccccccagaactacgttttctttcaggcctttcaaccaatcaatacgacctcgtaaggc 213 Query: 121 agcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggt 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 212 agcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggt 153 Query: 181 attcagggaagcccttgttattcccaataagattgcccgataatagatcgattcatccaa 240 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 152 attcagggaaacccttgttattcccaataagattgcccgataatagatcgattcatccaa 93 Query: 241 agctcgccctgctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncatt 300 ||| ||||||||||| || |||||||||||||| |||||||||||||| |||| Sbjct: 92 agcccgccctgctcgctctgctcgcaatagtccaattaattccccaggtaaaaaaacatt 33 Query: 301 agacattccatcttcggaaacccgcacttttg 332 |||||||||||||||||||||||||||||||| Sbjct: 32 agacattccatcttcggaaacccgcacttttg 1
>emb|AJ428413.1|CFE428413 Calycanthus fertilis var. ferax complete chloroplast genome Length = 153337 Score = 448 bits (226), Expect = e-123 Identities = 407/472 (86%) Strand = Plus / Plus Query: 37 gaatccggtaccaacaggtataatnnnnnnnagaactacgttttctttcaagcctttcaa 96 |||||||||||||||||| || || ||||| ||||| ||||||| ||||||||| Sbjct: 17267 gaatccggtaccaacaggcatcatcccccccagaacaacgttctctttcaggcctttcaa 17326 Query: 97 ccaatcaatgcgacctcgtagggcagcttttgctaaaactcgagcagtttcttgaaaact 156 ||||||||| ||||||||||| || |||||||||||||||||||| |||||||||||||| Sbjct: 17327 ccaatcaatacgacctcgtagagcggcttttgctaaaactcgagcggtttcttgaaaact 17386 Query: 157 tgcttcagatatgaaactttgggtattcagggaagcccttgttattcccaataagattgc 216 ||||| |||||||||||||| ||||||| || ||||| ||||||||||||||||| || Sbjct: 17387 cgcttcggatatgaaactttgagtattcaaagatgccctcgttattcccaataagatagc 17446 Query: 217 ccgataatagatcgattcatccaaagctcgccctgctcgttccgctcgcaatagtccgat 276 || ||| |||||| ||| |||||||| ||||| | ||||||||||||||| | |||||| Sbjct: 17447 tcggtaacagatcgcttcttccaaagcacgcccggttcgttccgctcgcaacaatccgat 17506 Query: 277 taattccccaggcnnnnnnncattagacattccatcttcggaaacccgcacttttgatgt 336 || ||| || || ||||||||||||||||||| |||||| |||| ||||||| Sbjct: 17507 tagttctccgggtgaaaaaacattagacattccatcttctgaaaccaacactcttgatgt 17566 Query: 337 tacttggcgtataataatctctatatgtctattatggatctgtaccccttgggatcgata 396 || ||| |||| ||||||||||||||| |||||||||||||| ||||| ||||| ||||| Sbjct: 17567 tatttgacgtacaataatctctatatgcctattatggatctgcaccccctgggaccgata 17626 Query: 397 aaccttttggattttattaaccaaagaaatacgactttgggctatggttagctcagctcc 456 |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| || Sbjct: 17627 aaccttttggatcttattaaccaaagaaatacgactttgcgctatggttagctcagcacc 17686 Query: 457 aatcaagaatccccaagggaccccaagaattcttggtatacgctcattccaa 508 |||||||||||||||||| | |||||||||| ||| |||||| || |||||| Sbjct: 17687 aatcaagaatccccaaggaatcccaagaatttttgttatacgttcgttccaa 17738
>gb|DQ345959.1| Gossypium hirsutum cultivar coker 310 FR chloroplast, complete genome Length = 160301 Score = 387 bits (195), Expect = e-104 Identities = 386/452 (85%) Strand = Plus / Plus Query: 74 acgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaa 133 ||||||||||||| ||||||||||||||| || ||||| || || ||||||||||||||| Sbjct: 17520 acgttttctttcaggcctttcaaccaatcgatacgaccccggagagcagcttttgctaaa 17579 Query: 134 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaagcc 193 ||||||||||||||||||||||||||||||||||| |||||||| || ||||| || || Sbjct: 17580 actcgagcagtttcttgaaaacttgcttcagatataaaactttgagtgttcagagatgct 17639 Query: 194 cttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgct 253 || |||||||||||||| | || |||||| | |||| ||| || ||||| ||||| | | Sbjct: 17640 ctcgttattcccaataaaacggctcgataacaaatcgcttcttctaaagcacgccccgtt 17699 Query: 254 cgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatct 313 |||||||||||||||| ||| || | |||||| || ||||||||||||||||| Sbjct: 17700 cgttccgctcgcaataatccaatcagttccccgggtaaaaaaacattagacattccatct 17759 Query: 314 tcggaaacccgcacttttgatgttacttggcgtataataatctctatatgtctattatgg 373 || |||||| ||||||||||||| ||| |||| |||||| |||||||| ||||||||| Sbjct: 17760 tctgaaaccaatacttttgatgttatttgacgtacaataatttctatatgcctattatgg 17819 Query: 374 atctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgactt 433 ||||||||||| || |||||||||||||||||||| |||||||||||||| | ||||||| Sbjct: 17820 atctgtaccccctgagatcgataaaccttttggatcttattaaccaaagagagacgactt 17879 Query: 434 tgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttggt 493 || |||| ||||||||||| ||||||| |||||||||||| | ||||||||||||| | Sbjct: 17880 tgcactatagttagctcagcaccaatcacgaatccccaaggaattccaagaattcttgtt 17939 Query: 494 atacgctcattccaatcctcaattctcctttc 525 |||| || |||||| ||||||||||| |||| Sbjct: 17940 atacattcgttccaaccctcaattctcttttc 17971
>gb|AY521596.1| Cucumis sativus isolate GY-14, chloroplast sequence Length = 16653 Score = 383 bits (193), Expect = e-103 Identities = 390/458 (85%) Strand = Plus / Plus Query: 68 agaactacgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagctttt 127 ||||| ||||| |||||||| ||| |||||||||| || |||||||| ||||| |||||| Sbjct: 6987 agaacaacgttctctttcaaacctctcaaccaatcgatacgacctcggagggcggctttt 7046 Query: 128 gctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagg 187 ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| || Sbjct: 7047 gctaaaactcgagcagtttcttgaaaacttgcttccgatatgaaactttgagtatttaga 7106 Query: 188 gaagcccttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgc 247 || || | |||||||||||||| | || || ||| |||||| ||| |||||||| ||| Sbjct: 7107 gatgctttcgttattcccaataatacggctcggtaacagatcgcttcttccaaagcacgc 7166 Query: 248 cctgctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacatt 307 |||| |||||||||||| || | || || | ||| ||||| ||||||||||| Sbjct: 7167 cctgttcgttccgctcgtaacaacccaatgagttctccaggtgaaaaaacattagacatt 7226 Query: 308 ccatcttcggaaacccgcacttttgatgttacttggcgtataataatctctatatgtcta 367 |||||||| |||||| |||||||||||||| ||| |||| |||||| || ||||||||| Sbjct: 7227 ccatcttctgaaaccaacacttttgatgttatttgacgtacaataatttcgatatgtcta 7286 Query: 368 ttatggatctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaata 427 |||||||||| ||||| ||||||||||||||||||||||| |||||||||||||| ||| Sbjct: 7287 ttatggatctccaccccctgggatcgataaaccttttggatcttattaaccaaagagata 7346 Query: 428 cgactttgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaatt 487 |||||||| |||| ||||| ||||| |||||||| ||||||||||| | ||||||||| Sbjct: 7347 cgactttgcactatcgttagttcagcaccaatcaaaaatccccaaggaattccaagaatt 7406 Query: 488 cttggtatacgctcattccaatcctcaattctcctttc 525 |||| ||||||||| |||||| ||||||||||| |||| Sbjct: 7407 cttgttatacgctcgttccaaccctcaattctcttttc 7444
>emb|AJ970307.1| Cucumis sativus chloroplast complete genome Length = 155293 Score = 383 bits (193), Expect = e-103 Identities = 390/458 (85%) Strand = Plus / Plus Query: 68 agaactacgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagctttt 127 ||||| ||||| |||||||| ||| |||||||||| || |||||||| ||||| |||||| Sbjct: 17588 agaacaacgttctctttcaaacctctcaaccaatcgatacgacctcggagggcggctttt 17647 Query: 128 gctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagg 187 ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| || Sbjct: 17648 gctaaaactcgagcagtttcttgaaaacttgcttccgatatgaaactttgagtatttaga 17707 Query: 188 gaagcccttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgc 247 || || | |||||||||||||| | || || ||| |||||| ||| |||||||| ||| Sbjct: 17708 gatgctttcgttattcccaataatacggctcggtaacagatcgcttcttccaaagcacgc 17767 Query: 248 cctgctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacatt 307 |||| |||||||||||| || | || || | ||| ||||| ||||||||||| Sbjct: 17768 cctgttcgttccgctcgtaacaacccaatgagttctccaggtgaaaaaacattagacatt 17827 Query: 308 ccatcttcggaaacccgcacttttgatgttacttggcgtataataatctctatatgtcta 367 |||||||| |||||| |||||||||||||| ||| |||| |||||| || ||||||||| Sbjct: 17828 ccatcttctgaaaccaacacttttgatgttatttgacgtacaataatttcgatatgtcta 17887 Query: 368 ttatggatctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaata 427 |||||||||| ||||| ||||||||||||||||||||||| |||||||||||||| ||| Sbjct: 17888 ttatggatctccaccccctgggatcgataaaccttttggatcttattaaccaaagagata 17947 Query: 428 cgactttgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaatt 487 |||||||| |||| ||||| ||||| |||||||| ||||||||||| | ||||||||| Sbjct: 17948 cgactttgcactatcgttagttcagcaccaatcaaaaatccccaaggaattccaagaatt 18007 Query: 488 cttggtatacgctcattccaatcctcaattctcctttc 525 |||| ||||||||| |||||| ||||||||||| |||| Sbjct: 18008 cttgttatacgctcgttccaaccctcaattctcttttc 18045
>emb|AJ400848.1|SOL400848 Spinacia oleracea complete chloroplast genome Length = 150725 Score = 383 bits (193), Expect = e-103 Identities = 434/519 (83%) Strand = Plus / Plus Query: 37 gaatccggtaccaacaggtataatnnnnnnnagaactacgttttctttcaagcctttcaa 96 ||||||||||||||||||||| || ||||| ||||||||||| | |||||||| Sbjct: 15495 gaatccggtaccaacaggtatcatcccccccagaacaacgttttcttttagtcctttcaa 15554 Query: 97 ccaatcaatgcgacctcgtagggcagcttttgctaaaactcgagcagtttcttgaaaact 156 ||||||||| || || ||||| || ||||||||||||||||||||||||||||||||||| Sbjct: 15555 ccaatcaatacggccccgtagagctgcttttgctaaaactcgagcagtttcttgaaaact 15614 Query: 157 tgcttcagatatgaaactttgggtattcagggaagcccttgttattcccaataagattgc 216 ||||| || || |||||||| |||||||| || || || ||||||||||||||| | || Sbjct: 15615 cgcttcggagataaaactttgagtattcagagatgctctcgttattcccaataaggtagc 15674 Query: 217 ccgataatagatcgattcatccaaagctcgccctgctcgttccgctcgcaatagtccgat 276 || ||| | |||| ||| |||||||| || || | ||||||||| || || | ||| || Sbjct: 15675 gcggtaacatatcgcttcttccaaagcgcgtcccgttcgttccgcccgaaacaatccaat 15734 Query: 277 taattccccaggcnnnnnnncattagacattccatcttcggaaacccgcacttttgatgt 336 || ||| || ||| ||||||||||||||||||| |||||| ||||||||||| Sbjct: 15735 tagttctccgggcaaaaaaacattagacattccatcttctgaaaccaagacttttgatgt 15794 Query: 337 tacttggcgtataataatctctatatgtctattatggatctgtaccccttgggatcgata 396 || ||| |||| |||||| ||||||||||||||||||||||| |||||||| |||||||| Sbjct: 15795 tatttgacgtacaataatttctatatgtctattatggatctgcaccccttgtgatcgata 15854 Query: 397 aaccttttggattttattaaccaaagaaatacgactttgggctatggttagctcagctcc 456 |||||||||||| || ||||||||||||||||||||||| ||||| ||||||||||| || Sbjct: 15855 aaccttttggatcttgttaaccaaagaaatacgactttgcgctatagttagctcagcccc 15914 Query: 457 aatcaagaatccccaagggaccccaagaattcttggtatacgctcattccaatcctcaat 516 |||||||||||||||||| ||||||||||||| |||||| || |||||| ||||| Sbjct: 15915 aatcaagaatccccaaggacttccaagaattcttgttatacgttcgttccaactatcaat 15974 Query: 517 tctcctttcgagattgggggataatgaatcaattgaacg 555 ||| |||| |||||| ||||| ||||||||| ||||| Sbjct: 15975 cctcttttctagattgatggatattgaatcaatcgaacg 16013
>gb|DQ119058.1| Cucumis sativus cultivar Baekmibaekdadagi plastid, complete genome Length = 155527 Score = 383 bits (193), Expect = e-103 Identities = 390/458 (85%) Strand = Plus / Plus Query: 68 agaactacgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagctttt 127 ||||| ||||| |||||||| ||| |||||||||| || |||||||| ||||| |||||| Sbjct: 17577 agaacaacgttctctttcaaacctctcaaccaatcgatacgacctcggagggcggctttt 17636 Query: 128 gctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagg 187 ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| || Sbjct: 17637 gctaaaactcgagcagtttcttgaaaacttgcttccgatatgaaactttgagtatttaga 17696 Query: 188 gaagcccttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgc 247 || || | |||||||||||||| | || || ||| |||||| ||| |||||||| ||| Sbjct: 17697 gatgctttcgttattcccaataatacggctcggtaacagatcgcttcttccaaagcacgc 17756 Query: 248 cctgctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacatt 307 |||| |||||||||||| || | || || | ||| ||||| ||||||||||| Sbjct: 17757 cctgttcgttccgctcgtaacaacccaatgagttctccaggtgaaaaaacattagacatt 17816 Query: 308 ccatcttcggaaacccgcacttttgatgttacttggcgtataataatctctatatgtcta 367 |||||||| |||||| |||||||||||||| ||| |||| |||||| || ||||||||| Sbjct: 17817 ccatcttctgaaaccaacacttttgatgttatttgacgtacaataatttcgatatgtcta 17876 Query: 368 ttatggatctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaata 427 |||||||||| ||||| ||||||||||||||||||||||| |||||||||||||| ||| Sbjct: 17877 ttatggatctccaccccctgggatcgataaaccttttggatcttattaaccaaagagata 17936 Query: 428 cgactttgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaatt 487 |||||||| |||| ||||| ||||| |||||||| ||||||||||| | ||||||||| Sbjct: 17937 cgactttgcactatcgttagttcagcaccaatcaaaaatccccaaggaattccaagaatt 17996 Query: 488 cttggtatacgctcattccaatcctcaattctcctttc 525 |||| ||||||||| |||||| ||||||||||| |||| Sbjct: 17997 cttgttatacgctcgttccaaccctcaattctcttttc 18034
>gb|DQ069543.1| Nuphar advena RNA polymerase beta'' chain (rpoC2) gene, partial cds; chloroplast Length = 4170 Score = 369 bits (186), Expect = 7e-99 Identities = 382/452 (84%) Strand = Plus / Minus Query: 37 gaatccggtaccaacaggtataatnnnnnnnagaactacgttttctttcaagcctttcaa 96 ||||||||||||||| ||||| || ||||| || || ||||||| ||||||||| Sbjct: 3993 gaatccggtaccaacgggtatcatcccccccagaacaacattctctttcaggcctttcaa 3934 Query: 97 ccaatcaatgcgacctcgtagggcagcttttgctaaaactcgagcagtttcttgaaaact 156 ||||||||| ||||| || || || |||||||||||||||||||| ||||| |||||||| Sbjct: 3933 ccaatcaatacgaccccggagagcggcttttgctaaaactcgagcggtttcctgaaaact 3874 Query: 157 tgcttcagatatgaaactttgggtattcagggaagcccttgttattcccaataagattgc 216 ||||| |||||||||||||| |||||||| || || || |||||||||||||||| || Sbjct: 3873 agcttctgatatgaaactttgagtattcagagatgctctcgttattcccaataagacggc 3814 Query: 217 ccgataatagatcgattcatccaaagctcgccctgctcgttccgctcgcaatagtccgat 276 || ||| | || | || |||||||| || ||||||||||| |||||||| | |||||| Sbjct: 3813 tcggtaacaaatagcctcttccaaagcacgacctgctcgttctgctcgcaacaatccgat 3754 Query: 277 taattccccaggcnnnnnnncattagacattccatcttcggaaacccgcacttttgatgt 336 || |||||| || ||||||||||||||||||| |||||| |||||||||||| Sbjct: 3753 tagttccccgggtgaaaaaacattagacattccatcttctgaaaccaacacttttgatgt 3694 Query: 337 tacttggcgtataataatctctatatgtctattatggatctgtaccccttgggatcgata 396 || ||| |||| ||||||||||||||| |||||||| ||||||||||| ||||||||||| Sbjct: 3693 tatttgtcgtacaataatctctatatgcctattatgaatctgtaccccctgggatcgata 3634 Query: 397 aaccttttggattttattaaccaaagaaatacgactttgggctatggttagctcagctcc 456 |||||||||||| |||||||||||||||||||||||||| |||||||| || ||||| || Sbjct: 3633 aaccttttggatcttattaaccaaagaaatacgactttgcgctatggtgagttcagcacc 3574 Query: 457 aatcaagaatccccaagggaccccaagaattc 488 ||||| |||||||||||| | |||||||||| Sbjct: 3573 aatcaggaatccccaaggaattccaagaattc 3542
>gb|DQ424856.1| Vitis vinifera cultivar Maxxa chloroplast, complete genome Length = 160928 Score = 369 bits (186), Expect = 7e-99 Identities = 409/488 (83%) Strand = Plus / Plus Query: 38 aatccggtaccaacaggtataatnnnnnnnagaactacgttttctttcaagcctttcaac 97 |||||||||||||| ||||| || ||||| ||||||||||| | |||||||||| Sbjct: 18353 aatccggtaccaacgggtatcatcccccccagaacgacgttttcttttaggcctttcaac 18412 Query: 98 caatcaatgcgacctcgtagggcagcttttgctaaaactcgagcagtttcttgaaaactt 157 ||||| || ||||| | || |||||||||||||||||||||||||||||||||||||| Sbjct: 18413 caatcgatacgaccccacagagcagcttttgctaaaactcgagcagtttcttgaaaactc 18472 Query: 158 gcttcagatatgaaactttgggtattcagggaagcccttgttattcccaataagattgcc 217 || || |||||||||||||| |||||||| || || || |||||||||||||| || | Sbjct: 18473 gcctcggatatgaaactttgagtattcagagacgctctcgttattcccaataaaatggtt 18532 Query: 218 cgataatagatcgattcatccaaagctcgccctgctcgttccgctcgcaatagtccgatt 277 || ||| | || | ||| || ||||| ||||| | ||||||||||||||| | ||| ||| Sbjct: 18533 cggtaacaaatagcttcttcgaaagcacgccccgttcgttccgctcgcaacaatccaatt 18592 Query: 278 aattccccaggcnnnnnnncattagacattccatcttcggaaacccgcacttttgatgtt 337 | ||| || ||| ||||||||||||||||||| |||||| ||||||||||||| Sbjct: 18593 agttctccgggcgaaaaaacattagacattccatcttctgaaaccaacacttttgatgtt 18652 Query: 338 acttggcgtataataatctctatatgtctattatggatctgtaccccttgggatcgataa 397 | ||| |||| |||||| |||||||| |||||||||||||| ||||| |||||||||||| Sbjct: 18653 atttgacgtacaataatttctatatgcctattatggatctgaaccccctgggatcgataa 18712 Query: 398 accttttggattttattaaccaaagaaatacgactttgggctatggttagctcagctcca 457 ||||||||||| |||||||| ||||| ||||||||||| ||||| ||||||||||| ||| Sbjct: 18713 accttttggatcttattaactaaagagatacgactttgcgctatagttagctcagcacca 18772 Query: 458 atcaagaatccccaagggaccccaagaattcttggtatacgctcattccaatcctcaatt 517 || |||||||||||||| | ||||||||||||| |||| |||| |||||| |||||| | Sbjct: 18773 atgaagaatccccaaggaattccaagaattcttgttatatgctcgttccaaccctcaact 18832 Query: 518 ctcctttc 525 ||| |||| Sbjct: 18833 ctcttttc 18840
