Clone Name	rbasd22n16
Clone Library Name	barley_pub

---

No.	Definition	Score (bits)	E Value
1	gb|U37703.1|HVU37703 Hordeum vulgare ORF 62 mRNA, chloroplast ge...	400	e-109
2	emb|X02560.1|CHTATRN1 Wheat chloroplast genes for tRNA-Gly (GCC)...	371	e-100
3	dbj|AB027572.1| Triticum aestivum chloroplast DNA, 21.1-kb fragm...	371	e-100
4	dbj|AB042240.3| Triticum aestivum chloroplast DNA, complete genome	371	e-100
5	gb|AY522330.1| Oryza sativa (japonica cultivar-group) cultivar N...	274	1e-70
6	gb|AY522331.1| Oryza sativa (japonica cultivar-group) isolate PA...	274	1e-70
7	gb|AY522329.1| Oryza sativa (indica cultivar-group) isolate 93-1...	274	1e-70
8	gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3	274	1e-70
9	emb|X15901.1|CHOSXX Oryza sativa (japonica cultivar-group) chlor...	274	1e-70
10	emb|BX569685.1|OSJN00291 Oryza sativa genomic DNA, chromosome 4,...	274	1e-70
11	dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D...	274	1e-70
12	dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D...	274	1e-70
13	dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D...	274	1e-70
14	dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D...	274	1e-70
15	gb|AC104433.8| Oryza sativa chromosome 3 BAC OJ1754_E06 genomic ...	274	1e-70
16	dbj|AP003280.2| Oryza sativa (japonica cultivar-group) genomic D...	274	1e-70
17	dbj|AP005408.2| Oryza sativa (japonica cultivar-group) genomic D...	274	1e-70
18	dbj|AP006728.1| Oryza nivara chloroplast DNA, complete genome	274	1e-70
19	gb|AC136521.2| Oryza sativa (japonica cultivar-group) chromosome...	266	3e-68
20	gb|AC130726.2| Oryza sativa (japonica cultivar-group) chromosome...	266	3e-68
21	gb|AC122148.1| Oryza sativa (japonica cultivar-group) chromosome...	266	3e-68
22	gb|AC092750.2| Oryza sativa (japonica cultivar-group) cultivar N...	266	3e-68
23	dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D...	266	3e-68
24	dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D...	266	3e-68
25	gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome...	266	3e-68
26	gb|AE009947.2| Saccharum hybrid cultivar SP-80-3280 chloroplast,...	244	1e-61
27	gb|AY928077.1| Zea mays cultivar B73 chloroplast, complete genome	244	1e-61
28	dbj|AP006714.1| Saccharum officinarum chloroplast DNA, complete ...	244	1e-61
29	emb|X05295.1|CHZPTRNS Zea perennis cpDNA EcoRI-PstI fragment con...	230	2e-57
30	emb|X86563.2|ZMA86563 Zea mays complete chloroplast genome	224	1e-55
31	dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D...	182	3e-43
32	gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome...	182	3e-43
33	emb|BX119952.3|CNS09S4V Oryza sativa chromosome 12, . BAC OSJNBb...	182	3e-43
34	emb|AL954828.3|CNS08CD4 Oryza sativa chromosome 12, . BAC OSJNBa...	182	3e-43
35	ref|XM_465410.1| Oryza sativa (japonica cultivar-group), mRNA	172	3e-40
36	gb|AY727480.1| Trillium texanum PsbZ (psbZ) gene, complete cds; ...	121	1e-24
37	gb|AY727479.1| Trillium ovatum PsbZ (psbZ) gene, complete cds; a...	121	1e-24
38	gb|AY727478.1| Pseudotrillium rivale PsbZ (psbZ) gene, complete ...	121	1e-24
39	gb|AY337664.1| Pandanus princeps isolate Sp_22 chloroplast trnS-...	119	4e-24
40	gb|AY727477.1| Hibiscus mechowii PsbZ (psbZ) gene, complete cds;...	119	4e-24
41	gb|AY727475.1| Hibiscus cannabinus PsbZ (psbZ) gene, complete cd...	119	4e-24
42	emb|AM085641.1| Ranunculus pygmaeus chloroplast psbZ gene for ph...	119	4e-24
43	emb|AM085640.1| Ranunculus pygmaeus chloroplast psbZ gene for ph...	119	4e-24
44	emb|AM085639.1| Ranunculus pygmaeus chloroplast psbZ gene for ph...	119	4e-24
45	emb|AM085638.1| Ranunculus pygmaeus chloroplast psbZ gene for ph...	119	4e-24
46	emb|AM085637.1| Ranunculus pygmaeus chloroplast psbZ gene for ph...	119	4e-24
47	emb|AM085636.1| Ranunculus pygmaeus chloroplast psbZ gene for ph...	119	4e-24
48	emb|AM085635.1| Ranunculus pygmaeus chloroplast psbZ gene for ph...	119	4e-24
49	emb|AM085634.1| Ranunculus pygmaeus chloroplast psbZ gene for ph...	119	4e-24
50	emb|AM085633.1| Ranunculus pygmaeus chloroplast psbZ gene for ph...	119	4e-24
51	emb|AM085632.1| Ranunculus pygmaeus chloroplast psbZ gene for ph...	119	4e-24
52	emb|AM085631.1| Ranunculus pygmaeus chloroplast psbZ gene for ph...	119	4e-24
53	emb|AM085630.1| Ranunculus pygmaeus chloroplast psbZ gene for ph...	119	4e-24
54	gb|DQ345959.1| Gossypium hirsutum cultivar coker 310 FR chloropl...	113	3e-22
55	ref|NM_195973.1| Oryza sativa (japonica cultivar-group) hypothet...	111	1e-21
56	gb|AY337661.1| Cyclanthus bipartitus isolate Sp_19 chloroplast t...	111	1e-21
57	gb|AY337653.1| Pandanus palustris isolate Sp_11 chloroplast trnS...	111	1e-21
58	gb|AY337650.1| Pandanus maximus isolate Sp_8 chloroplast trnS-yc...	111	1e-21
59	gb|AY337644.1| Pandanus eydouxia isolate Sp_2 chloroplast trnS-y...	111	1e-21
60	gb|AY337643.1| Pandanus microcarpus isolate Sp_1 chloroplast trn...	111	1e-21
61	gb|DQ424856.1| Vitis vinifera cultivar Maxxa chloroplast, comple...	111	1e-21
62	gb|AY727476.1| Hibiscus macrophyllus PsbZ (psbZ) gene, complete ...	111	1e-21
63	gb|AY337654.1| Martellidendron hornei isolate Sp_12 chloroplast ...	107	2e-20
64	gb|AY337652.1| Martellidendron hornei isolate Sp_10 chloroplast ...	107	2e-20
65	gb|AY337646.1| Martellidendron cruciatum isolate Sp_4 chloroplas...	107	2e-20
66	gb|AY337645.1| Martellidendron kariangensis isolate Sp_3 chlorop...	107	2e-20
67	gb|AY642483.1| Cypripedium acaule tRNA-Ser (trnS) gene and trnS-...	105	6e-20
68	gb|AY642481.1| Paphiopedilum micranthum tRNA-Ser (trnS) gene and...	105	6e-20
69	gb|AY642469.1| Phragmipedium lindenii tRNA-Ser (trnS) gene and t...	105	6e-20
70	gb|AY642468.1| Phragmipedium sargentianum tRNA-Ser (trnS) gene a...	105	6e-20
71	gb|AY642467.1| Phragmipedium boissierianum tRNA-Ser (trnS) gene ...	105	6e-20
72	gb|AY642466.1| Phragmipedium longifolium tRNA-Ser (trnS) gene an...	105	6e-20
73	gb|AY642465.1| Phragmipedium caudatum tRNA-Ser (trnS) gene and t...	105	6e-20
74	gb|AY337648.1| Pandanus linguiformis isolate Sp_6 chloroplast tr...	105	6e-20
75	gb|AY916449.1| Phalaenopsis aphrodite subsp. formosana plastid, ...	105	6e-20
76	gb|AY642484.1| Cypripedium parviflorum var. parviflorum tRNA-Ser...	103	3e-19
77	gb|DQ069353.1| Typha latifolia photosystem II reaction center Z ...	103	3e-19
78	gb|AY337663.1| Asplundia sp. MWC-2003 isolate Sp_21 chloroplast ...	103	3e-19
79	gb|AY337651.1| Pandanus peyrierasii isolate Sp_9 chloroplast trn...	103	3e-19
80	emb|AJ271079.2|OEL271079 Oenothera elata subsp. hookeri chloropl...	103	3e-19
81	gb|AY727483.1| Prunus virginiana PsbZ (psbZ) gene, complete cds;...	101	1e-18
82	gb|AY727482.1| Prunus nigra PsbZ (psbZ) gene, complete cds; and ...	101	1e-18
83	gb|AY727481.1| Prunus hortulana PsbZ (psbZ) gene, complete cds; ...	101	1e-18
84	emb|AJ627251.1| Nymphaea alba chloroplast, complete genome	100	4e-18
85	gb|AY642482.1| Paphiopedilum niveum tRNA-Ser (trnS) gene and trn...	98	2e-17
86	gb|AY642479.1| Paphiopedilum supardii tRNA-Ser (trnS) gene and t...	98	2e-17
87	gb|AY642478.1| Paphiopedilum concolor tRNA-Ser (trnS) gene and t...	98	2e-17
88	gb|AY642477.1| Paphiopedilum hybrid cultivar tRNA-Ser (trnS) gen...	98	2e-17
89	gb|AY642476.1| Paphiopedilum philippinense tRNA-Ser (trnS) gene ...	98	2e-17
90	gb|AY642475.1| Paphiopedilum lowii var. richardianum tRNA-Ser (t...	98	2e-17
91	gb|AY642474.1| Paphiopedilum tonsum var. braemii tRNA-Ser (trnS)...	98	2e-17
92	gb|AY642473.1| Paphiopedilum insigne var. sanderae tRNA-Ser (trn...	98	2e-17
93	gb|AY642472.1| Paphiopedilum adductum tRNA-Ser (trnS) gene and t...	98	2e-17
94	gb|AY642471.1| Paphiopedilum insigne tRNA-Ser (trnS) gene and tr...	98	2e-17
95	gb|AY642470.1| Paphiopedilum glaucophyllum tRNA-Ser (trnS) gene ...	98	2e-17
96	emb|AJ970307.1| Cucumis sativus chloroplast complete genome	98	2e-17
97	emb|AJ506156.2|ATR506156 Amborella trichopoda chloroplast genomi...	98	2e-17
98	gb|AY727486.1| Magnolia tripetala PsbZ (psbZ) gene, complete cds...	98	2e-17
99	gb|AY727485.1| Liriodendron tulipifera PsbZ (psbZ) gene, complet...	98	2e-17
100	gb|AY727484.1| Magnolia acuminata PsbZ (psbZ) gene, complete cds...	98	2e-17
101	gb|DQ119058.1| Cucumis sativus cultivar Baekmibaekdadagi plastid...	98	2e-17
102	gb|DQ317523.1| Glycine max cultivar PI 437654 chloroplast, compl...	98	2e-17
103	gb|AY642480.1| Paphiopedilum lowii tRNA-Ser (trnS) gene and trnS...	96	6e-17
104	gb|AY293379.1| Juglans australis chloroplast trnS-trnfM intergen...	96	6e-17
105	gb|AY293377.1| Juglans californica chloroplast trnS-trnfM interg...	96	6e-17
106	gb|AY293376.1| Juglans cinerea chloroplast trnS-trnfM intergenic...	96	6e-17
107	gb|AY293375.1| Juglans mollis chloroplast trnS-trnfM intergenic ...	96	6e-17
108	gb|AY293374.1| Juglans guatemalensis chloroplast trnS-trnfM inte...	96	6e-17
109	gb|AY293373.1| Juglans hindsii chloroplast trnS-trnfM intergenic...	96	6e-17
110	gb|AY293372.1| Juglans microcarpa chloroplast trnS-trnfM interge...	96	6e-17
111	gb|AY293370.1| Juglans sigillata chloroplast trnS-trnfM intergen...	96	6e-17
112	gb|AY293369.1| Juglans regia chloroplast trnS-trnfM intergenic s...	96	6e-17
113	gb|AY293365.1| Juglans ailanthifolia chloroplast trnS-trnfM inte...	96	6e-17
114	gb|DQ069354.1| Yucca schidigera photosystem II reaction center Z...	96	6e-17
115	gb|AY780259.1| Eucalyptus globulus subsp. globulus chloroplast, ...	96	6e-17
116	gb|AY337662.1| Carludovica palmata isolate Sp_20 chloroplast trn...	94	2e-16
117	gb|AY337649.1| Pandanus odoratissimus isolate Sp_7 chloroplast t...	94	2e-16
118	gb|AY582139.1| Panax ginseng chloroplast, complete genome	94	2e-16
119	dbj|AP002983.1| Lotus japonicus chloroplast DNA, complete genome	94	2e-16
120	gb|AY337660.1| Sararanga sinuosa isolate Sp_18 chloroplast trnS-...	92	1e-15
121	gb|AY337647.1| Martellidendron gallinarum isolate Sp_5 chloropla...	92	1e-15
122	gb|DQ383816.1| Lactuca sativa cultivar Salinas chloroplast, comp...	92	1e-15
123	gb|DQ383815.1| Helianthus annuus cultivar line HA383 chloroplast...	92	1e-15
124	gb|AY316647.1| Centaurea vallesiaca tRNA-Ser (trnS), and ycf9 ge...	92	1e-15
125	gb|AY316646.1| Centaurea maculosa tRNA-Ser (trnS), and ycf9 gene...	92	1e-15
126	gb|AY316645.1| Centaurea maculosa tRNA-Ser (trnS), and ycf9 gene...	92	1e-15
127	gb|AY316644.1| Centaurea diffusa tRNA-Ser (trnS), and ycf9 genes...	92	1e-15
128	gb|AY316643.1| Centaurea diffusa tRNA-Ser (trnS), and ycf9 genes...	92	1e-15
129	gb|AY316642.1| Centaurea maculosa tRNA-Ser (trnS), and ycf9 gene...	92	1e-15
130	gb|AY316641.1| Centaurea maculosa tRNA-Ser (trnS), and ycf9 gene...	92	1e-15
131	gb|AY316640.1| Centaurea diffusa tRNA-Ser (trnS), and ycf9 genes...	92	1e-15
132	gb|AY316639.1| Centaurea maculosa tRNA-Ser (trnS), and ycf9 gene...	92	1e-15
133	gb|AY316638.1| Centaurea diffusa tRNA-Ser (trnS), and ycf9 genes...	92	1e-15
134	gb|AY316637.1| Centaurea maculosa tRNA-Ser (trnS), and ycf9 gene...	92	1e-15
135	gb|AY316636.1| Centaurea maculosa tRNA-Ser (trnS), and ycf9 gene...	92	1e-15
136	gb|AY316635.1| Centaurea diffusa tRNA-Ser (trnS), and ycf9 genes...	92	1e-15
137	gb|AY316634.1| Centaurea diffusa tRNA-Ser (trnS), and ycf9 genes...	92	1e-15
138	gb|DQ384533.1| Panax ginseng clone PG6L-10 Ycf9 mRNA, complete cds	92	1e-15
139	gb|AY727503.1| Eupatorium rotundifolium PsbZ (psbZ) gene, comple...	92	1e-15
140	gb|AY727502.1| Eupatorium capillifolium PsbZ (psbZ) gene, comple...	92	1e-15
141	gb|AY727501.1| Eupatorium hyssopifolium PsbZ (psbZ) gene, comple...	92	1e-15
142	gb|AY727500.1| Carphephorus corymbosus PsbZ (psbZ) gene, complet...	92	1e-15
143	dbj|AP007232.1| Lactuca sativa chloroplast DNA, complete genome	92	1e-15
144	gb|AY293381.1| Pterocarya stenoptera chloroplast trnS-trnfM inte...	90	4e-15
145	gb|AY293380.1| Juglans olanchana chloroplast trnS-trnfM intergen...	90	4e-15
146	gb|AY293378.1| Juglans major chloroplast trnS-trnfM intergenic s...	90	4e-15
147	gb|AY293371.1| Juglans hopeiensis chloroplast trnS-trnfM interge...	90	4e-15
148	gb|AY293368.1| Juglans neotropica chloroplast trnS-trnfM interge...	90	4e-15
149	gb|AY293366.1| Juglans nigra chloroplast trnS-trnfM intergenic s...	90	4e-15
150	gb|AY293364.1| Juglans mandshurica chloroplast trnS-trnfM interg...	90	4e-15
151	gb|AY727489.1| Minuartia glabra PsbZ (psbZ) gene, complete cds; ...	90	4e-15
152	gb|AY727487.1| Minuartia cumberlandensis PsbZ (psbZ) gene, compl...	90	4e-15
153	emb|AM085629.1| Minuartia biflora chloroplast psbZ gene for phot...	90	4e-15
154	emb|AM085628.1| Minuartia biflora chloroplast psbZ gene for phot...	90	4e-15
155	emb|AM085627.1| Minuartia biflora chloroplast psbZ gene for phot...	90	4e-15
156	emb|AM085626.1| Minuartia biflora chloroplast psbZ gene for phot...	90	4e-15
157	emb|AM085625.1| Minuartia biflora chloroplast psbZ gene for phot...	90	4e-15
158	gb|AY754811.1| Carica papaya RAPD-SCAR marker sequence	88	2e-14
159	gb|AY293367.1| Juglans cathayensis chloroplast trnS-trnfM interg...	88	2e-14
160	emb|Z00044.2|CHNTXX Nicotiana tabacum chloroplast genome DNA	88	2e-14
161	gb|AC140103.7| Medicago truncatula clone mth2-9i16, complete seq...	88	2e-14
162	emb|AJ316582.1|ABE316582 Atropa belladonna complete chloroplast ...	88	2e-14
163	gb|DQ386163.1| Solanum tuberosum cultivar Desiree chloroplast, c...	88	2e-14
164	gb|AC093544.8| Medicago truncatula chloroplast, complete genome,...	88	2e-14
165	gb|AY727499.1| Trilisa paniculata PsbZ (psbZ) gene, complete cds...	88	2e-14
166	gb|AY727495.1| Solanum ptychanthum PsbZ (psbZ) gene, complete cd...	88	2e-14
167	gb|AY727494.1| Solanum americanum PsbZ (psbZ) gene, complete cds...	88	2e-14
168	gb|AY727493.1| Solanum physalifolium PsbZ (psbZ) gene, complete ...	88	2e-14
169	gb|DQ347959.1| Lycopersicon esculentum cultivar LA3023 chloropla...	88	2e-14
170	gb|DQ347958.1| Solanum bulbocastanum cultivar PT29 chloroplast, ...	88	2e-14
171	dbj|AB237912.1| Nicotiana sylvestris chloroplast DNA, complete s...	88	2e-14
172	dbj|AB240139.1| Nicotiana tomentosiformis chloroplast DNA, compl...	88	2e-14
173	gb|DQ231562.1| Solanum tuberosum chloroplast, complete genome	88	2e-14
174	emb|AJ312393.1|CTR312393 Chloroplast transformation vector pRB95	88	2e-14
175	emb|AJ312392.1|CTR312392 Chloroplast transformation vector pRB94	88	2e-14
176	emb|AJ312391.1|CTR312391 Chloroplast transformation vector pRB70	88	2e-14
177	gb|AC145457.1| Cicer arietinum strain FLIP84-92C clone gl1-40c9,...	86	6e-14
178	gb|AY337659.1| Sararanga philippinensis isolate Sp_17 chloroplas...	84	2e-13
179	emb|AJ428413.1|CFE428413 Calycanthus fertilis var. ferax complet...	84	2e-13
180	emb|AJ400848.1|SOL400848 Spinacia oleracea complete chloroplast ...	82	9e-13
181	dbj|AB206610.1| Arcterica nana chloroplast DNA, trnS-trnfM inter...	82	9e-13
182	dbj|AB206609.1| Pieris floribunda chloroplast DNA, trnS-trnfM in...	82	9e-13
183	dbj|AB206608.1| Pieris phillyreifolia chloroplast DNA, trnS-trnf...	82	9e-13
184	dbj|AB206607.1| Pieris formosa chloroplast DNA, trnS-trnfM inter...	82	9e-13
185	dbj|AB206606.1| Pieris formosa var. forrestii chloroplast DNA, t...	82	9e-13
186	dbj|AB206605.1| Pieris taiwanensis chloroplast DNA, trnS-trnfM i...	82	9e-13
187	dbj|AB206604.1| Pieris koidzumiana chloroplast DNA, trnS-trnfM i...	82	9e-13
188	dbj|AB206603.1| Pieris koidzumiana chloroplast DNA, trnS-trnfM i...	82	9e-13
189	dbj|AB206602.1| Pieris japonica var. yakushimensis chloroplast D...	82	9e-13
190	dbj|AB206601.1| Pieris japonica chloroplast DNA, trnS-trnfM inte...	82	9e-13
191	gb|AY727498.1| Gratiola brevifolia PsbZ (psbZ) gene, complete cd...	82	9e-13
192	gb|AY727497.1| Gratiola neglecta PsbZ (psbZ) gene, complete cds;...	82	9e-13
193	gb|AY727496.1| Gratiola virginiana PsbZ (psbZ) gene, complete cd...	82	9e-13
194	gb|DQ069352.1| Ranunculus macranthus photosystem II reaction cen...	80	4e-12
195	gb|DQ069351.1| Nuphar advena photosystem II reaction center Z pr...	80	4e-12
196	gb|AF301464.1|AF301464 Platanthera praeclara tRNA-Ser gene, part...	80	4e-12
197	gb|DQ231548.1| Brassica rapa subsp. pekinensis chloroplast sequence	80	4e-12
198	dbj|AP000423.1| Arabidopsis thaliana chloroplast genomic DNA, co...	80	4e-12
199	gb|AY363054.1| Spiranthes romanzoffiana trnS gene and trnS-trnfM...	78	1e-11
200	gb|AF301469.1|AF301469 Spiranthes vernalis tRNA-Ser gene, partia...	78	1e-11
201	gb|AF301468.1|AF301468 Spiranthes romanzoffiana tRNA-Ser gene, p...	78	1e-11
202	gb|AF301467.1|AF301467 Spiranthes magnicamporum tRNA-Ser gene, p...	78	1e-11
203	gb|AF301466.1|AF301466 Spiranthes diluvialis tRNA-Ser gene, part...	78	1e-11
204	gb|AF301465.1|AF301465 Spiranthes cernua tRNA-Ser gene, partial ...	78	1e-11
205	emb|AM087200.2| Lycopersicon esculentum complete chloroplast genome	74	2e-10
206	emb|AJ879453.1| Acorus calamus chloroplast, complete genome	72	9e-10
207	emb|AJ427520.1|ENA427520 Eritrichium nanum chloroplast tRNA-Ser(...	72	9e-10
208	emb|AJ427519.1|ENA427519 Eritrichium nanum chloroplast tRNA-Ser(...	72	9e-10
209	emb|AJ427518.1|ENA427518 Eritrichium nanum chloroplast tRNA-Ser(...	72	9e-10
210	emb|AJ427517.1|ENA427517 Eritrichium nanum chloroplast tRNA-Ser(...	72	9e-10
211	emb|AJ427516.1|ENA427516 Eritrichium nanum chloroplast tRNA-Ser(...	72	9e-10
212	emb|AJ427515.1|ENA427515 Eritrichium nanum chloroplast tRNA-Ser(...	72	9e-10
213	emb|AJ427514.1|ENA427514 Eritrichium nanum chloroplast tRNA-Ser(...	72	9e-10
214	dbj|AP003143.2| Oryza sativa (japonica cultivar-group) genomic D...	68	1e-08
215	gb|AY757813.1| Acorus gramineus LhbA (lhbA) mRNA, complete cds; ...	64	2e-07
216	gb|DQ069349.1| Acorus americanus photosystem II reaction center ...	64	2e-07
217	gb|AY727488.1| Minuartia uniflora PsbZ (psbZ) gene, complete cds...	60	3e-06
218	gb|M27309.1|PEACPD2 Pisum sativum D2 photosystem II protein and ...	58	1e-05
219	gb|DQ069350.1| Ginkgo biloba photosystem II reaction center Z pr...	50	0.003
220	gb|AY337658.1| Freycinetia funicularis isolate Sp_16 chloroplast...	50	0.003
221	gb|AY337657.1| Freycinetia angustissima isolate Sp_15 chloroplas...	50	0.003
222	gb|AY337655.1| Freycinetia cumingiana isolate Sp_13 chloroplast ...	50	0.003
223	gb|AY228468.1| Pinus Koraiensis chloroplast, complete genome	50	0.003
224	dbj|AB116593.1| Cycas panzhihuaensis chloroplast DNA, intergenic...	50	0.003
225	dbj|AB116592.1| Cycas taitungensis chloroplast DNA, intergenic s...	50	0.003
226	dbj|AB101678.2| Cycas revoluta chloroplast gene for tRNA-Ser, in...	50	0.003
227	dbj|AB100596.2| Cycas revoluta chloroplast gene for tRNA-Ser, in...	50	0.003
228	dbj|AP005672.1| Physcomitrella patens subsp. patens chloroplast ...	50	0.003
229	dbj|D17510.1|PINCPTRPG Pinus thunbergii chloroplast DNA, complet...	50	0.003
230	dbj|AB087438.1| Anthoceros formosae chloroplast psbZ mRNA for ph...	48	0.013
231	dbj|AB086179.1| Anthoceros formosae chloroplast DNA, complete ge...	48	0.013
232	gb|AY178864.1| Adiantum capillus-veneris chloroplast, complete g...	44	0.20
233	gb|AC161808.8| Mus musculus chromosome 5, clone RP24-386J15, com...	44	0.20
234	gb|AY337656.1| Freycinetia javanica isolate Sp_14 chloroplast tr...	44	0.20
235	emb|X04465.1|CHMPXX Marchantia polymorpha chloroplast genome DNA	44	0.20
236	emb|X01647.1|CHMPTRN Marchantia polymorpha chloroplast DNA for t...	44	0.20
237	gb|AC008218.5| Drosophila melanogaster, chromosome 3R, region 99...	44	0.20
238	gb|AC007856.7|AC007856 Drosophila melanogaster, chromosome 3R, r...	44	0.20
239	emb|CT573019.12| Mouse DNA sequence from clone RP24-94G12 on chr...	44	0.20
240	gb|AE003770.2| Drosophila melanogaster chromosome 3R, section 10...	44	0.20
241	gb|AC148876.2| Pan troglodytes BAC clone CH251-50I16 from Y, com...	42	0.81
242	gb|AC146453.3| Pan troglodytes BAC clone CH251-510F17 from Y, co...	42	0.81
243	gb|AC147675.2| Pan troglodytes BAC clone CH251-6P20 from Y, comp...	42	0.81
244	gb|AE014822.1| Plasmodium falciparum 3D7 chromosome 14 section 7...	42	0.81
245	emb|Z97335.2|ATFCA0 Arabidopsis thaliana DNA chromosome 4, ESSA ...	42	0.81
246	emb|AL161537.2|ATCHRIV37 Arabidopsis thaliana DNA chromosome 4, ...	42	0.81
247	dbj|BS000655.1| Pan troglodytes chromosome Y clone:PTB-215M20, c...	42	0.81
248	dbj|BS000615.1| Pan troglodytes chromosome Y clone:PTBY-009P07, ...	42	0.81
249	dbj|BS000609.1| Pan troglodytes chromosome Y clone:PTB-217K15, c...	42	0.81
250	gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence	42	0.81
251	gb|AC010135.3|AC010135 Homo sapiens BAC clone RP11-128D13 from Y...	42	0.81
252	gb|AY727492.1| Glyptostrobus pensilis PsbZ (psbZ) gene, complete...	42	0.81
253	emb|CR762486.12| Zebrafish DNA sequence from clone DKEY-264O9 in...	42	0.81
254	gb|AF017780.1|AF017780 Sour cherry green ring mottle virus, comp...	42	0.81
255	emb|X99254.1|PFPRIMSSU P.falciparum gene encoding primase, small...	42	0.81
256	gb|AC108914.8| Mus musculus chromosome 1, clone RP23-435E15, com...	40	3.2
257	gb|AY425527.1| Isabellaria clandestina subsuturalis tRNA-Met and...	40	3.2
258	gb|AC150577.4| Bos taurus BAC CH240-268P24 (Children's Hospital...	40	3.2
259	gb|AC150209.1| Pan troglodytes chromosome X clone PTB-085O24 map...	40	3.2
260	emb|Z81490.1|CECC4 Caenorhabditis elegans Cosmid CC4, complete s...	40	3.2
261	emb|AL023835.1|CEY37A1B Caenorhabditis elegans YAC Y37A1B, compl...	40	3.2
262	gb|AC135415.27| Medicago truncatula clone mth2-10b9, complete se...	40	3.2
263	emb|AJ303082.1|CEL303082 Caenorhabditis elegans mRNA for PMR1 pr...	40	3.2
264	emb|AJ303081.1|CEL303081 Caenorhabditis elegans mRNA for PMR1 pr...	40	3.2
265	emb|BX510989.13| Zebrafish DNA sequence from clone CH211-76L23 i...	40	3.2
266	ref|NM_001026690.1| Caenorhabditis elegans PMR-type Golgi ATPase...	40	3.2
267	ref|NM_001026691.1| Caenorhabditis elegans PMR-type Golgi ATPase...	40	3.2
268	ref|NM_001026689.1| Caenorhabditis elegans PMR-type Golgi ATPase...	40	3.2
269	gb|AC121343.6| Homo sapiens X BAC RP11-438J7 (Roswell Park Cance...	40	3.2
270	gb|AC159142.2| Medicago truncatula chromosome 2 BAC clone mth2-1...	40	3.2
271	emb|AJ315316.1|STA315316 Swertia tashiroi chloroplast trnS-Ycf9 ...	40	3.2
272	emb|AJ315292.1|LBR315292 Lomatogonium brachyantherum chloroplast...	40	3.2

