ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd22n16 |
|---|---|
| Clone Library Name | barley_pub |
>YCX4_OENHO (Q9MTN4) Hypothetical 8.4 kDa protein in ycf9-trnS intergenic| region (ORF75) Length = 75 Score = 48.9 bits (115), Expect = 3e-06 Identities = 23/30 (76%), Positives = 28/30 (93%) Frame = +1 Query: 22 ITKTEEVAINAKTANWKALVIFLILQATIK 111 I+K++EVAINAKTANWKA+V+ LILQAT K Sbjct: 41 ISKSDEVAINAKTANWKAIVMLLILQATNK 70
>PSBZ_WHEAT (P69695) Photosystem II reaction center Z protein| Length = 62 Score = 37.7 bits (86), Expect = 0.008 Identities = 20/21 (95%), Positives = 20/21 (95%) Frame = -3 Query: 83 MTSAFQLAVFALIATSSVLVI 21 MT AFQLAVFALIATSSVLVI Sbjct: 1 MTIAFQLAVFALIATSSVLVI 21
>PSBZ_SACOF (Q6ENX9) Photosystem II reaction center Z protein| Length = 62 Score = 37.7 bits (86), Expect = 0.008 Identities = 20/21 (95%), Positives = 20/21 (95%) Frame = -3 Query: 83 MTSAFQLAVFALIATSSVLVI 21 MT AFQLAVFALIATSSVLVI Sbjct: 1 MTIAFQLAVFALIATSSVLVI 21
>PSBZ_SACHY (Q6L3B0) Photosystem II reaction center Z protein| Length = 62 Score = 37.7 bits (86), Expect = 0.008 Identities = 20/21 (95%), Positives = 20/21 (95%) Frame = -3 Query: 83 MTSAFQLAVFALIATSSVLVI 21 MT AFQLAVFALIATSSVLVI Sbjct: 1 MTIAFQLAVFALIATSSVLVI 21
>PSBZ_HORVU (P69696) Photosystem II reaction center Z protein| Length = 62 Score = 37.7 bits (86), Expect = 0.008 Identities = 20/21 (95%), Positives = 20/21 (95%) Frame = -3 Query: 83 MTSAFQLAVFALIATSSVLVI 21 MT AFQLAVFALIATSSVLVI Sbjct: 1 MTIAFQLAVFALIATSSVLVI 21
>PSBZ_SPIOL (Q9M3M6) Photosystem II reaction center Z protein| Length = 62 Score = 36.2 bits (82), Expect = 0.023 Identities = 18/21 (85%), Positives = 20/21 (95%) Frame = -3 Query: 83 MTSAFQLAVFALIATSSVLVI 21 MT AFQLAVFALIATSS+L+I Sbjct: 1 MTIAFQLAVFALIATSSILLI 21
>PSBZ_PANGI (Q68S09) Photosystem II reaction center Z protein| Length = 62 Score = 36.2 bits (82), Expect = 0.023 Identities = 18/21 (85%), Positives = 20/21 (95%) Frame = -3 Query: 83 MTSAFQLAVFALIATSSVLVI 21 MT AFQLAVFALIATSS+L+I Sbjct: 1 MTLAFQLAVFALIATSSILLI 21
>PSBZ_ORYSA (P12194) Photosystem II reaction center Z protein| Length = 62 Score = 36.2 bits (82), Expect = 0.023 Identities = 19/21 (90%), Positives = 19/21 (90%) Frame = -3 Query: 83 MTSAFQLAVFALIATSSVLVI 21 MT AFQLAVFALI TSSVLVI Sbjct: 1 MTIAFQLAVFALIVTSSVLVI 21
>PSBZ_ORYNI (Q6ENI9) Photosystem II reaction center Z protein| Length = 62 Score = 36.2 bits (82), Expect = 0.023 Identities = 19/21 (90%), Positives = 19/21 (90%) Frame = -3 Query: 83 MTSAFQLAVFALIATSSVLVI 21 MT AFQLAVFALI TSSVLVI Sbjct: 1 MTIAFQLAVFALIVTSSVLVI 21