>gb|AY582139.1| Panax ginseng chloroplast, complete genome Length = 156318 Score = 369 bits (186), Expect = 7e-99 Identities = 433/520 (83%) Strand = Plus / Plus Query: 37 gaatccggtaccaacaggtataatnnnnnnnagaactacgttttctttcaagcctttcaa 96 ||||||||||||||| ||||| || ||||| ||||| ||||||| ||||||||| Sbjct: 18040 gaatccggtaccaacgggtatcattccccccagaacaacgttctctttcaggcctttcaa 18099 Query: 97 ccaatcaatgcgacctcgtagggcagcttttgctaaaactcgagcagtttcttgaaaact 156 |||||| || ||||| || || || ||||||||||||||||||||||||||||||||||| Sbjct: 18100 ccaatcgatacgaccccggagagctgcttttgctaaaactcgagcagtttcttgaaaact 18159 Query: 157 tgcttcagatatgaaactttgggtattcagggaagcccttgttattcccaataagattgc 216 ||||| |||||||||||||| |||||||| || || |||||||||||||||||| || Sbjct: 18160 cgcttcggatatgaaactttgagtattcagagatgcttttgttattcccaataagacggc 18219 Query: 217 ccgataatagatcgattcatccaaagctcgccctgctcgttccgctcgcaatagtccgat 276 | ||| |||||| ||| |||||||| || || ||||||||||||||| | ||| || Sbjct: 18220 ttggtaacagatcgcttcttccaaagcgcgacccattcgttccgctcgcaacaatccaat 18279 Query: 277 taattccccaggcnnnnnnncattagacattccatcttcggaaacccgcacttttgatgt 336 ||||| || || |||||||||| |||||||| |||||| |||||||||||| Sbjct: 18280 aaattctccgggtaaaaaaacattagacatcccatcttctgaaaccaacacttttgatgt 18339 Query: 337 tacttggcgtataataatctctatatgtctattatggatctgtaccccttgggatcgata 396 || ||| |||| |||||| |||||||| |||||||||||||| ||||| ||||||||||| Sbjct: 18340 tatttgacgtacaataatttctatatgcctattatggatctgcaccccctgggatcgata 18399 Query: 397 aaccttttggattttattaaccaaagaaatacgactttgggctatggttagctcagctcc 456 |||||||||||| |||||||||||||||||||||||||| |||| ||||||||||| || Sbjct: 18400 aaccttttggatcttattaaccaaagaaatacgactttgcactatagttagctcagcccc 18459 Query: 457 aatcaagaatccccaagggaccccaagaattcttggtatacgctcattccaatcctcaat 516 |||||||||||||||||| | |||||| |||||| ||||| || ||||| |||||| Sbjct: 18460 aatcaagaatccccaaggaattccaagatttcttgttatacattcgttccagccctcaac 18519 Query: 517 tctcctttcgagattgggggataatgaatcaattgaacgc 556 ||| |||||||||| |||| ||||||||| |||||| Sbjct: 18520 cctcttttcgagattcatcgatattgaatcaatcgaacgc 18559
>gb|AY780259.1| Eucalyptus globulus subsp. globulus chloroplast, complete genome Length = 160286 Score = 369 bits (186), Expect = 7e-99 Identities = 448/540 (82%) Strand = Plus / Plus Query: 17 gaacgatgcacaaatttttggaatccggtaccaacaggtataatnnnnnnnagaactacg 76 ||||||||||| ||| || ||||||||||||||| ||||| || | ||| ||| Sbjct: 18152 gaacgatgcactaatcctttgaatccggtaccaacgggtatcatccctcctataacaacg 18211 Query: 77 ttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaact 136 || ||||| | ||||||||||||||| || || || || || |||||||| ||||||||| Sbjct: 18212 ttctcttttaggcctttcaaccaatcgatacggccccggagagcagctttggctaaaact 18271 Query: 137 cgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaagccctt 196 |||||||||||||||||||| |||||||||||||||||||| ||||||| || |||||| Sbjct: 18272 cgagcagtttcttgaaaactcgcttcagatatgaaactttgagtattcaaagatgccctt 18331 Query: 197 gttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgctcgt 256 ||||||||||||| ||| || || ||| |||||||||| |||||||| ||||| | ||| Sbjct: 18332 gttattcccaataggatggcgcggtaacagatcgattcttccaaagcgcgccccgttcgc 18391 Query: 257 tccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatcttcg 316 |||||||||| | ||| |||| ||| ||||| |||||||||||||||| || Sbjct: 18392 gccgctcgcaacaatccaattagttctccaggtaaaaaaacattagacattccatcctct 18451 Query: 317 gaaacccgcacttttgatgttacttggcgtataataatctctatatgtctattatggatc 376 |||||| ||| |||||||||| |||||||| |||||| ||||| || ||||||||||| Sbjct: 18452 gaaaccaacacctttgatgttatttggcgtacaataatttctatgtgcctattatggatt 18511 Query: 377 tgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgactttgg 436 || ||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct: 18512 tgcaccccctgggatcgataaaccttttggatcttattaaccaaagatatacgactttgc 18571 Query: 437 gctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttggtata 496 |||| ||||| ||||| |||||||||||||||||||| | ||||||||| || |||| Sbjct: 18572 actatagttagttcagccccaatcaagaatccccaaggaattccaagaattttttttata 18631 Query: 497 cgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattgaacgc 556 |||| |||||| |||||||||| |||| || || |||| |||||||||||||||| Sbjct: 18632 tgctcgttccaaccctcaattcttttttctaggttcatcgatattgaatcaattgaacgc 18691
>gb|DQ069544.1| Ranunculus macranthus RNA polymerase beta'' chain (rpoC2) gene, partial cds; chloroplast Length = 4128 Score = 357 bits (180), Expect = 3e-95 Identities = 365/429 (85%) Strand = Plus / Minus Query: 80 tctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaactcga 139 ||||||| ||||||||||||||||| |||||||||| || |||||||||||||||| | Sbjct: 3932 tctttcagtcctttcaaccaatcaatacgacctcgtaaagcggcttttgctaaaactcta 3873 Query: 140 gcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaagcccttgtt 199 ||||||||||||||||| |||||||||||||||||||| |||||||| || ||||| ||| Sbjct: 3872 gcagtttcttgaaaactcgcttcagatatgaaactttgagtattcagagatgccctcgtt 3813 Query: 200 attcccaataagattgcccgataatagatcgattcatccaaagctcgccctgctcgttcc 259 ||||| ||||| | || || ||| |||||| ||| |||||||| ||||| | ||||||| Sbjct: 3812 attcctaataaaacggctcggtaacagatcgcttcttccaaagcgcgccccgttcgttcc 3753 Query: 260 gctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatcttcggaa 319 || | ||| | ||| |||||||| || || ||||||||||||||||||| ||| Sbjct: 3752 gccctcaacaatccaattaattcaccgggtgaaaaaacattagacattccatcttctgaa 3693 Query: 320 acccgcacttttgatgttacttggcgtataataatctctatatgtctattatggatctgt 379 ||| |||||||||||||| ||| |||| |||||| |||||||| |||||||| ||||| Sbjct: 3692 accaacacttttgatgttatttgacgtacaataatttctatatgcctattatgtatctgc 3633 Query: 380 accccttgggatcgataaaccttttggattttattaaccaaagaaatacgactttgggct 439 || || || || |||||||||||||| || |||||||||||||| ||||||||||| ||| Sbjct: 3632 acgccctgcgagcgataaaccttttgaatcttattaaccaaagatatacgactttgtgct 3573 Query: 440 atggttagctcagctccaatcaagaatccccaagggaccccaagaattcttggtatacgc 499 |||||||||||||| |||||||||||||||||||| | ||||||| |||||| |||||| Sbjct: 3572 atggttagctcagcgccaatcaagaatccccaaggaatcccaagagttcttgttatacgt 3513 Query: 500 tcattccaa 508 || |||||| Sbjct: 3512 tcgttccaa 3504
>gb|DQ069541.1| Acorus americanus RNA polymerase beta'' chain (rpoC2) gene, partial cds; chloroplast Length = 4158 Score = 357 bits (180), Expect = 3e-95 Identities = 365/429 (85%) Strand = Plus / Minus Query: 68 agaactacgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagctttt 127 ||||| ||||| ||||||| ||||||||||||||||| ||||| ||||| || |||||| Sbjct: 3944 agaacaacgttctctttcaggcctttcaaccaatcaacacgaccccgtagagccgctttt 3885 Query: 128 gctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagg 187 || |||||||||||||||||||||||||| ||||| |||||||||||||| ||||||| Sbjct: 3884 gccaaaactcgagcagtttcttgaaaactcgcttcggatatgaaactttgagtattcaaa 3825 Query: 188 gaagcccttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgc 247 || || ||||||||||||||||||||||| |||||| |||||| ||| |||||||| || Sbjct: 3824 gacgctcttgttattcccaataagattgctcgataacagatcgcttcttccaaagcgcga 3765 Query: 248 cctgctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacatt 307 |||| ||||||||| ||||| | |||||| | ||| || || ||||||||||| Sbjct: 3764 cctgttcgttccgcccgcaacaatccgataagttctcccggtgaaaaaacattagacatt 3705 Query: 308 ccatcttcggaaacccgcacttttgatgttacttggcgtataataatctctatatgtcta 367 |||||||| |||||| |||||||||||||| ||| |||| ||||||||||||||| || Sbjct: 3704 ccatcttctgaaaccaacacttttgatgttatttgacgtacaataatctctatatgctta 3645 Query: 368 ttatggatctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaata 427 ||||| ||||| ||||| || ||||||||||| |||||||| |||||||||||||| ||| Sbjct: 3644 ttatgaatctgcaccccctgagatcgataaactttttggatcttattaaccaaagagata 3585 Query: 428 cgactttgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaatt 487 |||||||| |||||||||| ||| || || |||||||||||||| || | ||||||||| Sbjct: 3584 cgactttgcgctatggttaactcggcgccgatcaagaatccccagggaattccaagaatt 3525 Query: 488 cttggtata 496 ||| |||| Sbjct: 3524 tttgttata 3516
>emb|AJ879453.1| Acorus calamus chloroplast, complete genome Length = 153821 Score = 357 bits (180), Expect = 3e-95 Identities = 365/429 (85%) Strand = Plus / Plus Query: 68 agaactacgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagctttt 127 ||||| ||||| ||||||| ||||||||||||||||| ||||| ||||| || |||||| Sbjct: 16885 agaacaacgttctctttcaggcctttcaaccaatcaacacgaccccgtagagccgctttt 16944 Query: 128 gctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagg 187 || |||||||||||||||||||||||||| ||||| |||||||||||||| ||||||| Sbjct: 16945 gccaaaactcgagcagtttcttgaaaactcgcttcggatatgaaactttgagtattcaaa 17004 Query: 188 gaagcccttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgc 247 || || ||||||||||||||||||||||| |||||| |||||| ||| |||||||| || Sbjct: 17005 gacgctcttgttattcccaataagattgctcgataacagatcgcttcttccaaagcgcga 17064 Query: 248 cctgctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacatt 307 |||| ||||||||| ||||| | |||||| | ||| || || ||||||||||| Sbjct: 17065 cctgttcgttccgcccgcaacaatccgataagttctcccggtgaaaaaacattagacatt 17124 Query: 308 ccatcttcggaaacccgcacttttgatgttacttggcgtataataatctctatatgtcta 367 |||||||| |||||| |||||||||||||| ||| |||| ||||||||||||||| || Sbjct: 17125 ccatcttctgaaaccaacacttttgatgttatttgacgtacaataatctctatatgctta 17184 Query: 368 ttatggatctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaata 427 ||||| ||||| ||||| || ||||||||||| |||||||| |||||||||||||| ||| Sbjct: 17185 ttatgaatctgcaccccctgagatcgataaactttttggatcttattaaccaaagagata 17244 Query: 428 cgactttgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaatt 487 |||||||| |||||||||| ||| || || |||||||||||||| || | ||||||||| Sbjct: 17245 cgactttgcgctatggttaactcggcgccgatcaagaatccccagggaattccaagaatt 17304 Query: 488 cttggtata 496 ||| |||| Sbjct: 17305 tttgttata 17313
>emb|AJ316582.1|ABE316582 Atropa belladonna complete chloroplast genome, strain Ab5p(kan) Length = 156687 Score = 353 bits (178), Expect = 4e-94 Identities = 405/483 (83%) Strand = Plus / Plus Query: 74 acgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaa 133 ||||| ||||||| ||||||||||||||| || ||||| || || || |||||||||||| Sbjct: 17161 acgttctctttcaggcctttcaaccaatcgatacgaccccggagagccgcttttgctaaa 17220 Query: 134 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaagcc 193 ||||||||||||||||||||||| |||||||||||||||||||| ||||| || || || Sbjct: 17221 actcgagcagtttcttgaaaactcgcttcagatatgaaactttgagtattgagagatgct 17280 Query: 194 cttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgct 253 ||||||||||||||||||| | || ||| |||||| ||| |||||||| ||||| | Sbjct: 17281 cttgttattcccaataagacgactcggtaacagatcgcttcttccaaagcgcgccccatt 17340 Query: 254 cgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatct 313 ||||| |||||||| | ||| || | ||| || || ||||||||||||||||| Sbjct: 17341 cgttctgctcgcaacaatccaataagttctccgggtgaaaaaacattagacattccatct 17400 Query: 314 tcggaaacccgcacttttgatgttacttggcgtataataatctctatatgtctattatgg 373 || |||||| |||||||||||||| ||| |||| |||||| ||||||||||||||||| Sbjct: 17401 tctgaaaccaacacttttgatgttatttgacgtacaataatttctatatgtctattatga 17460 Query: 374 atctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgactt 433 ||||| ||||| ||||| |||||||||| ||||||||||||||||||||| || || ||| Sbjct: 17461 atctgcaccccctgggagcgataaacctgttggattttattaaccaaagagattcggctt 17520 Query: 434 tgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttggt 493 || ||||| ||||||||||| |||||||||||||||||||| | ||||||||||||| | Sbjct: 17521 tgcgctatagttagctcagcaccaatcaagaatccccaaggaattccaagaattcttgtt 17580 Query: 494 atacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattgaa 553 |||| | |||||| |||||| ||| |||| ||||| ||||| ||||||||| ||| Sbjct: 17581 atacatttgttccaaccctcaaccctcttttctagattcatggatattgaatcaatcgaa 17640 Query: 554 cgc 556 ||| Sbjct: 17641 cgc 17643
>gb|AC093544.8| Medicago truncatula chloroplast, complete genome, complete sequence Length = 124033 Score = 353 bits (178), Expect = 4e-94 Identities = 375/443 (84%) Strand = Plus / Plus Query: 89 cctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaactcgagcagtttct 148 ||||||||||||||||| ||||| || || || |||||||||||||||| |||||||||| Sbjct: 79536 cctttcaaccaatcaatacgaccccgaagagcggcttttgctaaaactctagcagtttct 79595 Query: 149 tgaaaacttgcttcagatatgaaactttgggtattcagggaagcccttgttattcccaat 208 |||||||| ||||| |||||||||||||| |||||||| || | |||||||||||||| Sbjct: 79596 tgaaaactcgcttcggatatgaaactttgagtattcagagatgtttttgttattcccaat 79655 Query: 209 aagattgcccgataatagatcgattcatccaaagctcgccctgctcgttccgctcgcaat 268 || | || || ||| | || | ||| ||||| || ||||| | |||||| ||||||||| Sbjct: 79656 aataaagctcggtaacaaattgcttcttccaaggcacgcccagttcgttctgctcgcaat 79715 Query: 269 agtccgattaattccccaggcnnnnnnncattagacattccatcttcggaaacccgcact 328 | ||| |||||||| || || ||||||||||||||||||| |||||| ||| Sbjct: 79716 aatccaattaattcaccgggtaaaaatacattagacattccatcttctgaaaccaagact 79775 Query: 329 tttgatgttacttggcgtataataatctctatatgtctattatggatctgtaccccttgg 388 || ||||||| ||| || | |||||| || ||||||||||||||||| ||||| || ||| Sbjct: 79776 ttggatgttatttgacgcacaataatttcgatatgtctattatggatgtgtactccctgg 79835 Query: 389 gatcgataaaccttttggattttattaaccaaagaaatacgactttgggctatggttagc 448 ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct: 79836 gatcgataaaccttttggattttattaaccaaagaaatacgactttgcgctatagttagc 79895 Query: 449 tcagctccaatcaagaatccccaagggaccccaagaattcttggtatacgctcattccaa 508 ||||| |||||||||||||||||||| | || |||||||||| ||||| |||||||||| Sbjct: 79896 tcagcaccaatcaagaatccccaaggaatgccgagaattcttgttatacactcattccaa 79955 Query: 509 tcctcaattctcctttcgagatt 531 | |||||||| |||||||||| Sbjct: 79956 gcatcaattcttttttcgagatt 79978
>emb|AM087200.2| Lycopersicon esculentum complete chloroplast genome Length = 155460 Score = 353 bits (178), Expect = 4e-94 Identities = 405/483 (83%) Strand = Plus / Plus Query: 74 acgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaa 133 ||||| ||||||| ||||||||||||||| || ||||| || || || |||||||||||| Sbjct: 16981 acgttctctttcaggcctttcaaccaatcgatacgaccccggagagccgcttttgctaaa 17040 Query: 134 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaagcc 193 |||||||||||||||||||||||||||||||||||||||||||| ||||| || || || Sbjct: 17041 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgagtattgagagatgct 17100 Query: 194 cttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgct 253 ||||||||||||||||||| | || ||| |||||| ||| |||||||| ||||| | Sbjct: 17101 cttgttattcccaataagacgactcggtaacagatcgcttcttccaaagcgcgccccatt 17160 Query: 254 cgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatct 313 ||||| |||||||| | ||| || | ||| || || ||||||||||||||||| Sbjct: 17161 cgttctgctcgcaacaatccaataagttctccgggtgaaaaaacattagacattccatct 17220 Query: 314 tcggaaacccgcacttttgatgttacttggcgtataataatctctatatgtctattatgg 373 || |||| | |||||||||||||| ||| |||| |||||| |||||||| |||||||| Sbjct: 17221 tctgaaatcaacacttttgatgttatttgacgtacaataatttctatatgcctattatga 17280 Query: 374 atctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgactt 433 ||||| ||||| ||||| |||||||||| ||||||||||||||||||||| || || ||| Sbjct: 17281 atctgcaccccctgggagcgataaacctgttggattttattaaccaaagagattcggctt 17340 Query: 434 tgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttggt 493 || ||||| ||||||||||| |||||||||||||||||||| | ||||||||||||||| Sbjct: 17341 tgcgctatagttagctcagcaccaatcaagaatccccaaggaattccaagaattcttggt 17400 Query: 494 atacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattgaa 553 |||| | |||||| |||||| ||| |||| ||||| ||||| ||||||||| ||| Sbjct: 17401 atacatttgttccaaccctcaaccctcttttctagattcatggatattgaatcaatcgaa 17460 Query: 554 cgc 556 ||| Sbjct: 17461 cgc 17463