---

>gb|U37703.1|HVU37703 Hordeum vulgare ORF 62 mRNA, chloroplast gene, encoding chloroplast
           protein, complete cds
          Length = 697

 Score =  400 bits (202), Expect = e-109
 Identities = 233/245 (95%), Gaps = 1/245 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
           |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 428 caaatacaaggggtacacta-attactaagactgaggaagtcgcaattaatgcaaaaaca 370

                                                                       
Query: 61  gctaattggaaagcactagtcatatttctaatcctccaagctaccatcaaataaagatga 120
           ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 369 gctaattggaaagcaatagtcatatttctaatcctccaagctaccatcaaataaagttga 310

                                                                       
Query: 121 ctacatatttgatccctcacttaaccaaaattgtnnnnnnntacaagaagtangaggggt 180
           ||||||||||||||||||||||||||||||||||       ||||||||||| |||||||
Sbjct: 309 ctacatatttgatccctcacttaaccaaaattgtaaaaaaatacaagaagtaggaggggt 250

                                                                       
Query: 181 ttaatcatgaatccattgattcttctctttaattaaaatttattacttaacctctttttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 ttaatcatgaatccattgattcttctctttaattaaaatttattacttaacctctttttt 190

                
Query: 241 atttg 245
           |||||
Sbjct: 189 atttg 185

---

>emb|X02560.1|CHTATRN1 Wheat chloroplast genes for tRNA-Gly (GCC), tRNA-Met (CAU) and
           tRNA-Gly (UCC)
          Length = 2358

 Score =  371 bits (187), Expect = e-100
 Identities = 231/246 (93%), Gaps = 2/246 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
           |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 304 caaatacaaggggtacacta-attactaagactgaggaagtcgcaattaatgcaaaaaca 246

                                                                       
Query: 61  gctaattggaaagcactagtcatatttctaatcctccaagctaccatcaaataaagatga 120
           ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 245 gctaattggaaagcaatagtcatatttctaatcctccaagctaccatcaaataaagttga 186

                                                                       
Query: 121 ctacatatttgatccctcacttaaccaaaattgtnnnnnnntacaagaagtangaggggt 180
           ||||||||||||||||||||||||||||||||||       ||||||||||| |||||||
Sbjct: 185 ctacatatttgatccctcacttaaccaaaattgtaaaaaaatacaagaagtaggaggggt 126

                                                                       
Query: 181 ttaatcatgaatccattgattcttctctttaattaaaatttattactt-aacctcttttt 239
           |||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||
Sbjct: 125 ttaatcatgaatccattgattcttctctttaattcaaatttattacttaaaccgcttttt 66

                 
Query: 240 tatttg 245
           ||||||
Sbjct: 65  tatttg 60

---

>dbj|AB027572.1| Triticum aestivum chloroplast DNA, 21.1-kb fragment bearing RNA
           polymerase subunit (rpo) genes
          Length = 21245

 Score =  371 bits (187), Expect = e-100
 Identities = 231/246 (93%), Gaps = 2/246 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
           |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 745 caaatacaaggggtacacta-attactaagactgaggaagtcgcaattaatgcaaaaaca 687

                                                                       
Query: 61  gctaattggaaagcactagtcatatttctaatcctccaagctaccatcaaataaagatga 120
           ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 686 gctaattggaaagcaatagtcatatttctaatcctccaagctaccatcaaataaagttga 627

                                                                       
Query: 121 ctacatatttgatccctcacttaaccaaaattgtnnnnnnntacaagaagtangaggggt 180
           ||||||||||||||||||||||||||||||||||       ||||||||||| |||||||
Sbjct: 626 ctacatatttgatccctcacttaaccaaaattgtaaaaaaatacaagaagtaggaggggt 567

                                                                       
Query: 181 ttaatcatgaatccattgattcttctctttaattaaaatttattactt-aacctcttttt 239
           |||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||
Sbjct: 566 ttaatcatgaatccattgattcttctctttaattcaaatttattacttaaaccgcttttt 507

                 
Query: 240 tatttg 245
           ||||||
Sbjct: 506 tatttg 501

---

>dbj|AB042240.3| Triticum aestivum chloroplast DNA, complete genome
          Length = 134545

 Score =  371 bits (187), Expect = e-100
 Identities = 231/246 (93%), Gaps = 2/246 (0%)
 Strand = Plus / Minus

                                                                         
Query: 1     caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
             |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 12099 caaatacaaggggtacacta-attactaagactgaggaagtcgcaattaatgcaaaaaca 12041

                                                                         
Query: 61    gctaattggaaagcactagtcatatttctaatcctccaagctaccatcaaataaagatga 120
             ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 12040 gctaattggaaagcaatagtcatatttctaatcctccaagctaccatcaaataaagttga 11981

                                                                         
Query: 121   ctacatatttgatccctcacttaaccaaaattgtnnnnnnntacaagaagtangaggggt 180
             ||||||||||||||||||||||||||||||||||       ||||||||||| |||||||
Sbjct: 11980 ctacatatttgatccctcacttaaccaaaattgtaaaaaaatacaagaagtaggaggggt 11921

                                                                         
Query: 181   ttaatcatgaatccattgattcttctctttaattaaaatttattactt-aacctcttttt 239
             |||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||
Sbjct: 11920 ttaatcatgaatccattgattcttctctttaattcaaatttattacttaaaccgcttttt 11861

                   
Query: 240   tatttg 245
             ||||||
Sbjct: 11860 tatttg 11855

---

>gb|AY522330.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare chloroplast,
             complete genome
          Length = 134551

 Score =  274 bits (138), Expect = 1e-70
 Identities = 196/217 (90%), Gaps = 6/217 (2%)
 Strand = Plus / Minus

                                                                         
Query: 1     caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
             |||||||| ||||||||||| || |||||||||||||||||| |||||||||||||||||
Sbjct: 12020 caaatacaaggggtacacta-atgactaagactgaggaagtcacaattaatgcaaaaaca 11962

                                                                         
Query: 61    gctaattggaaagcactagtcatatttctaatcctccaagctaccatcaaataaagatga 120
             ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 11961 gctaattggaaagcaatagtcatatttctaatcctccaagttaccatcaaataaagttga 11902

                                                                         
Query: 121   ctac-----atatttgatccctcacttaaccaaaattgtnnnnnnntacaagaagtanga 175
             ||||     |||||||||||||||||||| |||||||||       ||||||||||| ||
Sbjct: 11901 ctacatattatatttgatccctcacttaatcaaaattgtaataaaatacaagaagtagga 11842

                                                  
Query: 176   ggggtttaatcatgaatccattgattcttctctttaa 212
             |||||||||||||||||||||||||||||||||||||
Sbjct: 11841 ggggtttaatcatgaatccattgattcttctctttaa 11805

---

>gb|AY522331.1| Oryza sativa (japonica cultivar-group) isolate PA64S chloroplast,
             complete genome
          Length = 134551

 Score =  274 bits (138), Expect = 1e-70
 Identities = 196/217 (90%), Gaps = 6/217 (2%)
 Strand = Plus / Minus

                                                                         
Query: 1     caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
             |||||||| ||||||||||| || |||||||||||||||||| |||||||||||||||||
Sbjct: 12020 caaatacaaggggtacacta-atgactaagactgaggaagtcacaattaatgcaaaaaca 11962

                                                                         
Query: 61    gctaattggaaagcactagtcatatttctaatcctccaagctaccatcaaataaagatga 120
             ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 11961 gctaattggaaagcaatagtcatatttctaatcctccaagttaccatcaaataaagttga 11902

                                                                         
Query: 121   ctac-----atatttgatccctcacttaaccaaaattgtnnnnnnntacaagaagtanga 175
             ||||     |||||||||||||||||||| |||||||||       ||||||||||| ||
Sbjct: 11901 ctacatattatatttgatccctcacttaatcaaaattgtaataaaatacaagaagtagga 11842

                                                  
Query: 176   ggggtttaatcatgaatccattgattcttctctttaa 212
             |||||||||||||||||||||||||||||||||||||
Sbjct: 11841 ggggtttaatcatgaatccattgattcttctctttaa 11805

---

>gb|AY522329.1| Oryza sativa (indica cultivar-group) isolate 93-11 chloroplast,
             complete genome
          Length = 134496

 Score =  274 bits (138), Expect = 1e-70
 Identities = 196/217 (90%), Gaps = 6/217 (2%)
 Strand = Plus / Minus

                                                                         
Query: 1     caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
             |||||||| ||||||||||| || |||||||||||||||||| |||||||||||||||||
Sbjct: 11957 caaatacaaggggtacacta-atgactaagactgaggaagtcacaattaatgcaaaaaca 11899

                                                                         
Query: 61    gctaattggaaagcactagtcatatttctaatcctccaagctaccatcaaataaagatga 120
             ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 11898 gctaattggaaagcaatagtcatatttctaatcctccaagttaccatcaaataaagttga 11839

                                                                         
Query: 121   ctac-----atatttgatccctcacttaaccaaaattgtnnnnnnntacaagaagtanga 175
             ||||     |||||||||||||||||||| |||||||||       ||||||||||| ||
Sbjct: 11838 ctacatattatatttgatccctcacttaatcaaaattgtaataaaatacaagaagtagga 11779

                                                  
Query: 176   ggggtttaatcatgaatccattgattcttctctttaa 212
             |||||||||||||||||||||||||||||||||||||
Sbjct: 11778 ggggtttaatcatgaatccattgattcttctctttaa 11742

---

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  274 bits (138), Expect = 1e-70
 Identities = 196/217 (90%), Gaps = 6/217 (2%)
 Strand = Plus / Minus

                                                                            
Query: 1        caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
                |||||||| ||||||||||| || |||||||||||||||||| |||||||||||||||||
Sbjct: 34185796 caaatacaaggggtacacta-atgactaagactgaggaagtcacaattaatgcaaaaaca 34185738

                                                                            
Query: 61       gctaattggaaagcactagtcatatttctaatcctccaagctaccatcaaataaagatga 120
                ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 34185737 gctaattggaaagcaatagtcatatttctaatcctccaagttaccatcaaataaagttga 34185678

                                                                            
Query: 121      ctac-----atatttgatccctcacttaaccaaaattgtnnnnnnntacaagaagtanga 175
                ||||     |||||||||||||||||||| |||||||||       ||||||||||| ||
Sbjct: 34185677 ctacatattatatttgatccctcacttaatcaaaattgtaataaaatacaagaagtaaga 34185618

                                                     
Query: 176      ggggtttaatcatgaatccattgattcttctctttaa 212
                |||||||||||||||||||||||||||||||||||||
Sbjct: 34185617 ggggtttaatcatgaatccattgattcttctctttaa 34185581

---

>emb|X15901.1|CHOSXX Oryza sativa (japonica cultivar-group) chloroplast genome
          Length = 134525

 Score =  274 bits (138), Expect = 1e-70
 Identities = 196/217 (90%), Gaps = 6/217 (2%)
 Strand = Plus / Minus

                                                                         
Query: 1     caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
             |||||||| ||||||||||| || |||||||||||||||||| |||||||||||||||||
Sbjct: 12018 caaatacaaggggtacacta-atgactaagactgaggaagtcacaattaatgcaaaaaca 11960

                                                                         
Query: 61    gctaattggaaagcactagtcatatttctaatcctccaagctaccatcaaataaagatga 120
             ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 11959 gctaattggaaagcaatagtcatatttctaatcctccaagttaccatcaaataaagttga 11900

                                                                         
Query: 121   ctac-----atatttgatccctcacttaaccaaaattgtnnnnnnntacaagaagtanga 175
             ||||     |||||||||||||||||||| |||||||||       ||||||||||| ||
Sbjct: 11899 ctacatattatatttgatccctcacttaatcaaaattgtaataaaatacaagaagtagga 11840

                                                  
Query: 176   ggggtttaatcatgaatccattgattcttctctttaa 212
             |||||||||||||||||||||||||||||||||||||
Sbjct: 11839 ggggtttaatcatgaatccattgattcttctctttaa 11803

---

>emb|BX569685.1|OSJN00291 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0061C08,
             complete sequence
          Length = 145980

 Score =  274 bits (138), Expect = 1e-70
 Identities = 196/217 (90%), Gaps = 6/217 (2%)
 Strand = Plus / Minus

                                                                         
Query: 1     caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
             |||||||| ||||||||||| || |||||||||||||||||| |||||||||||||||||
Sbjct: 95372 caaatacaaggggtacacta-atgactaagactgaggaagtcacaattaatgcaaaaaca 95314

                                                                         
Query: 61    gctaattggaaagcactagtcatatttctaatcctccaagctaccatcaaataaagatga 120
             ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 95313 gctaattggaaagcaatagtcatatttctaatcctccaagttaccatcaaataaagttga 95254

                                                                         
Query: 121   ctac-----atatttgatccctcacttaaccaaaattgtnnnnnnntacaagaagtanga 175
             ||||     |||||||||||||||||||| |||||||||       ||||||||||| ||
Sbjct: 95253 ctacatattatatttgatccctcacttaatcaaaattgtaataaaatacaagaagtagga 95194

                                                  
Query: 176   ggggtttaatcatgaatccattgattcttctctttaa 212
             |||||||||||||||||||||||||||||||||||||
Sbjct: 95193 ggggtttaatcatgaatccattgattcttctctttaa 95157

---

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score =  274 bits (138), Expect = 1e-70
 Identities = 196/217 (90%), Gaps = 6/217 (2%)
 Strand = Plus / Minus

                                                                           
Query: 1       caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
               |||||||| ||||||||||| || |||||||||||||||||| |||||||||||||||||
Sbjct: 9241251 caaatacaaggggtacacta-atgactaagactgaggaagtcacaattaatgcaaaaaca 9241193

                                                                           
Query: 61      gctaattggaaagcactagtcatatttctaatcctccaagctaccatcaaataaagatga 120
               ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 9241192 gctaattggaaagcaatagtcatatttctaatcctccaagttaccatcaaataaagttga 9241133

                                                                           
Query: 121     ctac-----atatttgatccctcacttaaccaaaattgtnnnnnnntacaagaagtanga 175
               ||||     |||||||||||||||||||| |||||||||       ||||||||||| ||
Sbjct: 9241132 ctacatattatatttgatccctcacttaatcaaaattgtaataaaatacaagaagtagga 9241073

                                                    
Query: 176     ggggtttaatcatgaatccattgattcttctctttaa 212
               |||||||||||||||||||||||||||||||||||||
Sbjct: 9241072 ggggtttaatcatgaatccattgattcttctctttaa 9241036



 Score =  274 bits (138), Expect = 1e-70
 Identities = 196/217 (90%), Gaps = 6/217 (2%)
 Strand = Plus / Minus

                                                                           
Query: 1       caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
               |||||||| ||||||||||| || |||||||||||||||||| |||||||||||||||||
Sbjct: 9137346 caaatacaaggggtacacta-atgactaagactgaggaagtcacaattaatgcaaaaaca 9137288

                                                                           
Query: 61      gctaattggaaagcactagtcatatttctaatcctccaagctaccatcaaataaagatga 120
               ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 9137287 gctaattggaaagcaatagtcatatttctaatcctccaagttaccatcaaataaagttga 9137228

                                                                           
Query: 121     ctac-----atatttgatccctcacttaaccaaaattgtnnnnnnntacaagaagtanga 175
               ||||     |||||||||||||||||||| |||||||||       ||||||||||| ||
Sbjct: 9137227 ctacatattatatttgatccctcacttaatcaaaattgtaataaaatacaagaagtagga 9137168

                                                    
Query: 176     ggggtttaatcatgaatccattgattcttctctttaa 212
               |||||||||||||||||||||||||||||||||||||
Sbjct: 9137167 ggggtttaatcatgaatccattgattcttctctttaa 9137131

---

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  274 bits (138), Expect = 1e-70
 Identities = 196/217 (90%), Gaps = 6/217 (2%)
 Strand = Plus / Minus

                                                                            
Query: 1        caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
                |||||||| ||||||||||| || |||||||||||||||||| |||||||||||||||||
Sbjct: 34276268 caaatacaaggggtacacta-atgactaagactgaggaagtcacaattaatgcaaaaaca 34276210

                                                                            
Query: 61       gctaattggaaagcactagtcatatttctaatcctccaagctaccatcaaataaagatga 120
                ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 34276209 gctaattggaaagcaatagtcatatttctaatcctccaagttaccatcaaataaagttga 34276150

                                                                            
Query: 121      ctac-----atatttgatccctcacttaaccaaaattgtnnnnnnntacaagaagtanga 175
                ||||     |||||||||||||||||||| |||||||||       ||||||||||| ||
Sbjct: 34276149 ctacatattatatttgatccctcacttaatcaaaattgtaataaaatacaagaagtaaga 34276090

                                                     
Query: 176      ggggtttaatcatgaatccattgattcttctctttaa 212
                |||||||||||||||||||||||||||||||||||||
Sbjct: 34276089 ggggtttaatcatgaatccattgattcttctctttaa 34276053

---

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  274 bits (138), Expect = 1e-70
 Identities = 196/217 (90%), Gaps = 6/217 (2%)
 Strand = Plus / Plus

                                                                            
Query: 1        caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
                |||||||| ||||||||||| || |||||||||||||||||| |||||||||||||||||
Sbjct: 14384299 caaatacaaggggtacacta-atgactaagactgaggaagtcacaattaatgcaaaaaca 14384357

                                                                            
Query: 61       gctaattggaaagcactagtcatatttctaatcctccaagctaccatcaaataaagatga 120
                ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 14384358 gctaattggaaagcaatagtcatatttctaatcctccaagttaccatcaaataaagttga 14384417

                                                                            
Query: 121      ctac-----atatttgatccctcacttaaccaaaattgtnnnnnnntacaagaagtanga 175
                ||||     |||||||||||||||||||| |||||||||       ||||||||||| ||
Sbjct: 14384418 ctacatattatatttgatccctcacttaatcaaaattgtaataaaatacaagaagtagga 14384477

                                                     
Query: 176      ggggtttaatcatgaatccattgattcttctctttaa 212
                |||||||||||||||||||||||||||||||||||||
Sbjct: 14384478 ggggtttaatcatgaatccattgattcttctctttaa 14384514

---

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  274 bits (138), Expect = 1e-70
 Identities = 196/217 (90%), Gaps = 6/217 (2%)
 Strand = Plus / Minus

                                                                            
Query: 1        caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
                |||||||| ||||||||||| || |||||||||||||||||| |||||||||||||||||
Sbjct: 33564035 caaatacaaggggtacacta-atgactaagactgaggaagtcacaattaatgcaaaaaca 33563977

                                                                            
Query: 61       gctaattggaaagcactagtcatatttctaatcctccaagctaccatcaaataaagatga 120
                ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 33563976 gctaattggaaagcaatagtcatatttctaatcctccaagttaccatcaaataaagttga 33563917

                                                                            
Query: 121      ctac-----atatttgatccctcacttaaccaaaattgtnnnnnnntacaagaagtanga 175
                ||||     |||||||||||||||||||| |||||||||       ||||||||||| ||
Sbjct: 33563916 ctacatattatatttgatccctcacttaatcaaaattgtaataaaatacaagaagtagga 33563857

                                                     
Query: 176      ggggtttaatcatgaatccattgattcttctctttaa 212
                |||||||||||||||||||||||||||||||||||||
Sbjct: 33563856 ggggtttaatcatgaatccattgattcttctctttaa 33563820



 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 36/37 (97%)
 Strand = Plus / Minus

                                                     
Query: 162      tacaagaagtangaggggtttaatcatgaatccattg 198
                ||||||||||| |||||||||||||||||||||||||
Sbjct: 12843058 tacaagaagtaggaggggtttaatcatgaatccattg 12843022

---

>gb|AC104433.8| Oryza sativa chromosome 3 BAC OJ1754_E06 genomic sequence, complete
              sequence
          Length = 163828

 Score =  274 bits (138), Expect = 1e-70
 Identities = 196/217 (90%), Gaps = 6/217 (2%)
 Strand = Plus / Minus

                                                                          
Query: 1      caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
              |||||||| ||||||||||| || |||||||||||||||||| |||||||||||||||||
Sbjct: 149608 caaatacaaggggtacacta-atgactaagactgaggaagtcacaattaatgcaaaaaca 149550

                                                                          
Query: 61     gctaattggaaagcactagtcatatttctaatcctccaagctaccatcaaataaagatga 120
              ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 149549 gctaattggaaagcaatagtcatatttctaatcctccaagttaccatcaaataaagttga 149490

                                                                          
Query: 121    ctac-----atatttgatccctcacttaaccaaaattgtnnnnnnntacaagaagtanga 175
              ||||     |||||||||||||||||||| |||||||||       ||||||||||| ||
Sbjct: 149489 ctacatattatatttgatccctcacttaatcaaaattgtaataaaatacaagaagtaaga 149430

                                                   
Query: 176    ggggtttaatcatgaatccattgattcttctctttaa 212
              |||||||||||||||||||||||||||||||||||||
Sbjct: 149429 ggggtttaatcatgaatccattgattcttctctttaa 149393

---

>dbj|AP003280.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0557A01
          Length = 147201

 Score =  274 bits (138), Expect = 1e-70
 Identities = 196/217 (90%), Gaps = 6/217 (2%)
 Strand = Plus / Minus

                                                                          
Query: 1      caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
              |||||||| ||||||||||| || |||||||||||||||||| |||||||||||||||||
Sbjct: 109232 caaatacaaggggtacacta-atgactaagactgaggaagtcacaattaatgcaaaaaca 109174

                                                                          
Query: 61     gctaattggaaagcactagtcatatttctaatcctccaagctaccatcaaataaagatga 120
              ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 109173 gctaattggaaagcaatagtcatatttctaatcctccaagttaccatcaaataaagttga 109114

                                                                          
Query: 121    ctac-----atatttgatccctcacttaaccaaaattgtnnnnnnntacaagaagtanga 175
              ||||     |||||||||||||||||||| |||||||||       ||||||||||| ||
Sbjct: 109113 ctacatattatatttgatccctcacttaatcaaaattgtaataaaatacaagaagtagga 109054

                                                   
Query: 176    ggggtttaatcatgaatccattgattcttctctttaa 212
              |||||||||||||||||||||||||||||||||||||
Sbjct: 109053 ggggtttaatcatgaatccattgattcttctctttaa 109017

---

>dbj|AP005408.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0022A24
          Length = 148347

 Score =  274 bits (138), Expect = 1e-70
 Identities = 196/217 (90%), Gaps = 6/217 (2%)
 Strand = Plus / Plus

                                                                          
Query: 1      caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
              |||||||| ||||||||||| || |||||||||||||||||| |||||||||||||||||
Sbjct: 106221 caaatacaaggggtacacta-atgactaagactgaggaagtcacaattaatgcaaaaaca 106279

                                                                          
Query: 61     gctaattggaaagcactagtcatatttctaatcctccaagctaccatcaaataaagatga 120
              ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 106280 gctaattggaaagcaatagtcatatttctaatcctccaagttaccatcaaataaagttga 106339

                                                                          
Query: 121    ctac-----atatttgatccctcacttaaccaaaattgtnnnnnnntacaagaagtanga 175
              ||||     |||||||||||||||||||| |||||||||       ||||||||||| ||
Sbjct: 106340 ctacatattatatttgatccctcacttaatcaaaattgtaataaaatacaagaagtagga 106399

                                                   
Query: 176    ggggtttaatcatgaatccattgattcttctctttaa 212
              |||||||||||||||||||||||||||||||||||||
Sbjct: 106400 ggggtttaatcatgaatccattgattcttctctttaa 106436

---

>dbj|AP006728.1| Oryza nivara chloroplast DNA, complete genome
          Length = 134494

 Score =  274 bits (138), Expect = 1e-70
 Identities = 196/217 (90%), Gaps = 6/217 (2%)
 Strand = Plus / Minus

                                                                         
Query: 1     caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
             |||||||| ||||||||||| || |||||||||||||||||| |||||||||||||||||
Sbjct: 11955 caaatacaaggggtacacta-atgactaagactgaggaagtcacaattaatgcaaaaaca 11897

                                                                         
Query: 61    gctaattggaaagcactagtcatatttctaatcctccaagctaccatcaaataaagatga 120
             ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 11896 gctaattggaaagcaatagtcatatttctaatcctccaagttaccatcaaataaagttga 11837

                                                                         
Query: 121   ctac-----atatttgatccctcacttaaccaaaattgtnnnnnnntacaagaagtanga 175
             ||||     |||||||||||||||||||| |||||||||       ||||||||||| ||
Sbjct: 11836 ctacatattatatttgatccctcacttaatcaaaattgtaataaaatacaagaagtagga 11777

                                                  
Query: 176   ggggtttaatcatgaatccattgattcttctctttaa 212
             |||||||||||||||||||||||||||||||||||||
Sbjct: 11776 ggggtttaatcatgaatccattgattcttctctttaa 11740

---

>gb|AC136521.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone
              OSJNBa0034M22, complete sequence
          Length = 149435

 Score =  266 bits (134), Expect = 3e-68
 Identities = 195/217 (89%), Gaps = 6/217 (2%)
 Strand = Plus / Minus

                                                                          
Query: 1      caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
              |||||||| ||||||||||| || ||| |||||||||||||| |||||||||||||||||
Sbjct: 143049 caaatacaaggggtacacta-atgacttagactgaggaagtcacaattaatgcaaaaaca 142991

                                                                          
Query: 61     gctaattggaaagcactagtcatatttctaatcctccaagctaccatcaaataaagatga 120
              ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 142990 gctaattggaaagcaatagtcatatttctaatcctccaagttaccatcaaataaagttga 142931