>PSBZ_NYMAL (Q6EW51) Photosystem II reaction center Z protein| Length = 62 Score = 36.2 bits (82), Expect = 0.023 Identities = 18/21 (85%), Positives = 20/21 (95%) Frame = -3 Query: 83 MTSAFQLAVFALIATSSVLVI 21 MT AFQLAVFALIATSS+L+I Sbjct: 1 MTIAFQLAVFALIATSSILLI 21
>PSBZ_MAGTR (Q5IHA8) Photosystem II reaction center Z protein| Length = 62 Score = 36.2 bits (82), Expect = 0.023 Identities = 18/21 (85%), Positives = 20/21 (95%) Frame = -3 Query: 83 MTSAFQLAVFALIATSSVLVI 21 MT AFQLAVFALIATSS+L+I Sbjct: 1 MTIAFQLAVFALIATSSILLI 21
>PSBZ_MAGAC (Q5IHB0) Photosystem II reaction center Z protein| Length = 62 Score = 36.2 bits (82), Expect = 0.023 Identities = 18/21 (85%), Positives = 20/21 (95%) Frame = -3 Query: 83 MTSAFQLAVFALIATSSVLVI 21 MT AFQLAVFALIATSS+L+I Sbjct: 1 MTIAFQLAVFALIATSSILLI 21
>PSBZ_LOTJA (Q9BBT2) Photosystem II reaction center Z protein| Length = 62 Score = 36.2 bits (82), Expect = 0.023 Identities = 18/21 (85%), Positives = 20/21 (95%) Frame = -3 Query: 83 MTSAFQLAVFALIATSSVLVI 21 MT AFQLAVFALIATSS+L+I Sbjct: 1 MTIAFQLAVFALIATSSILLI 21
>PSBZ_LIRTU (Q5IHA9) Photosystem II reaction center Z protein| Length = 62 Score = 36.2 bits (82), Expect = 0.023 Identities = 18/21 (85%), Positives = 20/21 (95%) Frame = -3 Query: 83 MTSAFQLAVFALIATSSVLVI 21 MT AFQLAVFALIATSS+L+I Sbjct: 1 MTIAFQLAVFALIATSSILLI 21
>PSBZ_AMBTC (Q70Y06) Photosystem II reaction center Z protein| Length = 62 Score = 36.2 bits (82), Expect = 0.023 Identities = 18/21 (85%), Positives = 20/21 (95%) Frame = -3 Query: 83 MTSAFQLAVFALIATSSVLVI 21 MT AFQLAVFALIATSS+L+I Sbjct: 1 MTIAFQLAVFALIATSSILLI 21
>PSBZ_MAIZE (Q33300) Photosystem II reaction center Z protein| Length = 62 Score = 35.8 bits (81), Expect = 0.030 Identities = 19/21 (90%), Positives = 19/21 (90%) Frame = -3 Query: 83 MTSAFQLAVFALIATSSVLVI 21 M AFQLAVFALIATSSVLVI Sbjct: 1 MNIAFQLAVFALIATSSVLVI 21
>PSBZ_ACOGR (Q5QA82) Photosystem II reaction center Z protein| Length = 62 Score = 35.8 bits (81), Expect = 0.030 Identities = 17/21 (80%), Positives = 20/21 (95%) Frame = -3 Query: 83 MTSAFQLAVFALIATSSVLVI 21 MT AFQLA+FALIATSS+L+I Sbjct: 1 MTIAFQLAIFALIATSSILLI 21
>PSBZ_OENHO (Q9MTN5) Photosystem II reaction center Z protein| Length = 62 Score = 35.4 bits (80), Expect = 0.039 Identities = 18/21 (85%), Positives = 20/21 (95%) Frame = -3 Query: 83 MTSAFQLAVFALIATSSVLVI 21 MT AFQLAVFALIATSS+L+I Sbjct: 1 MTIAFQLAVFALIATSSLLLI 21