>gb|DQ347959.1| Lycopersicon esculentum cultivar LA3023 chloroplast, complete genome Length = 155461 Score = 353 bits (178), Expect = 4e-94 Identities = 405/483 (83%) Strand = Plus / Plus Query: 74 acgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaa 133 ||||| ||||||| ||||||||||||||| || ||||| || || || |||||||||||| Sbjct: 16978 acgttctctttcaggcctttcaaccaatcgatacgaccccggagagccgcttttgctaaa 17037 Query: 134 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaagcc 193 |||||||||||||||||||||||||||||||||||||||||||| ||||| || || || Sbjct: 17038 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgagtattgagagatgct 17097 Query: 194 cttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgct 253 ||||||||||||||||||| | || ||| |||||| ||| |||||||| ||||| | Sbjct: 17098 cttgttattcccaataagacgactcggtaacagatcgcttcttccaaagcgcgccccatt 17157 Query: 254 cgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatct 313 ||||| |||||||| | ||| || | ||| || || ||||||||||||||||| Sbjct: 17158 cgttctgctcgcaacaatccaataagttctccgggtgaaaaaacattagacattccatct 17217 Query: 314 tcggaaacccgcacttttgatgttacttggcgtataataatctctatatgtctattatgg 373 || |||| | |||||||||||||| ||| |||| |||||| |||||||| |||||||| Sbjct: 17218 tctgaaatcaacacttttgatgttatttgacgtacaataatttctatatgcctattatga 17277 Query: 374 atctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgactt 433 ||||| ||||| ||||| |||||||||| ||||||||||||||||||||| || || ||| Sbjct: 17278 atctgcaccccctgggagcgataaacctgttggattttattaaccaaagagattcggctt 17337 Query: 434 tgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttggt 493 || ||||| ||||||||||| |||||||||||||||||||| | ||||||||||||||| Sbjct: 17338 tgcgctatagttagctcagcaccaatcaagaatccccaaggaattccaagaattcttggt 17397 Query: 494 atacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattgaa 553 |||| | |||||| |||||| ||| |||| ||||| ||||| ||||||||| ||| Sbjct: 17398 atacatttgttccaaccctcaaccctcttttctagattcatggatattgaatcaatcgaa 17457 Query: 554 cgc 556 ||| Sbjct: 17458 cgc 17460
>gb|AY757830.1|AY757829S2 Acorus gramineus RpoC2 (rpoC2) gene, partial cds; chloroplast Length = 1809 Score = 349 bits (176), Expect = 6e-93 Identities = 364/429 (84%) Strand = Plus / Minus Query: 68 agaactacgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagctttt 127 ||||| ||||| ||||||| ||||||||||||||||| ||||| ||||| || |||||| Sbjct: 1592 agaacaacgttctctttcaggcctttcaaccaatcaacacgaccccgtagagccgctttt 1533 Query: 128 gctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagg 187 || |||||||||||||||||||||||||| ||||| |||||||||||||| ||||||| Sbjct: 1532 gccaaaactcgagcagtttcttgaaaactcgcttcggatatgaaactttgagtattcaaa 1473 Query: 188 gaagcccttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgc 247 || || ||||||||||||||||||||||| |||||| ||||| ||| |||||||| || Sbjct: 1472 gacgctcttgttattcccaataagattgctcgataacggatcgcttcttccaaagcgcga 1413 Query: 248 cctgctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacatt 307 |||| ||||||||| ||||| | |||||| | ||| || || ||||||||||| Sbjct: 1412 cctgttcgttccgcccgcaacaatccgataagttctcccggtgaaaaaacattagacatt 1353 Query: 308 ccatcttcggaaacccgcacttttgatgttacttggcgtataataatctctatatgtcta 367 |||||||| |||||| |||||||||||||| ||| |||| ||||||||||||||| || Sbjct: 1352 ccatcttctgaaaccaacacttttgatgttatttgacgtacaataatctctatatgctta 1293 Query: 368 ttatggatctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaata 427 ||||| ||||| ||||| || ||||||||||| |||||||| |||||||||||||| ||| Sbjct: 1292 ttatgaatctgcaccccctgagatcgataaactttttggatcttattaaccaaagagata 1233 Query: 428 cgactttgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaatt 487 |||||||| |||||||||| ||| || || |||||||||||||| || | ||||||||| Sbjct: 1232 cgactttgcgctatggttaactcggcgccgatcaagaatccccagggaattccaagaatt 1173 Query: 488 cttggtata 496 ||| |||| Sbjct: 1172 tttgttata 1164
>gb|DQ386163.1| Solanum tuberosum cultivar Desiree chloroplast, complete genome Length = 155298 Score = 347 bits (175), Expect = 2e-92 Identities = 360/424 (84%) Strand = Plus / Plus Query: 74 acgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaa 133 ||||| ||||||| ||||||||||||||| || ||||| || || || |||||||||||| Sbjct: 17123 acgttctctttcaggcctttcaaccaatcgatacgaccccggagagccgcttttgctaaa 17182 Query: 134 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaagcc 193 |||||||||||||||||||||||||||||||||||||||||||| ||||| || || || Sbjct: 17183 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgagtattgagagatgct 17242 Query: 194 cttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgct 253 ||||||||||||||||||| | || ||| |||||| ||| |||||||| ||||| | Sbjct: 17243 cttgttattcccaataagacgactcggtaacagatcgcttcttccaaagcgcgccccatt 17302 Query: 254 cgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatct 313 ||||| |||||||| | ||| || | ||| || || ||||||||||||||||| Sbjct: 17303 cgttctgctcgcaacaatccaataagttctccgggtgaaaaaacattagacattccatct 17362 Query: 314 tcggaaacccgcacttttgatgttacttggcgtataataatctctatatgtctattatgg 373 || |||| | |||||||||||||| ||| |||| |||||| |||||||| |||||||| Sbjct: 17363 tctgaaatcaacacttttgatgttatttgacgtacaataatttctatatgcctattatga 17422 Query: 374 atctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgactt 433 ||||| ||||| ||||| |||||||||| ||||||||||||||||||||| || || ||| Sbjct: 17423 atctgcaccccctgggagcgataaacctgttggattttattaaccaaagagattcggctt 17482 Query: 434 tgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttggt 493 || ||||| ||||||||||| |||||||||||||||||||| | ||||||||||||||| Sbjct: 17483 tgcgctatagttagctcagcaccaatcaagaatccccaaggaattccaagaattcttggt 17542 Query: 494 atac 497 |||| Sbjct: 17543 atac 17546
>gb|DQ347958.1| Solanum bulbocastanum cultivar PT29 chloroplast, complete genome Length = 155371 Score = 347 bits (175), Expect = 2e-92 Identities = 360/424 (84%) Strand = Plus / Plus Query: 74 acgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaa 133 ||||| ||||||| ||||||||||||||| || ||||| || || || |||||||||||| Sbjct: 17011 acgttctctttcaggcctttcaaccaatcgatacgaccccggagagccgcttttgctaaa 17070 Query: 134 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaagcc 193 |||||||||||||||||||||||||||||||||||||||||||| ||||| || || || Sbjct: 17071 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgagtattgagagatgct 17130 Query: 194 cttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgct 253 ||||||||||||||||||| | || ||| |||||| ||| |||||||| ||||| | Sbjct: 17131 cttgttattcccaataagacgactcggtaacagatcgcttcttccaaagcgcgccccatt 17190 Query: 254 cgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatct 313 ||||| |||||||| | ||| || | ||| || || ||||||||||||||||| Sbjct: 17191 cgttctgctcgcaacaatccaataagttctccgggtgaaaaaacattagacattccatct 17250 Query: 314 tcggaaacccgcacttttgatgttacttggcgtataataatctctatatgtctattatgg 373 || |||| | |||||||||||||| ||| |||| |||||| |||||||| |||||||| Sbjct: 17251 tctgaaatcaacacttttgatgttatttgacgtacaataatttctatatgcctattatga 17310 Query: 374 atctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgactt 433 ||||| ||||| ||||| |||||||||| ||||||||||||||||||||| || || ||| Sbjct: 17311 atctgcaccccctgggagcgataaacctgttggattttattaaccaaagagattcggctt 17370 Query: 434 tgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttggt 493 || ||||| ||||||||||| |||||||||||||||||||| | ||||||||||||||| Sbjct: 17371 tgcgctatagttagctcagcaccaatcaagaatccccaaggaattccaagaattcttggt 17430 Query: 494 atac 497 |||| Sbjct: 17431 atac 17434
>gb|DQ231562.1| Solanum tuberosum chloroplast, complete genome Length = 155312 Score = 347 bits (175), Expect = 2e-92 Identities = 360/424 (84%) Strand = Plus / Plus Query: 74 acgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaa 133 ||||| ||||||| ||||||||||||||| || ||||| || || || |||||||||||| Sbjct: 17123 acgttctctttcaggcctttcaaccaatcgatacgaccccggagagccgcttttgctaaa 17182 Query: 134 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaagcc 193 |||||||||||||||||||||||||||||||||||||||||||| ||||| || || || Sbjct: 17183 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgagtattgagagatgct 17242 Query: 194 cttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgct 253 ||||||||||||||||||| | || ||| |||||| ||| |||||||| ||||| | Sbjct: 17243 cttgttattcccaataagacgactcggtaacagatcgcttcttccaaagcgcgccccatt 17302 Query: 254 cgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatct 313 ||||| |||||||| | ||| || | ||| || || ||||||||||||||||| Sbjct: 17303 cgttctgctcgcaacaatccaataagttctccgggtgaaaaaacattagacattccatct 17362 Query: 314 tcggaaacccgcacttttgatgttacttggcgtataataatctctatatgtctattatgg 373 || |||| | |||||||||||||| ||| |||| |||||| |||||||| |||||||| Sbjct: 17363 tctgaaatcaacacttttgatgttatttgacgtacaataatttctatatgcctattatga 17422 Query: 374 atctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgactt 433 ||||| ||||| ||||| |||||||||| ||||||||||||||||||||| || || ||| Sbjct: 17423 atctgcaccccctgggagcgataaacctgttggattttattaaccaaagagattcggctt 17482 Query: 434 tgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttggt 493 || ||||| ||||||||||| |||||||||||||||||||| | ||||||||||||||| Sbjct: 17483 tgcgctatagttagctcagcaccaatcaagaatccccaaggaattccaagaattcttggt 17542 Query: 494 atac 497 |||| Sbjct: 17543 atac 17546
>dbj|AB240139.1| Nicotiana tomentosiformis chloroplast DNA, complete sequence Length = 155745 Score = 345 bits (174), Expect = 1e-91 Identities = 404/483 (83%) Strand = Plus / Plus Query: 74 acgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaa 133 ||||| ||||||| ||||||||||||||| || ||||| || || || |||||||||||| Sbjct: 17340 acgttctctttcaggcctttcaaccaatcgatacgaccccgaagagccgcttttgctaaa 17399 Query: 134 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaagcc 193 ||||||||||| ||||||||||| |||||||||||||||||||| ||||| || || || Sbjct: 17400 actcgagcagtctcttgaaaactcgcttcagatatgaaactttgagtattgagagatgct 17459 Query: 194 cttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgct 253 ||||||||||||||||||| | || ||| |||||| ||| |||||||| ||||| | Sbjct: 17460 cttgttattcccaataagacgactcggtaacagatcgcttcttccaaagcgcgccccatt 17519 Query: 254 cgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatct 313 ||||| |||||||| | ||| || | ||| || || ||||||||||||||||| Sbjct: 17520 cgttctgctcgcaacaatccaataagttctccgggtgaaaaaacattagacattccatct 17579 Query: 314 tcggaaacccgcacttttgatgttacttggcgtataataatctctatatgtctattatgg 373 || |||||| |||||||||||||| ||| |||| |||||| |||||||| |||||||| Sbjct: 17580 tctgaaaccaacacttttgatgttatttgacgtacaataatttctatatgcctattatga 17639 Query: 374 atctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgactt 433 ||||| ||||| ||||| |||||||||| ||||||||||||||||||||| || || ||| Sbjct: 17640 atctgcaccccctgggagcgataaacctgttggattttattaaccaaagagattcggctt 17699 Query: 434 tgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttggt 493 || ||||| ||||||||||| |||||||||||||||||||| | ||||||||||||| | Sbjct: 17700 tgcgctatagttagctcagcaccaatcaagaatccccaaggaattccaagaattcttgtt 17759 Query: 494 atacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattgaa 553 |||| | |||||| ||||||| ||| |||| ||||| ||||| ||||||||| ||| Sbjct: 17760 atacatttgttccaaccctcaatcctcttttctagattcatggatattgaatcaatcgaa 17819 Query: 554 cgc 556 ||| Sbjct: 17820 cgc 17822
>emb|AJ627251.1| Nymphaea alba chloroplast, complete genome Length = 159930 Score = 341 bits (172), Expect = 1e-90 Identities = 368/438 (84%) Strand = Plus / Plus Query: 37 gaatccggtaccaacaggtataatnnnnnnnagaactacgttttctttcaagcctttcaa 96 ||||||||||||||| ||||| || ||||| || || ||||||| |||||||| Sbjct: 18709 gaatccggtaccaacgggtatcatcccccccagaacaacattctctttcagacctttcaa 18768 Query: 97 ccaatcaatgcgacctcgtagggcagcttttgctaaaactcgagcagtttcttgaaaact 156 ||||||||| ||||| || || || |||||||||||||||||||| ||||| |||||||| Sbjct: 18769 ccaatcaatacgaccccggagagcggcttttgctaaaactcgagcggtttcctgaaaact 18828 Query: 157 tgcttcagatatgaaactttgggtattcagggaagcccttgttattcccaataagattgc 216 ||||| |||||||||||||| |||||||| || || || |||||||||||||||| || Sbjct: 18829 agcttctgatatgaaactttgagtattcagagatgctctcgttattcccaataagacggc 18888 Query: 217 ccgataatagatcgattcatccaaagctcgccctgctcgttccgctcgcaatagtccgat 276 || ||| | || | || |||||||| || ||||||||||| |||||||| | |||||| Sbjct: 18889 tcggtaacaaatagcctcttccaaagcacgacctgctcgttctgctcgcaacaatccgat 18948 Query: 277 taattccccaggcnnnnnnncattagacattccatcttcggaaacccgcacttttgatgt 336 || |||||| || ||||||||||||||||||| |||||| |||||||||||| Sbjct: 18949 tagttccccgggtgaaaaaacattagacattccatcttctgaaaccaacacttttgatgt 19008 Query: 337 tacttggcgtataataatctctatatgtctattatggatctgtaccccttgggatcgata 396 || ||| |||| ||||||||||||||| ||||||| ||||||||||| ||||||||||| Sbjct: 19009 tatttgtcgtacaataatctctatatgcttattatgaatctgtaccccctgggatcgata 19068 Query: 397 aaccttttggattttattaaccaaagaaatacgactttgggctatggttagctcagctcc 456 |||||||||||| |||||||||||||||| ||||||||| |||||||| || ||||| || Sbjct: 19069 aaccttttggatcttattaaccaaagaaacacgactttgcgctatggtgagttcagcacc 19128 Query: 457 aatcaagaatccccaagg 474 ||||| |||||||||||| Sbjct: 19129 aatcaggaatccccaagg 19146
>emb|Z00044.2|CHNTXX Nicotiana tabacum chloroplast genome DNA Length = 155943 Score = 337 bits (170), Expect = 2e-89 Identities = 397/475 (83%) Strand = Plus / Plus Query: 74 acgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaa 133 ||||| ||||||| ||||||||||||||| || ||||| || || || |||||||||||| Sbjct: 17390 acgttctctttcaggcctttcaaccaatcgatacgaccccggagagccgcttttgctaaa 17449 Query: 134 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaagcc 193 ||||||||||||||||||||||| |||||||||||||||||||| ||||| || || || Sbjct: 17450 actcgagcagtttcttgaaaactcgcttcagatatgaaactttgagtattgagagatgct 17509 Query: 194 cttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgct 253 ||||||||||||||||||| | || ||| |||||| ||| |||||||| ||||| | Sbjct: 17510 cttgttattcccaataagacgactcggtaacagatcgcttcttccaaagcgcgccccatt 17569 Query: 254 cgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatct 313 ||||| |||||||| | ||| || | ||| || || ||||||||||||||||| Sbjct: 17570 cgttctgctcgcaacaatccaataagttctccgggtgaaaaaacattagacattccatct 17629 Query: 314 tcggaaacccgcacttttgatgttacttggcgtataataatctctatatgtctattatgg 373 || |||||| |||||||||||||| ||| |||| |||||| |||| ||| |||||||| Sbjct: 17630 tctgaaaccaacacttttgatgttatttgacgtacaataatttctagatgcctattatga 17689 Query: 374 atctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgactt 433 ||||| ||||| ||||| |||||||||| ||||||||||||||||||||| || || ||| Sbjct: 17690 atctgcaccccctgggagcgataaacctgttggattttattaaccaaagagattcggctt 17749 Query: 434 tgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttggt 493 || ||||| ||||||||||| |||||||||||||||||||| | ||||||||||||| | Sbjct: 17750 tgcgctatagttagctcagcaccaatcaagaatccccaaggaattccaagaattcttgtt 17809 Query: 494 atacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaa 548 |||| | |||||| ||||||| ||| |||| ||||| ||||| |||||||| Sbjct: 17810 atacatttgttccaaccctcaatcctcttttctagattcatggatattgaatcaa 17864
>dbj|AB237912.1| Nicotiana sylvestris chloroplast DNA, complete sequence Length = 155941 Score = 337 bits (170), Expect = 2e-89 Identities = 397/475 (83%) Strand = Plus / Plus Query: 74 acgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaa 133 ||||| ||||||| ||||||||||||||| || ||||| || || || |||||||||||| Sbjct: 17388 acgttctctttcaggcctttcaaccaatcgatacgaccccggagagccgcttttgctaaa 17447 Query: 134 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaagcc 193 ||||||||||||||||||||||| |||||||||||||||||||| ||||| || || || Sbjct: 17448 actcgagcagtttcttgaaaactcgcttcagatatgaaactttgagtattgagagatgct 17507 Query: 194 cttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgct 253 ||||||||||||||||||| | || ||| |||||| ||| |||||||| ||||| | Sbjct: 17508 cttgttattcccaataagacgactcggtaacagatcgcttcttccaaagcgcgccccatt 17567 Query: 254 cgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatct 313 ||||| |||||||| | ||| || | ||| || || ||||||||||||||||| Sbjct: 17568 cgttctgctcgcaacaatccaataagttctccgggtgaaaaaacattagacattccatct 17627 Query: 314 tcggaaacccgcacttttgatgttacttggcgtataataatctctatatgtctattatgg 373 || |||||| |||||||||||||| ||| |||| |||||| |||| ||| |||||||| Sbjct: 17628 tctgaaaccaacacttttgatgttatttgacgtacaataatttctagatgcctattatga 17687 Query: 374 atctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgactt 433 ||||| ||||| ||||| |||||||||| ||||||||||||||||||||| || || ||| Sbjct: 17688 atctgcaccccctgggagcgataaacctgttggattttattaaccaaagagattcggctt 17747 Query: 434 tgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttggt 493 || ||||| ||||||||||| |||||||||||||||||||| | ||||||||||||| | Sbjct: 17748 tgcgctatagttagctcagcaccaatcaagaatccccaaggaattccaagaattcttgtt 17807 Query: 494 atacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaa 548 |||| | |||||| ||||||| ||| |||| ||||| ||||| |||||||| Sbjct: 17808 atacatttgttccaaccctcaatcctcttttctagattcatggatattgaatcaa 17862