                                                                          
Query: 121    ctac-----atatttgatccctcacttaaccaaaattgtnnnnnnntacaagaagtanga 175
              ||||     |||||||||||||||||||| |||||||||       ||||||||||| ||
Sbjct: 142930 ctacatattatatttgatccctcacttaatcaaaattgtaataaaatacaagaagtagga 142871

                                                   
Query: 176    ggggtttaatcatgaatccattgattcttctctttaa 212
              |||||||||||||||||||||||||||||||||||||
Sbjct: 142870 ggggtttaatcatgaatccattgattcttctctttaa 142834

---

>gb|AC130726.2| Oryza sativa (japonica cultivar-group) chromosome 5 PAC clone
            P0508G08, complete sequence
          Length = 141383

 Score =  266 bits (134), Expect = 3e-68
 Identities = 195/217 (89%), Gaps = 6/217 (2%)
 Strand = Plus / Minus

                                                                        
Query: 1    caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
            |||||||| ||||||||||| || ||| |||||||||||||| |||||||||||||||||
Sbjct: 6136 caaatacaaggggtacacta-atgacttagactgaggaagtcacaattaatgcaaaaaca 6078

                                                                        
Query: 61   gctaattggaaagcactagtcatatttctaatcctccaagctaccatcaaataaagatga 120
            ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 6077 gctaattggaaagcaatagtcatatttctaatcctccaagttaccatcaaataaagttga 6018

                                                                        
Query: 121  ctac-----atatttgatccctcacttaaccaaaattgtnnnnnnntacaagaagtanga 175
            ||||     |||||||||||||||||||| |||||||||       ||||||||||| ||
Sbjct: 6017 ctacatattatatttgatccctcacttaatcaaaattgtaataaaatacaagaagtagga 5958

                                                 
Query: 176  ggggtttaatcatgaatccattgattcttctctttaa 212
            |||||||||||||||||||||||||||||||||||||
Sbjct: 5957 ggggtttaatcatgaatccattgattcttctctttaa 5921

---

>gb|AC122148.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNAb0075K12, complete sequence
          Length = 125936

 Score =  266 bits (134), Expect = 3e-68
 Identities = 195/217 (89%), Gaps = 6/217 (2%)
 Strand = Plus / Minus

                                                                         
Query: 1     caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
             ||||||||  |||||||||| || |||||||||||||||||| |||||||||||||||||
Sbjct: 10242 caaatacaaagggtacacta-atgactaagactgaggaagtcacaattaatgcaaaaaca 10184

                                                                         
Query: 61    gctaattggaaagcactagtcatatttctaatcctccaagctaccatcaaataaagatga 120
             ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 10183 gctaattggaaagcaatagtcatatttctaatcctccaagttaccatcaaataaagttga 10124

                                                                         
Query: 121   ctac-----atatttgatccctcacttaaccaaaattgtnnnnnnntacaagaagtanga 175
             ||||     |||||||||||||||||||| |||||||||       ||||||||||| ||
Sbjct: 10123 ctacatattatatttgatccctcacttaatcaaaattgtaataaaatacaagaagtagga 10064

                                                  
Query: 176   ggggtttaatcatgaatccattgattcttctctttaa 212
             |||||||||||||||||||||||||||||||||||||
Sbjct: 10063 ggggtttaatcatgaatccattgattcttctctttaa 10027

---

>gb|AC092750.2| Oryza sativa (japonica cultivar-group) cultivar Nipponbare from
             chromosome 10, complete sequence
          Length = 134933

 Score =  266 bits (134), Expect = 3e-68
 Identities = 195/217 (89%), Gaps = 6/217 (2%)
 Strand = Plus / Minus

                                                                         
Query: 1     caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
             ||||||||  |||||||||| || |||||||||||||||||| |||||||||||||||||
Sbjct: 85175 caaatacaaagggtacacta-atgactaagactgaggaagtcacaattaatgcaaaaaca 85117

                                                                         
Query: 61    gctaattggaaagcactagtcatatttctaatcctccaagctaccatcaaataaagatga 120
             ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 85116 gctaattggaaagcaatagtcatatttctaatcctccaagttaccatcaaataaagttga 85057

                                                                         
Query: 121   ctac-----atatttgatccctcacttaaccaaaattgtnnnnnnntacaagaagtanga 175
             ||||     |||||||||||||||||||| |||||||||       ||||||||||| ||
Sbjct: 85056 ctacatattatatttgatccctcacttaatcaaaattgtaataaaatacaagaagtagga 84997

                                                  
Query: 176   ggggtttaatcatgaatccattgattcttctctttaa 212
             |||||||||||||||||||||||||||||||||||||
Sbjct: 84996 ggggtttaatcatgaatccattgattcttctctttaa 84960

---

>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  266 bits (134), Expect = 3e-68
 Identities = 195/217 (89%), Gaps = 6/217 (2%)
 Strand = Plus / Minus

                                                                            
Query: 1        caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
                ||||||||  |||||||||| || |||||||||||||||||| |||||||||||||||||
Sbjct: 10303850 caaatacaaagggtacacta-atgactaagactgaggaagtcacaattaatgcaaaaaca 10303792

                                                                            
Query: 61       gctaattggaaagcactagtcatatttctaatcctccaagctaccatcaaataaagatga 120
                ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 10303791 gctaattggaaagcaatagtcatatttctaatcctccaagttaccatcaaataaagttga 10303732

                                                                            
Query: 121      ctac-----atatttgatccctcacttaaccaaaattgtnnnnnnntacaagaagtanga 175
                ||||     |||||||||||||||||||| |||||||||       ||||||||||| ||
Sbjct: 10303731 ctacatattatatttgatccctcacttaatcaaaattgtaataaaatacaagaagtagga 10303672

                                                     
Query: 176      ggggtttaatcatgaatccattgattcttctctttaa 212
                |||||||||||||||||||||||||||||||||||||
Sbjct: 10303671 ggggtttaatcatgaatccattgattcttctctttaa 10303635

---

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  266 bits (134), Expect = 3e-68
 Identities = 195/217 (89%), Gaps = 6/217 (2%)
 Strand = Plus / Minus

                                                                            
Query: 1        caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
                |||||||| ||||||||||| || ||| |||||||||||||| |||||||||||||||||
Sbjct: 12845590 caaatacaaggggtacacta-atgacttagactgaggaagtcacaattaatgcaaaaaca 12845532

                                                                            
Query: 61       gctaattggaaagcactagtcatatttctaatcctccaagctaccatcaaataaagatga 120
                ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 12845531 gctaattggaaagcaatagtcatatttctaatcctccaagttaccatcaaataaagttga 12845472

                                                                            
Query: 121      ctac-----atatttgatccctcacttaaccaaaattgtnnnnnnntacaagaagtanga 175
                ||||     |||||||||||||||||||| |||||||||       ||||||||||| ||
Sbjct: 12845471 ctacatattatatttgatccctcacttaatcaaaattgtaataaaatacaagaagtagga 12845412

                                                     
Query: 176      ggggtttaatcatgaatccattgattcttctctttaa 212
                |||||||||||||||||||||||||||||||||||||
Sbjct: 12845411 ggggtttaatcatgaatccattgattcttctctttaa 12845375

---

>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  266 bits (134), Expect = 3e-68
 Identities = 195/217 (89%), Gaps = 6/217 (2%)
 Strand = Plus / Minus

                                                                            
Query: 1        caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
                ||||||||  |||||||||| || |||||||||||||||||| |||||||||||||||||
Sbjct: 10309889 caaatacaaagggtacacta-atgactaagactgaggaagtcacaattaatgcaaaaaca 10309831

                                                                            
Query: 61       gctaattggaaagcactagtcatatttctaatcctccaagctaccatcaaataaagatga 120
                ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 10309830 gctaattggaaagcaatagtcatatttctaatcctccaagttaccatcaaataaagttga 10309771

                                                                            
Query: 121      ctac-----atatttgatccctcacttaaccaaaattgtnnnnnnntacaagaagtanga 175
                ||||     |||||||||||||||||||| |||||||||       ||||||||||| ||
Sbjct: 10309770 ctacatattatatttgatccctcacttaatcaaaattgtaataaaatacaagaagtagga 10309711

                                                     
Query: 176      ggggtttaatcatgaatccattgattcttctctttaa 212
                |||||||||||||||||||||||||||||||||||||
Sbjct: 10309710 ggggtttaatcatgaatccattgattcttctctttaa 10309674

---

>gb|AE009947.2| Saccharum hybrid cultivar SP-80-3280 chloroplast, complete genome
          Length = 141182

 Score =  244 bits (123), Expect = 1e-61
 Identities = 192/217 (88%), Gaps = 7/217 (3%)
 Strand = Plus / Minus

                                                                         
Query: 1     caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
             |||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct: 74149 caaatacaaggggtacacta-attactaaaactgaggaagtcgcaattaatgcaaaaaca 74091

                                                                         
Query: 61    gctaattggaaagcactagtcatatttctaatcctccaagctaccatcaaataaagatga 120
             ||||||||||||||| ||||||||||| ||||||||||| ||||| |||||||||| |||
Sbjct: 74090 gctaattggaaagcaatagtcatatttataatcctccaaactaccttcaaataaagttga 74031

                                                                         
Query: 121   ctaca------tatttgatccctcacttaaccaaaattgtnnnnnnntacaagaagtang 174
             |||||      ||||||||||||||||||| |||||||||       ||||||||||| |
Sbjct: 74030 ctacatatttctatttgatccctcacttaatcaaaattgtacgaaaatacaagaagtagg 73971

                                                  
Query: 175   aggggtttaatcatgaatccattgattcttctcttta 211
             |||||||||||||||||||| ||||||||||| ||||
Sbjct: 73970 aggggtttaatcatgaatccgttgattcttcttttta 73934

---

>gb|AY928077.1| Zea mays cultivar B73 chloroplast, complete genome
          Length = 140454

 Score =  244 bits (123), Expect = 1e-61
 Identities = 192/217 (88%), Gaps = 7/217 (3%)
 Strand = Plus / Minus

                                                                         
Query: 1     caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
             |||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct: 12092 caaatacaaggggtacacta-attactaaaactgaggaagtcgcaattaatgcaaaaaca 12034

                                                                         
Query: 61    gctaattggaaagcactagtcatatttctaatcctccaagctaccatcaaataaagatga 120
             ||||||||||||||| || |||||||| ||||||||||| ||||| |||||||||| |||
Sbjct: 12033 gctaattggaaagcaatattcatatttataatcctccaaactaccttcaaataaagttga 11974

                                                                         
Query: 121   ctaca------tatttgatccctcacttaaccaaaattgtnnnnnnntacaagaagtang 174
             |||||      ||||||||||||||||||| |||||||||       ||||||||||| |
Sbjct: 11973 ctacatatttctatttgatccctcacttaatcaaaattgtatgaaaatacaagaagtagg 11914

                                                  
Query: 175   aggggtttaatcatgaatccattgattcttctcttta 211
             |||||||||||||||||||||||||||||||| ||||
Sbjct: 11913 aggggtttaatcatgaatccattgattcttcttttta 11877

---

>dbj|AP006714.1| Saccharum officinarum chloroplast DNA, complete genome
          Length = 141182

 Score =  244 bits (123), Expect = 1e-61
 Identities = 192/217 (88%), Gaps = 7/217 (3%)
 Strand = Plus / Minus

                                                                         
Query: 1     caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
             |||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct: 12522 caaatacaaggggtacacta-attactaaaactgaggaagtcgcaattaatgcaaaaaca 12464

                                                                         
Query: 61    gctaattggaaagcactagtcatatttctaatcctccaagctaccatcaaataaagatga 120
             ||||||||||||||| ||||||||||| ||||||||||| ||||| |||||||||| |||
Sbjct: 12463 gctaattggaaagcaatagtcatatttataatcctccaaactaccttcaaataaagttga 12404

                                                                         
Query: 121   ctaca------tatttgatccctcacttaaccaaaattgtnnnnnnntacaagaagtang 174
             |||||      ||||||||||||||||||| |||||||||       ||||||||||| |
Sbjct: 12403 ctacatatttctatttgatccctcacttaatcaaaattgtacgaaaatacaagaagtagg 12344

                                                  
Query: 175   aggggtttaatcatgaatccattgattcttctcttta 211
             |||||||||||||||||||| ||||||||||| ||||
Sbjct: 12343 aggggtttaatcatgaatccgttgattcttcttttta 12307

---

>emb|X05295.1|CHZPTRNS Zea perennis cpDNA EcoRI-PstI fragment containing length mutation
           LM-3 from large unique sequence region
          Length = 831

 Score =  230 bits (116), Expect = 2e-57
 Identities = 192/218 (88%), Gaps = 8/218 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatacanggggtacactatattactaagactgaggaagt-cgcaattaatgcaaaaac 59
           |||||||| ||||||||||| |||||||| ||||||||||| ||||||||||||||||||
Sbjct: 737 caaatacaaggggtacacta-attactaaaactgaggaagttcgcaattaatgcaaaaac 679

                                                                       
Query: 60  agctaattggaaagcactagtcatatttctaatcctccaagctaccatcaaataaagatg 119
           |||||||||||||||| || |||||||| ||||||||||| ||||| |||||||||| ||
Sbjct: 678 agctaattggaaagcaatattcatatttataatcctccaaactaccttcaaataaagttg 619

                                                                       
Query: 120 actaca------tatttgatccctcacttaaccaaaattgtnnnnnnntacaagaagtan 173
           ||||||      ||||||||||||||||||| |||||||||       ||||||||||| 
Sbjct: 618 actacatatttctatttgatccctcacttaatcaaaattgtatgaaaatacaagaagtag 559

                                                 
Query: 174 gaggggtttaatcatgaatccattgattcttctcttta 211
           ||||||||||||||||||||||||||||||||| ||||
Sbjct: 558 gaggggtttaatcatgaatccattgattcttcttttta 521

---

>emb|X86563.2|ZMA86563 Zea mays complete chloroplast genome
          Length = 140384

 Score =  224 bits (113), Expect = 1e-55
 Identities = 173/196 (88%), Gaps = 6/196 (3%)
 Strand = Plus / Minus

                                                                         
Query: 22    attactaagactgaggaagtcgcaattaatgcaaaaacagctaattggaaagcactagtc 81
             |||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 12078 attactaaaactgaggaagtcgcaattaatgcaaaaacagctaattggaaagcaatattc 12019

                                                                         
Query: 82    atatttctaatcctccaagctaccatcaaataaagatgactaca------tatttgatcc 135
             |||||| ||||||||||| ||||| |||||||||| ||||||||      ||||||||||
Sbjct: 12018 atatttataatcctccaaactaccttcaaataaagttgactacatatttctatttgatcc 11959

                                                                         
Query: 136   ctcacttaaccaaaattgtnnnnnnntacaagaagtangaggggtttaatcatgaatcca 195
             ||||||||| |||||||||       ||||||||||| ||||||||||||||||||||||
Sbjct: 11958 ctcacttaatcaaaattgtatgaaaatacaagaagtaggaggggtttaatcatgaatcca 11899

                             
Query: 196   ttgattcttctcttta 211
             ||||||||||| ||||
Sbjct: 11898 ttgattcttcttttta 11883

---

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  182 bits (92), Expect = 3e-43
 Identities = 143/159 (89%), Gaps = 6/159 (3%)
 Strand = Plus / Plus

                                                                            
Query: 1        caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
                |||||||| ||||||||||| |  |||||||||||||||||| |||||||||||||||||
Sbjct: 19333594 caaatacaaggggtacacta-aggactaagactgaggaagtcacaattaatgcaaaaaca 19333652

                                                                            
Query: 61       gctaattggaaagcactagtcatatttctaatcctccaagctaccatcaaataaagatga 120
                ||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||| | |
Sbjct: 19333653 gctaattggaaagcaatagtcatatttctaatccttcaagttaccatcaaataaagttaa 19333712

                                                       
Query: 121      ctac-----atatttgatccctcacttaaccaaaattgt 154
                ||||     |||||||||||||||||||| |||||||||
Sbjct: 19333713 ctacgtattatatttgatccctcacttaatcaaaattgt 19333751

---

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  182 bits (92), Expect = 3e-43
 Identities = 143/159 (89%), Gaps = 6/159 (3%)
 Strand = Plus / Plus

                                                                            
Query: 1        caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
                |||||||| ||||||||||| |  |||||||||||||||||| |||||||||||||||||
Sbjct: 19259821 caaatacaaggggtacacta-aggactaagactgaggaagtcacaattaatgcaaaaaca 19259879

                                                                            
Query: 61       gctaattggaaagcactagtcatatttctaatcctccaagctaccatcaaataaagatga 120
                ||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||| | |
Sbjct: 19259880 gctaattggaaagcaatagtcatatttctaatccttcaagttaccatcaaataaagttaa 19259939

                                                       
Query: 121      ctac-----atatttgatccctcacttaaccaaaattgt 154
                ||||     |||||||||||||||||||| |||||||||
Sbjct: 19259940 ctacgtattatatttgatccctcacttaatcaaaattgt 19259978

---

>emb|BX119952.3|CNS09S4V Oryza sativa chromosome 12, . BAC OSJNBb0022A20 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 131975

 Score =  182 bits (92), Expect = 3e-43
 Identities = 143/159 (89%), Gaps = 6/159 (3%)
 Strand = Plus / Plus

                                                                         
Query: 1     caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
             |||||||| ||||||||||| |  |||||||||||||||||| |||||||||||||||||
Sbjct: 39205 caaatacaaggggtacacta-aggactaagactgaggaagtcacaattaatgcaaaaaca 39263

                                                                         
Query: 61    gctaattggaaagcactagtcatatttctaatcctccaagctaccatcaaataaagatga 120
             ||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||| | |
Sbjct: 39264 gctaattggaaagcaatagtcatatttctaatccttcaagttaccatcaaataaagttaa 39323

                                                    
Query: 121   ctac-----atatttgatccctcacttaaccaaaattgt 154
             ||||     |||||||||||||||||||| |||||||||
Sbjct: 39324 ctacgtattatatttgatccctcacttaatcaaaattgt 39362

---

>emb|AL954828.3|CNS08CD4 Oryza sativa chromosome 12, . BAC OSJNBa0022M02 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 163490

 Score =  182 bits (92), Expect = 3e-43
 Identities = 143/159 (89%), Gaps = 6/159 (3%)
 Strand = Plus / Plus

                                                                         
Query: 1     caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
             |||||||| ||||||||||| |  |||||||||||||||||| |||||||||||||||||
Sbjct: 11288 caaatacaaggggtacacta-aggactaagactgaggaagtcacaattaatgcaaaaaca 11346

                                                                         
Query: 61    gctaattggaaagcactagtcatatttctaatcctccaagctaccatcaaataaagatga 120
             ||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||| | |
Sbjct: 11347 gctaattggaaagcaatagtcatatttctaatccttcaagttaccatcaaataaagttaa 11406

                                                    
Query: 121   ctac-----atatttgatccctcacttaaccaaaattgt 154
             ||||     |||||||||||||||||||| |||||||||
Sbjct: 11407 ctacgtattatatttgatccctcacttaatcaaaattgt 11445

---

>ref|XM_465410.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 213

 Score =  172 bits (87), Expect = 3e-40
 Identities = 108/114 (94%), Gaps = 1/114 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
           |||||||| ||||||||||| || |||||||||||||||||| |||||||||||||||||
Sbjct: 101 caaatacaaggggtacacta-atgactaagactgaggaagtcacaattaatgcaaaaaca 159

                                                                 
Query: 61  gctaattggaaagcactagtcatatttctaatcctccaagctaccatcaaataa 114
           ||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct: 160 gctaattggaaagcaatagtcatatttctaatcctccaagttaccatcaaataa 213

---

>gb|AY727480.1| Trillium texanum PsbZ (psbZ) gene, complete cds; and tRNA-Gly
           (trnG) gene, complete sequence; chloroplast
          Length = 1019

 Score =  121 bits (61), Expect = 1e-24
 Identities = 82/89 (92%)
 Strand = Plus / Minus

                                                                       
Query: 27  taagactgaggaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatt 86
           ||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 397 taagattgatgaagtcgcaattaatgcaaaaacagctaattggaaagcaatagtcatgtt 338

                                        
Query: 87  tctaatcctccaagctaccatcaaataaa 115
           | |||||||||||||||||  ||||||||
Sbjct: 337 tataatcctccaagctaccgacaaataaa 309

---

>gb|AY727479.1| Trillium ovatum PsbZ (psbZ) gene, complete cds; and tRNA-Gly (trnG)
           gene, complete sequence; chloroplast
          Length = 1013

 Score =  121 bits (61), Expect = 1e-24
 Identities = 82/89 (92%)
 Strand = Plus / Minus

                                                                       
Query: 27  taagactgaggaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatt 86
           ||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 377 taagattgatgaagtcgcaattaatgcaaaaacagctaattggaaagcaatagtcatgtt 318

                                        
Query: 87  tctaatcctccaagctaccatcaaataaa 115
           | |||||||||||||||||  ||||||||
Sbjct: 317 tataatcctccaagctaccgacaaataaa 289

---

>gb|AY727478.1| Pseudotrillium rivale PsbZ (psbZ) gene, complete cds; and tRNA-Gly
           (trnG) gene, complete sequence; chloroplast
          Length = 985

 Score =  121 bits (61), Expect = 1e-24
 Identities = 82/89 (92%)
 Strand = Plus / Minus

                                                                       
Query: 27  taagactgaggaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatt 86
           ||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 390 taagattgatgaagtcgcaattaatgcaaaaacagctaattggaaagcaatagtcatgtt 331

                                        
Query: 87  tctaatcctccaagctaccatcaaataaa 115
           | |||||||||||||||||  ||||||||
Sbjct: 330 tataatcctccaagctaccgacaaataaa 302

---

>gb|AY337664.1| Pandanus princeps isolate Sp_22 chloroplast trnS-ycf9 intergenic
           spacer, complete sequence
          Length = 496

 Score =  119 bits (60), Expect = 4e-24
 Identities = 75/80 (93%)
 Strand = Plus / Minus

                                                                       
Query: 27  taagactgaggaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatt 86
           ||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 417 taagattgatgaagtcgcaattaatgcaaaaacagctaattggaaagcaatagtcatgtt 358

                               
Query: 87  tctaatcctccaagctacca 106
           | ||||||||||||||||||
Sbjct: 357 tgtaatcctccaagctacca 338



 Score = 42.1 bits (21), Expect = 0.81
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 180 tttaatcatgaatccattgattctt 204
           |||||||||||||| ||||||||||
Sbjct: 284 tttaatcatgaatcaattgattctt 260

---

>gb|AY727477.1| Hibiscus mechowii PsbZ (psbZ) gene, complete cds; and tRNA-Gly
           (trnG) gene, complete sequence; chloroplast
          Length = 1634

 Score =  119 bits (60), Expect = 4e-24
 Identities = 99/111 (89%), Gaps = 1/111 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
           ||||||||  |||||||||| || | ||||| ||| ||||| ||||||||||||||||||
Sbjct: 463 caaatacaacgggtacacta-atcagtaagattgacgaagtagcaattaatgcaaaaaca 405

                                                              
Query: 61  gctaattggaaagcactagtcatatttctaatcctccaagctaccatcaaa 111
           || |||||||||||| ||||||| |||||||||||||||||||||| ||||
Sbjct: 404 gccaattggaaagcaatagtcatgtttctaatcctccaagctaccaacaaa 354

---

>gb|AY727475.1| Hibiscus cannabinus PsbZ (psbZ) gene, complete cds; and tRNA-Gly
           (trnG) gene, complete sequence; chloroplast
          Length = 1515

 Score =  119 bits (60), Expect = 4e-24
 Identities = 99/111 (89%), Gaps = 1/111 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
           ||||||||  |||||||||| || | ||||| ||| ||||| ||||||||||||||||||
Sbjct: 461 caaatacaacgggtacacta-atcagtaagattgacgaagtagcaattaatgcaaaaaca 403

                                                              
Query: 61  gctaattggaaagcactagtcatatttctaatcctccaagctaccatcaaa 111
           || |||||||||||| ||||||| |||||||||||||||||||||| ||||
Sbjct: 402 gccaattggaaagcaatagtcatgtttctaatcctccaagctaccaacaaa 352

---

>emb|AM085641.1| Ranunculus pygmaeus chloroplast psbZ gene for photosystem II
           reaction center Z protein and tRNA-Gly gene for transfer
           RNA-Gly, isolate RP30
          Length = 1153

 Score =  119 bits (60), Expect = 4e-24
 Identities = 102/115 (88%), Gaps = 1/115 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
           ||||||||  |||||||||| || | ||||| ||| ||||| ||||||||||||||||||
Sbjct: 449 caaatacaacgggtacacta-atcaataagattgatgaagtagcaattaatgcaaaaaca 391

                                                                  
Query: 61  gctaattggaaagcactagtcatatttctaatcctccaagctaccatcaaataaa 115
           || |||||||||||| |||||||  ||||||||||||||||||||| ||||||||
Sbjct: 390 gccaattggaaagcaatagtcatgcttctaatcctccaagctaccaacaaataaa 336

---

>emb|AM085640.1| Ranunculus pygmaeus chloroplast psbZ gene for photosystem II
           reaction center Z protein and tRNA-Gly gene for transfer
           RNA-Gly, isolate RP28
          Length = 1153

 Score =  119 bits (60), Expect = 4e-24
 Identities = 102/115 (88%), Gaps = 1/115 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
           ||||||||  |||||||||| || | ||||| ||| ||||| ||||||||||||||||||
Sbjct: 449 caaatacaacgggtacacta-atcaataagattgatgaagtagcaattaatgcaaaaaca 391

                                                                  
Query: 61  gctaattggaaagcactagtcatatttctaatcctccaagctaccatcaaataaa 115
           || |||||||||||| |||||||  ||||||||||||||||||||| ||||||||
Sbjct: 390 gccaattggaaagcaatagtcatgcttctaatcctccaagctaccaacaaataaa 336

---

>emb|AM085639.1| Ranunculus pygmaeus chloroplast psbZ gene for photosystem II
           reaction center Z protein and tRNA-Gly gene for transfer
           RNA-Gly, isolate RP27
          Length = 1153

 Score =  119 bits (60), Expect = 4e-24
 Identities = 102/115 (88%), Gaps = 1/115 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
           ||||||||  |||||||||| || | ||||| ||| ||||| ||||||||||||||||||
Sbjct: 449 caaatacaacgggtacacta-atcaataagattgatgaagtagcaattaatgcaaaaaca 391

                                                                  
Query: 61  gctaattggaaagcactagtcatatttctaatcctccaagctaccatcaaataaa 115
           || |||||||||||| |||||||  ||||||||||||||||||||| ||||||||
Sbjct: 390 gccaattggaaagcaatagtcatgcttctaatcctccaagctaccaacaaataaa 336

---

>emb|AM085638.1| Ranunculus pygmaeus chloroplast psbZ gene for photosystem II
           reaction center Z protein and tRNA-Gly gene for transfer
           RNA-Gly, isolate RP26
          Length = 1153

 Score =  119 bits (60), Expect = 4e-24
 Identities = 102/115 (88%), Gaps = 1/115 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
           ||||||||  |||||||||| || | ||||| ||| ||||| ||||||||||||||||||
Sbjct: 449 caaatacaacgggtacacta-atcaataagattgatgaagtagcaattaatgcaaaaaca 391

                                                                  
Query: 61  gctaattggaaagcactagtcatatttctaatcctccaagctaccatcaaataaa 115
           || |||||||||||| |||||||  ||||||||||||||||||||| ||||||||
Sbjct: 390 gccaattggaaagcaatagtcatgcttctaatcctccaagctaccaacaaataaa 336

---

>emb|AM085637.1| Ranunculus pygmaeus chloroplast psbZ gene for photosystem II
           reaction center Z protein and tRNA-Gly gene for transfer
           RNA-Gly, isolate RP25
          Length = 1153

