ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd23c17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SHP_RAT (P97947) Nuclear receptor 0B2 (Orphan nuclear receptor S... 32 1.3
2DFRA_VITVI (P51110) Dihydroflavonol-4-reductase (EC 1.1.1.219) (... 30 6.5

>SHP_RAT (P97947) Nuclear receptor 0B2 (Orphan nuclear receptor SHP) (Small|
           heterodimer partner)
          Length = 260

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
 Frame = +1

Query: 49  FSLVFGPKDYHYLAKHSLKCSYQPGKSGIHVAC-LAGLVQ-----ICTSDQPYFPSQEKK 210
           +SL  GPK+Y YL    L   + P   G+H +C +A L Q     +C   +P++P+ + +
Sbjct: 160 WSLELGPKEYAYLKGTIL---FNPDVPGLHASCHIAHLQQEAHWALCEVLEPWYPASQGR 216

Query: 211 EYRYL 225
             R L
Sbjct: 217 LARIL 221



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>DFRA_VITVI (P51110) Dihydroflavonol-4-reductase (EC 1.1.1.219) (DFR)|
           (Dihydrokaempferol 4-reductase)
          Length = 337

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
 Frame = -3

Query: 657 DFLADAHVAAYECPTAFGRYLCFNNVVCRPEDALQFAQMLAPSAPCY--PPRYSTVHFN- 487
           D L +AH+  +E P A GRY+C ++        L  A+ML    P Y  P  +  V  N 
Sbjct: 232 DDLCNAHIYLFENPKAEGRYICSSHDCI----ILDLAKMLREKYPEYNIPTEFKGVDENL 287

Query: 486 E*VFISTKK 460
           + V  S+KK
Sbjct: 288 KSVCFSSKK 296


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,127,817
Number of Sequences: 219361
Number of extensions: 1693421
Number of successful extensions: 3358
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3358
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6427774254
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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