>gb|DQ383815.1| Helianthus annuus cultivar line HA383 chloroplast, complete genome Length = 151104 Score = 333 bits (168), Expect = 4e-88 Identities = 407/489 (83%) Strand = Plus / Minus Query: 68 agaactacgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagctttt 127 ||||| ||||||||||| | ||||||||||||||| || || ||| | || || |||||| Sbjct: 23135 agaacaacgttttcttttaggcctttcaaccaatcgatacgccctaggagagctgctttt 23076 Query: 128 gctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagg 187 |||||||||||||| |||||||||||||| ||||| |||||||||||||| ||||||| | Sbjct: 23075 gctaaaactcgagcggtttcttgaaaactcgcttcggatatgaaactttgagtattcatg 23016 Query: 188 gaagcccttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgc 247 || || ||||||||||||||||||| || | ||| |||||| ||| |||||||| ||| Sbjct: 23015 gatgctcttgttattcccaataagacggcttggtaacagatcgcttcttccaaagcgcgc 22956 Query: 248 cctgctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacatt 307 || ||||||||||||||| | ||| |||| ||| || ||| ||||||||||| Sbjct: 22955 cccattcgttccgctcgcaacaatccaattagttctccgggcgaaaaaacattagacatt 22896 Query: 308 ccatcttcggaaacccgcacttttgatgttacttggcgtataataatctctatatgtcta 367 ||||||| |||||| |||||||||||||| ||| |||| |||||| |||||||| ||| Sbjct: 22895 tcatcttctgaaaccaacacttttgatgttatttgacgtacaataatttctatatgccta 22836 Query: 368 ttatggatctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaata 427 ||||| ||||| ||||| |||||||||||||||||||||| |||||||||||||| ||| Sbjct: 22835 ttatgtatctgcaccccctgggatcgataaaccttttggaccttattaaccaaagagata 22776 Query: 428 cgactttgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaatt 487 |||||||| |||| ||||||| ||| ||||| |||||| ||||||| | ||||||||| Sbjct: 22775 cgactttgcactatagttagcttagcaccaataaagaatgcccaaggaattccaagaatt 22716 Query: 488 cttggtatacgctcattccaatcctcaattctcctttcgagattgggggataatgaatca 547 |||| ||||| | |||||| ||||||| ||| |||| ||||| |||| ||||||| Sbjct: 22715 cttgttatacatttgttccaaccctcaatcctcttttcaagattcatcgatattgaatca 22656 Query: 548 attgaacgc 556 || |||||| Sbjct: 22655 atcgaacgc 22647
>emb|AJ271079.2|OEL271079 Oenothera elata subsp. hookeri chloroplast plastome I, complete sequence Length = 163935 Score = 327 bits (165), Expect = 2e-86 Identities = 371/442 (83%) Strand = Plus / Minus Query: 74 acgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaa 133 ||||| ||||| | |||||||||||||||||| ||||| || || || ||||| |||||| Sbjct: 49487 acgttctcttttaggcctttcaaccaatcaatacgaccccggagagccgctttagctaaa 49428 Query: 134 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaagcc 193 ||||||||||||||||||||||| ||||| |||||||||||||| ||||||| || | Sbjct: 49427 actcgagcagtttcttgaaaactcgcttcggatatgaaactttgagtattcaaagatgtt 49368 Query: 194 cttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgct 253 |||||||||||||||| || ||| ||| |||||||||| |||||||| ||||| | Sbjct: 49367 cttgttattcccaataggaaggccttgtaacagatcgattcttccaaagcgcgccccgtc 49308 Query: 254 cgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatct 313 |||||||||||||| | ||| |||| ||| | ||| |||||||||||||||| Sbjct: 49307 cgttccgctcgcaacaatccaattagttctctaggtaaaaaaacattagacattccatcc 49248 Query: 314 tcggaaacccgcacttttgatgttacttggcgtataataatctctatatgtctattatgg 373 || |||||| |||||| ||||||| |||||||| |||||| || || || ||||||||| Sbjct: 49247 tctgaaaccaacactttggatgttatttggcgtacaataatttcgatgtgcctattatgg 49188 Query: 374 atctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgactt 433 || || ||||| ||||||||||||||||||||||| |||||||||||||| || |||||| Sbjct: 49187 atttggaccccctgggatcgataaaccttttggatcttattaaccaaagagatccgactt 49128 Query: 434 tgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttggt 493 || |||| ||||||||||| |||||||||||||||||||| | ||||||||||||| | Sbjct: 49127 tgcactatagttagctcagccccaatcaagaatccccaaggaaatccaagaattcttgtt 49068 Query: 494 atacgctcattccaatcctcaa 515 ||| |||| ||||||| ||||| Sbjct: 49067 atatgctcgttccaattctcaa 49046
>dbj|AP000423.1| Arabidopsis thaliana chloroplast genomic DNA, complete sequence, strain:Columbia Length = 154478 Score = 319 bits (161), Expect = 5e-84 Identities = 361/430 (83%) Strand = Plus / Plus Query: 68 agaactacgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagctttt 127 ||||| || |||||||||| ||||||||||||||| || ||||| || || ||||||||| Sbjct: 16131 agaacaacattttctttcaggcctttcaaccaatcgatacgaccccgaagagcagctttt 16190 Query: 128 gctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagg 187 ||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||| Sbjct: 16191 gctaaaactcgagcagtttcttgaaaacttgcttcggatataaaactttgagtattcaaa 16250 Query: 188 gaagcccttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgc 247 || || | |||||||| ||||| | || |||||| |||| | ||| || ||||| ||| Sbjct: 16251 gatgctcgagttattcctaataaaacggctcgataacagattgcttcttctaaagcacgc 16310 Query: 248 cctgctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacatt 307 || | |||||| ||||| |||| ||| || | ||| ||||| ||||||||||| Sbjct: 16311 cccgttcgttctgctcgtaataatccaataagttctccaggtaaaaaaacattagacatt 16370 Query: 308 ccatcttcggaaacccgcacttttgatgttacttggcgtataataatctctatatgtcta 367 || |||||||||||| ||||||||||||| ||| |||| |||||| || ||||| ||| Sbjct: 16371 ccctcttcggaaaccaaaacttttgatgttatttgacgtacaataatttcgatatgccta 16430 Query: 368 ttatggatctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaata 427 ||||| ||||| ||||| |||||||||||||||||||| || |||||||||||||||||| Sbjct: 16431 ttatgaatctgcaccccctgggatcgataaaccttttgaatcttattaaccaaagaaata 16490 Query: 428 cgactttgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaatt 487 |||||||| |||| |||| |||||| |||||||||||||||||||| | ||||||||| Sbjct: 16491 cgactttgcactatagttaactcagcaccaatcaagaatccccaaggaattccaagaatt 16550 Query: 488 cttggtatac 497 |||| ||||| Sbjct: 16551 cttgttatac 16560
>dbj|AB189069.1| Silene latifolia chloroplast DNA, partial sequence, rpoB gene to rps7 gene region Length = 47249 Score = 315 bits (159), Expect = 9e-83 Identities = 386/464 (83%) Strand = Plus / Minus Query: 68 agaactacgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagctttt 127 ||||| ||||||||||| || ||||||||||||||||| || ||||| || ||||||||| Sbjct: 11213 agaacaacgttttcttttaatcctttcaaccaatcaatacggcctcggagagcagctttt 11154 Query: 128 gctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagg 187 ||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| Sbjct: 11153 gctaaaactcgagcagtttcttgaaaacttgcttcggatataaaactttgagtattcaga 11094 Query: 188 gaagcccttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgc 247 || || || ||||||||||||||||| | || ||| |||||| ||| |||||||| ||| Sbjct: 11093 gatgctctcgttattcccaataagatcgttcggtaacagatcgcttcttccaaagcgcgc 11034 Query: 248 cctgctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacatt 307 || | |||||| ||||| || | ||| || | ||| || ||| |||||||||| Sbjct: 11033 cccgttcgttctgctcgaaacaatccaatgagttctccgggcaaaaaaatattagacatt 10974 Query: 308 ccatcttcggaaacccgcacttttgatgttacttggcgtataataatctctatatgtcta 367 ||||| || |||||| ||||| ||||||| ||| |||| |||||| || ||||| | | Sbjct: 10973 ccatcctctgaaaccaagactttagatgttatttgccgtacaataatttcgatatgccga 10914 Query: 368 ttatggatctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaata 427 | ||| ||||| ||||| ||||||||||||||||||||||| |||||||||||||| ||| Sbjct: 10913 tcatgaatctgcaccccctgggatcgataaaccttttggatcttattaaccaaagagata 10854 Query: 428 cgactttgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaatt 487 |||||||| ||||| ||||||||||| |||| |||||||||||| || | ||||||||| Sbjct: 10853 cgactttgcgctatagttagctcagccccaaccaagaatccccacggaattccaagaatt 10794 Query: 488 cttggtatacgctcattccaatcctcaattctcctttcgagatt 531 || |||||| || |||||| | | ||| ||| |||||||||| Sbjct: 10793 ttttttatacgttcgttccaaccattaatcctcttttcgagatt 10750
>gb|AC146587.20| Medicago truncatula clone mth2-144j8, complete sequence Length = 113373 Score = 313 bits (158), Expect = 3e-82 Identities = 352/419 (84%) Strand = Plus / Minus Query: 90 ctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaactcgagcagtttctt 149 |||||||||||||||| ||||| || || || |||||||||||||||| ||||||||||| Sbjct: 23975 ctttcaaccaatcaatacgaccccgaagagcggcttttgctaaaactctagcagtttctt 23916 Query: 150 gaaaacttgcttcagatatgaaactttgggtattcagggaagcccttgttattcccaata 209 ||||||| ||||| |||||||||||||| |||||||| || | ||||||||||||||| Sbjct: 23915 gaaaactcgcttcggatatgaaactttgagtattcagagatgtttttgttattcccaata 23856 Query: 210 agattgcccgataatagatcgattcatccaaagctcgccctgctcgttccgctcgcaata 269 | | || || ||| | || | ||| ||||| || ||||| | |||||| |||||||||| Sbjct: 23855 ataaagctcggtaacaaattgcttcttccaaggcacgcccagttcgttctgctcgcaata 23796 Query: 270 gtccgattaattccccaggcnnnnnnncattagacattccatcttcggaaacccgcactt 329 ||| |||||||| ||||| ||||| ||||||||||||| || ||| |||| Sbjct: 23795 atccaattaattcaccaggtaaaaatacattaaacattccatcttctgagaccaagactt 23736 Query: 330 ttgatgttacttggcgtataataatctctatatgtctattatggatctgtaccccttggg 389 | ||||| | ||| || | |||||| || ||||||||||||||||| ||||| || |||| Sbjct: 23735 tggatgtcatttgacgcacaataatttcgatatgtctattatggatgtgtactccctggg 23676 Query: 390 atcgataaaccttttggattttattaaccaaagaaatacgactttgggctatggttagct 449 |||||||||||||||||||||||||||||||||||||||||||||| || || ||||||| Sbjct: 23675 atcgataaaccttttggattttattaaccaaagaaatacgactttgcgcgatagttagct 23616 Query: 450 cagctccaatcaagaatccccaagggaccccaagaattcttggtatacgctcattccaa 508 |||| |||||||||||||||||||| | || |||||||||| ||||| |||||||||| Sbjct: 23615 cagcaccaatcaagaatccccaaggaatgccgagaattcttgttatacactcattccaa 23557
>gb|AC145457.1| Cicer arietinum strain FLIP84-92C clone gl1-40c9, complete sequence Length = 23359 Score = 311 bits (157), Expect = 1e-81 Identities = 360/430 (83%) Strand = Plus / Plus Query: 89 cctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaactcgagcagtttct 148 ||||||||||||||||| ||||| || || || |||||||||||||||| |||||||||| Sbjct: 618 cctttcaaccaatcaatacgaccccgaagagcggcttttgctaaaactctagcagtttct 677 Query: 149 tgaaaacttgcttcagatatgaaactttgggtattcagggaagcccttgttattcccaat 208 |||||||| ||||| |||||||||||||| ||||| || || | |||||||||||||| Sbjct: 678 tgaaaactcgcttcggatatgaaactttgagtatttagagatgtttttgttattcccaat 737 Query: 209 aagattgcccgataatagatcgattcatccaaagctcgccctgctcgttccgctcgcaat 268 || | || || ||| | || | ||| ||||| || ||||| | |||||| ||||||||| Sbjct: 738 aataaagctcggtaacaaattgcttcttccaatgcacgccccgttcgttctgctcgcaat 797 Query: 269 agtccgattaattccccaggcnnnnnnncattagacattccatcttcggaaacccgcact 328 | ||| || | |||||| || ||||||||||||||||||| |||||| ||| Sbjct: 798 aatccaatgagttccccgggtaaaaatacattagacattccatcttccgaaaccaatact 857 Query: 329 tttgatgttacttggcgtataataatctctatatgtctattatggatctgtaccccttgg 388 || ||||||| ||| || | |||||| || ||||||||||||||||| ||||| || ||| Sbjct: 858 ttggatgttatttgacgcacaataatttcgatatgtctattatggatgtgtactccctgg 917 Query: 389 gatcgataaaccttttggattttattaaccaaagaaatacgactttgggctatggttagc 448 ||||||||||||||||| |||||||||||||||||||| |||||||| ||||| |||||| Sbjct: 918 gatcgataaaccttttgtattttattaaccaaagaaatgcgactttgcgctatagttagc 977 Query: 449 tcagctccaatcaagaatccccaagggaccccaagaattcttggtatacgctcattccaa 508 ||||| |||||||||||||||||||| | || |||||||||||||||| ||| |||||| Sbjct: 978 tcagcaccaatcaagaatccccaaggaataccgagaattcttggtatacactcgttccaa 1037 Query: 509 tcctcaattc 518 | ||||||| Sbjct: 1038 gcatcaattc 1047
>gb|DQ383816.1| Lactuca sativa cultivar Salinas chloroplast, complete genome Length = 152772 Score = 309 bits (156), Expect = 5e-81 Identities = 404/489 (82%) Strand = Plus / Minus Query: 68 agaactacgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagctttt 127 ||||| ||||||||||||| ||||||||||||||| || || || | || || |||||| Sbjct: 23075 agaacaacgttttctttcaggcctttcaaccaatcgatacggcccaggagagctgctttt 23016 Query: 128 gctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagg 187 |||||||||| |||||||||||||||||| ||||| |||||||||||||| ||||||| Sbjct: 23015 gctaaaactctagcagtttcttgaaaactagcttcggatatgaaactttgagtattcata 22956 Query: 188 gaagcccttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgc 247 || || ||||||||||||||||||| || | ||| |||||| ||| |||||||| || Sbjct: 22955 gatgctcttgttattcccaataagacggcttggtaacagatcgcttcttccaaagcgcgt 22896 Query: 248 cctgctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacatt 307 || ||||||||||||||| | ||| |||| ||| || ||| ||||||||||| Sbjct: 22895 cccattcgttccgctcgcaacaatccaattagttctccgggcgaaaaaacattagacatt 22836 Query: 308 ccatcttcggaaacccgcacttttgatgttacttggcgtataataatctctatatgtcta 367 ||||||| |||||| ||||||||||||| ||| |||| |||||| |||||||| ||| Sbjct: 22835 tcatcttctgaaaccaaaacttttgatgttatttgacgtacaataatttctatatgccta 22776 Query: 368 ttatggatctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaata 427 ||||| ||||| ||||| ||||| |||||||||||||||| |||||||||||||| ||| Sbjct: 22775 ttatgtatctgcaccccctgggagcgataaaccttttggaccttattaaccaaagagata 22716 Query: 428 cgactttgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaatt 487 |||||||| |||| ||||| ||||| |||||||||||| ||||||| | ||||||||| Sbjct: 22715 cgactttgcactatagttagttcagcaccaatcaagaatgcccaaggaattccaagaatt 22656 Query: 488 cttggtatacgctcattccaatcctcaattctcctttcgagattgggggataatgaatca 547 |||| |||| | |||||| ||||||| ||| |||||||||| |||| ||||||| Sbjct: 22655 cttgttatagatttgttccaaccctcaatcctcttttcgagattcatcgatattgaatca 22596 Query: 548 attgaacgc 556 || |||||| Sbjct: 22595 atcgaacgc 22587
>gb|AY865171.1| Lactuca sativa chloroplast inversion region Length = 28722 Score = 309 bits (156), Expect = 5e-81 Identities = 404/489 (82%) Strand = Plus / Minus Query: 68 agaactacgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagctttt 127 ||||| ||||||||||||| ||||||||||||||| || || || | || || |||||| Sbjct: 17015 agaacaacgttttctttcaggcctttcaaccaatcgatacggcccaggagagctgctttt 16956 Query: 128 gctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagg 187 |||||||||| |||||||||||||||||| ||||| |||||||||||||| ||||||| Sbjct: 16955 gctaaaactctagcagtttcttgaaaactagcttcggatatgaaactttgagtattcata 16896 Query: 188 gaagcccttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgc 247 || || ||||||||||||||||||| || | ||| |||||| ||| |||||||| || Sbjct: 16895 gatgctcttgttattcccaataagacggcttggtaacagatcgcttcttccaaagcgcgt 16836 Query: 248 cctgctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacatt 307 || ||||||||||||||| | ||| |||| ||| || ||| ||||||||||| Sbjct: 16835 cccattcgttccgctcgcaacaatccaattagttctccgggcgaaaaaacattagacatt 16776 Query: 308 ccatcttcggaaacccgcacttttgatgttacttggcgtataataatctctatatgtcta 367 ||||||| |||||| ||||||||||||| ||| |||| |||||| |||||||| ||| Sbjct: 16775 tcatcttctgaaaccaaaacttttgatgttatttgacgtacaataatttctatatgccta 16716 Query: 368 ttatggatctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaata 427 ||||| ||||| ||||| ||||| |||||||||||||||| |||||||||||||| ||| Sbjct: 16715 ttatgtatctgcaccccctgggagcgataaaccttttggaccttattaaccaaagagata 16656 Query: 428 cgactttgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaatt 487 |||||||| |||| ||||| ||||| |||||||||||| ||||||| | ||||||||| Sbjct: 16655 cgactttgcactatagttagttcagcaccaatcaagaatgcccaaggaattccaagaatt 16596 Query: 488 cttggtatacgctcattccaatcctcaattctcctttcgagattgggggataatgaatca 547 |||| |||| | |||||| ||||||| ||| |||||||||| |||| ||||||| Sbjct: 16595 cttgttatagatttgttccaaccctcaatcctcttttcgagattcatcgatattgaatca 16536 Query: 548 attgaacgc 556 || |||||| Sbjct: 16535 atcgaacgc 16527