 Score =  119 bits (60), Expect = 4e-24
 Identities = 102/115 (88%), Gaps = 1/115 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
           ||||||||  |||||||||| || | ||||| ||| ||||| ||||||||||||||||||
Sbjct: 449 caaatacaacgggtacacta-atcaataagattgatgaagtagcaattaatgcaaaaaca 391

                                                                  
Query: 61  gctaattggaaagcactagtcatatttctaatcctccaagctaccatcaaataaa 115
           || |||||||||||| |||||||  ||||||||||||||||||||| ||||||||
Sbjct: 390 gccaattggaaagcaatagtcatgcttctaatcctccaagctaccaacaaataaa 336

---

>emb|AM085636.1| Ranunculus pygmaeus chloroplast psbZ gene for photosystem II
           reaction center Z protein and tRNA-Gly gene for transfer
           RNA-Gly, isolate RP24
          Length = 1153

 Score =  119 bits (60), Expect = 4e-24
 Identities = 102/115 (88%), Gaps = 1/115 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
           ||||||||  |||||||||| || | ||||| ||| ||||| ||||||||||||||||||
Sbjct: 449 caaatacaacgggtacacta-atcaataagattgatgaagtagcaattaatgcaaaaaca 391

                                                                  
Query: 61  gctaattggaaagcactagtcatatttctaatcctccaagctaccatcaaataaa 115
           || |||||||||||| |||||||  ||||||||||||||||||||| ||||||||
Sbjct: 390 gccaattggaaagcaatagtcatgcttctaatcctccaagctaccaacaaataaa 336

---

>emb|AM085635.1| Ranunculus pygmaeus chloroplast psbZ gene for photosystem II
           reaction center Z protein and tRNA-Gly gene for transfer
           RNA-Gly, isolate RP19
          Length = 1153

 Score =  119 bits (60), Expect = 4e-24
 Identities = 102/115 (88%), Gaps = 1/115 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
           ||||||||  |||||||||| || | ||||| ||| ||||| ||||||||||||||||||
Sbjct: 449 caaatacaacgggtacacta-atcaataagattgatgaagtagcaattaatgcaaaaaca 391

                                                                  
Query: 61  gctaattggaaagcactagtcatatttctaatcctccaagctaccatcaaataaa 115
           || |||||||||||| |||||||  ||||||||||||||||||||| ||||||||
Sbjct: 390 gccaattggaaagcaatagtcatgcttctaatcctccaagctaccaacaaataaa 336

---

>emb|AM085634.1| Ranunculus pygmaeus chloroplast psbZ gene for photosystem II
           reaction center Z protein and tRNA-Gly gene for transfer
           RNA-Gly, isolate RP14
          Length = 1153

 Score =  119 bits (60), Expect = 4e-24
 Identities = 102/115 (88%), Gaps = 1/115 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
           ||||||||  |||||||||| || | ||||| ||| ||||| ||||||||||||||||||
Sbjct: 449 caaatacaacgggtacacta-atcaataagattgatgaagtagcaattaatgcaaaaaca 391

                                                                  
Query: 61  gctaattggaaagcactagtcatatttctaatcctccaagctaccatcaaataaa 115
           || |||||||||||| |||||||  ||||||||||||||||||||| ||||||||
Sbjct: 390 gccaattggaaagcaatagtcatgcttctaatcctccaagctaccaacaaataaa 336

---

>emb|AM085633.1| Ranunculus pygmaeus chloroplast psbZ gene for photosystem II
           reaction center Z protein and tRNA-Gly gene for transfer
           RNA-Gly, isolate RP11
          Length = 1153

 Score =  119 bits (60), Expect = 4e-24
 Identities = 102/115 (88%), Gaps = 1/115 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
           ||||||||  |||||||||| || | ||||| ||| ||||| ||||||||||||||||||
Sbjct: 449 caaatacaacgggtacacta-atcaataagattgatgaagtagcaattaatgcaaaaaca 391

                                                                  
Query: 61  gctaattggaaagcactagtcatatttctaatcctccaagctaccatcaaataaa 115
           || |||||||||||| |||||||  ||||||||||||||||||||| ||||||||
Sbjct: 390 gccaattggaaagcaatagtcatgcttctaatcctccaagctaccaacaaataaa 336

---

>emb|AM085632.1| Ranunculus pygmaeus chloroplast psbZ gene for photosystem II
           reaction center Z protein and tRNA-Gly gene for transfer
           RNA-Gly, isolate RP10
          Length = 1153

 Score =  119 bits (60), Expect = 4e-24
 Identities = 102/115 (88%), Gaps = 1/115 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
           ||||||||  |||||||||| || | ||||| ||| ||||| ||||||||||||||||||
Sbjct: 449 caaatacaacgggtacacta-atcaataagattgatgaagtagcaattaatgcaaaaaca 391

                                                                  
Query: 61  gctaattggaaagcactagtcatatttctaatcctccaagctaccatcaaataaa 115
           || |||||||||||| |||||||  ||||||||||||||||||||| ||||||||
Sbjct: 390 gccaattggaaagcaatagtcatgcttctaatcctccaagctaccaacaaataaa 336

---

>emb|AM085631.1| Ranunculus pygmaeus chloroplast psbZ gene for photosystem II
           reaction center Z protein and tRNA-Gly gene for transfer
           RNA-Gly, isolate RP7
          Length = 1153

 Score =  119 bits (60), Expect = 4e-24
 Identities = 102/115 (88%), Gaps = 1/115 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
           ||||||||  |||||||||| || | ||||| ||| ||||| ||||||||||||||||||
Sbjct: 449 caaatacaacgggtacacta-atcaataagattgatgaagtagcaattaatgcaaaaaca 391

                                                                  
Query: 61  gctaattggaaagcactagtcatatttctaatcctccaagctaccatcaaataaa 115
           || |||||||||||| |||||||  ||||||||||||||||||||| ||||||||
Sbjct: 390 gccaattggaaagcaatagtcatgcttctaatcctccaagctaccaacaaataaa 336

---

>emb|AM085630.1| Ranunculus pygmaeus chloroplast psbZ gene for photosystem II
           reaction center Z protein and tRNA-Gly gene for transfer
           RNA-Gly, isolate RP3
          Length = 1153

 Score =  119 bits (60), Expect = 4e-24
 Identities = 102/115 (88%), Gaps = 1/115 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
           ||||||||  |||||||||| || | ||||| ||| ||||| ||||||||||||||||||
Sbjct: 449 caaatacaacgggtacacta-atcaataagattgatgaagtagcaattaatgcaaaaaca 391

                                                                  
Query: 61  gctaattggaaagcactagtcatatttctaatcctccaagctaccatcaaataaa 115
           || |||||||||||| |||||||  ||||||||||||||||||||| ||||||||
Sbjct: 390 gccaattggaaagcaatagtcatgcttctaatcctccaagctaccaacaaataaa 336

---

>gb|DQ345959.1| Gossypium hirsutum cultivar coker 310 FR chloroplast, complete genome
          Length = 160301

 Score =  113 bits (57), Expect = 3e-22
 Identities = 78/85 (91%)
 Strand = Plus / Minus

                                                                         
Query: 27    taagactgaggaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatt 86
             ||||| ||| ||||| |||||||||||||||||||| |||||||||||| ||||||| ||
Sbjct: 37790 taagattgacgaagtagcaattaatgcaaaaacagccaattggaaagcaatagtcatgtt 37731

                                      
Query: 87    tctaatcctccaagctaccatcaaa 111
             |||||||||||||||||||| ||||
Sbjct: 37730 tctaatcctccaagctaccaacaaa 37706

---

>ref|NM_195973.1| Oryza sativa (japonica cultivar-group) hypothetical protein ORF62
          from chromosome 10 chloroplast insertion
          (OSJNBb0075K12.23), mRNA
          Length = 189

 Score =  111 bits (56), Expect = 1e-21
 Identities = 77/83 (92%), Gaps = 1/83 (1%)
 Strand = Plus / Minus

                                                                      
Query: 1  caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
          ||||||||  |||||||||| || |||||||||||||||||| |||||||||||||||||
Sbjct: 82 caaatacaaagggtacacta-atgactaagactgaggaagtcacaattaatgcaaaaaca 24

                                 
Query: 61 gctaattggaaagcactagtcat 83
          ||||||||||||||| |||||||
Sbjct: 23 gctaattggaaagcaatagtcat 1

---

>gb|AY337661.1| Cyclanthus bipartitus isolate Sp_19 chloroplast trnS-ycf9
           intergenic spacer, complete sequence
          Length = 484

 Score =  111 bits (56), Expect = 1e-21
 Identities = 71/76 (93%)
 Strand = Plus / Minus

                                                                       
Query: 27  taagactgaggaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatt 86
           ||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 408 taagattgatgaagtcgcaattaatgcaaaaacagctaattggaaagcaatagtcatgtt 349

                           
Query: 87  tctaatcctccaagct 102
           | ||||||||||||||
Sbjct: 348 tgtaatcctccaagct 333

---

>gb|AY337653.1| Pandanus palustris isolate Sp_11 chloroplast trnS-ycf9 intergenic
           spacer, complete sequence
          Length = 498

 Score =  111 bits (56), Expect = 1e-21
 Identities = 71/76 (93%)
 Strand = Plus / Minus

                                                                       
Query: 27  taagactgaggaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatt 86
           ||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 417 taagattgatgaagtcgcaattaatgcaaaaacagctaattggaaagcaatagtcatgtt 358

                           
Query: 87  tctaatcctccaagct 102
           | ||||||||||||||
Sbjct: 357 tgtaatcctccaagct 342



 Score = 42.1 bits (21), Expect = 0.81
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 180 tttaatcatgaatccattgattctt 204
           |||||||||||||| ||||||||||
Sbjct: 283 tttaatcatgaatcaattgattctt 259

---

>gb|AY337650.1| Pandanus maximus isolate Sp_8 chloroplast trnS-ycf9 intergenic
           spacer, complete sequence
          Length = 497

 Score =  111 bits (56), Expect = 1e-21
 Identities = 71/76 (93%)
 Strand = Plus / Minus

                                                                       
Query: 27  taagactgaggaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatt 86
           ||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 418 taagattgatgaagtcgcaattaatgcaaaaacagctaattggaaagcaatagtcatgtt 359

                           
Query: 87  tctaatcctccaagct 102
           | ||||||||||||||
Sbjct: 358 tgtaatcctccaagct 343



 Score = 42.1 bits (21), Expect = 0.81
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 180 tttaatcatgaatccattgattctt 204
           |||||||||||||| ||||||||||
Sbjct: 284 tttaatcatgaatcaattgattctt 260

---

>gb|AY337644.1| Pandanus eydouxia isolate Sp_2 chloroplast trnS-ycf9 intergenic
           spacer, complete sequence
          Length = 496

 Score =  111 bits (56), Expect = 1e-21
 Identities = 71/76 (93%)
 Strand = Plus / Minus

                                                                       
Query: 27  taagactgaggaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatt 86
           ||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 417 taagattgatgaagtcgcaattaatgcaaaaacagctaattggaaagcaatagtcatgtt 358

                           
Query: 87  tctaatcctccaagct 102
           | ||||||||||||||
Sbjct: 357 tgtaatcctccaagct 342



 Score = 42.1 bits (21), Expect = 0.81
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 180 tttaatcatgaatccattgattctt 204
           |||||||||||||| ||||||||||
Sbjct: 283 tttaatcatgaatcaattgattctt 259

---

>gb|AY337643.1| Pandanus microcarpus isolate Sp_1 chloroplast trnS-ycf9 intergenic
           spacer, complete sequence
          Length = 499

 Score =  111 bits (56), Expect = 1e-21
 Identities = 71/76 (93%)
 Strand = Plus / Minus

                                                                       
Query: 27  taagactgaggaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatt 86
           ||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 418 taagattgatgaagtcgcaattaatgcaaaaacagctaattggaaagcaatagtcatgtt 359

                           
Query: 87  tctaatcctccaagct 102
           | ||||||||||||||
Sbjct: 358 tgtaatcctccaagct 343



 Score = 42.1 bits (21), Expect = 0.81
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 180 tttaatcatgaatccattgattctt 204
           |||||||||||||| ||||||||||
Sbjct: 284 tttaatcatgaatcaattgattctt 260

---

>gb|DQ424856.1| Vitis vinifera cultivar Maxxa chloroplast, complete genome
          Length = 160928

 Score =  111 bits (56), Expect = 1e-21
 Identities = 98/111 (88%), Gaps = 1/111 (0%)
 Strand = Plus / Minus

                                                                         
Query: 1     caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
             ||||||||  |||||||||| || | ||||| ||| ||||| ||||||||||||||||||
Sbjct: 39319 caaatacaacgggtacacta-atcagtaagattgatgaagtagcaattaatgcaaaaaca 39261

                                                                
Query: 61    gctaattggaaagcactagtcatatttctaatcctccaagctaccatcaaa 111
             || |||||||||||| |||||||  ||||||||||||||||||||| ||||
Sbjct: 39260 gccaattggaaagcaatagtcatgcttctaatcctccaagctaccaacaaa 39210

---

>gb|AY727476.1| Hibiscus macrophyllus PsbZ (psbZ) gene, complete cds; and tRNA-Gly
           (trnG) gene, complete sequence; chloroplast
          Length = 1532

 Score =  111 bits (56), Expect = 1e-21
 Identities = 98/111 (88%), Gaps = 1/111 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
           ||||||||  |||||||||| || | ||||| ||| ||||| ||||||||||||||||||
Sbjct: 457 caaatacaacgggtacacta-atcagtaagattgacgaagtagcaattaatgcaaaaaca 399

                                                              
Query: 61  gctaattggaaagcactagtcatatttctaatcctccaagctaccatcaaa 111
           || |||||||||||| ||||||| |||||||||||||||| ||||| ||||
Sbjct: 398 gccaattggaaagcaatagtcatgtttctaatcctccaaggtaccaacaaa 348

---

>gb|AY337654.1| Martellidendron hornei isolate Sp_12 chloroplast trnS-ycf9
           intergenic spacer, complete sequence
          Length = 508

 Score =  107 bits (54), Expect = 2e-20
 Identities = 79/86 (91%), Gaps = 1/86 (1%)
 Strand = Plus / Minus

                                                                       
Query: 27  taagactgaggaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatt 86
           ||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 429 taagattgatgaagtcgcaattaatgcaaaaacagctaattggaaagcaatagtcatgtt 370

                                     
Query: 87  tctaatcctccaagctaccatcaaat 112
           | | |||||||||||||||| |||||
Sbjct: 369 tgt-atcctccaagctaccaacaaat 345



 Score = 42.1 bits (21), Expect = 0.81
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 180 tttaatcatgaatccattgattctt 204
           |||||||||||||| ||||||||||
Sbjct: 288 tttaatcatgaatcaattgattctt 264

---

>gb|AY337652.1| Martellidendron hornei isolate Sp_10 chloroplast trnS-ycf9
           intergenic spacer, complete sequence
          Length = 508

 Score =  107 bits (54), Expect = 2e-20
 Identities = 79/86 (91%), Gaps = 1/86 (1%)
 Strand = Plus / Minus

                                                                       
Query: 27  taagactgaggaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatt 86
           ||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 427 taagattgatgaagtcgcaattaatgcaaaaacagctaattggaaagcaatagtcatgtt 368

                                     
Query: 87  tctaatcctccaagctaccatcaaat 112
           | | |||||||||||||||| |||||
Sbjct: 367 tgt-atcctccaagctaccaacaaat 343



 Score = 42.1 bits (21), Expect = 0.81
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 180 tttaatcatgaatccattgattctt 204
           |||||||||||||| ||||||||||
Sbjct: 286 tttaatcatgaatcaattgattctt 262

---

>gb|AY337646.1| Martellidendron cruciatum isolate Sp_4 chloroplast trnS-ycf9
           intergenic spacer, complete sequence
          Length = 510

 Score =  107 bits (54), Expect = 2e-20
 Identities = 79/86 (91%), Gaps = 1/86 (1%)
 Strand = Plus / Minus

                                                                       
Query: 27  taagactgaggaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatt 86
           ||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 429 taagattgatgaagtcgcaattaatgcaaaaacagctaattggaaagcaatagtcatgtt 370

                                     
Query: 87  tctaatcctccaagctaccatcaaat 112
           | | |||||||||||||||| |||||
Sbjct: 369 tgt-atcctccaagctaccaacaaat 345



 Score = 42.1 bits (21), Expect = 0.81
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 180 tttaatcatgaatccattgattctt 204
           |||||||||||||| ||||||||||
Sbjct: 288 tttaatcatgaatcaattgattctt 264

---

>gb|AY337645.1| Martellidendron kariangensis isolate Sp_3 chloroplast trnS-ycf9
           intergenic spacer, complete sequence
          Length = 510

 Score =  107 bits (54), Expect = 2e-20
 Identities = 79/86 (91%), Gaps = 1/86 (1%)
 Strand = Plus / Minus

                                                                       
Query: 27  taagactgaggaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatt 86
           ||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 429 taagattgatgaagtcgcaattaatgcaaaaacagctaattggaaagcaatagtcatgtt 370

                                     
Query: 87  tctaatcctccaagctaccatcaaat 112
           | | |||||||||||||||| |||||
Sbjct: 369 tgt-atcctccaagctaccaacaaat 345

---

>gb|AY642483.1| Cypripedium acaule tRNA-Ser (trnS) gene and trnS-trnfM intergenic
           spacer, partial sequence; chloroplast
          Length = 930

 Score =  105 bits (53), Expect = 6e-20
 Identities = 98/112 (87%), Gaps = 1/112 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
           ||||||||  |||||||||| || | ||||| | | ||||| ||||||||||||||||||
Sbjct: 394 caaatacaacgggtacacta-atcagtaagattaatgaagttgcaattaatgcaaaaaca 336

                                                               
Query: 61  gctaattggaaagcactagtcatatttctaatcctccaagctaccatcaaat 112
           ||||||||||||||| ||||||| ||| ||||||||||| |||||| |||||
Sbjct: 335 gctaattggaaagcaatagtcatgtttgtaatcctccaaactaccaacaaat 284

---

>gb|AY642481.1| Paphiopedilum micranthum tRNA-Ser (trnS) gene and trnS-trnfM
           intergenic spacer, partial sequence; chloroplast
          Length = 1008

 Score =  105 bits (53), Expect = 6e-20
 Identities = 98/112 (87%), Gaps = 1/112 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
           ||||||||  |||||||||| || | ||||| | | ||||| ||||||||||||||||||
Sbjct: 404 caaatacaacgggtacacta-atcagtaagattaatgaagttgcaattaatgcaaaaaca 346

                                                               
Query: 61  gctaattggaaagcactagtcatatttctaatcctccaagctaccatcaaat 112
           ||||||||||||||| ||||||| ||| ||||||||||| |||||| |||||
Sbjct: 345 gctaattggaaagcaatagtcatgtttgtaatcctccaaactaccaacaaat 294

---

>gb|AY642469.1| Phragmipedium lindenii tRNA-Ser (trnS) gene and trnS-trnfM
           intergenic spacer, partial sequence; chloroplast
          Length = 1003

 Score =  105 bits (53), Expect = 6e-20
 Identities = 98/112 (87%), Gaps = 1/112 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
           ||||||||  |||||||||| || | ||||| | | ||||| ||||||||||||||||||
Sbjct: 395 caaatacaacgggtacacta-atcagtaagattaatgaagttgcaattaatgcaaaaaca 337

                                                               
Query: 61  gctaattggaaagcactagtcatatttctaatcctccaagctaccatcaaat 112
           ||||||||||||||| ||||||| ||| ||||||||||| |||||| |||||
Sbjct: 336 gctaattggaaagcaatagtcatgtttgtaatcctccaaactaccaacaaat 285

---

>gb|AY642468.1| Phragmipedium sargentianum tRNA-Ser (trnS) gene and trnS-trnfM
           intergenic spacer, partial sequence; chloroplast
          Length = 1009

 Score =  105 bits (53), Expect = 6e-20
 Identities = 98/112 (87%), Gaps = 1/112 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
           ||||||||  |||||||||| || | ||||| | | ||||| ||||||||||||||||||
Sbjct: 395 caaatacaacgggtacacta-atcagtaagattaatgaagttgcaattaatgcaaaaaca 337

                                                               
Query: 61  gctaattggaaagcactagtcatatttctaatcctccaagctaccatcaaat 112
           ||||||||||||||| ||||||| ||| ||||||||||| |||||| |||||
Sbjct: 336 gctaattggaaagcaatagtcatgtttgtaatcctccaaactaccaacaaat 285

---

>gb|AY642467.1| Phragmipedium boissierianum tRNA-Ser (trnS) gene and trnS-trnfM
           intergenic spacer, partial sequence; chloroplast
          Length = 1003

 Score =  105 bits (53), Expect = 6e-20
 Identities = 98/112 (87%), Gaps = 1/112 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
           ||||||||  |||||||||| || | ||||| | | ||||| ||||||||||||||||||
Sbjct: 395 caaatacaacgggtacacta-atcagtaagattaatgaagttgcaattaatgcaaaaaca 337

                                                               
Query: 61  gctaattggaaagcactagtcatatttctaatcctccaagctaccatcaaat 112
           ||||||||||||||| ||||||| ||| ||||||||||| |||||| |||||
Sbjct: 336 gctaattggaaagcaatagtcatgtttgtaatcctccaaactaccaacaaat 285

---

>gb|AY642466.1| Phragmipedium longifolium tRNA-Ser (trnS) gene and trnS-trnfM
           intergenic spacer, partial sequence; chloroplast
          Length = 1003

 Score =  105 bits (53), Expect = 6e-20
 Identities = 98/112 (87%), Gaps = 1/112 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
           ||||||||  |||||||||| || | ||||| | | ||||| ||||||||||||||||||
Sbjct: 395 caaatacaacgggtacacta-atcagtaagattaatgaagttgcaattaatgcaaaaaca 337

                                                               
Query: 61  gctaattggaaagcactagtcatatttctaatcctccaagctaccatcaaat 112
           ||||||||||||||| ||||||| ||| ||||||||||| |||||| |||||
Sbjct: 336 gctaattggaaagcaatagtcatgtttgtaatcctccaaactaccaacaaat 285

---

>gb|AY642465.1| Phragmipedium caudatum tRNA-Ser (trnS) gene and trnS-trnfM
           intergenic spacer, partial sequence; chloroplast
          Length = 1003

 Score =  105 bits (53), Expect = 6e-20
 Identities = 98/112 (87%), Gaps = 1/112 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
           ||||||||  |||||||||| || | ||||| | | ||||| ||||||||||||||||||
Sbjct: 395 caaatacaacgggtacacta-atcagtaagattaatgaagttgcaattaatgcaaaaaca 337

                                                               
Query: 61  gctaattggaaagcactagtcatatttctaatcctccaagctaccatcaaat 112
           ||||||||||||||| ||||||| ||| ||||||||||| |||||| |||||
Sbjct: 336 gctaattggaaagcaatagtcatgtttgtaatcctccaaactaccaacaaat 285

---

>gb|AY337648.1| Pandanus linguiformis isolate Sp_6 chloroplast trnS-ycf9 intergenic
           spacer, complete sequence
          Length = 496

 Score =  105 bits (53), Expect = 6e-20
 Identities = 73/80 (91%)
 Strand = Plus / Minus

                                                                       
Query: 27  taagactgaggaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatt 86
           ||||| ||| |||||| |||||||||||||| ||||||||||||||||| ||||||| ||
Sbjct: 417 taagattgatgaagtcncaattaatgcaaaagcagctaattggaaagcaatagtcatgtt 358

                               
Query: 87  tctaatcctccaagctacca 106
           | ||||||||||||||||||
Sbjct: 357 tgtaatcctccaagctacca 338



 Score = 42.1 bits (21), Expect = 0.81
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 180 tttaatcatgaatccattgattctt 204
           |||||||||||||| ||||||||||
Sbjct: 284 tttaatcatgaatcaattgattctt 260

---

>gb|AY916449.1| Phalaenopsis aphrodite subsp. formosana plastid, complete genome
          Length = 148964

 Score =  105 bits (53), Expect = 6e-20
 Identities = 98/112 (87%), Gaps = 1/112 (0%)
 Strand = Plus / Minus

                                                                         
Query: 1     caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
             ||||||||  |||||||||| || | ||||| | | ||||| ||||||||||||||||||
Sbjct: 37447 caaatacaacgggtacacta-atcagtaagattaatgaagttgcaattaatgcaaaaaca 37389

                                                                 
Query: 61    gctaattggaaagcactagtcatatttctaatcctccaagctaccatcaaat 112
             ||||||||||||||| ||||||| ||| ||||||||||| |||||| |||||
Sbjct: 37388 gctaattggaaagcaatagtcatgtttgtaatcctccaaactaccaacaaat 37337

---

>gb|AY642484.1| Cypripedium parviflorum var. parviflorum tRNA-Ser (trnS) gene and
           trnS-trnfM intergenic spacer, partial sequence;
           chloroplast
          Length = 809

 Score =  103 bits (52), Expect = 3e-19
 Identities = 70/76 (92%)
 Strand = Plus / Minus

                                                                       
Query: 37  gaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatttctaatcctc 96
           ||||| ||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||
Sbjct: 364 gaagttgcaattaatgcaaaaacagctaattggaaagcaatagtcatgtttgtaatcctc 305

                           
Query: 97  caagctaccatcaaat 112
           ||| |||||| |||||
Sbjct: 304 caaactaccaacaaat 289

---

>gb|DQ069353.1| Typha latifolia photosystem II reaction center Z protein (psbZ)
          gene, partial cds; chloroplast
          Length = 186

 Score =  103 bits (52), Expect = 3e-19
 Identities = 76/83 (91%), Gaps = 1/83 (1%)
 Strand = Plus / Minus

                                                                      
Query: 1  caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
          ||||||||  |||||||||| || | ||||||||| ||||||||||||||||||||||||
Sbjct: 82 caaatacaacgggtacacta-atcagtaagactgatgaagtcgcaattaatgcaaaaaca 24

                                 
Query: 61 gctaattggaaagcactagtcat 83
          ||||||||||||||| |||||||
Sbjct: 23 gctaattggaaagcaatagtcat 1

---

>gb|AY337663.1| Asplundia sp. MWC-2003 isolate Sp_21 chloroplast trnS-ycf9
           intergenic spacer, complete sequence
          Length = 469

 Score =  103 bits (52), Expect = 3e-19
 Identities = 70/76 (92%)
 Strand = Plus / Minus

                                                                       
Query: 27  taagactgaggaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatt 86
           ||||| ||| ||||||||||||||||||||| ||||||||||||||||| ||||||| ||
Sbjct: 392 taagattgatgaagtcgcaattaatgcaaaaccagctaattggaaagcaatagtcatgtt 333

                           
Query: 87  tctaatcctccaagct 102
           | ||||||||||||||
Sbjct: 332 tgtaatcctccaagct 317

---

>gb|AY337651.1| Pandanus peyrierasii isolate Sp_9 chloroplast trnS-ycf9 intergenic
           spacer, complete sequence
          Length = 497

 Score =  103 bits (52), Expect = 3e-19
 Identities = 74/80 (92%), Gaps = 1/80 (1%)
 Strand = Plus / Minus

                                                                       
Query: 27  taagactgaggaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatt 86
           ||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 418 taagattgatgaagtcgcaattaatgcaaaaacagctaattggaaagcaatagtcatgtt 359

                               
Query: 87  tctaatcctccaagctacca 106
           | | ||||||||||||||||
Sbjct: 358 tgt-atcctccaagctacca 340



 Score = 42.1 bits (21), Expect = 0.81
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 180 tttaatcatgaatccattgattctt 204
           |||||||||||||| ||||||||||
Sbjct: 286 tttaatcatgaatcaattgattctt 262