>PSBZ_PEA (Q32902) Photosystem II reaction center Z protein| Length = 62 Score = 34.7 bits (78), Expect = 0.067 Identities = 17/21 (80%), Positives = 19/21 (90%) Frame = -3 Query: 83 MTSAFQLAVFALIATSSVLVI 21 MT AFQLAVFALI TSS+L+I Sbjct: 1 MTIAFQLAVFALIVTSSILLI 21
>PSBZ_ARATH (P56790) Photosystem II reaction center Z protein| Length = 62 Score = 34.3 bits (77), Expect = 0.088 Identities = 17/21 (80%), Positives = 19/21 (90%) Frame = -3 Query: 83 MTSAFQLAVFALIATSSVLVI 21 MT AFQLAVFALI TSS+L+I Sbjct: 1 MTIAFQLAVFALIITSSILLI 21
>PSBZ_ANTFO (P59705) Photosystem II reaction center Z protein| Length = 62 Score = 34.3 bits (77), Expect = 0.088 Identities = 18/21 (85%), Positives = 19/21 (90%) Frame = -3 Query: 83 MTSAFQLAVFALIATSSVLVI 21 MT AFQLAVFALIATS +LVI Sbjct: 1 MTIAFQLAVFALIATSFLLVI 21
>PSBZ_TOBAC (P09974) Photosystem II reaction center Z protein| Length = 62 Score = 33.9 bits (76), Expect = 0.11 Identities = 17/21 (80%), Positives = 19/21 (90%) Frame = -3 Query: 83 MTSAFQLAVFALIATSSVLVI 21 MT AFQLAVFALIATS +L+I Sbjct: 1 MTLAFQLAVFALIATSLILLI 21
>PSBZ_CALFE (Q7YJX5) Photosystem II reaction center Z protein| Length = 62 Score = 33.9 bits (76), Expect = 0.11 Identities = 17/21 (80%), Positives = 19/21 (90%) Frame = -3 Query: 83 MTSAFQLAVFALIATSSVLVI 21 M AFQLAVFALIATSS+L+I Sbjct: 1 MIIAFQLAVFALIATSSILLI 21
>PSBZ_ATRBE (P59706) Photosystem II reaction center Z protein| Length = 62 Score = 33.9 bits (76), Expect = 0.11 Identities = 17/21 (80%), Positives = 19/21 (90%) Frame = -3 Query: 83 MTSAFQLAVFALIATSSVLVI 21 MT AFQLAVFALIATS +L+I Sbjct: 1 MTLAFQLAVFALIATSLILLI 21
>PSBZ_ADICA (Q85FM4) Photosystem II reaction center Z protein| Length = 62 Score = 32.3 bits (72), Expect = 0.33 Identities = 15/21 (71%), Positives = 19/21 (90%) Frame = -3 Query: 83 MTSAFQLAVFALIATSSVLVI 21 MT+AFQ A+FALIATS +LV+ Sbjct: 1 MTTAFQFALFALIATSFLLVV 21
>PSBZ_MARPO (P09973) Photosystem II reaction center Z protein| Length = 62 Score = 32.0 bits (71), Expect = 0.44 Identities = 17/21 (80%), Positives = 18/21 (85%) Frame = -3 Query: 83 MTSAFQLAVFALIATSSVLVI 21 MT AFQLAVFALIA S +LVI Sbjct: 1 MTIAFQLAVFALIAISFLLVI 21
>PSBZ_PINTH (P41642) Photosystem II reaction center Z protein| Length = 62 Score = 29.6 bits (65), Expect = 2.2 Identities = 16/21 (76%), Positives = 17/21 (80%) Frame = -3 Query: 83 MTSAFQLAVFALIATSSVLVI 21 MT AFQ AVFALIA S +LVI Sbjct: 1 MTIAFQSAVFALIAISFLLVI 21
>PSBZ_CRYJA (Q5IHA3) Photosystem II reaction center Z protein| Length = 62 Score = 29.6 bits (65), Expect = 2.2 Identities = 15/21 (71%), Positives = 18/21 (85%) Frame = -3 Query: 83 MTSAFQLAVFALIATSSVLVI 21 MT AFQ +VFALIA S++LVI Sbjct: 1 MTIAFQSSVFALIAISTLLVI 21