>dbj|AP007232.1| Lactuca sativa chloroplast DNA, complete genome Length = 152765 Score = 309 bits (156), Expect = 5e-81 Identities = 404/489 (82%) Strand = Plus / Minus Query: 68 agaactacgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagctttt 127 ||||| ||||||||||||| ||||||||||||||| || || || | || || |||||| Sbjct: 23075 agaacaacgttttctttcaggcctttcaaccaatcgatacggcccaggagagctgctttt 23016 Query: 128 gctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagg 187 |||||||||| |||||||||||||||||| ||||| |||||||||||||| ||||||| Sbjct: 23015 gctaaaactctagcagtttcttgaaaactagcttcggatatgaaactttgagtattcata 22956 Query: 188 gaagcccttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgc 247 || || ||||||||||||||||||| || | ||| |||||| ||| |||||||| || Sbjct: 22955 gatgctcttgttattcccaataagacggcttggtaacagatcgcttcttccaaagcgcgt 22896 Query: 248 cctgctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacatt 307 || ||||||||||||||| | ||| |||| ||| || ||| ||||||||||| Sbjct: 22895 cccattcgttccgctcgcaacaatccaattagttctccgggcgaaaaaacattagacatt 22836 Query: 308 ccatcttcggaaacccgcacttttgatgttacttggcgtataataatctctatatgtcta 367 ||||||| |||||| ||||||||||||| ||| |||| |||||| |||||||| ||| Sbjct: 22835 tcatcttctgaaaccaaaacttttgatgttatttgacgtacaataatttctatatgccta 22776 Query: 368 ttatggatctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaata 427 ||||| ||||| ||||| ||||| |||||||||||||||| |||||||||||||| ||| Sbjct: 22775 ttatgtatctgcaccccctgggagcgataaaccttttggaccttattaaccaaagagata 22716 Query: 428 cgactttgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaatt 487 |||||||| |||| ||||| ||||| |||||||||||| ||||||| | ||||||||| Sbjct: 22715 cgactttgcactatagttagttcagcaccaatcaagaatgcccaaggaattccaagaatt 22656 Query: 488 cttggtatacgctcattccaatcctcaattctcctttcgagattgggggataatgaatca 547 |||| |||| | |||||| ||||||| ||| |||||||||| |||| ||||||| Sbjct: 22655 cttgttatagatttgttccaaccctcaatcctcttttcgagattcatcgatattgaatca 22596 Query: 548 attgaacgc 556 || |||||| Sbjct: 22595 atcgaacgc 22587
>emb|X03912.1|CHPSATPA Pea chloroplast DNA (4.7 kb) 5' to ATP-synthase a subunit gene Length = 4680 Score = 305 bits (154), Expect = 8e-80 Identities = 387/467 (82%) Strand = Plus / Minus Query: 89 cctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaactcgagcagtttct 148 ||||||||||||||||| ||||| || || || |||||||||||||||| |||||||||| Sbjct: 3300 cctttcaaccaatcaatacgaccccgaagagcggcttttgctaaaactctagcagtttct 3241 Query: 149 tgaaaacttgcttcagatatgaaactttgggtattcagggaagcccttgttattcccaat 208 |||||||| ||||| |||||||||||||| |||||||| || | |||||| ||||||| Sbjct: 3240 tgaaaactcgcttcggatatgaaactttgagtattcagagatgtttttgttactcccaat 3181 Query: 209 aagattgcccgataatagatcgattcatccaaagctcgccctgctcgttccgctcgcaat 268 || | || | ||| | || | ||| ||||| || ||||| | |||||| ||||||||| Sbjct: 3180 aataaagctctgtaacaaattgcttcttccaaggcacgccccgttcgttctgctcgcaat 3121 Query: 269 agtccgattaattccccaggcnnnnnnncattagacattccatcttcggaaacccgcact 328 | ||| |||| ||| ||||| |||||||||||||||||| |||||| ||| Sbjct: 3120 aatccaattagttcgccaggtaaaaatatattagacattccatcttctgaaaccaagact 3061 Query: 329 tttgatgttacttggcgtataataatctctatatgtctattatggatctgtaccccttgg 388 || ||||||| ||| || | ||||||||| ||||||||||||||||| ||||| || ||| Sbjct: 3060 ttggatgttatttgacgcacaataatctcgatatgtctattatggatgtgtactccctgg 3001 Query: 389 gatcgataaaccttttggattttattaaccaaagaaatacgactttgggctatggttagc 448 ||||||||||||||||||||||||||||||||||||||||||||||| || || |||||| Sbjct: 3000 gatcgataaaccttttggattttattaaccaaagaaatacgactttgcgcgatagttagc 2941 Query: 449 tcagctccaatcaagaatccccaagggaccccaagaattcttggtatacgctcattccaa 508 ||||| |||||||||||||||||||| | || | |||| ||| ||||| ||| |||||| Sbjct: 2940 tcagcaccaatcaagaatccccaaggaatgccgataatttttgttatacactcgttccaa 2881 Query: 509 tcctcaattctcctttcgagattgggggataatgaatcaattgaacg 555 | |||||||| |||| ||||| ||||| ||||||||| ||||| Sbjct: 2880 gcatcaattcttttttctagattcatggatattgaatcaatcgaacg 2834
>gb|DQ231548.1| Brassica rapa subsp. pekinensis chloroplast sequence Length = 153482 Score = 303 bits (153), Expect = 3e-79 Identities = 359/430 (83%) Strand = Plus / Plus Query: 68 agaactacgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagctttt 127 ||||| || |||||||||| ||||||||||||||| || ||||| || || ||||||||| Sbjct: 15765 agaacaacattttctttcaggcctttcaaccaatcgatacgaccccgaagagcagctttt 15824 Query: 128 gctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagg 187 |||||||||| |||||||||||||||||||||||| ||||| |||||||| ||||||| Sbjct: 15825 gctaaaactctagcagtttcttgaaaacttgcttcggatataaaactttgagtattcaaa 15884 Query: 188 gaagcccttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgc 247 || || | |||||||| ||||| | || |||||| |||| | ||| || ||||| ||| Sbjct: 15885 gatgctcgagttattcctaataaaacggctcgataacagattgcttcttctaaagcacgc 15944 Query: 248 cctgctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacatt 307 || | ||||| ||||| || | ||| || ||||| ||||| ||||||||||| Sbjct: 15945 cccgtgcgttctgctcgtaacaatccaatcaattctccaggtaaaaaaacattagacatt 16004 Query: 308 ccatcttcggaaacccgcacttttgatgttacttggcgtataataatctctatatgtcta 367 || ||||| |||||| ||||||||||||| ||| |||| |||||| || ||||| ||| Sbjct: 16005 ccctcttctgaaaccaaaacttttgatgttatttgacgtacaataatttcgatatgccta 16064 Query: 368 ttatggatctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaata 427 ||||| ||||| ||||| |||||||||||||||||||| || |||||||||||||||||| Sbjct: 16065 ttatgaatctgcaccccctgggatcgataaaccttttgaatcttattaaccaaagaaata 16124 Query: 428 cgactttgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaatt 487 |||||||| |||| ||||||||||| |||||||||||||||||||| | ||||||||| Sbjct: 16125 cgactttgcactatagttagctcagcaccaatcaagaatccccaaggaattccaagaatt 16184 Query: 488 cttggtatac 497 |||| ||||| Sbjct: 16185 cttgttatac 16194
>emb|AJ243754.2|SAL243754 Sinapis alba chloroplast rpoB operon (rpoB, rpoC1 and rpoC2 genes) Length = 11206 Score = 295 bits (149), Expect = 8e-77 Identities = 358/430 (83%) Strand = Plus / Minus Query: 68 agaactacgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagctttt 127 ||||| || |||||||||| ||||||||||||||| || ||||| || || ||||||||| Sbjct: 10844 agaacaacattttctttcaggcctttcaaccaatcgatacgaccccgaagagcagctttt 10785 Query: 128 gctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagg 187 ||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||| Sbjct: 10784 gctaaaactcgagcagtttcttgaaaacttgcttcggatataaaactttgagtattcaaa 10725 Query: 188 gaagcccttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgc 247 || || | |||||||| ||||| | || |||||| |||| | ||| || ||||| ||| Sbjct: 10724 gatgctcgagttattcctaataaaacggctcgataacagattgcttcttctaaagcacgc 10665 Query: 248 cctgctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacatt 307 || | ||||| ||||| || | ||| || ||||| ||||| ||||||||||| Sbjct: 10664 cccgtgcgttctgctcgtaacaatccaatcaattctccaggtaaaaaaacattagacatt 10605 Query: 308 ccatcttcggaaacccgcacttttgatgttacttggcgtataataatctctatatgtcta 367 || ||||| |||||| ||||||||||||| ||| |||| |||||| || ||||| ||| Sbjct: 10604 ccctcttctgaaaccaaaacttttgatgttatttgacgtacaataatttcgatatgccta 10545 Query: 368 ttatggatctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaata 427 ||||| ||||| ||||| ||||||| |||||||| || ||| |||||||||||||||||| Sbjct: 10544 ttatgaatctgcaccccctgggatctataaacctgtttgatcttattaaccaaagaaata 10485 Query: 428 cgactttgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaatt 487 |||||||| |||| ||||||||||| |||||||||||||||||||| | ||||||||| Sbjct: 10484 cgactttgcactatagttagctcagcaccaatcaagaatccccaaggaattccaagaatt 10425 Query: 488 cttggtatac 497 |||| ||||| Sbjct: 10424 cttgttatac 10415
>dbj|AP002983.1| Lotus japonicus chloroplast DNA, complete genome Length = 150519 Score = 280 bits (141), Expect = 5e-72 Identities = 371/450 (82%) Strand = Plus / Minus Query: 76 gttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaac 135 ||||||||| | |||||||||||||| || |||||||| || || |||||||||||||| Sbjct: 44506 gttttcttttagacctttcaaccaatcgatacgacctcggagagcggcttttgctaaaac 44447 Query: 136 tcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaagccct 195 || |||||||||||||||||||||||| |||||||||||||| |||||||| || | | Sbjct: 44446 tctagcagtttcttgaaaacttgcttcggatatgaaactttgagtattcagagatgtttt 44387 Query: 196 tgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgctcg 255 ||||||||||||||| | | || ||| | || ||||| ||||| || ||||||| ||| Sbjct: 44386 tgttattcccaataatagagttcggtaacaaatagattcttccaaggcgcgccctgttcg 44327 Query: 256 ttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatcttc 315 || ||||| || | ||| |||| |||||| || |||| |||||||||||||| Sbjct: 44326 ttgagctcgtaacaatccaattagttcccccggtgaaaatacattcgacattccatcttc 44267 Query: 316 ggaaacccgcacttttgatgttacttggcgtataataatctctatatgtctattatggat 375 || ||| ||||||||||||| ||| || | |||||| || ||||||||||||||||| Sbjct: 44266 tgacaccaagacttttgatgttatttgacgaacaataatttcgatatgtctattatggat 44207 Query: 376 ctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgactttg 435 || || || |||||||||||||| ||||||||||||| |||||||||||||||||||| Sbjct: 44206 gtgcactccctgggatcgataaactctttggattttattcaccaaagaaatacgactttg 44147 Query: 436 ggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttggtat 495 ||||| ||||||||||| ||||||||||||| |||||| | || ||||||| || ||| Sbjct: 44146 agctatagttagctcagcaccaatcaagaatctccaaggaatgcccagaattcctgttat 44087 Query: 496 acgctcattccaatcctcaattctcctttc 525 ||| || |||||| | ||||||||| |||| Sbjct: 44086 acgttcgttccaagcatcaattctcttttc 44057
>dbj|AB098212.1| Nicotiana sylvestris rpoC2 gene for RNA polymerase beta'' subunit, partial cds Length = 336 Score = 240 bits (121), Expect = 4e-60 Identities = 276/330 (83%) Strand = Plus / Minus Query: 94 caaccaatcaatgcgacctcgtagggcagcttttgctaaaactcgagcagtttcttgaaa 153 ||||||||| || ||||| || || || |||||||||||||||||||||||||||||||| Sbjct: 336 caaccaatcgatacgaccccggagagccgcttttgctaaaactcgagcagtttcttgaaa 277 Query: 154 acttgcttcagatatgaaactttgggtattcagggaagcccttgttattcccaataagat 213 ||| |||||||||||||||||||| ||||| || || || ||||||||||||||||||| Sbjct: 276 actcgcttcagatatgaaactttgagtattgagagatgctcttgttattcccaataagac 217 Query: 214 tgcccgataatagatcgattcatccaaagctcgccctgctcgttccgctcgcaatagtcc 273 | || ||| |||||| ||| |||||||| ||||| |||||| |||||||| | ||| Sbjct: 216 gactcggtaacagatcgcttcttccaaagcgcgccccattcgttctgctcgcaacaatcc 157 Query: 274 gattaattccccaggcnnnnnnncattagacattccatcttcggaaacccgcacttttga 333 || | ||| || || ||||||||||||||||||| |||||| ||||||||| Sbjct: 156 aataagttctccgggtgaaaaaacattagacattccatcttctgaaaccaacacttttga 97 Query: 334 tgttacttggcgtataataatctctatatgtctattatggatctgtaccccttgggatcg 393 ||||| ||| |||| |||||| |||| ||| |||||||| ||||| ||||| ||||| || Sbjct: 96 tgttatttgacgtacaataatttctagatgcctattatgaatctgcaccccctgggagcg 37 Query: 394 ataaaccttttggattttattaaccaaaga 423 |||||||| ||||||||||||||||||||| Sbjct: 36 ataaacctgttggattttattaaccaaaga 7
>gb|AF289093.1| Glycine max chloroplast rpoBC gene cluster, complete sequence Length = 12968 Score = 236 bits (119), Expect = 6e-59 Identities = 226/264 (85%) Strand = Plus / Minus Query: 245 cgccctgctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagac 304 |||||||||||||| |||||||| | ||| |||| ||| || ||| |||||||| Sbjct: 11558 cgccctgctcgttcggctcgcaacaatccaattagttcaccgggcaaaaaaacattagac 11499 Query: 305 attccatcttcggaaacccgcacttttgatgttacttggcgtataataatctctatatgt 364 |||||||||||||||||| ||||||||||||| ||| || | |||||| ||||||||| Sbjct: 11498 attccatcttcggaaaccaagacttttgatgttatttgacgcacaataatttctatatgt 11439 Query: 365 ctattatggatctgtaccccttgggatcgataaaccttttggattttattaaccaaagaa 424 |||||||| || || || || |||||||||||||| ||||| |||||||||||||||||| Sbjct: 11438 ctattatgaatgtgaactccctgggatcgataaactttttgaattttattaaccaaagaa 11379 Query: 425 atacgactttgggctatggttagctcagctccaatcaagaatccccaagggaccccaaga 484 ||||||||||| ||||| ||||||||||| |||||||||||||||||||| | |||||| Sbjct: 11378 atacgactttgcgctatcgttagctcagcaccaatcaagaatccccaaggaatgccaaga 11319 Query: 485 attcttggtatacgctcattccaa 508 ||| ||| ||||||| |||||||| Sbjct: 11318 atttttgttatacgcccattccaa 11295 Score = 137 bits (69), Expect = 4e-29 Identities = 128/150 (85%) Strand = Plus / Minus Query: 37 gaatccggtaccaacaggtataatnnnnnnnagaactacgttttctttcaagcctttcaa 96 ||||||||||||||||||||| || | ||| ||||| ||||||| |||||||| Sbjct: 11766 gaatccggtaccaacaggtatcattccccctaaaacaacgttctctttcagacctttcaa 11707 Query: 97 ccaatcaatgcgacctcgtagggcagcttttgctaaaactcgagcagtttcttgaaaact 156 |||||| ||||| || || || || ||||||| |||||||| |||||||||||||||||| Sbjct: 11706 ccaatctatgcgcccccggagagcggcttttgataaaactctagcagtttcttgaaaact 11647 Query: 157 tgcttcagatatgaaactttgggtattcag 186 ||||||||||||||||||||| |||||||| Sbjct: 11646 tgcttcagatatgaaactttgagtattcag 11617
>gb|DQ317523.1| Glycine max cultivar PI 437654 chloroplast, complete genome Length = 152218 Score = 236 bits (119), Expect = 6e-59 Identities = 226/264 (85%) Strand = Plus / Minus Query: 245 cgccctgctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagac 304 |||||||||||||| |||||||| | ||| |||| ||| || ||| |||||||| Sbjct: 44350 cgccctgctcgttcggctcgcaacaatccaattagttcaccgggcaaaaaaacattagac 44291 Query: 305 attccatcttcggaaacccgcacttttgatgttacttggcgtataataatctctatatgt 364 |||||||||||||||||| ||||||||||||| ||| || | |||||| ||||||||| Sbjct: 44290 attccatcttcggaaaccaagacttttgatgttatttgacgcacaataatttctatatgt 44231 Query: 365 ctattatggatctgtaccccttgggatcgataaaccttttggattttattaaccaaagaa 424 |||||||| || || || || |||||||||||||| ||||| |||||||||||||||||| Sbjct: 44230 ctattatgaatgtgaactccctgggatcgataaactttttgaattttattaaccaaagaa 44171 Query: 425 atacgactttgggctatggttagctcagctccaatcaagaatccccaagggaccccaaga 484 ||||||||||| ||||| ||||||||||| |||||||||||||||||||| | |||||| Sbjct: 44170 atacgactttgcgctatcgttagctcagcaccaatcaagaatccccaaggaatgccaaga 44111 Query: 485 attcttggtatacgctcattccaa 508 ||| ||| ||||||| |||||||| Sbjct: 44110 atttttgttatacgcccattccaa 44087 Score = 137 bits (69), Expect = 4e-29 Identities = 128/150 (85%) Strand = Plus / Minus Query: 37 gaatccggtaccaacaggtataatnnnnnnnagaactacgttttctttcaagcctttcaa 96 ||||||||||||||||||||| || | ||| ||||| ||||||| |||||||| Sbjct: 44558 gaatccggtaccaacaggtatcattccccctaaaacaacgttctctttcagacctttcaa 44499 Query: 97 ccaatcaatgcgacctcgtagggcagcttttgctaaaactcgagcagtttcttgaaaact 156 |||||| ||||| || || || || ||||||| |||||||| |||||||||||||||||| Sbjct: 44498 ccaatctatgcgcccccggagagcggcttttgataaaactctagcagtttcttgaaaact 44439 Query: 157 tgcttcagatatgaaactttgggtattcag 186 ||||||||||||||||||||| |||||||| Sbjct: 44438 tgcttcagatatgaaactttgagtattcag 44409
>dbj|AB098233.1| Nicotiana tomentosiformis rpoC2 gene for RNA polymerase beta'' subunit, partial cds Length = 329 Score = 232 bits (117), Expect = 1e-57 Identities = 254/302 (84%) Strand = Plus / Minus Query: 122 gcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggta 181 ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||| Sbjct: 305 gcttttgctaaaactcgagcagtctcttgaaaactcgcttcagatatgaaactttgagta 246 Query: 182 ttcagggaagcccttgttattcccaataagattgcccgataatagatcgattcatccaaa 241 || || || || ||||||||||||||||||| | || ||| |||||| ||| |||||| Sbjct: 245 ttgagagatgctcttgttattcccaataagacgactcggtaacagatcgcttcttccaaa 186 Query: 242 gctcgccctgctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncatta 301 || ||||| |||||| |||||||| | ||| || | ||| || || ||||| Sbjct: 185 gcgcgccccattcgttctgctcgcaacaatccaataagttctccgggtgaaaaaacatta 126 Query: 302 gacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctctata 361 |||||||||||||| |||||| |||||||||||||| ||| |||| |||||| |||||| Sbjct: 125 gacattccatcttctgaaaccaacacttttgatgttatttgacgtacaataatttctata 66 Query: 362 tgtctattatggatctgtaccccttgggatcgataaaccttttggattttattaaccaaa 421 || |||||||| ||||| ||||| ||||| |||||||||| ||||||||||||||||||| Sbjct: 65 tgcctattatgaatctgcaccccctgggagcgataaacctgttggattttattaaccaaa 6 Query: 422 ga 423 || Sbjct: 5 ga 4