---

>emb|AJ271079.2|OEL271079 Oenothera elata subsp. hookeri chloroplast plastome I, complete
             sequence
          Length = 163935

 Score =  103 bits (52), Expect = 3e-19
 Identities = 97/111 (87%), Gaps = 1/111 (0%)
 Strand = Plus / Plus

                                                                         
Query: 1     caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
             ||||||||  |||||||||| || | ||| | ||| ||||| ||||||||||||||||||
Sbjct: 29280 caaatacaacgggtacacta-atcagtaaaagtgatgaagtagcaattaatgcaaaaaca 29338

                                                                
Query: 61    gctaattggaaagcactagtcatatttctaatcctccaagctaccatcaaa 111
             || |||||||||||| |||||||  ||||||||||||||||||||| ||||
Sbjct: 29339 gccaattggaaagcaatagtcatgcttctaatcctccaagctaccaacaaa 29389

---

>gb|AY727483.1| Prunus virginiana PsbZ (psbZ) gene, complete cds; and tRNA-Gly
           (trnG) gene, complete sequence; chloroplast
          Length = 1197

 Score =  101 bits (51), Expect = 1e-18
 Identities = 69/75 (92%)
 Strand = Plus / Minus

                                                                       
Query: 37  gaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatttctaatcctc 96
           ||||| |||||||||||||||||||| |||||||||||| ||||||| ||||||||||||
Sbjct: 420 gaagtagcaattaatgcaaaaacagccaattggaaagcaatagtcatgtttctaatcctc 361

                          
Query: 97  caagctaccatcaaa 111
           ||| |||||| ||||
Sbjct: 360 caatctaccaacaaa 346

---

>gb|AY727482.1| Prunus nigra PsbZ (psbZ) gene, complete cds; and tRNA-Gly (trnG)
           gene, complete sequence; chloroplast
          Length = 1008

 Score =  101 bits (51), Expect = 1e-18
 Identities = 69/75 (92%)
 Strand = Plus / Minus

                                                                       
Query: 37  gaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatttctaatcctc 96
           ||||| |||||||||||||||||||| |||||||||||| ||||||| ||||||||||||
Sbjct: 389 gaagtagcaattaatgcaaaaacagccaattggaaagcaatagtcatgtttctaatcctc 330

                          
Query: 97  caagctaccatcaaa 111
           ||| |||||| ||||
Sbjct: 329 caatctaccaacaaa 315

---

>gb|AY727481.1| Prunus hortulana PsbZ (psbZ) gene, complete cds; and tRNA-Gly
           (trnG) gene, complete sequence; chloroplast
          Length = 1009

 Score =  101 bits (51), Expect = 1e-18
 Identities = 69/75 (92%)
 Strand = Plus / Minus

                                                                       
Query: 37  gaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatttctaatcctc 96
           ||||| |||||||||||||||||||| |||||||||||| ||||||| ||||||||||||
Sbjct: 390 gaagtagcaattaatgcaaaaacagccaattggaaagcaatagtcatgtttctaatcctc 331

                          
Query: 97  caagctaccatcaaa 111
           ||| |||||| ||||
Sbjct: 330 caatctaccaacaaa 316

---

>emb|AJ627251.1| Nymphaea alba chloroplast, complete genome
          Length = 159930

 Score = 99.6 bits (50), Expect = 4e-18
 Identities = 92/105 (87%), Gaps = 1/105 (0%)
 Strand = Plus / Minus

                                                                         
Query: 1     caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
             ||||||||  |||||||||| || | ||||| ||| ||||| ||||||||||||||||||
Sbjct: 39565 caaatacaacgggtacacta-atcaataagattgatgaagtagcaattaatgcaaaaaca 39507

                                                          
Query: 61    gctaattggaaagcactagtcatatttctaatcctccaagctacc 105
             || |||||||||||| |||||||  || |||||||||||||||||
Sbjct: 39506 gccaattggaaagcaatagtcatggttgtaatcctccaagctacc 39462

---

>gb|AY642482.1| Paphiopedilum niveum tRNA-Ser (trnS) gene and trnS-trnfM intergenic
           spacer, partial sequence; chloroplast
          Length = 958

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 97/112 (86%), Gaps = 1/112 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
           ||||||||  |||||||||| || | ||||| | | ||||| ||||||||||||||||||
Sbjct: 399 caaatacaacgggtacacta-atcagtaagattaatgaagttgcaattaatgcaaaaaca 341

                                                               
Query: 61  gctaattggaaagcactagtcatatttctaatcctccaagctaccatcaaat 112
           ||||||||||||||| ||||||| ||| ||||||||||| ||| || |||||
Sbjct: 340 gctaattggaaagcaatagtcatgtttgtaatcctccaaactatcaacaaat 289

---

>gb|AY642479.1| Paphiopedilum supardii tRNA-Ser (trnS) gene and trnS-trnfM
           intergenic spacer, partial sequence; chloroplast
          Length = 986

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 97/112 (86%), Gaps = 1/112 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
           ||||||||  |||||||||| || | ||||| | | ||||| ||||||||||||||||||
Sbjct: 405 caaatacaacgggtacacta-atcagtaagattaatgaagttgcaattaatgcaaaaaca 347

                                                               
Query: 61  gctaattggaaagcactagtcatatttctaatcctccaagctaccatcaaat 112
           ||||||||||||||| ||||||| ||| ||||||||||| ||| || |||||
Sbjct: 346 gctaattggaaagcaatagtcatgtttgtaatcctccaaactatcaacaaat 295

---

>gb|AY642478.1| Paphiopedilum concolor tRNA-Ser (trnS) gene and trnS-trnfM
           intergenic spacer, partial sequence; chloroplast
          Length = 870

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 97/112 (86%), Gaps = 1/112 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
           ||||||||  |||||||||| || | ||||| | | ||||| ||||||||||||||||||
Sbjct: 313 caaatacaacgggtacacta-atcagtaagattaatgaagttgcaattaatgcaaaaaca 255

                                                               
Query: 61  gctaattggaaagcactagtcatatttctaatcctccaagctaccatcaaat 112
           ||||||||||||||| ||||||| ||| ||||||||||| ||| || |||||
Sbjct: 254 gctaattggaaagcaatagtcatgtttgtaatcctccaaactatcaacaaat 203

---

>gb|AY642477.1| Paphiopedilum hybrid cultivar tRNA-Ser (trnS) gene and trnS-trnfM
           intergenic spacer, partial sequence; chloroplast
          Length = 980

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 97/112 (86%), Gaps = 1/112 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
           ||||||||  |||||||||| || | ||||| | | ||||| ||||||||||||||||||
Sbjct: 399 caaatacaacgggtacacta-atcagtaagattaatgaagttgcaattaatgcaaaaaca 341

                                                               
Query: 61  gctaattggaaagcactagtcatatttctaatcctccaagctaccatcaaat 112
           ||||||||||||||| ||||||| ||| ||||||||||| ||| || |||||
Sbjct: 340 gctaattggaaagcaatagtcatgtttgtaatcctccaaactatcaacaaat 289

---

>gb|AY642476.1| Paphiopedilum philippinense tRNA-Ser (trnS) gene and trnS-trnfM
           intergenic spacer, partial sequence; chloroplast
          Length = 980

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 97/112 (86%), Gaps = 1/112 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
           ||||||||  |||||||||| || | ||||| | | ||||| ||||||||||||||||||
Sbjct: 399 caaatacaacgggtacacta-atcagtaagattaatgaagttgcaattaatgcaaaaaca 341

                                                               
Query: 61  gctaattggaaagcactagtcatatttctaatcctccaagctaccatcaaat 112
           ||||||||||||||| ||||||| ||| ||||||||||| ||| || |||||
Sbjct: 340 gctaattggaaagcaatagtcatgtttgtaatcctccaaactatcaacaaat 289

---

>gb|AY642475.1| Paphiopedilum lowii var. richardianum tRNA-Ser (trnS) gene and
           trnS-trnfM intergenic spacer, partial sequence;
           chloroplast
          Length = 978

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 97/112 (86%), Gaps = 1/112 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
           ||||||||  |||||||||| || | ||||| | | ||||| ||||||||||||||||||
Sbjct: 399 caaatacaacgggtacacta-atcagtaagattaatgaagttgcaattaatgcaaaaaca 341

                                                               
Query: 61  gctaattggaaagcactagtcatatttctaatcctccaagctaccatcaaat 112
           ||||||||||||||| ||||||| ||| ||||||||||| ||| || |||||
Sbjct: 340 gctaattggaaagcaatagtcatgtttgtaatcctccaaactatcaacaaat 289

---

>gb|AY642474.1| Paphiopedilum tonsum var. braemii tRNA-Ser (trnS) gene and
           trnS-trnfM intergenic spacer, partial sequence;
           chloroplast
          Length = 987

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 97/112 (86%), Gaps = 1/112 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
           ||||||||  |||||||||| || | ||||| | | ||||| ||||||||||||||||||
Sbjct: 399 caaatacaacgggtacacta-atcagtaagattaatgaagttgcaattaatgcaaaaaca 341

                                                               
Query: 61  gctaattggaaagcactagtcatatttctaatcctccaagctaccatcaaat 112
           ||||||||||||||| ||||||| ||| ||||||||||| ||| || |||||
Sbjct: 340 gctaattggaaagcaatagtcatgtttgtaatcctccaaactatcaacaaat 289

---

>gb|AY642473.1| Paphiopedilum insigne var. sanderae tRNA-Ser (trnS) gene and
           trnS-trnfM intergenic spacer, partial sequence;
           chloroplast
          Length = 987

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 97/112 (86%), Gaps = 1/112 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
           ||||||||  |||||||||| || | ||||| | | ||||| ||||||||||||||||||
Sbjct: 399 caaatacaacgggtacacta-atcagtaagattaatgaagttgcaattaatgcaaaaaca 341

                                                               
Query: 61  gctaattggaaagcactagtcatatttctaatcctccaagctaccatcaaat 112
           ||||||||||||||| ||||||| ||| ||||||||||| ||| || |||||
Sbjct: 340 gctaattggaaagcaatagtcatgtttgtaatcctccaaactatcaacaaat 289

---

>gb|AY642472.1| Paphiopedilum adductum tRNA-Ser (trnS) gene and trnS-trnfM
           intergenic spacer, partial sequence; chloroplast
          Length = 984

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 97/112 (86%), Gaps = 1/112 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
           ||||||||  |||||||||| || | ||||| | | ||||| ||||||||||||||||||
Sbjct: 399 caaatacaacgggtacacta-atcagtaagattaatgaagttgcaattaatgcaaaaaca 341

                                                               
Query: 61  gctaattggaaagcactagtcatatttctaatcctccaagctaccatcaaat 112
           ||||||||||||||| ||||||| ||| ||||||||||| ||| || |||||
Sbjct: 340 gctaattggaaagcaatagtcatgtttgtaatcctccaaactatcaacaaat 289

---

>gb|AY642471.1| Paphiopedilum insigne tRNA-Ser (trnS) gene and trnS-trnfM
           intergenic spacer, partial sequence; chloroplast
          Length = 987

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 97/112 (86%), Gaps = 1/112 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
           ||||||||  |||||||||| || | ||||| | | ||||| ||||||||||||||||||
Sbjct: 399 caaatacaacgggtacacta-atcagtaagattaatgaagttgcaattaatgcaaaaaca 341

                                                               
Query: 61  gctaattggaaagcactagtcatatttctaatcctccaagctaccatcaaat 112
           ||||||||||||||| ||||||| ||| ||||||||||| ||| || |||||
Sbjct: 340 gctaattggaaagcaatagtcatgtttgtaatcctccaaactatcaacaaat 289

---

>gb|AY642470.1| Paphiopedilum glaucophyllum tRNA-Ser (trnS) gene and trnS-trnfM
           intergenic spacer, partial sequence; chloroplast
          Length = 987

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 97/112 (86%), Gaps = 1/112 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
           ||||||||  |||||||||| || | ||||| | | ||||| ||||||||||||||||||
Sbjct: 399 caaatacaacgggtacacta-atcagtaagattaatgaagttgcaattaatgcaaaaaca 341

                                                               
Query: 61  gctaattggaaagcactagtcatatttctaatcctccaagctaccatcaaat 112
           ||||||||||||||| ||||||| ||| ||||||||||| ||| || |||||
Sbjct: 340 gctaattggaaagcaatagtcatgtttgtaatcctccaaactatcaacaaat 289

---

>emb|AJ970307.1| Cucumis sativus chloroplast complete genome
          Length = 155293

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 76/85 (89%)
 Strand = Plus / Minus

                                                                         
Query: 27    taagactgaggaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatt 86
             ||||| ||| |||||  ||||||||||||||||||| |||||||||||| ||||||| ||
Sbjct: 37967 taagattgatgaagtaacaattaatgcaaaaacagccaattggaaagcaatagtcatgtt 37908

                                      
Query: 87    tctaatcctccaagctaccatcaaa 111
             ||||||||||||| |||||| ||||
Sbjct: 37907 tctaatcctccaatctaccaacaaa 37883

---

>emb|AJ506156.2|ATR506156 Amborella trichopoda chloroplast genomic DNA, complete sequence
          Length = 162686

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 97/112 (86%), Gaps = 1/112 (0%)
 Strand = Plus / Minus

                                                                         
Query: 1     caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
             ||||||||  |||||||||| || | ||||| ||| ||||| ||||||||||||||||||
Sbjct: 40984 caaatacaacgggtacacta-atcagtaagattgatgaagtagcaattaatgcaaaaaca 40926

                                                                 
Query: 61    gctaattggaaagcactagtcatatttctaatcctccaagctaccatcaaat 112
             || |||||||||||| |||||||  || ||||||||||||||| || |||||
Sbjct: 40925 gccaattggaaagcaatagtcatggttgtaatcctccaagctatcaacaaat 40874

---

>gb|AY727486.1| Magnolia tripetala PsbZ (psbZ) gene, complete cds; and tRNA-Gly
           (trnG) gene, complete sequence; chloroplast
          Length = 1055

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 97/112 (86%), Gaps = 1/112 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
           ||||||||  |||||||||| || | ||||| ||| ||||| ||||||||||||||||||
Sbjct: 420 caaatacaacgggtacacta-atcagtaagattgatgaagtagcaattaatgcaaaaaca 362

                                                               
Query: 61  gctaattggaaagcactagtcatatttctaatcctccaagctaccatcaaat 112
           || |||||||||||| |||||||  || ||||||||||| |||||| |||||
Sbjct: 361 gccaattggaaagcaatagtcatgcttgtaatcctccaaactaccaacaaat 310

---

>gb|AY727485.1| Liriodendron tulipifera PsbZ (psbZ) gene, complete cds; and
           tRNA-Gly (trnG) gene, complete sequence; chloroplast
          Length = 1044

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 97/112 (86%), Gaps = 1/112 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
           ||||||||  |||||||||| || | ||||| ||| ||||| ||||||||||||||||||
Sbjct: 405 caaatacaacgggtacacta-atcagtaagattgatgaagtagcaattaatgcaaaaaca 347

                                                               
Query: 61  gctaattggaaagcactagtcatatttctaatcctccaagctaccatcaaat 112
           || |||||||||||| |||||||  || ||||||||||| |||||| |||||
Sbjct: 346 gccaattggaaagcaatagtcatgcttgtaatcctccaaactaccaacaaat 295

---

>gb|AY727484.1| Magnolia acuminata PsbZ (psbZ) gene, complete cds; and tRNA-Gly
           (trnG) gene, complete sequence; chloroplast
          Length = 1055

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 97/112 (86%), Gaps = 1/112 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
           ||||||||  |||||||||| || | ||||| ||| ||||| ||||||||||||||||||
Sbjct: 420 caaatacaacgggtacacta-atcagtaagattgatgaagtagcaattaatgcaaaaaca 362

                                                               
Query: 61  gctaattggaaagcactagtcatatttctaatcctccaagctaccatcaaat 112
           || |||||||||||| |||||||  || ||||||||||| |||||| |||||
Sbjct: 361 gccaattggaaagcaatagtcatgcttgtaatcctccaaactaccaacaaat 310

---

>gb|DQ119058.1| Cucumis sativus cultivar Baekmibaekdadagi plastid, complete genome
          Length = 155527

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 76/85 (89%)
 Strand = Plus / Minus

                                                                         
Query: 27    taagactgaggaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatt 86
             ||||| ||| |||||  ||||||||||||||||||| |||||||||||| ||||||| ||
Sbjct: 37950 taagattgatgaagtaacaattaatgcaaaaacagccaattggaaagcaatagtcatgtt 37891

                                      
Query: 87    tctaatcctccaagctaccatcaaa 111
             ||||||||||||| |||||| ||||
Sbjct: 37890 tctaatcctccaatctaccaacaaa 37866

---

>gb|DQ317523.1| Glycine max cultivar PI 437654 chloroplast, complete genome
          Length = 152218

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 55/57 (96%)
 Strand = Plus / Plus

                                                                      
Query: 43    gcaattaatgcaaaaacagctaattggaaagcactagtcatatttctaatcctccaa 99
             ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 24990 gcaattaatgcaaaaacagctaattggaaagcaatagtcatgtttctaatcctccaa 25046

---

>gb|AY642480.1| Paphiopedilum lowii tRNA-Ser (trnS) gene and trnS-trnfM intergenic
           spacer, partial sequence; chloroplast
          Length = 974

 Score = 95.6 bits (48), Expect = 6e-17
 Identities = 69/76 (90%)
 Strand = Plus / Minus

                                                                       
Query: 37  gaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatttctaatcctc 96
           ||||| ||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||
Sbjct: 364 gaagttgcaattaatgcaaaaacagctaattggaaagcaatagtcatgtttgtaatcctc 305

                           
Query: 97  caagctaccatcaaat 112
           ||| ||| || |||||
Sbjct: 304 caaactatcaacaaat 289

---

>gb|AY293379.1| Juglans australis chloroplast trnS-trnfM intergenic spacer, partial
           sequence
          Length = 559

 Score = 95.6 bits (48), Expect = 6e-17
 Identities = 87/99 (87%), Gaps = 1/99 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
           ||||||||  |||||||||| || | ||||| ||| ||||| |||||||| |||||||||
Sbjct: 515 caaatacaacgggtacacta-atcagtaagattgatgaagtagcaattaacgcaaaaaca 457

                                                  
Query: 61  gctaattggaaagcactagtcatatttctaatcctccaa 99
           || |||||||||||| ||||||| |||||||||||||||
Sbjct: 456 gccaattggaaagcaatagtcatgtttctaatcctccaa 418

---

>gb|AY293377.1| Juglans californica chloroplast trnS-trnfM intergenic spacer,
           partial sequence
          Length = 559

 Score = 95.6 bits (48), Expect = 6e-17
 Identities = 87/99 (87%), Gaps = 1/99 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
           ||||||||  |||||||||| || | ||||| ||| ||||| |||||||| |||||||||
Sbjct: 515 caaatacaacgggtacacta-atcagtaagattgatgaagtagcaattaacgcaaaaaca 457

                                                  
Query: 61  gctaattggaaagcactagtcatatttctaatcctccaa 99
           || |||||||||||| ||||||| |||||||||||||||
Sbjct: 456 gccaattggaaagcaatagtcatgtttctaatcctccaa 418

---

>gb|AY293376.1| Juglans cinerea chloroplast trnS-trnfM intergenic spacer, partial
           sequence
          Length = 559

 Score = 95.6 bits (48), Expect = 6e-17
 Identities = 87/99 (87%), Gaps = 1/99 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
           ||||||||  |||||||||| || | ||||| ||| ||||| |||||||| |||||||||
Sbjct: 515 caaatacaacgggtacacta-atcagtaagattgatgaagtagcaattaacgcaaaaaca 457

                                                  
Query: 61  gctaattggaaagcactagtcatatttctaatcctccaa 99
           || |||||||||||| ||||||| |||||||||||||||
Sbjct: 456 gccaattggaaagcaatagtcatgtttctaatcctccaa 418

---

>gb|AY293375.1| Juglans mollis chloroplast trnS-trnfM intergenic spacer, partial
           sequence
          Length = 559

 Score = 95.6 bits (48), Expect = 6e-17
 Identities = 87/99 (87%), Gaps = 1/99 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
           ||||||||  |||||||||| || | ||||| ||| ||||| |||||||| |||||||||
Sbjct: 515 caaatacaacgggtacacta-atcagtaagattgatgaagtagcaattaacgcaaaaaca 457

                                                  
Query: 61  gctaattggaaagcactagtcatatttctaatcctccaa 99
           || |||||||||||| ||||||| |||||||||||||||
Sbjct: 456 gccaattggaaagcaatagtcatgtttctaatcctccaa 418

---

>gb|AY293374.1| Juglans guatemalensis chloroplast trnS-trnfM intergenic spacer,
           partial sequence
          Length = 559

 Score = 95.6 bits (48), Expect = 6e-17
 Identities = 87/99 (87%), Gaps = 1/99 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
           ||||||||  |||||||||| || | ||||| ||| ||||| |||||||| |||||||||
Sbjct: 515 caaatacaacgggtacacta-atcagtaagattgatgaagtagcaattaacgcaaaaaca 457

                                                  
Query: 61  gctaattggaaagcactagtcatatttctaatcctccaa 99
           || |||||||||||| ||||||| |||||||||||||||
Sbjct: 456 gccaattggaaagcaatagtcatgtttctaatcctccaa 418

---

>gb|AY293373.1| Juglans hindsii chloroplast trnS-trnfM intergenic spacer, partial
           sequence
          Length = 559

 Score = 95.6 bits (48), Expect = 6e-17
 Identities = 87/99 (87%), Gaps = 1/99 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
           ||||||||  |||||||||| || | ||||| ||| ||||| |||||||| |||||||||
Sbjct: 515 caaatacaacgggtacacta-atcagtaagattgatgaagtagcaattaacgcaaaaaca 457

                                                  
Query: 61  gctaattggaaagcactagtcatatttctaatcctccaa 99
           || |||||||||||| ||||||| |||||||||||||||
Sbjct: 456 gccaattggaaagcaatagtcatgtttctaatcctccaa 418

---

>gb|AY293372.1| Juglans microcarpa chloroplast trnS-trnfM intergenic spacer,
           partial sequence
          Length = 559

 Score = 95.6 bits (48), Expect = 6e-17
 Identities = 87/99 (87%), Gaps = 1/99 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
           ||||||||  |||||||||| || | ||||| ||| ||||| |||||||| |||||||||
Sbjct: 515 caaatacaacgggtacacta-atcagtaagattgatgaagtagcaattaacgcaaaaaca 457

                                                  
Query: 61  gctaattggaaagcactagtcatatttctaatcctccaa 99
           || |||||||||||| ||||||| |||||||||||||||
Sbjct: 456 gccaattggaaagcaatagtcatgtttctaatcctccaa 418

---

>gb|AY293370.1| Juglans sigillata chloroplast trnS-trnfM intergenic spacer, partial
           sequence
          Length = 559

 Score = 95.6 bits (48), Expect = 6e-17
 Identities = 87/99 (87%), Gaps = 1/99 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
           ||||||||  |||||||||| || | ||||| ||| ||||| |||||||| |||||||||
Sbjct: 515 caaatacaacgggtacacta-atcagtaagattgatgaagtagcaattaacgcaaaaaca 457

                                                  
Query: 61  gctaattggaaagcactagtcatatttctaatcctccaa 99
           || |||||||||||| ||||||| |||||||||||||||
Sbjct: 456 gccaattggaaagcaatagtcatgtttctaatcctccaa 418

---

>gb|AY293369.1| Juglans regia chloroplast trnS-trnfM intergenic spacer, partial
           sequence
          Length = 559

 Score = 95.6 bits (48), Expect = 6e-17
 Identities = 87/99 (87%), Gaps = 1/99 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
           ||||||||  |||||||||| || | ||||| ||| ||||| |||||||| |||||||||
Sbjct: 515 caaatacaacgggtacacta-atcagtaagattgatgaagtagcaattaacgcaaaaaca 457

                                                  
Query: 61  gctaattggaaagcactagtcatatttctaatcctccaa 99
           || |||||||||||| ||||||| |||||||||||||||
Sbjct: 456 gccaattggaaagcaatagtcatgtttctaatcctccaa 418

---

>gb|AY293365.1| Juglans ailanthifolia chloroplast trnS-trnfM intergenic spacer,
           partial sequence
          Length = 559

 Score = 95.6 bits (48), Expect = 6e-17
 Identities = 87/99 (87%), Gaps = 1/99 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
           ||||||||  |||||||||| || | ||||| ||| ||||| |||||||| |||||||||
Sbjct: 515 caaatacaacgggtacacta-atcagtaagattgatgaagtagcaattaacgcaaaaaca 457

                                                  
Query: 61  gctaattggaaagcactagtcatatttctaatcctccaa 99
           || |||||||||||| ||||||| |||||||||||||||
Sbjct: 456 gccaattggaaagcaatagtcatgtttctaatcctccaa 418

---

>gb|DQ069354.1| Yucca schidigera photosystem II reaction center Z protein (psbZ)
          gene, partial cds; chloroplast
          Length = 186

 Score = 95.6 bits (48), Expect = 6e-17
 Identities = 75/83 (90%), Gaps = 1/83 (1%)
 Strand = Plus / Minus

                                                                      
Query: 1  caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
          ||||||||  |||||||||| || | ||||| ||| ||||||||||||||||||||||||
Sbjct: 82 caaatacaacgggtacacta-atcagtaagattgatgaagtcgcaattaatgcaaaaaca 24

                                 
Query: 61 gctaattggaaagcactagtcat 83
          ||||||||||||||| |||||||
Sbjct: 23 gctaattggaaagcaatagtcat 1

---

>gb|AY780259.1| Eucalyptus globulus subsp. globulus chloroplast, complete genome
          Length = 160286

 Score = 95.6 bits (48), Expect = 6e-17
 Identities = 96/111 (86%), Gaps = 1/111 (0%)
 Strand = Plus / Minus

                                                                         
Query: 1     caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
             ||||||||  |||||||||| || | ||||| | | ||||| ||||||||||||||||||
Sbjct: 39183 caaatacaacgggtacacta-atcagtaagattaatgaagtagcaattaatgcaaaaaca 39125

                                                                
Query: 61    gctaattggaaagcactagtcatatttctaatcctccaagctaccatcaaa 111
             || |||||||||||| ||||||| ||||||||||||||  |||||| ||||
Sbjct: 39124 gccaattggaaagcaatagtcatgtttctaatcctccactctaccaacaaa 39074

---

>gb|AY337662.1| Carludovica palmata isolate Sp_20 chloroplast trnS-ycf9 intergenic
           spacer, complete sequence
          Length = 473

 Score = 93.7 bits (47), Expect = 2e-16
 Identities = 63/69 (91%)
 Strand = Plus / Minus

                                                                       
Query: 37  gaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatttctaatcctc 96
           ||||||||||||||||| ||| |||||||||| |||||| ||||||| ||| ||||||||
Sbjct: 382 gaagtcgcaattaatgcnaaancagctaattgaaaagcaatagtcatgtttgtaatcctc 323

                    
Query: 97  caagctacc 105
           |||||||||
Sbjct: 322 caagctacc 314

---

>gb|AY337649.1| Pandanus odoratissimus isolate Sp_7 chloroplast trnS-ycf9
           intergenic spacer, complete sequence
          Length = 496

 Score = 93.7 bits (47), Expect = 2e-16
 Identities = 71/80 (88%)
 Strand = Plus / Minus

                                                                       
Query: 27  taagactgaggaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatt 86
           ||||| ||| |||||||| |||||  ||||||||||||||||||||||| ||||||| | 
Sbjct: 417 taagattgatgaagtcgcnattaaancaaaaacagctaattggaaagcaatagtcatgtn 358

                               
Query: 87  tctaatcctccaagctacca 106
           | ||||||||||||||||||
Sbjct: 357 tgtaatcctccaagctacca 338