>SEPR_MOUSE (P97321) Seprase (EC 3.4.21.-) (Fibroblast activation protein| alpha) (Integral membrane serine protease) Length = 761 Score = 29.6 bits (65), Expect = 2.2 Identities = 12/32 (37%), Positives = 19/32 (59%) Frame = +1 Query: 13 VHYITKTEEVAINAKTANWKALVIFLILQATI 108 +HYI T E AI + W+A+ IF + Q ++ Sbjct: 377 IHYIKDTVENAIQITSGKWEAIYIFRVTQDSL 408
>SEPR_HUMAN (Q12884) Seprase (EC 3.4.21.-) (Fibroblast activation protein| alpha) (Integral membrane serine protease) (170-kDa melanoma membrane-bound gelatinase) Length = 760 Score = 28.9 bits (63), Expect = 3.7 Identities = 12/32 (37%), Positives = 19/32 (59%) Frame = +1 Query: 13 VHYITKTEEVAINAKTANWKALVIFLILQATI 108 +HYI T E AI + W+A+ IF + Q ++ Sbjct: 377 IHYIKDTVENAIQITSGKWEAINIFRVTQDSL 408
>PSBZ_MESVI (Q9MUP9) Photosystem II reaction center Z protein| Length = 62 Score = 28.5 bits (62), Expect = 4.8 Identities = 14/21 (66%), Positives = 17/21 (80%) Frame = -3 Query: 83 MTSAFQLAVFALIATSSVLVI 21 M +AFQL V ALIATS ++VI Sbjct: 1 MLAAFQLTVLALIATSFLMVI 21
>PSBZ_HUPLU (Q5SD09) Photosystem II reaction center Z protein| Length = 62 Score = 28.5 bits (62), Expect = 4.8 Identities = 15/21 (71%), Positives = 16/21 (76%) Frame = -3 Query: 83 MTSAFQLAVFALIATSSVLVI 21 MT AFQLAVFA IA +LVI Sbjct: 1 MTIAFQLAVFASIAIPFILVI 21
>PSBZ_PSINU (Q8WI21) Photosystem II reaction center Z protein| Length = 62 Score = 28.1 bits (61), Expect = 6.3 Identities = 14/21 (66%), Positives = 17/21 (80%) Frame = -3 Query: 83 MTSAFQLAVFALIATSSVLVI 21 MT AF+L+VFALI S +LVI Sbjct: 1 MTIAFELSVFALITISFLLVI 21
>PSBZ_NEPOL (Q9TKX2) Photosystem II reaction center Z protein| Length = 62 Score = 28.1 bits (61), Expect = 6.3 Identities = 13/21 (61%), Positives = 17/21 (80%) Frame = -3 Query: 83 MTSAFQLAVFALIATSSVLVI 21 MT FQLA+FAL+A S +LV+ Sbjct: 1 MTFIFQLALFALVALSFLLVV 21
>PSBZ_CHAGL (Q8M9W6) Photosystem II reaction center Z protein| Length = 62 Score = 27.7 bits (60), Expect = 8.2 Identities = 13/21 (61%), Positives = 17/21 (80%) Frame = -3 Query: 83 MTSAFQLAVFALIATSSVLVI 21 M AFQL+VFAL+A S +LV+ Sbjct: 1 MILAFQLSVFALVAISFLLVV 21 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 26,145,089 Number of Sequences: 219361 Number of extensions: 377124 Number of successful extensions: 840 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 840 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 840 length of database: 80,573,946 effective HSP length: 57 effective length of database: 68,070,369 effective search space used: 1633688856 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