>dbj|AP004576.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT01N11, TM0177, complete sequence Length = 133589 Score = 190 bits (96), Expect = 3e-45 Identities = 269/329 (81%) Strand = Plus / Minus Query: 107 cgacctcgtagggcagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagat 166 |||||||| || || |||||||||||||||| |||||||||||||||||||||||| ||| Sbjct: 85562 cgacctcggagagcggcttttgctaaaactctagcagtttcttgaaaacttgcttcggat 85503 Query: 167 atgaaactttgggtattcagggaagcccttgttattcccaataagattgcccgataatag 226 ||||||||||| ||||||| || | |||||||||||||||| || | || ||| | Sbjct: 85502 atgaaactttgagtattcatagatgtttttgttattcccaataatatagttcggtaacaa 85443 Query: 227 atcgattcatccaaagctcgccctgctcgttccgctcgcaatagtccgattaattcccca 286 || ||||| ||||| || ||||||| ||||| ||||| || | ||| |||| |||||| Sbjct: 85442 atagattcttccaaggcacgccctgttcgttgagctcgtaacaatccaattagttccccc 85383 Query: 287 ggcnnnnnnncattagacattccatcttcggaaacccgcacttttgatgttacttggcgt 346 | |||| |||||||||||||| || ||| ||||||||||||| ||| || Sbjct: 85382 agtgaaaatacattcgacattccatcttctgacaccaagacttttgatgttatttgacga 85323 Query: 347 ataataatctctatatgtctattatggatctgtaccccttgggatcgataaaccttttgg 406 | |||||| || ||||||||||||||||| || || || |||||||||||||| ||||| Sbjct: 85322 acaataatttcgatatgtctattatggatgtgcactccctgggatcgataaactctttgg 85263 Query: 407 attttattaaccaaagaaatacgactttg 435 |||||||| |||||||||||||||||||| Sbjct: 85262 attttattcaccaaagaaatacgactttg 85234
>gb|DQ167399.1| Oryza sativa (indica cultivar-group) isolate 93-11 mitochondrion, complete genome Length = 491515 Score = 182 bits (92), Expect = 8e-43 Identities = 148/166 (89%), Gaps = 3/166 (1%) Strand = Plus / Minus Query: 303 acattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctctatat 362 ||||||||||||| |||||| |||||||||||||||||| || | ||||||||| |||| Sbjct: 247184 acattccatcttctgaaaccaacacttttgatgttacttgacgcacaataatctcgatat 247125 Query: 363 gtctattatggatctgtaccccttgggatcgataaaccttttgga---ttttattaacca 419 ||||||||||||||||||| || ||| ||||| |||||||| ||| | || ||||||| Sbjct: 247124 gtctattatggatctgtactccctggtatcgagaaacctttaggatcttcttcttaacca 247065 Query: 420 aagaaatacgactttgggctatggttagctcagctccaatcaagaa 465 |||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 247064 aagaaatacgactttgggctatggttagctcagctccaataaagaa 247019
>gb|DQ167807.1| Oryza sativa (japonica cultivar-group) isolate PA64S mitochondrion, complete genome Length = 490673 Score = 182 bits (92), Expect = 8e-43 Identities = 148/166 (89%), Gaps = 3/166 (1%) Strand = Plus / Minus Query: 303 acattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctctatat 362 ||||||||||||| |||||| |||||||||||||||||| || | ||||||||| |||| Sbjct: 246366 acattccatcttctgaaaccaacacttttgatgttacttgacgcacaataatctcgatat 246307 Query: 363 gtctattatggatctgtaccccttgggatcgataaaccttttgga---ttttattaacca 419 ||||||||||||||||||| || ||| ||||| |||||||| ||| | || ||||||| Sbjct: 246306 gtctattatggatctgtactccctggtatcgagaaacctttaggatcttcttcttaacca 246247 Query: 420 aagaaatacgactttgggctatggttagctcagctccaatcaagaa 465 |||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 246246 aagaaatacgactttgggctatggttagctcagctccaataaagaa 246201
>gb|DQ167400.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare mitochondrion, complete genome Length = 490669 Score = 182 bits (92), Expect = 8e-43 Identities = 148/166 (89%), Gaps = 3/166 (1%) Strand = Plus / Minus Query: 303 acattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctctatat 362 ||||||||||||| |||||| |||||||||||||||||| || | ||||||||| |||| Sbjct: 246363 acattccatcttctgaaaccaacacttttgatgttacttgacgcacaataatctcgatat 246304 Query: 363 gtctattatggatctgtaccccttgggatcgataaaccttttgga---ttttattaacca 419 ||||||||||||||||||| || ||| ||||| |||||||| ||| | || ||||||| Sbjct: 246303 gtctattatggatctgtactccctggtatcgagaaacctttaggatcttcttcttaacca 246244 Query: 420 aagaaatacgactttgggctatggttagctcagctccaatcaagaa 465 |||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 246243 aagaaatacgactttgggctatggttagctcagctccaataaagaa 246198
>dbj|BA000029.3| Oryza sativa (japonica cultivar-group) mitochondrial DNA, complete genome Length = 490520 Score = 182 bits (92), Expect = 8e-43 Identities = 148/166 (89%), Gaps = 3/166 (1%) Strand = Plus / Minus Query: 303 acattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctctatat 362 ||||||||||||| |||||| |||||||||||||||||| || | ||||||||| |||| Sbjct: 246242 acattccatcttctgaaaccaacacttttgatgttacttgacgcacaataatctcgatat 246183 Query: 363 gtctattatggatctgtaccccttgggatcgataaaccttttgga---ttttattaacca 419 ||||||||||||||||||| || ||| ||||| |||||||| ||| | || ||||||| Sbjct: 246182 gtctattatggatctgtactccctggtatcgagaaacctttaggatcttcttcttaacca 246123 Query: 420 aagaaatacgactttgggctatggttagctcagctccaatcaagaa 465 |||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 246122 aagaaatacgactttgggctatggttagctcagctccaataaagaa 246077
>emb|AJ506156.2|ATR506156 Amborella trichopoda chloroplast genomic DNA, complete sequence Length = 162686 Score = 180 bits (91), Expect = 3e-42 Identities = 154/175 (88%) Strand = Plus / Plus Query: 297 cattagacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatct 356 ||||||||||||||||||| |||||| ||||||||||||| ||| |||| |||| | | Sbjct: 20407 cattagacattccatcttctgaaaccaagacttttgatgttatttgtcgtacaatagttt 20466 Query: 357 ctatatgtctattatggatctgtaccccttgggatcgataaaccttttggattttattaa 416 ||||||| |||||||||||||| ||||| ||||||||||||||||||||||| ||||||| Sbjct: 20467 ctatatgcctattatggatctgcaccccctgggatcgataaaccttttggatcttattaa 20526 Query: 417 ccaaagaaatacgactttgggctatggttagctcagctccaatcaagaatcccca 471 ||||||| ||||||||||| |||||||||||| ||| | ||| |||||| |||| Sbjct: 20527 ccaaagagatacgactttgcactatggttagctgagcactaataaagaattccca 20581 Score = 143 bits (72), Expect = 7e-31 Identities = 146/173 (84%) Strand = Plus / Plus Query: 37 gaatccggtaccaacaggtataatnnnnnnnagaactacgttttctttcaagcctttcaa 96 ||||||||||||||||||||| || ||||| || || ||||||| ||||||||| Sbjct: 20147 gaatccggtaccaacaggtatcatcccccccagaacaacattctctttcaggcctttcaa 20206 Query: 97 ccaatcaatgcgacctcgtagggcagcttttgctaaaactcgagcagtttcttgaaaact 156 ||||||||| |||| ||| || || ||||| |||||||| |||| |||||||||||||| Sbjct: 20207 ccaatcaatacgacttcggagagcggctttcgctaaaacccgagtggtttcttgaaaact 20266 Query: 157 tgcttcagatatgaaactttgggtattcagggaagcccttgttattcccaata 209 ||||| |||||||||||||| |||||||| || ||||| ||||||||||||| Sbjct: 20267 cgcttctgatatgaaactttgagtattcagagatgccctcgttattcccaata 20319
>emb|AJ391748.1|VME391748 Vicia melanops genomic repetitive element, clone M27 Length = 509 Score = 151 bits (76), Expect = 3e-33 Identities = 219/269 (81%) Strand = Plus / Minus Query: 89 cctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaactcgagcagtttct 148 ||||||||||||||||| ||||| || || || |||||||||||||||| |||||||||| Sbjct: 271 cctttcaaccaatcaatacgaccccgaagagcggcttttgctaaaactctagcagtttct 212 Query: 149 tgaaaacttgcttcagatatgaaactttgggtattcagggaagcccttgttattcccaat 208 |||||||| ||||| |||||||||||||| |||||||| || | |||||||||||||| Sbjct: 211 tgaaaactcgcttcggatatgaaactttgagtattcagagatgtttttgttattcccaat 152 Query: 209 aagattgcccgataatagatcgattcatccaaagctcgccctgctcgttccgctcgcaat 268 || | || || ||| | || | ||| ||||| || ||||| | |||||| ||||||||| Sbjct: 151 aaaaaagctcggtaacaaattggttcttccaaggcacgccccgttcgttctgctcgcaat 92 Query: 269 agtccgattaattccccaggcnnnnnnncattagacattccatcttcggaaacccgcact 328 | ||| |||| ||| ||||| ||||||||||||||||||| |||||| ||| Sbjct: 91 aatccaattagttcgccaggtaaaaatacattagacattccatcttctgaaaccaagact 32 Query: 329 tttgatgttacttggcgtataataatctc 357 || ||||||| ||| || | ||||||||| Sbjct: 31 ttggatgttatttgacgcacaataatctc 3
>dbj|D17510.1|PINCPTRPG Pinus thunbergii chloroplast DNA, complete sequence Length = 119707 Score = 147 bits (74), Expect = 5e-32 Identities = 119/134 (88%) Strand = Plus / Plus Query: 77 ttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaact 136 ||||| |||||||||||||||||||| ||||||||| |||| |||||||| ||||| || Sbjct: 16390 ttttccttcaagcctttcaaccaatcgatgcgaccttgtagagcagctttagctaagacc 16449 Query: 137 cgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaagccctt 196 |||||||||||||| ||||| ||||| ||||| |||||||| |||||||| || |||||| Sbjct: 16450 cgagcagtttcttggaaactcgcttcggatataaaactttgagtattcagagatgccctt 16509 Query: 197 gttattcccaataa 210 |||||||| ||||| Sbjct: 16510 gttattcctaataa 16523 Score = 40.1 bits (20), Expect = 7.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 378 gtaccccttgggatcgataaaccttttg 405 |||||||||||||||| ||||| ||||| Sbjct: 16691 gtaccccttgggatcggtaaactttttg 16718
>gb|AY228468.1| Pinus Koraiensis chloroplast, complete genome Length = 116866 Score = 139 bits (70), Expect = 1e-29 Identities = 118/134 (88%) Strand = Plus / Plus Query: 77 ttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaact 136 ||||| |||||||||||||||||||| || |||||| |||| |||||||| ||||| || Sbjct: 16066 ttttccttcaagcctttcaaccaatcgatacgaccttgtagagcagctttagctaagacc 16125 Query: 137 cgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaagccctt 196 |||||||||||||| ||||| ||||| ||||| |||||||| |||||||| || |||||| Sbjct: 16126 cgagcagtttcttggaaactcgcttcggatataaaactttgagtattcagagatgccctt 16185 Query: 197 gttattcccaataa 210 |||||||| ||||| Sbjct: 16186 gttattcctaataa 16199 Score = 48.1 bits (24), Expect = 0.031 Identities = 66/80 (82%) Strand = Plus / Plus Query: 326 acttttgatgttacttggcgtataataatctctatatgtctattatggatctgtacccct 385 ||||| ||||| | |||||||| ||||||||||||||| ||| | || |||||||| Sbjct: 16315 actttcgatgtcatttggcgtacaataatctctatatgcttatcaccaattcgtacccct 16374 Query: 386 tgggatcgataaaccttttg 405 |||||||| ||||| ||||| Sbjct: 16375 tgggatcggtaaactttttg 16394
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 135 bits (68), Expect = 2e-28 Identities = 149/174 (85%), Gaps = 3/174 (1%) Strand = Plus / Minus Query: 2 ttcttgtcttgtggggaacgatgcacaaatttttggaatccggtaccaacaggtataatn 61 ||||||||||||| | ||| |||||| | |||| |||||||||||||||||||||||| Sbjct: 2909709 ttcttgtcttgtgagtaacagtgcacagaattttagaatccggtaccaacaggtataatc 2909650 Query: 62 nnnnnnagaactacgttttctttcaagcctttcaaccaatcaatgcgacctcgt-agggc 120 ||||||||||||||||||| ||||||||| |||||||| ||||||||| | || Sbjct: 2909649 ccctc-agaactacgttttctttcaggcctttcaatcaatcaatacgacctcgtaaaggt 2909591 Query: 121 agcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaact 174 || ||||||| |||| ||||||||||||| |||||||||| ||||||||||||| Sbjct: 2909590 agattttgct-aaacccgagcagtttcttaaaaacttgctccagatatgaaact 2909538 Score = 125 bits (63), Expect = 2e-25 Identities = 109/124 (87%), Gaps = 4/124 (3%) Strand = Plus / Plus Query: 332 gatgttacttggcgtataataatctctatatgtctattatggatctgtaccccttgggat 391 ||||||||||||||||||||||||||||||||| |||||| ||| |||| ||||| Sbjct: 21024855 gatgttacttggcgtataataatctctatatgtttattatagattcgtacttcttgg--- 21024911 Query: 392 cgataaaccttttggattttattaaccaaagaaatacgactttgggctatggttagctca 451 ||||||||||||| || |||||||||||||| |||||||||||||||| ||||| |||| Sbjct: 21024912 -gataaaccttttgaatcttattaaccaaagatatacgactttgggctacggttaactca 21024970 Query: 452 gctc 455 |||| Sbjct: 21024971 gctc 21024974 Score = 81.8 bits (41), Expect = 2e-12 Identities = 53/57 (92%) Strand = Plus / Minus Query: 201 ttcccaataagattgcccgataatagatcgattcatccaaagctcgccctgctcgtt 257 |||||||||||||||| ||||||||||| |||||||||||||| |||||||||||| Sbjct: 2909526 ttcccaataagattgctcgataatagattgattcatccaaagcctgccctgctcgtt 2909470
>dbj|AP004461.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0443G08 Length = 162139 Score = 135 bits (68), Expect = 2e-28 Identities = 149/174 (85%), Gaps = 3/174 (1%) Strand = Plus / Minus Query: 2 ttcttgtcttgtggggaacgatgcacaaatttttggaatccggtaccaacaggtataatn 61 ||||||||||||| | ||| |||||| | |||| |||||||||||||||||||||||| Sbjct: 82771 ttcttgtcttgtgagtaacagtgcacagaattttagaatccggtaccaacaggtataatc 82712 Query: 62 nnnnnnagaactacgttttctttcaagcctttcaaccaatcaatgcgacctcgt-agggc 120 ||||||||||||||||||| ||||||||| |||||||| ||||||||| | || Sbjct: 82711 ccctc-agaactacgttttctttcaggcctttcaatcaatcaatacgacctcgtaaaggt 82653 Query: 121 agcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaact 174 || ||||||| |||| ||||||||||||| |||||||||| ||||||||||||| Sbjct: 82652 agattttgct-aaacccgagcagtttcttaaaaacttgctccagatatgaaact 82600 Score = 81.8 bits (41), Expect = 2e-12 Identities = 53/57 (92%) Strand = Plus / Minus Query: 201 ttcccaataagattgcccgataatagatcgattcatccaaagctcgccctgctcgtt 257 |||||||||||||||| ||||||||||| |||||||||||||| |||||||||||| Sbjct: 82588 ttcccaataagattgctcgataatagattgattcatccaaagcctgccctgctcgtt 82532
>dbj|AP002054.1| Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone: T15D2 Length = 87219 Score = 129 bits (65), Expect = 1e-26 Identities = 117/133 (87%), Gaps = 1/133 (0%) Strand = Plus / Plus Query: 365 ctattatggatctgtaccccttgggatcgataaaccttttggattttattaaccaaagaa 424 |||||||| |||| |||||||||||||||||||||||||| || |||| |||||||||| Sbjct: 38904 ctattatgaatctacaccccttgggatcgataaaccttttgaatcttat-aaccaaagaa 38962 Query: 425 atacgactttgggctatggttagctcagctccaatcaagaatccccaagggaccccaaga 484 ||||||||||| |||| |||| |||||| ||| |||||||||||||||| | |||||| Sbjct: 38963 atacgactttgcactatagttaactcagcaccactcaagaatccccaaggaattccaaga 39022 Query: 485 attcttggtatac 497 ||||||| ||||| Sbjct: 39023 attcttgttatac 39035 Score = 77.8 bits (39), Expect = 3e-11 Identities = 58/63 (92%), Gaps = 1/63 (1%) Strand = Plus / Plus Query: 123 cttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtat 182 ||||| |||||||||||||||||| ||||||||||||||| ||||| |||||||| |||| Sbjct: 38673 ctttttctaaaactcgagcagtttattgaaaacttgcttcggatat-aaactttgagtat 38731 Query: 183 tca 185 ||| Sbjct: 38732 tca 38734
>dbj|AP004666.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0431A03 Length = 149500 Score = 125 bits (63), Expect = 2e-25 Identities = 109/124 (87%), Gaps = 4/124 (3%) Strand = Plus / Plus Query: 332 gatgttacttggcgtataataatctctatatgtctattatggatctgtaccccttgggat 391 ||||||||||||||||||||||||||||||||| |||||| ||| |||| ||||| Sbjct: 91030 gatgttacttggcgtataataatctctatatgtttattatagattcgtacttcttgg--- 91086 Query: 392 cgataaaccttttggattttattaaccaaagaaatacgactttgggctatggttagctca 451 ||||||||||||| || |||||||||||||| |||||||||||||||| ||||| |||| Sbjct: 91087 -gataaaccttttgaatcttattaaccaaagatatacgactttgggctacggttaactca 91145 Query: 452 gctc 455 |||| Sbjct: 91146 gctc 91149
>gb|DQ069542.1| Ginkgo biloba RNA polymerase beta'' chain (rpoC2) gene, partial cds; chloroplast Length = 4125 Score = 123 bits (62), Expect = 7e-25 Identities = 116/134 (86%) Strand = Plus / Minus Query: 77 ttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaact 136 ||||| ||||||||||||||||||||||| |||||||| || |||||||| || || || Sbjct: 3902 ttttccttcaagcctttcaaccaatcaatacgacctcggagagcagctttagccaagacc 3843 Query: 137 cgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaagccctt 196 ||||||||||| |||||||| ||| | ||||| |||||||| |||| ||| || ||||| Sbjct: 3842 cgagcagtttcctgaaaactcgctcctgatataaaactttgagtatccagagatgccctc 3783 Query: 197 gttattcccaataa 210 |||||||||||||| Sbjct: 3782 gttattcccaataa 3769 Score = 48.1 bits (24), Expect = 0.031 Identities = 66/80 (82%) Strand = Plus / Minus Query: 340 ttggcgtataataatctctatatgtctattatggatctgtaccccttgggatcgataaac 399 |||||||| ||||||||||||||| ||| || || | || ||||||||||| ||||| Sbjct: 3639 ttggcgtacaataatctctatatgcttatcataaattcgcactccttgggatcggtaaac 3580 Query: 400 cttttggattttattaacca 419 |||||| |||| ||| |||| Sbjct: 3579 cttttgaatttgattgacca 3560
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 119 bits (60), Expect = 1e-23 Identities = 63/64 (98%) Strand = Plus / Plus Query: 118 ggcagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttg 177 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 5782214 ggcagcttttgctaaaactcgagcagtttcttgaaaacttgcttcatatatgaaactttg 5782273 Query: 178 ggta 181 |||| Sbjct: 5782274 ggta 5782277