 Score = 42.1 bits (21), Expect = 0.81
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 180 tttaatcatgaatccattgattctt 204
           |||||||||||||| ||||||||||
Sbjct: 284 tttaatcatgaatcaattgattctt 260

---

>gb|AY582139.1| Panax ginseng chloroplast, complete genome
          Length = 156318

 Score = 93.7 bits (47), Expect = 2e-16
 Identities = 80/91 (87%)
 Strand = Plus / Minus

                                                                         
Query: 22    attactaagactgaggaagtcgcaattaatgcaaaaacagctaattggaaagcactagtc 81
             |||| ||||| ||| || || |||||||||||||||||||||||||||||||||  ||||
Sbjct: 38011 attaataagattgatgacgtagcaattaatgcaaaaacagctaattggaaagcaagagtc 37952

                                            
Query: 82    atatttctaatcctccaagctaccatcaaat 112
             ||  || |||||||||||||||||| |||||
Sbjct: 37951 atgcttttaatcctccaagctaccaacaaat 37921

---

>dbj|AP002983.1| Lotus japonicus chloroplast DNA, complete genome
          Length = 150519

 Score = 93.7 bits (47), Expect = 2e-16
 Identities = 59/63 (93%)
 Strand = Plus / Plus

                                                                         
Query: 37    gaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatttctaatcctc 96
             ||||| ||||||||||||||||||||||||||||||||  ||||||| ||||||||||||
Sbjct: 25300 gaagtagcaattaatgcaaaaacagctaattggaaagcgatagtcatctttctaatcctc 25359

                
Query: 97    caa 99
             |||
Sbjct: 25360 caa 25362

---

>gb|AY337660.1| Sararanga sinuosa isolate Sp_18 chloroplast trnS-ycf9 intergenic
           spacer, complete sequence
          Length = 502

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 62/66 (93%), Gaps = 1/66 (1%)
 Strand = Plus / Minus

                                                                       
Query: 37  gaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatttctaatcctc 96
           ||||||||||||||||||||||||||||||||||||||| ||||||| ||| | ||||||
Sbjct: 412 gaagtcgcaattaatgcaaaaacagctaattggaaagcaatagtcatgtttgt-atcctc 354

                 
Query: 97  caagct 102
           ||||||
Sbjct: 353 caagct 348



 Score = 42.1 bits (21), Expect = 0.81
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 180 tttaatcatgaatccattgattctt 204
           |||||||||||||| ||||||||||
Sbjct: 280 tttaatcatgaatcaattgattctt 256

---

>gb|AY337647.1| Martellidendron gallinarum isolate Sp_5 chloroplast trnS-ycf9
           intergenic spacer, complete sequence
          Length = 506

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 78/86 (90%), Gaps = 2/86 (2%)
 Strand = Plus / Minus

                                                                       
Query: 27  taagactgaggaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatt 86
           ||||| ||| ||||||||||||||||||||||||||||||| ||||||| ||||||| ||
Sbjct: 425 taagattgatgaagtcgcaattaatgcaaaaacagctaatt-gaaagcaatagtcatgtt 367

                                     
Query: 87  tctaatcctccaagctaccatcaaat 112
           | | |||||||||||||||| |||||
Sbjct: 366 tgt-atcctccaagctaccaacaaat 342



 Score = 42.1 bits (21), Expect = 0.81
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 180 tttaatcatgaatccattgattctt 204
           |||||||||||||| ||||||||||
Sbjct: 285 tttaatcatgaatcaattgattctt 261

---

>gb|DQ383816.1| Lactuca sativa cultivar Salinas chloroplast, complete genome
          Length = 152772

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 76/86 (88%)
 Strand = Plus / Minus

                                                                         
Query: 27    taagactgaggaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatt 86
             ||||| ||| ||||| |||||||||||||||||||| ||||||||||||  ||||||  |
Sbjct: 35597 taagattgatgaagtagcaattaatgcaaaaacagccaattggaaagcaagagtcatgct 35538

                                       
Query: 87    tctaatcctccaagctaccatcaaat 112
             | |||||||||||||||||| |||||
Sbjct: 35537 tttaatcctccaagctaccaacaaat 35512

---

>gb|DQ383815.1| Helianthus annuus cultivar line HA383 chloroplast, complete genome
          Length = 151104

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 76/86 (88%)
 Strand = Plus / Minus

                                                                         
Query: 27    taagactgaggaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatt 86
             ||||| ||| ||||| |||||||||||||||||||| ||||||||||||  ||||||  |
Sbjct: 35657 taagattgatgaagtagcaattaatgcaaaaacagccaattggaaagcaagagtcatgct 35598

                                       
Query: 87    tctaatcctccaagctaccatcaaat 112
             | |||||||||||||||||| |||||
Sbjct: 35597 tttaatcctccaagctaccaacaaat 35572

---

>gb|AY316647.1| Centaurea vallesiaca tRNA-Ser (trnS), and ycf9 genes, partial
           sequence; chloroplast genes for chloroplast products
          Length = 1126

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 76/86 (88%)
 Strand = Plus / Minus

                                                                       
Query: 27  taagactgaggaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatt 86
           ||||| ||| ||||| |||||||||||||||||||| ||||||||||||  ||||||  |
Sbjct: 428 taagattgatgaagtagcaattaatgcaaaaacagccaattggaaagcaagagtcatgct 369

                                     
Query: 87  tctaatcctccaagctaccatcaaat 112
           | |||||||||||||||||| |||||
Sbjct: 368 tttaatcctccaagctaccaacaaat 343

---

>gb|AY316646.1| Centaurea maculosa tRNA-Ser (trnS), and ycf9 genes, partial
           sequence; chloroplast genes for chloroplast products
          Length = 1126

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 76/86 (88%)
 Strand = Plus / Minus

                                                                       
Query: 27  taagactgaggaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatt 86
           ||||| ||| ||||| |||||||||||||||||||| ||||||||||||  ||||||  |
Sbjct: 428 taagattgatgaagtagcaattaatgcaaaaacagccaattggaaagcaagagtcatgct 369

                                     
Query: 87  tctaatcctccaagctaccatcaaat 112
           | |||||||||||||||||| |||||
Sbjct: 368 tttaatcctccaagctaccaacaaat 343

---

>gb|AY316645.1| Centaurea maculosa tRNA-Ser (trnS), and ycf9 genes, partial
           sequence; chloroplast genes for chloroplast products
          Length = 1126

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 76/86 (88%)
 Strand = Plus / Minus

                                                                       
Query: 27  taagactgaggaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatt 86
           ||||| ||| ||||| |||||||||||||||||||| ||||||||||||  ||||||  |
Sbjct: 428 taagattgatgaagtagcaattaatgcaaaaacagccaattggaaagcaagagtcatgct 369

                                     
Query: 87  tctaatcctccaagctaccatcaaat 112
           | |||||||||||||||||| |||||
Sbjct: 368 tttaatcctccaagctaccaacaaat 343

---

>gb|AY316644.1| Centaurea diffusa tRNA-Ser (trnS), and ycf9 genes, partial
           sequence; chloroplast genes for chloroplast products
          Length = 1126

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 76/86 (88%)
 Strand = Plus / Minus

                                                                       
Query: 27  taagactgaggaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatt 86
           ||||| ||| ||||| |||||||||||||||||||| ||||||||||||  ||||||  |
Sbjct: 428 taagattgatgaagtagcaattaatgcaaaaacagccaattggaaagcaagagtcatgct 369

                                     
Query: 87  tctaatcctccaagctaccatcaaat 112
           | |||||||||||||||||| |||||
Sbjct: 368 tttaatcctccaagctaccaacaaat 343

---

>gb|AY316643.1| Centaurea diffusa tRNA-Ser (trnS), and ycf9 genes, partial
           sequence; chloroplast genes for chloroplast products
          Length = 1126

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 76/86 (88%)
 Strand = Plus / Minus

                                                                       
Query: 27  taagactgaggaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatt 86
           ||||| ||| ||||| |||||||||||||||||||| ||||||||||||  ||||||  |
Sbjct: 428 taagattgatgaagtagcaattaatgcaaaaacagccaattggaaagcaagagtcatgct 369

                                     
Query: 87  tctaatcctccaagctaccatcaaat 112
           | |||||||||||||||||| |||||
Sbjct: 368 tttaatcctccaagctaccaacaaat 343

---

>gb|AY316642.1| Centaurea maculosa tRNA-Ser (trnS), and ycf9 genes, partial
           sequence; chloroplast genes for chloroplast products
          Length = 1126

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 76/86 (88%)
 Strand = Plus / Minus

                                                                       
Query: 27  taagactgaggaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatt 86
           ||||| ||| ||||| |||||||||||||||||||| ||||||||||||  ||||||  |
Sbjct: 428 taagattgatgaagtagcaattaatgcaaaaacagccaattggaaagcaagagtcatgct 369

                                     
Query: 87  tctaatcctccaagctaccatcaaat 112
           | |||||||||||||||||| |||||
Sbjct: 368 tttaatcctccaagctaccaacaaat 343

---

>gb|AY316641.1| Centaurea maculosa tRNA-Ser (trnS), and ycf9 genes, partial
           sequence; chloroplast genes for chloroplast products
          Length = 1126

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 76/86 (88%)
 Strand = Plus / Minus

                                                                       
Query: 27  taagactgaggaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatt 86
           ||||| ||| ||||| |||||||||||||||||||| ||||||||||||  ||||||  |
Sbjct: 428 taagattgatgaagtagcaattaatgcaaaaacagccaattggaaagcaagagtcatgct 369

                                     
Query: 87  tctaatcctccaagctaccatcaaat 112
           | |||||||||||||||||| |||||
Sbjct: 368 tttaatcctccaagctaccaacaaat 343

---

>gb|AY316640.1| Centaurea diffusa tRNA-Ser (trnS), and ycf9 genes, partial
           sequence; chloroplast genes for chloroplast products
          Length = 1126

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 76/86 (88%)
 Strand = Plus / Minus

                                                                       
Query: 27  taagactgaggaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatt 86
           ||||| ||| ||||| |||||||||||||||||||| ||||||||||||  ||||||  |
Sbjct: 428 taagattgatgaagtagcaattaatgcaaaaacagccaattggaaagcaagagtcatgct 369

                                     
Query: 87  tctaatcctccaagctaccatcaaat 112
           | |||||||||||||||||| |||||
Sbjct: 368 tttaatcctccaagctaccaacaaat 343

---

>gb|AY316639.1| Centaurea maculosa tRNA-Ser (trnS), and ycf9 genes, partial
           sequence; chloroplast genes for chloroplast products
          Length = 1125

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 76/86 (88%)
 Strand = Plus / Minus

                                                                       
Query: 27  taagactgaggaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatt 86
           ||||| ||| ||||| |||||||||||||||||||| ||||||||||||  ||||||  |
Sbjct: 428 taagattgatgaagtagcaattaatgcaaaaacagccaattggaaagcaagagtcatgct 369

                                     
Query: 87  tctaatcctccaagctaccatcaaat 112
           | |||||||||||||||||| |||||
Sbjct: 368 tttaatcctccaagctaccaacaaat 343

---

>gb|AY316638.1| Centaurea diffusa tRNA-Ser (trnS), and ycf9 genes, partial
           sequence; chloroplast genes for chloroplast products
          Length = 1126

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 76/86 (88%)
 Strand = Plus / Minus

                                                                       
Query: 27  taagactgaggaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatt 86
           ||||| ||| ||||| |||||||||||||||||||| ||||||||||||  ||||||  |
Sbjct: 428 taagattgatgaagtagcaattaatgcaaaaacagccaattggaaagcaagagtcatgct 369

                                     
Query: 87  tctaatcctccaagctaccatcaaat 112
           | |||||||||||||||||| |||||
Sbjct: 368 tttaatcctccaagctaccaacaaat 343

---

>gb|AY316637.1| Centaurea maculosa tRNA-Ser (trnS), and ycf9 genes, partial
           sequence; chloroplast genes for chloroplast products
          Length = 1126

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 76/86 (88%)
 Strand = Plus / Minus

                                                                       
Query: 27  taagactgaggaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatt 86
           ||||| ||| ||||| |||||||||||||||||||| ||||||||||||  ||||||  |
Sbjct: 428 taagattgatgaagtagcaattaatgcaaaaacagccaattggaaagcaagagtcatgct 369

                                     
Query: 87  tctaatcctccaagctaccatcaaat 112
           | |||||||||||||||||| |||||
Sbjct: 368 tttaatcctccaagctaccaacaaat 343

---

>gb|AY316636.1| Centaurea maculosa tRNA-Ser (trnS), and ycf9 genes, partial
           sequence; chloroplast genes for chloroplast products
          Length = 1126

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 76/86 (88%)
 Strand = Plus / Minus

                                                                       
Query: 27  taagactgaggaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatt 86
           ||||| ||| ||||| |||||||||||||||||||| ||||||||||||  ||||||  |
Sbjct: 428 taagattgatgaagtagcaattaatgcaaaaacagccaattggaaagcaagagtcatgct 369

                                     
Query: 87  tctaatcctccaagctaccatcaaat 112
           | |||||||||||||||||| |||||
Sbjct: 368 tttaatcctccaagctaccaacaaat 343

---

>gb|AY316635.1| Centaurea diffusa tRNA-Ser (trnS), and ycf9 genes, partial
           sequence; chloroplast genes for chloroplast products
          Length = 1126

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 76/86 (88%)
 Strand = Plus / Minus

                                                                       
Query: 27  taagactgaggaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatt 86
           ||||| ||| ||||| |||||||||||||||||||| ||||||||||||  ||||||  |
Sbjct: 428 taagattgatgaagtagcaattaatgcaaaaacagccaattggaaagcaagagtcatgct 369

                                     
Query: 87  tctaatcctccaagctaccatcaaat 112
           | |||||||||||||||||| |||||
Sbjct: 368 tttaatcctccaagctaccaacaaat 343

---

>gb|AY316634.1| Centaurea diffusa tRNA-Ser (trnS), and ycf9 genes, partial
           sequence; chloroplast genes for chloroplast products
          Length = 1125

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 76/86 (88%)
 Strand = Plus / Minus

                                                                       
Query: 27  taagactgaggaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatt 86
           ||||| ||| ||||| |||||||||||||||||||| ||||||||||||  ||||||  |
Sbjct: 428 taagattgatgaagtagcaattaatgcaaaaacagccaattggaaagcaagagtcatgct 369

                                     
Query: 87  tctaatcctccaagctaccatcaaat 112
           | |||||||||||||||||| |||||
Sbjct: 368 tttaatcctccaagctaccaacaaat 343

---

>gb|DQ384533.1| Panax ginseng clone PG6L-10 Ycf9 mRNA, complete cds
          Length = 520

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 64/70 (91%)
 Strand = Plus / Minus

                                                                       
Query: 43  gcaattaatgcaaaaacagctaattggaaagcactagtcatatttctaatcctccaagct 102
           |||||||||||||||||||||||||||||||||  ||||||  || ||||||||||||||
Sbjct: 263 gcaattaatgcaaaaacagctaattggaaagcaagagtcatgcttttaatcctccaagct 204

                     
Query: 103 accatcaaat 112
           |||| |||||
Sbjct: 203 accaacaaat 194

---

>gb|AY727503.1| Eupatorium rotundifolium PsbZ (psbZ) gene, complete cds; and
           tRNA-Gly (trnG) gene, complete sequence; chloroplast
          Length = 1112

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 76/86 (88%)
 Strand = Plus / Minus

                                                                       
Query: 27  taagactgaggaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatt 86
           ||||| ||| ||||| |||||||||||||||||||| ||||||||||||  ||||||  |
Sbjct: 406 taagattgatgaagtagcaattaatgcaaaaacagccaattggaaagcaagagtcatgct 347

                                     
Query: 87  tctaatcctccaagctaccatcaaat 112
           | |||||||||||||||||| |||||
Sbjct: 346 tttaatcctccaagctaccaacaaat 321

---

>gb|AY727502.1| Eupatorium capillifolium PsbZ (psbZ) gene, complete cds; and
           tRNA-Gly (trnG) gene, complete sequence; chloroplast
          Length = 1103

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 76/86 (88%)
 Strand = Plus / Minus

                                                                       
Query: 27  taagactgaggaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatt 86
           ||||| ||| ||||| |||||||||||||||||||| ||||||||||||  ||||||  |
Sbjct: 406 taagattgatgaagtagcaattaatgcaaaaacagccaattggaaagcaagagtcatgct 347

                                     
Query: 87  tctaatcctccaagctaccatcaaat 112
           | |||||||||||||||||| |||||
Sbjct: 346 tttaatcctccaagctaccaacaaat 321

---

>gb|AY727501.1| Eupatorium hyssopifolium PsbZ (psbZ) gene, complete cds; and
           tRNA-Gly (trnG) gene, complete sequence; chloroplast
          Length = 1102

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 76/86 (88%)
 Strand = Plus / Minus

                                                                       
Query: 27  taagactgaggaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatt 86
           ||||| ||| ||||| |||||||||||||||||||| ||||||||||||  ||||||  |
Sbjct: 406 taagattgatgaagtagcaattaatgcaaaaacagccaattggaaagcaagagtcatgct 347

                                     
Query: 87  tctaatcctccaagctaccatcaaat 112
           | |||||||||||||||||| |||||
Sbjct: 346 tttaatcctccaagctaccaacaaat 321

---

>gb|AY727500.1| Carphephorus corymbosus PsbZ (psbZ) gene, complete cds; and
           tRNA-Gly (trnG) gene, complete sequence; chloroplast
          Length = 1093

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 76/86 (88%)
 Strand = Plus / Minus

                                                                       
Query: 27  taagactgaggaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatt 86
           ||||| ||| ||||| |||||||||||||||||||| ||||||||||||  ||||||  |
Sbjct: 394 taagattgatgaagtagcaattaatgcaaaaacagccaattggaaagcaagagtcatgct 335

                                     
Query: 87  tctaatcctccaagctaccatcaaat 112
           | |||||||||||||||||| |||||
Sbjct: 334 tttaatcctccaagctaccaacaaat 309

---

>dbj|AP007232.1| Lactuca sativa chloroplast DNA, complete genome
          Length = 152765

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 76/86 (88%)
 Strand = Plus / Minus

                                                                         
Query: 27    taagactgaggaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatt 86
             ||||| ||| ||||| |||||||||||||||||||| ||||||||||||  ||||||  |
Sbjct: 35596 taagattgatgaagtagcaattaatgcaaaaacagccaattggaaagcaagagtcatgct 35537

                                       
Query: 87    tctaatcctccaagctaccatcaaat 112
             | |||||||||||||||||| |||||
Sbjct: 35536 tttaatcctccaagctaccaacaaat 35511

---

>gb|AY293381.1| Pterocarya stenoptera chloroplast trnS-trnfM intergenic spacer,
           partial sequence
          Length = 571

 Score = 89.7 bits (45), Expect = 4e-15
 Identities = 66/73 (90%)
 Strand = Plus / Minus

                                                                       
Query: 27  taagactgaggaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatt 86
           ||||| ||| ||||| |||||||| ||||||||||| |||||||||||| ||||||| ||
Sbjct: 501 taagattgatgaagtagcaattaacgcaaaaacagccaattggaaagcaatagtcatgtt 442

                        
Query: 87  tctaatcctccaa 99
           |||||||||||||
Sbjct: 441 tctaatcctccaa 429

---

>gb|AY293380.1| Juglans olanchana chloroplast trnS-trnfM intergenic spacer, partial
           sequence
          Length = 558

 Score = 89.7 bits (45), Expect = 4e-15
 Identities = 66/73 (90%)
 Strand = Plus / Minus

                                                                       
Query: 27  taagactgaggaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatt 86
           ||||| ||| ||||| |||||||| ||||||||||| |||||||||||| ||||||| ||
Sbjct: 489 taagattgatgaagtagcaattaacgcaaaaacagccaattggaaagcaatagtcatgtt 430

                        
Query: 87  tctaatcctccaa 99
           |||||||||||||
Sbjct: 429 tctaatcctccaa 417

---

>gb|AY293378.1| Juglans major chloroplast trnS-trnfM intergenic spacer, partial
           sequence
          Length = 558

 Score = 89.7 bits (45), Expect = 4e-15
 Identities = 66/73 (90%)
 Strand = Plus / Minus

                                                                       
Query: 27  taagactgaggaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatt 86
           ||||| ||| ||||| |||||||| ||||||||||| |||||||||||| ||||||| ||
Sbjct: 490 taagattgatgaagtagcaattaacgcaaaaacagccaattggaaagcaatagtcatgtt 431

                        
Query: 87  tctaatcctccaa 99
           |||||||||||||
Sbjct: 430 tctaatcctccaa 418

---

>gb|AY293371.1| Juglans hopeiensis chloroplast trnS-trnfM intergenic spacer,
           partial sequence
          Length = 559

 Score = 89.7 bits (45), Expect = 4e-15
 Identities = 66/73 (90%)
 Strand = Plus / Minus

                                                                       
Query: 27  taagactgaggaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatt 86
           ||||| ||| ||||| |||||||| ||||||||||| |||||||||||| ||||||| ||
Sbjct: 490 taagattgatgaagtagcaattaacgcaaaaacagccaattggaaagcaatagtcatgtt 431

                        
Query: 87  tctaatcctccaa 99
           |||||||||||||
Sbjct: 430 tctaatcctccaa 418

---

>gb|AY293368.1| Juglans neotropica chloroplast trnS-trnfM intergenic spacer,
           partial sequence
          Length = 558

 Score = 89.7 bits (45), Expect = 4e-15
 Identities = 66/73 (90%)
 Strand = Plus / Minus

                                                                       
Query: 27  taagactgaggaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatt 86
           ||||| ||| ||||| |||||||| ||||||||||| |||||||||||| ||||||| ||
Sbjct: 490 taagattgatgaagtagcaattaacgcaaaaacagccaattggaaagcaatagtcatgtt 431

                        
Query: 87  tctaatcctccaa 99
           |||||||||||||
Sbjct: 430 tctaatcctccaa 418

---

>gb|AY293366.1| Juglans nigra chloroplast trnS-trnfM intergenic spacer, partial
           sequence
          Length = 558

 Score = 89.7 bits (45), Expect = 4e-15
 Identities = 66/73 (90%)
 Strand = Plus / Minus

                                                                       
Query: 27  taagactgaggaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatt 86
           ||||| ||| ||||| |||||||| ||||||||||| |||||||||||| ||||||| ||
Sbjct: 490 taagattgatgaagtagcaattaacgcaaaaacagccaattggaaagcaatagtcatgtt 431

                        
Query: 87  tctaatcctccaa 99
           |||||||||||||
Sbjct: 430 tctaatcctccaa 418

---

>gb|AY293364.1| Juglans mandshurica chloroplast trnS-trnfM intergenic spacer,
           partial sequence
          Length = 559

 Score = 89.7 bits (45), Expect = 4e-15
 Identities = 66/73 (90%)
 Strand = Plus / Minus

                                                                       
Query: 27  taagactgaggaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatt 86
           ||||| ||| ||||| |||||||| ||||||||||| |||||||||||| ||||||| ||
Sbjct: 490 taagattgatgaagtagcaattaacgcaaaaacagccaattggaaagcaatagtcatgtt 431

                        
Query: 87  tctaatcctccaa 99
           |||||||||||||
Sbjct: 430 tctaatcctccaa 418

---

>gb|AY727489.1| Minuartia glabra PsbZ (psbZ) gene, complete cds; and tRNA-Gly
           (trnG) gene, complete sequence; chloroplast
          Length = 1047

 Score = 89.7 bits (45), Expect = 4e-15
 Identities = 75/85 (88%)
 Strand = Plus / Minus

                                                                       
Query: 27  taagactgaggaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatt 86
           ||||| ||| ||||| || ||||||||||||||||| |||||||||||  |||||||| |
Sbjct: 352 taagattgatgaagtagcgattaatgcaaaaacagccaattggaaagctatagtcatact 293

                                    
Query: 87  tctaatcctccaagctaccatcaaa 111
           | |||||||||||||||||| ||||
Sbjct: 292 tataatcctccaagctaccaacaaa 268

---

>gb|AY727487.1| Minuartia cumberlandensis PsbZ (psbZ) gene, complete cds; and
           tRNA-Gly (trnG) gene, complete sequence; chloroplast
          Length = 1038

 Score = 89.7 bits (45), Expect = 4e-15
 Identities = 75/85 (88%)
 Strand = Plus / Minus

                                                                       
Query: 27  taagactgaggaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatt 86
           ||||| ||| ||||| || ||||||||||||||||| |||||||||||  |||||||| |
Sbjct: 352 taagattgatgaagtagcgattaatgcaaaaacagccaattggaaagctatagtcatact 293

                                    
Query: 87  tctaatcctccaagctaccatcaaa 111
           | |||||||||||||||||| ||||
Sbjct: 292 tataatcctccaagctaccaacaaa 268

---

>emb|AM085629.1| Minuartia biflora chloroplast psbZ gene for photosystem II reaction
           center Z protein and tRNA-Gly gene for transfer RNA-Gly,
           isolate MB19
          Length = 1050

 Score = 89.7 bits (45), Expect = 4e-15
 Identities = 75/85 (88%)
 Strand = Plus / Minus

                                                                       
Query: 27  taagactgaggaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatt 86
           ||||| ||| ||||| || ||||||||||||||||| |||||||||||  |||||||| |
Sbjct: 411 taagattgatgaagtagcgattaatgcaaaaacagccaattggaaagctatagtcatact 352

                                    
Query: 87  tctaatcctccaagctaccatcaaa 111
           | |||||||||||||||||| ||||
Sbjct: 351 tataatcctccaagctaccaacaaa 327

---

>emb|AM085628.1| Minuartia biflora chloroplast psbZ gene for photosystem II reaction
           center Z protein and tRNA-Gly gene for transfer RNA-Gly,
           isolate MB18
          Length = 1050

 Score = 89.7 bits (45), Expect = 4e-15
 Identities = 75/85 (88%)
 Strand = Plus / Minus

                                                                       
Query: 27  taagactgaggaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatt 86
           ||||| ||| ||||| || ||||||||||||||||| |||||||||||  |||||||| |
Sbjct: 411 taagattgatgaagtagcgattaatgcaaaaacagccaattggaaagctatagtcatact 352

                                    
Query: 87  tctaatcctccaagctaccatcaaa 111
           | |||||||||||||||||| ||||
Sbjct: 351 tataatcctccaagctaccaacaaa 327

---

>emb|AM085627.1| Minuartia biflora chloroplast psbZ gene for photosystem II reaction
           center Z protein and tRNA-Gly gene for transfer RNA-Gly,
           isolate MB17
          Length = 911

 Score = 89.7 bits (45), Expect = 4e-15
 Identities = 75/85 (88%)
 Strand = Plus / Minus

                                                                       
Query: 27  taagactgaggaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatt 86
           ||||| ||| ||||| || ||||||||||||||||| |||||||||||  |||||||| |
Sbjct: 411 taagattgatgaagtagcgattaatgcaaaaacagccaattggaaagctatagtcatact 352

                                    
Query: 87  tctaatcctccaagctaccatcaaa 111
           | |||||||||||||||||| ||||
Sbjct: 351 tataatcctccaagctaccaacaaa 327

---

>emb|AM085626.1| Minuartia biflora chloroplast psbZ gene for photosystem II reaction
           center Z protein and tRNA-Gly gene for transfer RNA-Gly,
           isolate MB11
          Length = 1050

 Score = 89.7 bits (45), Expect = 4e-15
 Identities = 75/85 (88%)
 Strand = Plus / Minus

                                                                       
Query: 27  taagactgaggaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatt 86
           ||||| ||| ||||| || ||||||||||||||||| |||||||||||  |||||||| |
Sbjct: 411 taagattgatgaagtagcgattaatgcaaaaacagccaattggaaagctatagtcatact 352

                                    
Query: 87  tctaatcctccaagctaccatcaaa 111
           | |||||||||||||||||| ||||
Sbjct: 351 tataatcctccaagctaccaacaaa 327