>gb|AC146619.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNAa0021B21, from chromosome 3, complete sequence Length = 139208 Score = 119 bits (60), Expect = 1e-23 Identities = 63/64 (98%) Strand = Plus / Plus Query: 118 ggcagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttg 177 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 11044 ggcagcttttgctaaaactcgagcagtttcttgaaaacttgcttcatatatgaaactttg 11103 Query: 178 ggta 181 |||| Sbjct: 11104 ggta 11107
>gb|AC104179.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0021B21, from chromosome 3, complete sequence Length = 166777 Score = 119 bits (60), Expect = 1e-23 Identities = 63/64 (98%) Strand = Plus / Minus Query: 118 ggcagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttg 177 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 48957 ggcagcttttgctaaaactcgagcagtttcttgaaaacttgcttcatatatgaaactttg 48898 Query: 178 ggta 181 |||| Sbjct: 48897 ggta 48894
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 119 bits (60), Expect = 1e-23 Identities = 63/64 (98%) Strand = Plus / Plus Query: 118 ggcagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttg 177 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 5781427 ggcagcttttgctaaaactcgagcagtttcttgaaaacttgcttcatatatgaaactttg 5781486 Query: 178 ggta 181 |||| Sbjct: 5781487 ggta 5781490
>dbj|AP005672.1| Physcomitrella patens subsp. patens chloroplast DNA, complete genome Length = 122890 Score = 117 bits (59), Expect = 4e-23 Identities = 95/107 (88%) Strand = Plus / Plus Query: 77 ttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaact 136 |||||||| || ||||||| ||||||||| |||||||||| || ||||||||||||||| Sbjct: 67817 ttttcttttaaacctttcagccaatcaattcgacctcgtaatgctgcttttgctaaaact 67876 Query: 137 cgagcagtttcttgaaaacttgcttcagatatgaaactttgggtatt 183 |||| ||||||||||||||| ||||| ||||| |||||||| ||||| Sbjct: 67877 cgagtagtttcttgaaaactagcttcggatataaaactttgagtatt 67923
>dbj|AP004638.1| Psilotum nudum chloroplast DNA, complete genome Length = 138829 Score = 101 bits (51), Expect = 2e-18 Identities = 81/91 (89%) Strand = Plus / Plus Query: 77 ttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaact 136 |||||||||| |||||||||||||||||| |||||||||| |||||| ||||| ||| Sbjct: 21611 ttttctttcaggcctttcaaccaatcaattcgacctcgtattgcagctcgagctaatact 21670 Query: 137 cgagcagtttcttgaaaacttgcttcagata 167 |||| ||||||||||||||||||||| |||| Sbjct: 21671 cgagtagtttcttgaaaacttgcttccgata 21701
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 93.7 bits (47), Expect = 6e-16 Identities = 53/55 (96%) Strand = Plus / Minus Query: 3 tcttgtcttgtggggaacgatgcacaaatttttggaatccggtaccaacaggtat 57 |||||||||||||| |||| ||||||||||||||||||||||||||||||||||| Sbjct: 10259823 tcttgtcttgtgggtaacggtgcacaaatttttggaatccggtaccaacaggtat 10259769
>dbj|AP005659.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0649C11 Length = 138870 Score = 93.7 bits (47), Expect = 6e-16 Identities = 53/55 (96%) Strand = Plus / Minus Query: 3 tcttgtcttgtggggaacgatgcacaaatttttggaatccggtaccaacaggtat 57 |||||||||||||| |||| ||||||||||||||||||||||||||||||||||| Sbjct: 64050 tcttgtcttgtgggtaacggtgcacaaatttttggaatccggtaccaacaggtat 63996
>dbj|AB087420.1| Anthoceros formosae chloroplast rpoC2 mRNA for RNA polymerase beta'' subunit, complete cds Length = 4494 Score = 91.7 bits (46), Expect = 2e-15 Identities = 112/134 (83%) Strand = Plus / Minus Query: 77 ttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaact 136 |||||||| || ||||| ||||| ||||| |||||||| || || ||||| ||||| ||| Sbjct: 4138 ttttcttttaacccttttaaccagtcaattcgacctcgaagagcggctttggctaatact 4079 Query: 137 cgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaagccctt 196 || | ||||||||||||||| ||||| ||||| ||||| || ||||| || || ||| || Sbjct: 4078 cgggtagtttcttgaaaactggcttccgatataaaactctgagtattgagagacgccttt 4019 Query: 197 gttattcccaataa 210 |||||||| ||||| Sbjct: 4018 gttattcctaataa 4005
>dbj|AB206662.1| Symplocarpus nabekuraensis chloroplast rps2, rpoC2 genes for ribosomal protein S2, RNA polymerase beta'' subunit, partial cds Length = 932 Score = 87.7 bits (44), Expect = 4e-14 Identities = 76/89 (85%) Strand = Plus / Plus Query: 29 aatttttggaatccggtaccaacaggtataatnnnnnnnagaactacgttttctttcaag 88 |||||||||||||||||||||||||||||||| ||||| || || ||||||| Sbjct: 843 aatttttggaatccggtaccaacaggtataatcccccccagaacaacattctctttcagt 902 Query: 89 cctttcaaccaatcaatgcgacctcgtag 117 ||||||||||||||||| ||||||||||| Sbjct: 903 cctttcaaccaatcaatacgacctcgtag 931
>dbj|AB206660.1| Symplocarpus foetidus chloroplast rps2, rpoC2 genes for ribosomal protein S2, RNA polymerase beta'' subunit, partial cds Length = 930 Score = 87.7 bits (44), Expect = 4e-14 Identities = 76/89 (85%) Strand = Plus / Plus Query: 29 aatttttggaatccggtaccaacaggtataatnnnnnnnagaactacgttttctttcaag 88 |||||||||||||||||||||||||||||||| ||||| || || ||||||| Sbjct: 841 aatttttggaatccggtaccaacaggtataatcccccccagaacaacattctctttcagt 900 Query: 89 cctttcaaccaatcaatgcgacctcgtag 117 ||||||||||||||||| ||||||||||| Sbjct: 901 cctttcaaccaatcaatacgacctcgtag 929
>dbj|AB206659.1| Lysichiton camtschatcensis chloroplast rps2, rpoC2 genes for ribosomal protein S2, RNA polymerase beta'' subunit, partial cds Length = 934 Score = 87.7 bits (44), Expect = 4e-14 Identities = 76/89 (85%) Strand = Plus / Plus Query: 29 aatttttggaatccggtaccaacaggtataatnnnnnnnagaactacgttttctttcaag 88 ||||||| |||||||||||||||||||||||| ||||| || || ||||||| | Sbjct: 845 aattttttgaatccggtaccaacaggtataatcccccccagaacaacattctctttcagg 904 Query: 89 cctttcaaccaatcaatgcgacctcgtag 117 ||||||||||||||||| ||||||||||| Sbjct: 905 cctttcaaccaatcaatacgacctcgtag 933
>dbj|AB029695.1| Abies veitchii DNA, rpoC2 gene for RNA polymerase bata-subunit, partial cds, and rpoC2-rps2 intergenic spacer Length = 522 Score = 87.7 bits (44), Expect = 4e-14 Identities = 86/100 (86%) Strand = Plus / Minus Query: 77 ttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaact 136 ||||| |||||||||||||||| ||| || |||||| |||| |||||||| ||||| || Sbjct: 100 ttttccttcaagcctttcaaccgatcgatacgaccttgtagagcagctttagctaagacc 41 Query: 137 cgagcagtttcttgaaaacttgcttcagatatgaaacttt 176 ||||||||||| || ||||| ||||| ||||| ||||||| Sbjct: 40 cgagcagtttcctggaaactcgcttcggatataaaacttt 1
>dbj|AB029694.1| Abies sibirica DNA, rpoC2 gene for RNA polymerase bata-subunit, partial cds, and rpoC2-rps2 intergenic spacer Length = 548 Score = 87.7 bits (44), Expect = 4e-14 Identities = 86/100 (86%) Strand = Plus / Minus Query: 77 ttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaact 136 ||||| |||||||||||||||| ||| || |||||| |||| |||||||| ||||| || Sbjct: 100 ttttccttcaagcctttcaaccgatcgatacgaccttgtagagcagctttagctaagacc 41 Query: 137 cgagcagtttcttgaaaacttgcttcagatatgaaacttt 176 ||||||||||| || ||||| ||||| ||||| ||||||| Sbjct: 40 cgagcagtttcctggaaactcgcttcggatataaaacttt 1
>dbj|AB029693.1| Abies sachalinensis DNA, rpoC2 gene for RNA polymerase bata-subunit, partial cds, and rpoC2-rps2 intergenic spacer Length = 522 Score = 87.7 bits (44), Expect = 4e-14 Identities = 86/100 (86%) Strand = Plus / Minus Query: 77 ttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaact 136 ||||| |||||||||||||||| ||| || |||||| |||| |||||||| ||||| || Sbjct: 100 ttttccttcaagcctttcaaccgatcgatacgaccttgtagagcagctttagctaagacc 41 Query: 137 cgagcagtttcttgaaaacttgcttcagatatgaaacttt 176 ||||||||||| || ||||| ||||| ||||| ||||||| Sbjct: 40 cgagcagtttcctggaaactcgcttcggatataaaacttt 1
>dbj|AB029692.1| Abies nephrolepis DNA, rpoC2 gene for RNA polymerase bata-subunit, partial cds, and rpoC2-rps2 intergenic spacer Length = 522 Score = 87.7 bits (44), Expect = 4e-14 Identities = 86/100 (86%) Strand = Plus / Minus Query: 77 ttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaact 136 ||||| |||||||||||||||| ||| || |||||| |||| |||||||| ||||| || Sbjct: 100 ttttccttcaagcctttcaaccgatcgatacgaccttgtagagcagctttagctaagacc 41 Query: 137 cgagcagtttcttgaaaacttgcttcagatatgaaacttt 176 ||||||||||| || ||||| ||||| ||||| ||||||| Sbjct: 40 cgagcagtttcctggaaactcgcttcggatataaaacttt 1
>dbj|AB029691.1| Abies mariesii DNA, rpoC2 gene for RNA polymerase bata-subunit, partial cds, and rpoC2-rps2 intergenic spacer Length = 518 Score = 87.7 bits (44), Expect = 4e-14 Identities = 86/100 (86%) Strand = Plus / Minus Query: 77 ttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaact 136 ||||| |||||||||||||||| ||| || |||||| |||| |||||||| ||||| || Sbjct: 100 ttttccttcaagcctttcaaccgatcgatacgaccttgtagagcagctttagctaagacc 41 Query: 137 cgagcagtttcttgaaaacttgcttcagatatgaaacttt 176 ||||||||||| || ||||| ||||| ||||| ||||||| Sbjct: 40 cgagcagtttcctggaaactcgcttcggatataaaacttt 1
>dbj|AB029690.1| Abies lasiocarpa DNA, rpoC2 gene for RNA polymerase bata-subunit, partial cds, and rpoC2-rps2 intergenic spacer Length = 518 Score = 87.7 bits (44), Expect = 4e-14 Identities = 86/100 (86%) Strand = Plus / Minus Query: 77 ttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaact 136 ||||| |||||||||||||||| ||| || |||||| |||| |||||||| ||||| || Sbjct: 100 ttttccttcaagcctttcaaccgatcgatacgaccttgtagagcagctttagctaagacc 41 Query: 137 cgagcagtttcttgaaaacttgcttcagatatgaaacttt 176 ||||||||||| || ||||| ||||| ||||| ||||||| Sbjct: 40 cgagcagtttcctggaaactcgcttcggatataaaacttt 1
>dbj|AB029689.1| Abies koreana DNA, rpoC2 gene for RNA polymerase bata-subunit, partial cds, and rpoC2-rps2 intergenic spacer Length = 522 Score = 87.7 bits (44), Expect = 4e-14 Identities = 86/100 (86%) Strand = Plus / Minus Query: 77 ttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaact 136 ||||| |||||||||||||||| ||| || |||||| |||| |||||||| ||||| || Sbjct: 100 ttttccttcaagcctttcaaccgatcgatacgaccttgtagagcagctttagctaagacc 41 Query: 137 cgagcagtttcttgaaaacttgcttcagatatgaaacttt 176 ||||||||||| || ||||| ||||| ||||| ||||||| Sbjct: 40 cgagcagtttcctggaaactcgcttcggatataaaacttt 1
>dbj|AB029688.1| Abies homolepis DNA, rpoC2 gene for RNA polymerase bata-subunit, partial cds, and rpoC2-rps2 intergenic spacer Length = 522 Score = 87.7 bits (44), Expect = 4e-14 Identities = 86/100 (86%) Strand = Plus / Minus Query: 77 ttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaact 136 ||||| |||||||||||||||| ||| || |||||| |||| |||||||| ||||| || Sbjct: 100 ttttccttcaagcctttcaaccgatcgatacgaccttgtagagcagctttagctaagacc 41 Query: 137 cgagcagtttcttgaaaacttgcttcagatatgaaacttt 176 ||||||||||| || ||||| ||||| ||||| ||||||| Sbjct: 40 cgagcagtttcctggaaactcgcttcggatataaaacttt 1
>dbj|AB029687.1| Abies holophylla DNA, rpoC2 gene for RNA polymerase bata-subunit, partial cds, and rpoC2-rps2 intergenic spacer Length = 522 Score = 87.7 bits (44), Expect = 4e-14 Identities = 86/100 (86%) Strand = Plus / Minus Query: 77 ttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaact 136 ||||| |||||||||||||||| ||| || |||||| |||| |||||||| ||||| || Sbjct: 100 ttttccttcaagcctttcaaccgatcgatacgaccttgtagagcagctttagctaagacc 41 Query: 137 cgagcagtttcttgaaaacttgcttcagatatgaaacttt 176 ||||||||||| || ||||| ||||| ||||| ||||||| Sbjct: 40 cgagcagtttcctggaaactcgcttcggatataaaacttt 1
>dbj|AB029686.1| Abies fraseri DNA, rpoC2 gene for RNA polymerase bata-subunit, partial cds, and rpoC2-rps2 intergenic spacer Length = 518 Score = 87.7 bits (44), Expect = 4e-14 Identities = 86/100 (86%) Strand = Plus / Minus Query: 77 ttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaact 136 ||||| |||||||||||||||| ||| || |||||| |||| |||||||| ||||| || Sbjct: 100 ttttccttcaagcctttcaaccgatcgatacgaccttgtagagcagctttagctaagacc 41 Query: 137 cgagcagtttcttgaaaacttgcttcagatatgaaacttt 176 ||||||||||| || ||||| ||||| ||||| ||||||| Sbjct: 40 cgagcagtttcctggaaactcgcttcggatataaaacttt 1
>dbj|AB029685.1| Abies firma DNA, rpoC2 gene for RNA polymerase bata-subunit, partial cds, and rpoC2-rps2 intergenic spacer Length = 522 Score = 87.7 bits (44), Expect = 4e-14 Identities = 86/100 (86%) Strand = Plus / Minus Query: 77 ttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaact 136 ||||| |||||||||||||||| ||| || |||||| |||| |||||||| ||||| || Sbjct: 100 ttttccttcaagcctttcaaccgatcgatacgaccttgtagagcagctttagctaagacc 41 Query: 137 cgagcagtttcttgaaaacttgcttcagatatgaaacttt 176 ||||||||||| || ||||| ||||| ||||| ||||||| Sbjct: 40 cgagcagtttcctggaaactcgcttcggatataaaacttt 1
>dbj|AB029684.1| Abies fargesii DNA, rpoC2 gene for RNA polymerase bata-subunit, partial cds, and rpoC2-rps2 intergenic spacer Length = 522 Score = 87.7 bits (44), Expect = 4e-14 Identities = 86/100 (86%) Strand = Plus / Minus Query: 77 ttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaact 136 ||||| |||||||||||||||| ||| || |||||| |||| |||||||| ||||| || Sbjct: 100 ttttccttcaagcctttcaaccgatcgatacgaccttgtagagcagctttagctaagacc 41 Query: 137 cgagcagtttcttgaaaacttgcttcagatatgaaacttt 176 ||||||||||| || ||||| ||||| ||||| ||||||| Sbjct: 40 cgagcagtttcctggaaactcgcttcggatataaaacttt 1
>dbj|AB029683.1| Abies fabri DNA, rpoC2 gene for RNA polymerase bata-subunit, partial cds, and rpoC2-rps2 intergenic spacer Length = 509 Score = 87.7 bits (44), Expect = 4e-14 Identities = 86/100 (86%) Strand = Plus / Minus Query: 77 ttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaact 136 ||||| |||||||||||||||| ||| || |||||| |||| |||||||| ||||| || Sbjct: 100 ttttccttcaagcctttcaaccgatcgatacgaccttgtagagcagctttagctaagacc 41 Query: 137 cgagcagtttcttgaaaacttgcttcagatatgaaacttt 176 ||||||||||| || ||||| ||||| ||||| ||||||| Sbjct: 40 cgagcagtttcctggaaactcgcttcggatataaaacttt 1
>gb|AC136501.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0044M15, complete sequence Length = 144568 Score = 83.8 bits (42), Expect = 6e-13 Identities = 63/70 (90%) Strand = Plus / Plus Query: 325 cacttttgatgttacttggcgtataataatctctatatgtctattatggatctgtacccc 384 |||||||||||||||||| || | ||||||||| ||||||||||||||||||||||| || Sbjct: 60416 cacttttgatgttacttgacgcacaataatctcgatatgtctattatggatctgtactcc 60475 Query: 385 ttgggatcga 394 ||| ||||| Sbjct: 60476 ctggtatcga 60485
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 83.8 bits (42), Expect = 6e-13 Identities = 63/70 (90%) Strand = Plus / Minus Query: 325 cacttttgatgttacttggcgtataataatctctatatgtctattatggatctgtacccc 384 |||||||||||||||||| || | ||||||||| ||||||||||||||||||||||| || Sbjct: 10757056 cacttttgatgttacttgacgcacaataatctcgatatgtctattatggatctgtactcc 10756997 Query: 385 ttgggatcga 394 ||| ||||| Sbjct: 10756996 ctggtatcga 10756987 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 401 ttttggattttattaaccaaa 421 ||||||||||||||||||||| Sbjct: 24308258 ttttggattttattaaccaaa 24308238
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 83.8 bits (42), Expect = 6e-13 Identities = 63/70 (90%) Strand = Plus / Minus Query: 325 cacttttgatgttacttggcgtataataatctctatatgtctattatggatctgtacccc 384 |||||||||||||||||| || | ||||||||| ||||||||||||||||||||||| || Sbjct: 10836245 cacttttgatgttacttgacgcacaataatctcgatatgtctattatggatctgtactcc 10836186 Query: 385 ttgggatcga 394 ||| ||||| Sbjct: 10836185 ctggtatcga 10836176 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 401 ttttggattttattaaccaaa 421 ||||||||||||||||||||| Sbjct: 24619927 ttttggattttattaaccaaa 24619907
>gb|DQ279899.1| Crithopsis delileana translation initiation factor gene, partial cds Length = 1494 Score = 81.8 bits (41), Expect = 2e-12 Identities = 41/41 (100%) Strand = Plus / Minus Query: 1 gttcttgtcttgtggggaacgatgcacaaatttttggaatc 41 ||||||||||||||||||||||||||||||||||||||||| Sbjct: 584 gttcttgtcttgtggggaacgatgcacaaatttttggaatc 544
>dbj|AB206661.1| Symplocarpus nipponicus chloroplast rps2, rpoC2 genes for ribosomal protein S2, RNA polymerase beta'' subunit, partial cds Length = 929 Score = 79.8 bits (40), Expect = 9e-12 Identities = 75/89 (84%) Strand = Plus / Plus Query: 29 aatttttggaatccggtaccaacaggtataatnnnnnnnagaactacgttttctttcaag 88 ||||||| |||||||||||||||||||||||| ||||| || || ||||||| Sbjct: 840 aattttttgaatccggtaccaacaggtataatcccccccagaacaacattctctttcagt 899 Query: 89 cctttcaaccaatcaatgcgacctcgtag 117 ||||||||||||||||| ||||||||||| Sbjct: 900 cctttcaaccaatcaatacgacctcgtag 928
>dbj|AB077118.1| Prunus persica mRNA, microsatellite marker MA004b Length = 276 Score = 77.8 bits (39), Expect = 3e-11 Identities = 66/75 (88%) Strand = Plus / Plus Query: 414 taaccaaagaaatacgactttgggctatggttagctcagctccaatcaagaatccccaag 473 |||||||||| ||||||||||| |||| ||||||||||| |||||||| |||||||||| Sbjct: 1 taaccaaagagatacgactttgtactatagttagctcagcaccaatcaaaaatccccaag 60 Query: 474 ggaccccaagaattc 488 | | |||||||||| Sbjct: 61 gaattccaagaattc 75
>gb|AY178864.1| Adiantum capillus-veneris chloroplast, complete genome Length = 150568 Score = 75.8 bits (38), Expect = 1e-10 Identities = 74/86 (86%) Strand = Plus / Plus Query: 77 ttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaact 136 ||||||||||| || |||| ||||||||| || || || ||||||||||| || || ||| Sbjct: 16022 ttttctttcaaccccttcagccaatcaattcggccgcgaagggcagctttagccaatact 16081 Query: 137 cgagcagtttcttgaaaacttgcttc 162 |||| |||||||||||||||||||| Sbjct: 16082 cgagtggtttcttgaaaacttgcttc 16107
>emb|X04465.1|CHMPXX Marchantia polymorpha chloroplast genome DNA Length = 121024 Score = 69.9 bits (35), Expect = 8e-09 Identities = 89/107 (83%) Strand = Plus / Minus Query: 77 ttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaact 136 |||||||| || ||||| ||||| ||||| || ||| || |||||||||||||||||| Sbjct: 15733 ttttcttttaaaccttttaaccagtcaattcggccttttaacgcagcttttgctaaaact 15674 Query: 137 cgagcagtttcttgaaaacttgcttcagatatgaaactttgggtatt 183 | | ||||||||||||||| ||||| || || |||||||| ||||| Sbjct: 15673 cttgtagtttcttgaaaactagcttctgaaataaaactttgagtatt 15627
>emb|X70810.2|CLEGCGA Euglena gracilis chloroplast complete genome Length = 143171 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Plus Query: 119 gcagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttg 177 |||||||||| |||||||| || ||||||||||||||| |||| || ||| |||||||| Sbjct: 102965 gcagcttttgttaaaactctagtagtttcttgaaaactcgcttgagctataaaactttg 103023
>emb|X17191.1|CHEGRPO E.gracilis chloroplast RNA polymerase rpoB-rpoC1-rpoC2 operon Length = 12840 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 119 gcagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttg 177 |||||||||| |||||||| || ||||||||||||||| |||| || ||| |||||||| Sbjct: 12749 gcagcttttgttaaaactctagtagtttcttgaaaactcgcttgagctataaaactttg 12691
>gb|M22010.1|EGRCPRPS Euglena gracilis chloroplast ribosomal proteins S4 and S11 genes, complete cds, RNA polymerase subunit (rpoC2) gene, 3' end and tRNA genes Length = 3343 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 119 gcagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttg 177 |||||||||| |||||||| || ||||||||||||||| |||| || ||| |||||||| Sbjct: 650 gcagcttttgttaaaactctagtagtttcttgaaaactcgcttgagctataaaactttg 592
>emb|V00160.1|CHEGTN E. gracilis genes for val, asn, arg and leu tRNAs Length = 1600 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 119 gcagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttg 177 |||||||||| |||||||| || ||||||||||||||| |||| || ||| |||||||| Sbjct: 649 gcagcttttgttaaaactctagtagtttcttgaaaactcgcttgagctataaaactttg 591
>gb|AF166114.1|AF166114 Mesostigma viride chloroplast DNA, complete genome Length = 118360 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 143 gtttcttgaaaacttgcttcagatatgaaacttt 176 |||||||||||||||||| ||||||| ||||||| Sbjct: 32408 gtttcttgaaaacttgctgcagatataaaacttt 32441
>dbj|AP004854.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1521_G01 Length = 144102 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 23 tgcacaaatttttggaatccggtaccaacaggtataat 60 ||||||||||||| ||||| ||||| |||||||||||| Sbjct: 126822 tgcacaaatttttagaatctggtactaacaggtataat 126859
>gb|U30821.1|CPU30821 Cyanophora paradoxa cyanelle, complete genome Length = 135599 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Plus Query: 122 gcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggta 181 |||||||||||||| |||| |||||||| ||||||||| |||| || || ||||| ||| Sbjct: 75461 gcttttgctaaaacacgagttgtttcttggaaacttgctgcagaaataaagctttgagta 75520 Query: 182 tt 183 || Sbjct: 75521 tt 75522
>gb|AC146310.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone B1082A06, complete sequence Length = 135774 Score = 50.1 bits (25), Expect = 0.008 Identities = 37/41 (90%) Strand = Plus / Plus Query: 519 tcctttcgagattgggggataatgaatcaattgaacgcgct 559 ||||||||||||| | |||| ||||||||||||||||||| Sbjct: 10739 tcctttcgagattcagcgatagtgaatcaattgaacgcgct 10779
>gb|AC091680.7| Oryza sativa chromosome 10 BAC OSJNBa0034L04 genomic sequence, complete sequence Length = 148611 Score = 50.1 bits (25), Expect = 0.008 Identities = 34/37 (91%) Strand = Plus / Minus Query: 1 gttcttgtcttgtggggaacgatgcacaaatttttgg 37 |||||||| ||||||| |||| ||||||||||||||| Sbjct: 142712 gttcttgttttgtgggtaacggtgcacaaatttttgg 142676
>gb|AC079935.3| Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone OSJNBa0095C06, from Chromosome 10, complete sequence Length = 156159 Score = 50.1 bits (25), Expect = 0.008 Identities = 37/41 (90%) Strand = Plus / Plus Query: 519 tcctttcgagattgggggataatgaatcaattgaacgcgct 559 ||||||||||||| | |||| ||||||||||||||||||| Sbjct: 140797 tcctttcgagattcagcgatagtgaatcaattgaacgcgct 140837
>gb|AC074232.11| Oryza sativa chromosome 10 BAC OSJNBb0005J14 genomic sequence, complete sequence Length = 116932 Score = 50.1 bits (25), Expect = 0.008 Identities = 34/37 (91%) Strand = Plus / Minus Query: 1 gttcttgtcttgtggggaacgatgcacaaatttttgg 37 |||||||| ||||||| |||| ||||||||||||||| Sbjct: 20565 gttcttgttttgtgggtaacggtgcacaaatttttgg 20529
>ref|NM_197459.1| Oryza sativa (japonica cultivar-group) RNA polymerase beta' subunit-2 5'-partial (OSJNBa0034L04.39), mRNA Length = 183 Score = 48.1 bits (24), Expect = 0.031 Identities = 33/36 (91%) Strand = Plus / Minus Query: 1 gttcttgtcttgtggggaacgatgcacaaatttttg 36 |||||||| ||||||| |||| |||||||||||||| Sbjct: 36 gttcttgttttgtgggtaacggtgcacaaatttttg 1
>gb|AY299195.1| Chenopodium rubrum ribosomal protein S2 and ATPase subunit IV bicistronic mRNA, complete cds; nuclear genes for plastid products Length = 2711 Score = 46.1 bits (23), Expect = 0.12 Identities = 56/67 (83%) Strand = Plus / Minus Query: 68 agaactacgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagctttt 127 ||||| ||||||||||| || |||| ||||||||| || || || || || || |||||| Sbjct: 67 agaacaacgttttcttttaatccttgcaaccaatcgatacggccccggagagccgctttt 8 Query: 128 gctaaaa 134 ||||||| Sbjct: 7 gctaaaa 1
>gb|AC116875.10| Mus musculus chromosome 8, clone RP24-426B21, complete sequence Length = 188938 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 437 gctatggttagctcagctcca 457 ||||||||||||||||||||| Sbjct: 153544 gctatggttagctcagctcca 153524
>gb|AC125782.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0095P22, complete sequence Length = 162766 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 401 ttttggattttattaaccaaa 421 ||||||||||||||||||||| Sbjct: 109367 ttttggattttattaaccaaa 109347
>emb|AL035469.7|HS46B1 Human DNA sequence from clone RP1-46B1 on chromosome 6q12, complete sequence Length = 158204 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 138 gagcagtttcttgaaaacttgcttc 162 |||||| |||||||||||||||||| Sbjct: 29539 gagcagcttcttgaaaacttgcttc 29563
>gb|AC145349.1| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0096I10, complete sequence Length = 171946 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 401 ttttggattttattaaccaaa 421 ||||||||||||||||||||| Sbjct: 100731 ttttggattttattaaccaaa 100751
>ref|NM_166703.1| Drosophila melanogaster epithelial membrane protein CG2727-RC, transcript variant C (emp), mRNA Length = 2378 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 110 cctcgtagggcagcttttgct 130 ||||||||||||||||||||| Sbjct: 982 cctcgtagggcagcttttgct 962
>ref|NM_166702.1| Drosophila melanogaster epithelial membrane protein CG2727-RB, transcript variant B (emp), mRNA Length = 2256 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 110 cctcgtagggcagcttttgct 130 ||||||||||||||||||||| Sbjct: 860 cctcgtagggcagcttttgct 840
>ref|NM_079135.2| Drosophila melanogaster epithelial membrane protein CG2727-RA, transcript variant A (emp), mRNA Length = 2284 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 110 cctcgtagggcagcttttgct 130 ||||||||||||||||||||| Sbjct: 888 cctcgtagggcagcttttgct 868
>gb|AY070494.1| Drosophila melanogaster GH06663 full length cDNA Length = 2994 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 110 cctcgtagggcagcttttgct 130 ||||||||||||||||||||| Sbjct: 1574 cctcgtagggcagcttttgct 1554
>gb|AC007884.5|AC007884 Drosophila melanogaster, chromosome 2R, region 60F-60F, BAC clone BACR08I14, complete sequence Length = 190616 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 110 cctcgtagggcagcttttgct 130 ||||||||||||||||||||| Sbjct: 138408 cctcgtagggcagcttttgct 138428
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 247 ccctgctcgttccgctcgcaa 267 ||||||||||||||||||||| Sbjct: 3482790 ccctgctcgttccgctcgcaa 3482770
>gb|AE003465.3| Drosophila melanogaster chromosome 2R, section 72 of 73 of the complete sequence Length = 343833 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 110 cctcgtagggcagcttttgct 130 ||||||||||||||||||||| Sbjct: 290712 cctcgtagggcagcttttgct 290732
>gb|BT001535.1| Drosophila melanogaster RE08130 full insert cDNA Length = 2296 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 110 cctcgtagggcagcttttgct 130 ||||||||||||||||||||| Sbjct: 888 cctcgtagggcagcttttgct 868
>gb|AF494278.1| Chaetosphaeridium globosum chloroplast, complete genome Length = 131183 Score = 42.1 bits (21), Expect = 1.9 Identities = 108/137 (78%) Strand = Plus / Minus Query: 77 ttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaact 136 |||||||| ||||||| |||||||| || | |||| | || |||||||||| | |||| Sbjct: 15895 ttttcttttaagccttgtaaccaatctattctaccttgaagagcagcttttgtaagaact 15836 Query: 137 cgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaagccctt 196 | ||||||||||||||| ||||| || || ||||| | ||||| | ||||| ||| Sbjct: 15835 ttggtagtttcttgaaaactagcttctgaaataaaactgtaagtatttaaagaagctctt 15776 Query: 197 gttattcccaataagat 213 |||||||| || ||||| Sbjct: 15775 gttattcctaacaagat 15759
>emb|X73332.1|DMEMP D.melanogaster emp mRNA Length = 2291 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 110 cctcgtagggcagcttttgct 130 ||||||||||||||||||||| Sbjct: 886 cctcgtagggcagcttttgct 866
>gb|AY363680.1| Yersinia aldovae urease gene locus, and Yut (yut) genes, complete cds Length = 7232 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 408 ttttattaaccaaagaaata 427 |||||||||||||||||||| Sbjct: 2726 ttttattaaccaaagaaata 2707
>gb|AC005249.2| Homo sapiens BAC clone GS1-115J1 from 7, complete sequence Length = 162531 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 tttcttgaaaacttgcttca 163 |||||||||||||||||||| Sbjct: 118236 tttcttgaaaacttgcttca 118255
>gb|AC004903.2| Homo sapiens PAC clone RP5-828B12 from 7, complete sequence Length = 118869 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 401 ttttggattttattaaccaa 420 |||||||||||||||||||| Sbjct: 8177 ttttggattttattaaccaa 8158
>gb|AC145519.1| Pan troglodytes BAC clone RP43-32M13 from 7, complete sequence Length = 155340 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 tttcttgaaaacttgcttca 163 |||||||||||||||||||| Sbjct: 57713 tttcttgaaaacttgcttca 57732
>gb|AC142284.1| Pan troglodytes BAC clone RP43-163P11 from 7, complete sequence Length = 171686 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 401 ttttggattttattaaccaa 420 |||||||||||||||||||| Sbjct: 129713 ttttggattttattaaccaa 129694
>emb|AL732437.12| Human DNA sequence from clone RP11-116G8 on chromosome 10 Contains the NET1 gene for neuroepithelial cell transforming gene 1, the gene for calmodulin-like skin protein (CLSP), the CALML3 gene for calmodulin-like 3 (CLP) and four CpG islands, complete sequence Length = 183441 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 176 tgggtattcagggaagccct 195 |||||||||||||||||||| Sbjct: 73228 tgggtattcagggaagccct 73209
>emb|AL662957.2|OSJN00157 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0013K16, complete sequence Length = 145739 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 401 ttttggattttattaaccaa 420 |||||||||||||||||||| Sbjct: 105847 ttttggattttattaaccaa 105866
>dbj|AK128534.1| Homo sapiens cDNA FLJ46692 fis, clone TRACH3012718 Length = 4123 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 176 tgggtattcagggaagccct 195 |||||||||||||||||||| Sbjct: 1872 tgggtattcagggaagccct 1853
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 401 ttttggattttattaaccaa 420 |||||||||||||||||||| Sbjct: 6482744 ttttggattttattaaccaa 6482763
>gb|AC108037.3| Homo sapiens BAC clone RP11-168E17 from 4, complete sequence Length = 73477 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 350 ataatctctatatgtctatt 369 |||||||||||||||||||| Sbjct: 8980 ataatctctatatgtctatt 8961
>gb|AC016647.7| Homo sapiens chromosome 16 clone RP11-89G14, complete sequence Length = 160358 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 ctacgttttctttcaagcct 91 |||||||||||||||||||| Sbjct: 108631 ctacgttttctttcaagcct 108612
>dbj|AP004769.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0017C12 Length = 135356 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 401 ttttggattttattaaccaa 420 |||||||||||||||||||| Sbjct: 70542 ttttggattttattaaccaa 70561
>dbj|AP003963.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1779_B07 Length = 151427 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 401 ttttggattttattaaccaa 420 |||||||||||||||||||| Sbjct: 139311 ttttggattttattaaccaa 139330
>dbj|AP003805.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1080_F08 Length = 94139 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 401 ttttggattttattaaccaa 420 |||||||||||||||||||| Sbjct: 39833 ttttggattttattaaccaa 39852
>emb|AL132952.1|CEY51H4A Caenorhabditis elegans YAC Y51H4A, complete sequence Length = 269619 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 125 tttgctaaaactcgagcagtttct 148 |||| ||||||||||||||||||| Sbjct: 46250 tttgttaaaactcgagcagtttct 46227 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 125 tttgctaaaactcgagcagtttct 148 |||| ||||||||||||||||||| Sbjct: 43012 tttgttaaaactcgagcagtttct 42989
>gb|AC087362.13| Homo sapiens chromosome 8, clone RP11-513D5, complete sequence Length = 142170 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 408 ttttattaaccaaagaaata 427 |||||||||||||||||||| Sbjct: 56911 ttttattaaccaaagaaata 56930
>emb|AL831877.1|HSM803202 Homo sapiens mRNA; cDNA DKFZp547H1510 (from clone DKFZp547H1510) Length = 546 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 176 tgggtattcagggaagccct 195 |||||||||||||||||||| Sbjct: 96 tgggtattcagggaagccct 77
>dbj|AP006715.1| Porphyra yezoensis chloroplast DNA, complete genome Length = 191952 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 142 agtttcttgaaaacttgcttcaga 165 ||||||||||||||||||| |||| Sbjct: 49857 agtttcttgaaaacttgctgcaga 49880 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,174,299 Number of Sequences: 3902068 Number of extensions: 4174299 Number of successful extensions: 74061 Number of sequences better than 10.0: 164 Number of HSP's better than 10.0 without gapping: 171 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 72881 Number of HSP's gapped (non-prelim): 1112 length of query: 559 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 536 effective length of database: 17,143,297,704 effective search space: 9188807569344 effective search space used: 9188807569344 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