---

>emb|AM085625.1| Minuartia biflora chloroplast psbZ gene for photosystem II reaction
           center Z protein and tRNA-Gly gene for transfer RNA-Gly,
           isolate MB1
          Length = 1050

 Score = 89.7 bits (45), Expect = 4e-15
 Identities = 75/85 (88%)
 Strand = Plus / Minus

                                                                       
Query: 27  taagactgaggaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatt 86
           ||||| ||| ||||| || ||||||||||||||||| |||||||||||  |||||||| |
Sbjct: 411 taagattgatgaagtagcgattaatgcaaaaacagccaattggaaagctatagtcatact 352

                                    
Query: 87  tctaatcctccaagctaccatcaaa 111
           | |||||||||||||||||| ||||
Sbjct: 351 tataatcctccaagctaccaacaaa 327

---

>gb|AY754811.1| Carica papaya RAPD-SCAR marker sequence
          Length = 614

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 95/111 (85%), Gaps = 1/111 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
           ||||||||  |||||||||| || | ||||| | | ||||| |||||||||||||||  |
Sbjct: 246 caaatacaatgggtacacta-atcagtaagatttatgaagtagcaattaatgcaaaacta 304

                                                              
Query: 61  gctaattggaaagcactagtcatatttctaatcctccaagctaccatcaaa 111
           || |||||||||||| ||||||| ||||||||||||||||| |||| ||||
Sbjct: 305 gccaattggaaagcaatagtcatgtttctaatcctccaagcaaccaacaaa 355

---

>gb|AY293367.1| Juglans cathayensis chloroplast trnS-trnfM intergenic spacer,
           partial sequence
          Length = 559

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 83/95 (87%), Gaps = 1/95 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
           ||||||||  |||||||||| || | ||||| ||| ||||| |||||||| |||||||||
Sbjct: 515 caaatacaacgggtacacta-atcagtaagattgatgaagtagcaattaacgcaaaaaca 457

                                              
Query: 61  gctaattggaaagcactagtcatatttctaatcct 95
           || |||||||||||| ||||||| |||||||||||
Sbjct: 456 gccaattggaaagcaatagtcatgtttctaatcct 422

---

>emb|Z00044.2|CHNTXX Nicotiana tabacum chloroplast genome DNA
          Length = 155943

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 68/76 (89%)
 Strand = Plus / Minus

                                                                         
Query: 37    gaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatttctaatcctc 96
             ||||| |||||||||||||||||||| ||||||||||||  ||||||  || ||||||||
Sbjct: 37645 gaagtagcaattaatgcaaaaacagccaattggaaagcaagagtcatgcttttaatcctc 37586

                             
Query: 97    caagctaccatcaaat 112
             |||||||||| |||||
Sbjct: 37585 caagctaccaacaaat 37570



 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 184   atcatgaatccattgattct 203
             ||||||||||||||||||||
Sbjct: 37490 atcatgaatccattgattct 37471

---

>gb|AC140103.7| Medicago truncatula clone mth2-9i16, complete sequence
          Length = 96937

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 53/56 (94%)
 Strand = Plus / Minus

                                                                     
Query: 44    caattaatgcaaaaacagctaattggaaagcactagtcatatttctaatcctccaa 99
             ||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||
Sbjct: 60511 caattaatgcaaaaacagctaattgaaaagcaatagtcatgtttctaatcctccaa 60456

---

>emb|AJ316582.1|ABE316582 Atropa belladonna complete chloroplast genome, strain Ab5p(kan)
          Length = 156687

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 68/76 (89%)
 Strand = Plus / Minus

                                                                         
Query: 37    gaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatttctaatcctc 96
             ||||| |||||||||||||||||||| ||||||||||||  ||||||  || ||||||||
Sbjct: 37379 gaagtagcaattaatgcaaaaacagccaattggaaagcaagagtcatgcttttaatcctc 37320

                             
Query: 97    caagctaccatcaaat 112
             |||||||||| |||||
Sbjct: 37319 caagctaccaacaaat 37304

---

>gb|DQ386163.1| Solanum tuberosum cultivar Desiree chloroplast, complete genome
          Length = 155298

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 68/76 (89%)
 Strand = Plus / Minus

                                                                         
Query: 37    gaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatttctaatcctc 96
             ||||| |||||||||||||||||||| ||||||||||||  ||||||  || ||||||||
Sbjct: 36896 gaagtagcaattaatgcaaaaacagccaattggaaagcaagagtcatgcttttaatcctc 36837

                             
Query: 97    caagctaccatcaaat 112
             |||||||||| |||||
Sbjct: 36836 caagctaccaacaaat 36821



 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 184   atcatgaatccattgattct 203
             ||||||||||||||||||||
Sbjct: 36741 atcatgaatccattgattct 36722

---

>gb|AC093544.8| Medicago truncatula chloroplast, complete genome, complete sequence
          Length = 124033

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 53/56 (94%)
 Strand = Plus / Minus

                                                                     
Query: 44    caattaatgcaaaaacagctaattggaaagcactagtcatatttctaatcctccaa 99
             ||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||
Sbjct: 99177 caattaatgcaaaaacagctaattgaaaagcaatagtcatgtttctaatcctccaa 99122

---

>gb|AY727499.1| Trilisa paniculata PsbZ (psbZ) gene, complete cds; and tRNA-Gly
           (trnG) gene, complete sequence; chloroplast
          Length = 1095

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 71/80 (88%)
 Strand = Plus / Minus

                                                                       
Query: 27  taagactgaggaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatt 86
           ||||| ||| ||||| |||||||||||||||||||| ||||||||||||  ||||||  |
Sbjct: 394 taagattgatgaagtagcaattaatgcaaaaacagccaattggaaagcaagagtcatgct 335

                               
Query: 87  tctaatcctccaagctacca 106
           | ||||||||||||||||||
Sbjct: 334 tttaatcctccaagctacca 315

---

>gb|AY727495.1| Solanum ptychanthum PsbZ (psbZ) gene, complete cds; and tRNA-Gly
           (trnG) gene, complete sequence; chloroplast
          Length = 1115

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 68/76 (89%)
 Strand = Plus / Minus

                                                                       
Query: 37  gaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatttctaatcctc 96
           ||||| |||||||||||||||||||| ||||||||||||  ||||||  || ||||||||
Sbjct: 411 gaagtagcaattaatgcaaaaacagccaattggaaagcaagagtcatgcttttaatcctc 352

                           
Query: 97  caagctaccatcaaat 112
           |||||||||| |||||
Sbjct: 351 caagctaccaacaaat 336



 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 184 atcatgaatccattgattct 203
           ||||||||||||||||||||
Sbjct: 256 atcatgaatccattgattct 237

---

>gb|AY727494.1| Solanum americanum PsbZ (psbZ) gene, complete cds; and tRNA-Gly
           (trnG) gene, complete sequence; chloroplast
          Length = 1114

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 68/76 (89%)
 Strand = Plus / Minus

                                                                       
Query: 37  gaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatttctaatcctc 96
           ||||| |||||||||||||||||||| ||||||||||||  ||||||  || ||||||||
Sbjct: 411 gaagtagcaattaatgcaaaaacagccaattggaaagcaagagtcatgcttttaatcctc 352

                           
Query: 97  caagctaccatcaaat 112
           |||||||||| |||||
Sbjct: 351 caagctaccaacaaat 336



 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 184 atcatgaatccattgattct 203
           ||||||||||||||||||||
Sbjct: 256 atcatgaatccattgattct 237

---

>gb|AY727493.1| Solanum physalifolium PsbZ (psbZ) gene, complete cds; and tRNA-Gly
           (trnG) gene, complete sequence; chloroplast
          Length = 1115

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 68/76 (89%)
 Strand = Plus / Minus

                                                                       
Query: 37  gaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatttctaatcctc 96
           ||||| |||||||||||||||||||| ||||||||||||  ||||||  || ||||||||
Sbjct: 411 gaagtagcaattaatgcaaaaacagccaattggaaagcaagagtcatgcttttaatcctc 352

                           
Query: 97  caagctaccatcaaat 112
           |||||||||| |||||
Sbjct: 351 caagctaccaacaaat 336



 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 184 atcatgaatccattgattct 203
           ||||||||||||||||||||
Sbjct: 256 atcatgaatccattgattct 237

---

>gb|DQ347959.1| Lycopersicon esculentum cultivar LA3023 chloroplast, complete genome
          Length = 155461

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 68/76 (89%)
 Strand = Plus / Minus

                                                                         
Query: 37    gaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatttctaatcctc 96
             ||||| |||||||||||||||||||| ||||||||||||  ||||||  || ||||||||
Sbjct: 36752 gaagtagcaattaatgcaaaaacagccaattggaaagcaagagtcatgcttttaatcctc 36693

                             
Query: 97    caagctaccatcaaat 112
             |||||||||| |||||
Sbjct: 36692 caagctaccaacaaat 36677



 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 184   atcatgaatccattgattct 203
             ||||||||||||||||||||
Sbjct: 36597 atcatgaatccattgattct 36578

---

>gb|DQ347958.1| Solanum bulbocastanum cultivar PT29 chloroplast, complete genome
          Length = 155371

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 68/76 (89%)
 Strand = Plus / Minus

                                                                         
Query: 37    gaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatttctaatcctc 96
             ||||| |||||||||||||||||||| ||||||||||||  ||||||  || ||||||||
Sbjct: 36777 gaagtagcaattaatgcaaaaacagccaattggaaagcaagagtcatgcttttaatcctc 36718

                             
Query: 97    caagctaccatcaaat 112
             |||||||||| |||||
Sbjct: 36717 caagctaccaacaaat 36702



 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 184   atcatgaatccattgattct 203
             ||||||||||||||||||||
Sbjct: 36622 atcatgaatccattgattct 36603

---

>dbj|AB237912.1| Nicotiana sylvestris chloroplast DNA, complete sequence
          Length = 155941

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 68/76 (89%)
 Strand = Plus / Minus

                                                                         
Query: 37    gaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatttctaatcctc 96
             ||||| |||||||||||||||||||| ||||||||||||  ||||||  || ||||||||
Sbjct: 37642 gaagtagcaattaatgcaaaaacagccaattggaaagcaagagtcatgcttttaatcctc 37583

                             
Query: 97    caagctaccatcaaat 112
             |||||||||| |||||
Sbjct: 37582 caagctaccaacaaat 37567



 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 184   atcatgaatccattgattct 203
             ||||||||||||||||||||
Sbjct: 37487 atcatgaatccattgattct 37468

---

>dbj|AB240139.1| Nicotiana tomentosiformis chloroplast DNA, complete sequence
          Length = 155745

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 68/76 (89%)
 Strand = Plus / Minus

                                                                         
Query: 37    gaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatttctaatcctc 96
             ||||| |||||||||||||||||||| ||||||||||||  ||||||  || ||||||||
Sbjct: 37571 gaagtagcaattaatgcaaaaacagccaattggaaagcaagagtcatgcttttaatcctc 37512

                             
Query: 97    caagctaccatcaaat 112
             |||||||||| |||||
Sbjct: 37511 caagctaccaacaaat 37496



 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 184   atcatgaatccattgattct 203
             ||||||||||||||||||||
Sbjct: 37416 atcatgaatccattgattct 37397

---

>gb|DQ231562.1| Solanum tuberosum chloroplast, complete genome
          Length = 155312

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 68/76 (89%)
 Strand = Plus / Minus

                                                                         
Query: 37    gaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatttctaatcctc 96
             ||||| |||||||||||||||||||| ||||||||||||  ||||||  || ||||||||
Sbjct: 36900 gaagtagcaattaatgcaaaaacagccaattggaaagcaagagtcatgcttttaatcctc 36841

                             
Query: 97    caagctaccatcaaat 112
             |||||||||| |||||
Sbjct: 36840 caagctaccaacaaat 36825



 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 184   atcatgaatccattgattct 203
             ||||||||||||||||||||
Sbjct: 36745 atcatgaatccattgattct 36726

---

>emb|AJ312393.1|CTR312393 Chloroplast transformation vector pRB95
          Length = 7626

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 68/76 (89%)
 Strand = Plus / Minus

                                                                        
Query: 37   gaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatttctaatcctc 96
            ||||| |||||||||||||||||||| ||||||||||||  ||||||  || ||||||||
Sbjct: 5541 gaagtagcaattaatgcaaaaacagccaattggaaagcaagagtcatgcttttaatcctc 5482

                            
Query: 97   caagctaccatcaaat 112
            |||||||||| |||||
Sbjct: 5481 caagctaccaacaaat 5466



 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 184  atcatgaatccattgattct 203
            ||||||||||||||||||||
Sbjct: 5386 atcatgaatccattgattct 5367

---

>emb|AJ312392.1|CTR312392 Chloroplast transformation vector pRB94
          Length = 7626

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 68/76 (89%)
 Strand = Plus / Minus

                                                                        
Query: 37   gaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatttctaatcctc 96
            ||||| |||||||||||||||||||| ||||||||||||  ||||||  || ||||||||
Sbjct: 5541 gaagtagcaattaatgcaaaaacagccaattggaaagcaagagtcatgcttttaatcctc 5482

                            
Query: 97   caagctaccatcaaat 112
            |||||||||| |||||
Sbjct: 5481 caagctaccaacaaat 5466



 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 184  atcatgaatccattgattct 203
            ||||||||||||||||||||
Sbjct: 5386 atcatgaatccattgattct 5367

---

>emb|AJ312391.1|CTR312391 Chloroplast transformation vector pRB70
          Length = 7454

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 68/76 (89%)
 Strand = Plus / Minus

                                                                        
Query: 37   gaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatttctaatcctc 96
            ||||| |||||||||||||||||||| ||||||||||||  ||||||  || ||||||||
Sbjct: 5608 gaagtagcaattaatgcaaaaacagccaattggaaagcaagagtcatgcttttaatcctc 5549

                            
Query: 97   caagctaccatcaaat 112
            |||||||||| |||||
Sbjct: 5548 caagctaccaacaaat 5533



 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 184  atcatgaatccattgattct 203
            ||||||||||||||||||||
Sbjct: 5453 atcatgaatccattgattct 5434

---

>gb|AC145457.1| Cicer arietinum strain FLIP84-92C clone gl1-40c9, complete sequence
          Length = 23359

 Score = 85.7 bits (43), Expect = 6e-14
 Identities = 58/63 (92%)
 Strand = Plus / Minus

                                                                         
Query: 37    gaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatttctaatcctc 96
             ||||| ||||||||||||||||| |||||||| |||||| ||||||| ||||||||||||
Sbjct: 19905 gaagtagcaattaatgcaaaaacggctaattgaaaagcaatagtcatgtttctaatcctc 19846

                
Query: 97    caa 99
             |||
Sbjct: 19845 caa 19843



 Score = 42.1 bits (21), Expect = 0.81
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 177   gggtttaatcatgaatccattgatt 201
             |||||| ||||||||||||||||||
Sbjct: 19748 gggttttatcatgaatccattgatt 19724

---

>gb|AY337659.1| Sararanga philippinensis isolate Sp_17 chloroplast trnS-ycf9
           intergenic spacer, complete sequence
          Length = 477

 Score = 83.8 bits (42), Expect = 2e-13
 Identities = 61/66 (92%), Gaps = 1/66 (1%)
 Strand = Plus / Minus

                                                                       
Query: 37  gaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatttctaatcctc 96
           ||||||||||||||||||||| ||||||||||||||||| ||||||| |||  |||||||
Sbjct: 388 gaagtcgcaattaatgcaaaaccagctaattggaaagcaatagtcatgttt-gaatcctc 330

                 
Query: 97  caagct 102
           ||||||
Sbjct: 329 caagct 324



 Score = 42.1 bits (21), Expect = 0.81
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 180 tttaatcatgaatccattgattctt 204
           |||||||||||||| ||||||||||
Sbjct: 264 tttaatcatgaatcaattgattctt 240

---

>emb|AJ428413.1|CFE428413 Calycanthus fertilis var. ferax complete chloroplast genome
          Length = 153337

 Score = 83.8 bits (42), Expect = 2e-13
 Identities = 69/78 (88%)
 Strand = Plus / Minus

                                                                         
Query: 27    taagactgaggaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatt 86
             ||||| ||| ||||| |||||||||||||||||||| |||||||||||| || ||||  |
Sbjct: 37031 taagattgatgaagtagcaattaatgcaaaaacagccaattggaaagcaataatcatgct 36972

                               
Query: 87    tctaatcctccaagctac 104
             | ||||||||||||||||
Sbjct: 36971 tgtaatcctccaagctac 36954

---

>emb|AJ400848.1|SOL400848 Spinacia oleracea complete chloroplast genome
          Length = 150725

 Score = 81.8 bits (41), Expect = 9e-13
 Identities = 68/77 (88%)
 Strand = Plus / Minus

                                                                         
Query: 27    taagactgaggaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatt 86
             ||||| ||| ||||| |||||||||||||||||||| |||||||||||  ||||||||  
Sbjct: 34700 taagattgatgaagtggcaattaatgcaaaaacagccaattggaaagctatagtcatacg 34641

                              
Query: 87    tctaatcctccaagcta 103
             | |||||||||||||||
Sbjct: 34640 tataatcctccaagcta 34624

---

>dbj|AB206610.1| Arcterica nana chloroplast DNA, trnS-trnfM intergenic spacer
          Length = 935

 Score = 81.8 bits (41), Expect = 9e-13
 Identities = 71/81 (87%)
 Strand = Plus / Minus

                                                                       
Query: 27  taagactgaggaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatt 86
           ||||| ||| |||||| ||||||||||||||||||| | |||||||||| |||||||  |
Sbjct: 431 taagattgatgaagtcacaattaatgcaaaaacagccagttggaaagcaatagtcattct 372

                                
Query: 87  tctaatcctccaagctaccat 107
           | | |||||||||||||||||
Sbjct: 371 ttttatcctccaagctaccat 351

---

>dbj|AB206609.1| Pieris floribunda chloroplast DNA, trnS-trnfM intergenic spacer
          Length = 936

 Score = 81.8 bits (41), Expect = 9e-13
 Identities = 71/81 (87%)
 Strand = Plus / Minus

                                                                       
Query: 27  taagactgaggaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatt 86
           ||||| ||| |||||| ||||||||||||||||||| | |||||||||| |||||||  |
Sbjct: 431 taagattgatgaagtcacaattaatgcaaaaacagccagttggaaagcaatagtcattct 372

                                
Query: 87  tctaatcctccaagctaccat 107
           | | |||||||||||||||||
Sbjct: 371 ttttatcctccaagctaccat 351

---

>dbj|AB206608.1| Pieris phillyreifolia chloroplast DNA, trnS-trnfM intergenic spacer
          Length = 948

 Score = 81.8 bits (41), Expect = 9e-13
 Identities = 71/81 (87%)
 Strand = Plus / Minus

                                                                       
Query: 27  taagactgaggaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatt 86
           ||||| ||| |||||| ||||||||||||||||||| | |||||||||| |||||||  |
Sbjct: 432 taagattgatgaagtcacaattaatgcaaaaacagccagttggaaagcaatagtcattct 373

                                
Query: 87  tctaatcctccaagctaccat 107
           | | |||||||||||||||||
Sbjct: 372 ttttatcctccaagctaccat 352

---

>dbj|AB206607.1| Pieris formosa chloroplast DNA, trnS-trnfM intergenic spacer
          Length = 942

 Score = 81.8 bits (41), Expect = 9e-13
 Identities = 71/81 (87%)
 Strand = Plus / Minus

                                                                       
Query: 27  taagactgaggaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatt 86
           ||||| ||| |||||| ||||||||||||||||||| | |||||||||| |||||||  |
Sbjct: 431 taagattgatgaagtcacaattaatgcaaaaacagccagttggaaagcaatagtcattct 372

                                
Query: 87  tctaatcctccaagctaccat 107
           | | |||||||||||||||||
Sbjct: 371 ttttatcctccaagctaccat 351

---

>dbj|AB206606.1| Pieris formosa var. forrestii chloroplast DNA, trnS-trnfM
           intergenic spacer
          Length = 938

 Score = 81.8 bits (41), Expect = 9e-13
 Identities = 71/81 (87%)
 Strand = Plus / Minus

                                                                       
Query: 27  taagactgaggaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatt 86
           ||||| ||| |||||| ||||||||||||||||||| | |||||||||| |||||||  |
Sbjct: 431 taagattgatgaagtcacaattaatgcaaaaacagccagttggaaagcaatagtcattct 372

                                
Query: 87  tctaatcctccaagctaccat 107
           | | |||||||||||||||||
Sbjct: 371 ttttatcctccaagctaccat 351

---

>dbj|AB206605.1| Pieris taiwanensis chloroplast DNA, trnS-trnfM intergenic spacer
          Length = 939

 Score = 81.8 bits (41), Expect = 9e-13
 Identities = 71/81 (87%)
 Strand = Plus / Minus

                                                                       
Query: 27  taagactgaggaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatt 86
           ||||| ||| |||||| ||||||||||||||||||| | |||||||||| |||||||  |
Sbjct: 431 taagattgatgaagtcacaattaatgcaaaaacagccagttggaaagcaatagtcattct 372

                                
Query: 87  tctaatcctccaagctaccat 107
           | | |||||||||||||||||
Sbjct: 371 ttttatcctccaagctaccat 351

---

>dbj|AB206604.1| Pieris koidzumiana chloroplast DNA, trnS-trnfM intergenic spacer,
           country:Japan:Okinawa, Okinawa Island
          Length = 940

 Score = 81.8 bits (41), Expect = 9e-13
 Identities = 71/81 (87%)
 Strand = Plus / Minus

                                                                       
Query: 27  taagactgaggaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatt 86
           ||||| ||| |||||| ||||||||||||||||||| | |||||||||| |||||||  |
Sbjct: 431 taagattgatgaagtcacaattaatgcaaaaacagccagttggaaagcaatagtcattct 372

                                
Query: 87  tctaatcctccaagctaccat 107
           | | |||||||||||||||||
Sbjct: 371 ttttatcctccaagctaccat 351

---

>dbj|AB206603.1| Pieris koidzumiana chloroplast DNA, trnS-trnfM intergenic spacer,
           country:Japan:Kagoshima, Amamioshima Island
          Length = 939

 Score = 81.8 bits (41), Expect = 9e-13
 Identities = 71/81 (87%)
 Strand = Plus / Minus

                                                                       
Query: 27  taagactgaggaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatt 86
           ||||| ||| |||||| ||||||||||||||||||| | |||||||||| |||||||  |
Sbjct: 431 taagattgatgaagtcacaattaatgcaaaaacagccagttggaaagcaatagtcattct 372

                                
Query: 87  tctaatcctccaagctaccat 107
           | | |||||||||||||||||
Sbjct: 371 ttttatcctccaagctaccat 351

---

>dbj|AB206602.1| Pieris japonica var. yakushimensis chloroplast DNA, trnS-trnfM
           intergenic spacer
          Length = 939

 Score = 81.8 bits (41), Expect = 9e-13
 Identities = 71/81 (87%)
 Strand = Plus / Minus

                                                                       
Query: 27  taagactgaggaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatt 86
           ||||| ||| |||||| ||||||||||||||||||| | |||||||||| |||||||  |
Sbjct: 431 taagattgatgaagtcacaattaatgcaaaaacagccagttggaaagcaatagtcattct 372

                                
Query: 87  tctaatcctccaagctaccat 107
           | | |||||||||||||||||
Sbjct: 371 ttttatcctccaagctaccat 351

---

>dbj|AB206601.1| Pieris japonica chloroplast DNA, trnS-trnfM intergenic spacer
          Length = 939

 Score = 81.8 bits (41), Expect = 9e-13
 Identities = 71/81 (87%)
 Strand = Plus / Minus

                                                                       
Query: 27  taagactgaggaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatt 86
           ||||| ||| |||||| ||||||||||||||||||| | |||||||||| |||||||  |
Sbjct: 431 taagattgatgaagtcacaattaatgcaaaaacagccagttggaaagcaatagtcattct 372

                                
Query: 87  tctaatcctccaagctaccat 107
           | | |||||||||||||||||
Sbjct: 371 ttttatcctccaagctaccat 351

---

>gb|AY727498.1| Gratiola brevifolia PsbZ (psbZ) gene, complete cds; and tRNA-Gly
           (trnG) gene, complete sequence; chloroplast
          Length = 1069

 Score = 81.8 bits (41), Expect = 9e-13
 Identities = 77/89 (86%)
 Strand = Plus / Minus

                                                                       
Query: 27  taagactgaggaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatt 86
           ||||| ||| ||||| |||||||||||||||||||| ||||||||| ||  ||||||  |
Sbjct: 373 taagattgatgaagtagcaattaatgcaaaaacagccaattggaaaacaagagtcattct 314

                                        
Query: 87  tctaatcctccaagctaccatcaaataaa 115
           | |||||||||||| ||||| ||||||||
Sbjct: 313 tttaatcctccaagataccaacaaataaa 285

---

>gb|AY727497.1| Gratiola neglecta PsbZ (psbZ) gene, complete cds; and tRNA-Gly
           (trnG) gene, complete sequence; chloroplast
          Length = 1052

 Score = 81.8 bits (41), Expect = 9e-13
 Identities = 77/89 (86%)
 Strand = Plus / Minus

                                                                       
Query: 27  taagactgaggaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatt 86
           ||||| ||| ||||| |||||||||||||||||||| ||||||||| ||  ||||||  |
Sbjct: 377 taagattgatgaagtagcaattaatgcaaaaacagccaattggaaaacaagagtcattct 318

                                        
Query: 87  tctaatcctccaagctaccatcaaataaa 115
           | |||||||||||| ||||| ||||||||
Sbjct: 317 tttaatcctccaagataccaacaaataaa 289

---

>gb|AY727496.1| Gratiola virginiana PsbZ (psbZ) gene, complete cds; and tRNA-Gly
           (trnG) gene, complete sequence; chloroplast
          Length = 1054

 Score = 81.8 bits (41), Expect = 9e-13
 Identities = 77/89 (86%)
 Strand = Plus / Minus

                                                                       
Query: 27  taagactgaggaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatt 86
           ||||| ||| ||||| |||||||||||||||||||| ||||||||| ||  ||||||  |
Sbjct: 373 taagattgatgaagtagcaattaatgcaaaaacagccaattggaaaacaagagtcattct 314

                                        
Query: 87  tctaatcctccaagctaccatcaaataaa 115
           | |||||||||||| ||||| ||||||||
Sbjct: 313 tttaatcctccaagataccaacaaataaa 285

---

>gb|DQ069352.1| Ranunculus macranthus photosystem II reaction center Z protein
          (psbZ) gene, partial cds; chloroplast
          Length = 186

 Score = 79.8 bits (40), Expect = 4e-12
 Identities = 73/83 (87%), Gaps = 1/83 (1%)
 Strand = Plus / Minus

                                                                      
Query: 1  caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
          ||||||||  |||||||||| || | ||||| ||| ||||| ||||||||||||||||||
Sbjct: 82 caaatacaacgggtacacta-atcaataagattgatgaagtagcaattaatgcaaaaaca 24

                                 
Query: 61 gctaattggaaagcactagtcat 83
          || |||||||||||| |||||||
Sbjct: 23 gccaattggaaagcaatagtcat 1

---

>gb|DQ069351.1| Nuphar advena photosystem II reaction center Z protein (psbZ)
          gene, partial cds; chloroplast
          Length = 186

 Score = 79.8 bits (40), Expect = 4e-12
 Identities = 73/83 (87%), Gaps = 1/83 (1%)
 Strand = Plus / Minus

                                                                      
Query: 1  caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
          ||||||||  |||||||||| || | ||||| ||| ||||| ||||||||||||||||||
Sbjct: 82 caaatacaacgggtacacta-atcaataagattgatgaagtagcaattaatgcaaaaaca 24

                                 
Query: 61 gctaattggaaagcactagtcat 83
          || |||||||||||| |||||||
Sbjct: 23 gccaattggaaagcaatagtcat 1

---

>gb|AF301464.1|AF301464 Platanthera praeclara tRNA-Ser gene, partial sequence; chloroplast
           gene for chloroplast product
          Length = 480

 Score = 79.8 bits (40), Expect = 4e-12
 Identities = 67/76 (88%)
 Strand = Plus / Minus

                                                                       
Query: 37  gaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatttctaatcctc 96
           ||||| ||||||||||||||||||||||||||||||||| |||||||  || | ||||||
Sbjct: 347 gaagttgcaattaatgcaaaaacagctaattggaaagcaatagtcatgcttgtcatcctc 288

                           
Query: 97  caagctaccatcaaat 112
           ||| ||| || |||||
Sbjct: 287 caatctatcaacaaat 272

---

>gb|DQ231548.1| Brassica rapa subsp. pekinensis chloroplast sequence
          Length = 153482

 Score = 79.8 bits (40), Expect = 4e-12
 Identities = 88/103 (85%), Gaps = 1/103 (0%)
 Strand = Plus / Minus

                                                                         
Query: 1     caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
             ||||||||  |||||||||| || | ||||| ||| |||||   ||||||||||||||||
Sbjct: 35014 caaatacaacgggtacacta-atcagtaagattgatgaagtaataattaatgcaaaaaca 34956

                                                        
Query: 61    gctaattggaaagcactagtcatatttctaatcctccaagcta 103
             || ||||| |||||| ||||||| ||| |||||||||||||||
Sbjct: 34955 gccaattgaaaagcaatagtcatgtttttaatcctccaagcta 34913

---

>dbj|AP000423.1| Arabidopsis thaliana chloroplast genomic DNA, complete sequence,
             strain:Columbia
          Length = 154478

 Score = 79.8 bits (40), Expect = 4e-12
 Identities = 88/103 (85%), Gaps = 1/103 (0%)
 Strand = Plus / Minus

                                                                         
Query: 1     caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
             ||||||||  |||||||||| || | ||||| ||| |||||   ||||||||||||||| 
Sbjct: 35832 caaatacaacgggtacacta-atcagtaagattgatgaagtaataattaatgcaaaaact 35774

                                                        
Query: 61    gctaattggaaagcactagtcatatttctaatcctccaagcta 103
             || |||||||||||| ||||||| ||| |||||||||||||||
Sbjct: 35773 gccaattggaaagcaatagtcatgtttttaatcctccaagcta 35731

---

>gb|AY363054.1| Spiranthes romanzoffiana trnS gene and trnS-trnfM intergenic
           spacer, partial sequence; chloroplast
          Length = 947

 Score = 77.8 bits (39), Expect = 1e-11
 Identities = 90/106 (84%), Gaps = 1/106 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
           ||||||||  |||||||||| || | ||||| | | ||||| |||||||||||||||| |
Sbjct: 349 caaatacaacgggtacacta-atcaataagattaatgaagttgcaattaatgcaaaaata 291

                                                         
Query: 61  gctaattggaaagcactagtcatatttctaatcctccaagctacca 106
           ||||||||||||||| |||||||  || | ||||||||| ||||||
Sbjct: 290 gctaattggaaagcaatagtcatgcttgtcatcctccaaactacca 245

---

>gb|AF301469.1|AF301469 Spiranthes vernalis tRNA-Ser gene, partial sequence; chloroplast
           gene for chloroplast product
          Length = 476

 Score = 77.8 bits (39), Expect = 1e-11
 Identities = 90/106 (84%), Gaps = 1/106 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
           ||||||||  |||||||||| || | ||||| | | ||||| |||||||||||||||| |
Sbjct: 381 caaatacaacgggtacacta-atcaataagattaatgaagttgcaattaatgcaaaaata 323

                                                         
Query: 61  gctaattggaaagcactagtcatatttctaatcctccaagctacca 106
           ||||||||||||||| |||||||  || | ||||||||| ||||||
Sbjct: 322 gctaattggaaagcaatagtcatgcttgtcatcctccaaactacca 277

---

>gb|AF301468.1|AF301468 Spiranthes romanzoffiana tRNA-Ser gene, partial sequence;
           chloroplast gene for chloroplast product
          Length = 483

 Score = 77.8 bits (39), Expect = 1e-11
 Identities = 90/106 (84%), Gaps = 1/106 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
           ||||||||  |||||||||| || | ||||| | | ||||| |||||||||||||||| |
Sbjct: 388 caaatacaacgggtacacta-atcaataagattaatgaagttgcaattaatgcaaaaata 330

                                                         
Query: 61  gctaattggaaagcactagtcatatttctaatcctccaagctacca 106
           ||||||||||||||| |||||||  || | ||||||||| ||||||
Sbjct: 329 gctaattggaaagcaatagtcatgcttgtcatcctccaaactacca 284

---

>gb|AF301467.1|AF301467 Spiranthes magnicamporum tRNA-Ser gene, partial sequence;
           chloroplast gene for chloroplast product
          Length = 476

 Score = 77.8 bits (39), Expect = 1e-11
 Identities = 90/106 (84%), Gaps = 1/106 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
           ||||||||  |||||||||| || | ||||| | | ||||| |||||||||||||||| |
Sbjct: 381 caaatacaacgggtacacta-atcaataagattaatgaagttgcaattaatgcaaaaata 323

                                                         
Query: 61  gctaattggaaagcactagtcatatttctaatcctccaagctacca 106
           ||||||||||||||| |||||||  || | ||||||||| ||||||
Sbjct: 322 gctaattggaaagcaatagtcatgcttgtcatcctccaaactacca 277

---

>gb|AF301466.1|AF301466 Spiranthes diluvialis tRNA-Ser gene, partial sequence; chloroplast
           gene for chloroplast product
          Length = 483

 Score = 77.8 bits (39), Expect = 1e-11
 Identities = 90/106 (84%), Gaps = 1/106 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
           ||||||||  |||||||||| || | ||||| | | ||||| |||||||||||||||| |
Sbjct: 388 caaatacaacgggtacacta-atcaataagattaatgaagttgcaattaatgcaaaaata 330

                                                         
Query: 61  gctaattggaaagcactagtcatatttctaatcctccaagctacca 106
           ||||||||||||||| |||||||  || | ||||||||| ||||||
Sbjct: 329 gctaattggaaagcaatagtcatgcttgtcatcctccaaactacca 284

---

>gb|AF301465.1|AF301465 Spiranthes cernua tRNA-Ser gene, partial sequence; chloroplast gene
           for chloroplast product
          Length = 502

 Score = 77.8 bits (39), Expect = 1e-11
 Identities = 90/106 (84%), Gaps = 1/106 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
           ||||||||  |||||||||| || | ||||| | | ||||| |||||||||||||||| |
Sbjct: 406 caaatacaacgggtacacta-atcaataagattaatgaagttgcaattaatgcaaaaata 348

                                                         
Query: 61  gctaattggaaagcactagtcatatttctaatcctccaagctacca 106
           ||||||||||||||| |||||||  || | ||||||||| ||||||
Sbjct: 347 gctaattggaaagcaatagtcatgcttgtcatcctccaaactacca 302

---

>emb|AM087200.2| Lycopersicon esculentum complete chloroplast genome
          Length = 155460

 Score = 73.8 bits (37), Expect = 2e-10
 Identities = 68/77 (88%), Gaps = 1/77 (1%)
 Strand = Plus / Minus

                                                                         
Query: 37    gaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcat-atttctaatcct 95
             ||||| |||||||||||||||||||| ||||||||||||  ||||||   || |||||||
Sbjct: 36756 gaagtagcaattaatgcaaaaacagccaattggaaagcaagagtcatggcttttaatcct 36697

                              
Query: 96    ccaagctaccatcaaat 112
             ||||||||||| |||||
Sbjct: 36696 ccaagctaccaacaaat 36680



 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 184   atcatgaatccattgattct 203
             ||||||||||||||||||||
Sbjct: 36600 atcatgaatccattgattct 36581

---

>emb|AJ879453.1| Acorus calamus chloroplast, complete genome
          Length = 153821

 Score = 71.9 bits (36), Expect = 9e-10
 Identities = 84/99 (84%), Gaps = 1/99 (1%)
 Strand = Plus / Minus

                                                                         
Query: 1     caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
             ||||||||  |||||||||| || | |||||  || |||||||||||||||||||||| |
Sbjct: 36523 caaatacaacgggtacacta-atcaataagatcgatgaagtcgcaattaatgcaaaaata 36465

                                                    
Query: 61    gctaattggaaagcactagtcatatttctaatcctccaa 99
             || ||||| |||||| |||||||  || |||||||||||
Sbjct: 36464 gccaattgaaaagcaatagtcatgcttgtaatcctccaa 36426

---

>emb|AJ427520.1|ENA427520 Eritrichium nanum chloroplast tRNA-Ser(UGA) (partial),
           tRNA-Gly(GCC), tRNA-fMet(CAU) (partial) genes, specimen
           voucher Population 25
          Length = 1113

 Score = 71.9 bits (36), Expect = 9e-10
 Identities = 66/76 (86%)
 Strand = Plus / Minus

                                                                       
Query: 37  gaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatttctaatcctc 96
           ||||| ||||||||||||||||| || ||||||||||||  ||||||  || ||||||||
Sbjct: 448 gaagtagcaattaatgcaaaaacggccaattggaaagcaagagtcatgcttttaatcctc 389

                           
Query: 97  caagctaccatcaaat 112
           || ||||||| |||||
Sbjct: 388 cacgctaccaacaaat 373

---

>emb|AJ427519.1|ENA427519 Eritrichium nanum chloroplast tRNA-Ser(UGA) (partial),
           tRNA-Gly(GCC), tRNA-fMet(CAU) (partial) genes, specimen
           voucher Population 24
          Length = 1118

 Score = 71.9 bits (36), Expect = 9e-10
 Identities = 66/76 (86%)
 Strand = Plus / Minus

                                                                       
Query: 37  gaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatttctaatcctc 96
           ||||| ||||||||||||||||| || ||||||||||||  ||||||  || ||||||||
Sbjct: 453 gaagtagcaattaatgcaaaaacggccaattggaaagcaagagtcatgcttttaatcctc 394

                           
Query: 97  caagctaccatcaaat 112
           || ||||||| |||||
Sbjct: 393 cacgctaccaacaaat 378

---

>emb|AJ427518.1|ENA427518 Eritrichium nanum chloroplast tRNA-Ser(UGA) (partial),
           tRNA-Gly(GCC), tRNA-fMet(CAU) (partial) genes, specimen
           voucher Population 06
          Length = 1112

 Score = 71.9 bits (36), Expect = 9e-10
 Identities = 66/76 (86%)
 Strand = Plus / Minus

                                                                       
Query: 37  gaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatttctaatcctc 96
           ||||| ||||||||||||||||| || ||||||||||||  ||||||  || ||||||||
Sbjct: 448 gaagtagcaattaatgcaaaaacggccaattggaaagcaagagtcatgcttttaatcctc 389

                           
Query: 97  caagctaccatcaaat 112
           || ||||||| |||||
Sbjct: 388 cacgctaccaacaaat 373

---

>emb|AJ427517.1|ENA427517 Eritrichium nanum chloroplast tRNA-Ser(UGA) (partial),
           tRNA-Gly(GCC), tRNA-fMet(CAU) (partial) genes, specimen
           voucher Population 05
          Length = 1112

 Score = 71.9 bits (36), Expect = 9e-10
 Identities = 66/76 (86%)
 Strand = Plus / Minus

                                                                       
Query: 37  gaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatttctaatcctc 96
           ||||| ||||||||||||||||| || ||||||||||||  ||||||  || ||||||||
Sbjct: 448 gaagtagcaattaatgcaaaaacggccaattggaaagcaagagtcatgcttttaatcctc 389

                           
Query: 97  caagctaccatcaaat 112
           || ||||||| |||||
Sbjct: 388 cacgctaccaacaaat 373

---

>emb|AJ427516.1|ENA427516 Eritrichium nanum chloroplast tRNA-Ser(UGA) (partial),
           tRNA-Gly(GCC), tRNA-fMet(CAU) (partial) genes, specimen
           voucher Population 04
          Length = 1117

 Score = 71.9 bits (36), Expect = 9e-10
 Identities = 66/76 (86%)
 Strand = Plus / Minus

                                                                       
Query: 37  gaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatttctaatcctc 96
           ||||| ||||||||||||||||| || ||||||||||||  ||||||  || ||||||||
Sbjct: 453 gaagtagcaattaatgcaaaaacggccaattggaaagcaagagtcatgcttttaatcctc 394

                           
Query: 97  caagctaccatcaaat 112
           || ||||||| |||||
Sbjct: 393 cacgctaccaacaaat 378

---

>emb|AJ427515.1|ENA427515 Eritrichium nanum chloroplast tRNA-Ser(UGA) (partial),
           tRNA-Gly(GCC), tRNA-fMet(CAU) (partial) genes, specimen
           voucher Population 03
          Length = 1117

 Score = 71.9 bits (36), Expect = 9e-10
 Identities = 66/76 (86%)
 Strand = Plus / Minus

                                                                       
Query: 37  gaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatttctaatcctc 96
           ||||| ||||||||||||||||| || ||||||||||||  ||||||  || ||||||||
Sbjct: 453 gaagtagcaattaatgcaaaaacggccaattggaaagcaagagtcatgcttttaatcctc 394

                           
Query: 97  caagctaccatcaaat 112
           || ||||||| |||||
Sbjct: 393 cacgctaccaacaaat 378

---

>emb|AJ427514.1|ENA427514 Eritrichium nanum chloroplast tRNA-Ser(UGA) (partial),
           tRNA-Gly(GCC), tRNA-fMet(CAU) (partial) genes, specimen
           voucher Population 02
          Length = 1114

 Score = 71.9 bits (36), Expect = 9e-10
 Identities = 66/76 (86%)
 Strand = Plus / Minus

                                                                       
Query: 37  gaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatttctaatcctc 96
           ||||| ||||||||||||||||| || ||||||||||||  ||||||  || ||||||||
Sbjct: 448 gaagtagcaattaatgcaaaaacggccaattggaaagcaagagtcatgcttttaatcctc 389

                           
Query: 97  caagctaccatcaaat 112
           || ||||||| |||||
Sbjct: 388 cacgctaccaacaaat 373

---

>dbj|AP003143.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0489E06
          Length = 140229

 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 36/37 (97%)
 Strand = Plus / Minus

                                                   
Query: 162    tacaagaagtangaggggtttaatcatgaatccattg 198
              ||||||||||| |||||||||||||||||||||||||
Sbjct: 123457 tacaagaagtaggaggggtttaatcatgaatccattg 123421

---

>gb|AY757813.1| Acorus gramineus LhbA (lhbA) mRNA, complete cds; chloroplast
          Length = 189

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 71/83 (85%), Gaps = 1/83 (1%)
 Strand = Plus / Minus

                                                                      
Query: 1  caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
          ||||||||  |||||||||| || | |||||  || |||||||||||||||||||||| |
Sbjct: 82 caaatacaacgggtacacta-atcaataagatcgatgaagtcgcaattaatgcaaaaata 24

                                 
Query: 61 gctaattggaaagcactagtcat 83
          || ||||| |||||| |||||||
Sbjct: 23 gccaattgaaaagcaatagtcat 1

---

>gb|DQ069349.1| Acorus americanus photosystem II reaction center Z protein (psbZ)
          gene, partial cds; chloroplast
          Length = 186

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 71/83 (85%), Gaps = 1/83 (1%)
 Strand = Plus / Minus

                                                                      
Query: 1  caaatacanggggtacactatattactaagactgaggaagtcgcaattaatgcaaaaaca 60
          ||||||||  |||||||||| || | |||||  || |||||||||||||||||||||| |
Sbjct: 82 caaatacaacgggtacacta-atcaataagatcgatgaagtcgcaattaatgcaaaaata 24

                                 
Query: 61 gctaattggaaagcactagtcat 83
          || ||||| |||||| |||||||
Sbjct: 23 gccaattgaaaagcaatagtcat 1

---

>gb|AY727488.1| Minuartia uniflora PsbZ (psbZ) gene, complete cds; and tRNA-Gly
           (trnG) gene, complete sequence; chloroplast
          Length = 1018

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 75/90 (83%), Gaps = 5/90 (5%)
 Strand = Plus / Minus

                                                                       
Query: 27  taagactgaggaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcatatt 86
           ||||| ||| ||||| || |||||||| |||||||| |||||||||||  |||||||| |
Sbjct: 363 taagattgatgaagtagcgattaatgccaaaacagccaattggaaagctatagtcatact 304

                                         
Query: 87  -----tctaatcctccaagctaccatcaaa 111
                |||||||||||||||||||| ||||
Sbjct: 303 tataatctaatcctccaagctaccaacaaa 274

---

>gb|M27309.1|PEACPD2 Pisum sativum D2 photosystem II protein and 44 kd photosystem II
            protein genes, complete cds; tRNA-Ser gene, complete
            sequence; and unknown gene; chloroplast genes for
            chloroplast products
          Length = 4078

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                 
Query: 44   caattaatgcaaaaacagctaattggaaagcactagtcatatttctaatcctc 96
            ||||||||||||||||||||||||| || ||| ||||||| |||  |||||||
Sbjct: 3606 caattaatgcaaaaacagctaattgaaacgcaatagtcatgtttagaatcctc 3554



 Score = 42.1 bits (21), Expect = 0.81
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 177  gggtttaatcatgaatccattgatt 201
            |||||| ||||||||||||||||||
Sbjct: 3461 gggttttatcatgaatccattgatt 3437

---

>gb|DQ069350.1| Ginkgo biloba photosystem II reaction center Z protein (psbZ)
          gene, partial cds; chloroplast
          Length = 186

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                   
Query: 43 gcaattaatgcaaaaacagctaattggaaagcactagtcat 83
          |||||||||||||| |||||  ||||||||||| |||||||
Sbjct: 41 gcaattaatgcaaacacagccgattggaaagcaatagtcat 1

---

>gb|AY337658.1| Freycinetia funicularis isolate Sp_16 chloroplast trnS-ycf9
           intergenic spacer, complete sequence
          Length = 473

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                    
Query: 43  gcaattaatgcaaaaacagctaattggaaagcactagtcat 83
           |||||||||||||| |||||  ||||||||||| |||||||
Sbjct: 377 gcaattaatgcaaacacagccgattggaaagcaatagtcat 337

---

>gb|AY337657.1| Freycinetia angustissima isolate Sp_15 chloroplast trnS-ycf9
           intergenic spacer, complete sequence
          Length = 473

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                    
Query: 43  gcaattaatgcaaaaacagctaattggaaagcactagtcat 83
           |||||||||||||| |||||  ||||||||||| |||||||
Sbjct: 377 gcaattaatgcaaacacagccgattggaaagcaatagtcat 337

---

>gb|AY337655.1| Freycinetia cumingiana isolate Sp_13 chloroplast trnS-ycf9
           intergenic spacer, complete sequence
          Length = 473

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                    
Query: 43  gcaattaatgcaaaaacagctaattggaaagcactagtcat 83
           |||||||||||||| |||||  ||||||||||| |||||||
Sbjct: 375 gcaattaatgcaaacacagccgattggaaagcaatagtcat 335

---

>gb|AY228468.1| Pinus Koraiensis chloroplast, complete genome
          Length = 116866

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                      
Query: 43    gcaattaatgcaaaaacagctaattggaaagcactagtcat 83
             |||||||||||||| |||||  ||||||||||| |||||||
Sbjct: 77434 gcaattaatgcaaacacagccgattggaaagcaatagtcat 77474

---

>dbj|AB116593.1| Cycas panzhihuaensis chloroplast DNA, intergenic spacer region,
           partial sequence
          Length = 669

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                    
Query: 43  gcaattaatgcaaaaacagctaattggaaagcactagtcat 83
           |||||||||||||| || || |||||||||||| |||||||
Sbjct: 313 gcaattaatgcaaacacggccaattggaaagcaatagtcat 353

---

>dbj|AB116592.1| Cycas taitungensis chloroplast DNA, intergenic spacer region,
           partial sequence
          Length = 669

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                    
Query: 43  gcaattaatgcaaaaacagctaattggaaagcactagtcat 83
           |||||||||||||| || || |||||||||||| |||||||
Sbjct: 313 gcaattaatgcaaacacggccaattggaaagcaatagtcat 353

---

>dbj|AB101678.2| Cycas revoluta chloroplast gene for tRNA-Ser, intergenic spacer
           region, north type
          Length = 669

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                    
Query: 43  gcaattaatgcaaaaacagctaattggaaagcactagtcat 83
           |||||||||||||| || || |||||||||||| |||||||
Sbjct: 313 gcaattaatgcaaacacggccaattggaaagcaatagtcat 353

---

>dbj|AB100596.2| Cycas revoluta chloroplast gene for tRNA-Ser, intergenic spacer
           region, south type
          Length = 669

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                    
Query: 43  gcaattaatgcaaaaacagctaattggaaagcactagtcat 83
           |||||||||||||| || || |||||||||||| |||||||
Sbjct: 313 gcaattaatgcaaacacggccaattggaaagcaatagtcat 353

---

>dbj|AP005672.1| Physcomitrella patens subsp. patens chloroplast DNA, complete genome
          Length = 122890

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                      
Query: 43    gcaattaatgcaaaaacagctaattggaaagcactagtcat 83
             |||||||||||||| ||||| || ||||||||| |||||||
Sbjct: 41594 gcaattaatgcaaacacagcgaactggaaagcaatagtcat 41634

---

>dbj|D17510.1|PINCPTRPG Pinus thunbergii chloroplast DNA, complete sequence
          Length = 119707

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                      
Query: 43    gcaattaatgcaaaaacagctaattggaaagcactagtcat 83
             |||||||||||||| |||||  ||||||||||| |||||||
Sbjct: 79537 gcaattaatgcaaacacagccgattggaaagcaatagtcat 79577

---

>dbj|AB087438.1| Anthoceros formosae chloroplast psbZ mRNA for photosystem II
          Z-protein, complete cds
          Length = 235

 Score = 48.1 bits (24), Expect = 0.013
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                          
Query: 37 gaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcata 84
          ||||| |||||||||||||| ||||| || || |||||| ||||||||
Sbjct: 52 gaagtggcaattaatgcaaacacagccaactgaaaagcaatagtcata 5

---

>dbj|AB086179.1| Anthoceros formosae chloroplast DNA, complete genome
          Length = 161162

 Score = 48.1 bits (24), Expect = 0.013
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                             
Query: 37    gaagtcgcaattaatgcaaaaacagctaattggaaagcactagtcata 84
             ||||| |||||||||||||| ||||| || || |||||| ||||||||
Sbjct: 53141 gaagtggcaattaatgcaaacacagccaactgaaaagcaatagtcata 53094

---

>gb|AY178864.1| Adiantum capillus-veneris chloroplast, complete genome
          Length = 150568

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                       
Query: 43    gcaattaatgcaaaaacagctaattggaaagcactagtcata 84
             |||||||||||||| | ||| ||||| |||||| ||||||||
Sbjct: 30555 gcaattaatgcaaataaagcaaattgaaaagcagtagtcata 30596

---

>gb|AC161808.8| Mus musculus chromosome 5, clone RP24-386J15, complete sequence
          Length = 184815

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 195   attgattcttctctttaattaa 216
             ||||||||||||||||||||||
Sbjct: 54022 attgattcttctctttaattaa 54001

---

>gb|AY337656.1| Freycinetia javanica isolate Sp_14 chloroplast trnS-ycf9 intergenic
           spacer, complete sequence
          Length = 472

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 43  gcaattaatgcaaaaacagctaattggaaagcactagtcat 83
           |||||||||||||| |||||  ||||||||||  |||||||
Sbjct: 375 gcaattaatgcaaacacagccgattggaaagcnatagtcat 335

---

>emb|X04465.1|CHMPXX Marchantia polymorpha chloroplast genome DNA
          Length = 121024

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                       
Query: 43    gcaattaatgcaaaaacagctaattggaaagcactagtcata 84
             ||||||| |||||| ||||| |||||||||||  ||||||||
Sbjct: 41687 gcaattagtgcaaacacagccaattggaaagctatagtcata 41646

---

>emb|X01647.1|CHMPTRN Marchantia polymorpha chloroplast DNA for tRNA-Ser(UGA),
            tRNA-Gly(GCC), tRNA-Met(CAU), ORF701, ORF702 and ORF703
          Length = 3381

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                      
Query: 43   gcaattaatgcaaaaacagctaattggaaagcactagtcata 84
            ||||||| |||||| ||||| |||||||||||  ||||||||
Sbjct: 1909 gcaattagtgcaaacacagccaattggaaagctatagtcata 1868

---

>gb|AC008218.5| Drosophila melanogaster, chromosome 3R, region 99B-99B, BAC clone
             BACR10L12, complete sequence
          Length = 178791

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 208   tttaattaaaatttattactta 229
             ||||||||||||||||||||||
Sbjct: 80926 tttaattaaaatttattactta 80905

---

>gb|AC007856.7|AC007856 Drosophila melanogaster, chromosome 3R, region 99B-99B, BAC clone
              BACR05L03, complete sequence
          Length = 175124

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 208    tttaattaaaatttattactta 229
              ||||||||||||||||||||||
Sbjct: 129109 tttaattaaaatttattactta 129088

---

>emb|CT573019.12| Mouse DNA sequence from clone RP24-94G12 on chromosome 14, complete
             sequence
          Length = 136188

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 208   tttaattaaaatttattactta 229
             ||||||||||||||||||||||
Sbjct: 88938 tttaattaaaatttattactta 88917

---

>gb|AE003770.2| Drosophila melanogaster chromosome 3R, section 108 of 118 of the complete
              sequence
          Length = 224264

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 208    tttaattaaaatttattactta 229
              ||||||||||||||||||||||
Sbjct: 113174 tttaattaaaatttattactta 113153

---

>gb|AC148876.2| Pan troglodytes BAC clone CH251-50I16 from Y, complete sequence
          Length = 182194

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 209   ttaattaaaatttattactta 229
             |||||||||||||||||||||
Sbjct: 37295 ttaattaaaatttattactta 37315

---

>gb|AC146453.3| Pan troglodytes BAC clone CH251-510F17 from Y, complete sequence
          Length = 215114

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 209   ttaattaaaatttattactta 229
             |||||||||||||||||||||
Sbjct: 86736 ttaattaaaatttattactta 86716

---

>gb|AC147675.2| Pan troglodytes BAC clone CH251-6P20 from Y, complete sequence
          Length = 166567

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 209    ttaattaaaatttattactta 229
              |||||||||||||||||||||
Sbjct: 132430 ttaattaaaatttattactta 132450

---

>gb|AE014822.1| Plasmodium falciparum 3D7 chromosome 14 section 7 of 13 of the complete
             sequence
          Length = 253924

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 208   tttaattaaaatttattactt 228
             |||||||||||||||||||||
Sbjct: 56679 tttaattaaaatttattactt 56659

---

>emb|Z97335.2|ATFCA0 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 0
          Length = 200576

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 200   ttcttctctttaattaaaatt 220
             |||||||||||||||||||||
Sbjct: 47889 ttcttctctttaattaaaatt 47909

---

>emb|AL161537.2|ATCHRIV37 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 37
          Length = 199667

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 200    ttcttctctttaattaaaatt 220
              |||||||||||||||||||||
Sbjct: 182104 ttcttctctttaattaaaatt 182124

---

>dbj|BS000655.1| Pan troglodytes chromosome Y clone:PTB-215M20, complete sequences
          Length = 152092

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 209   ttaattaaaatttattactta 229
             |||||||||||||||||||||
Sbjct: 49403 ttaattaaaatttattactta 49423

---

>dbj|BS000615.1| Pan troglodytes chromosome Y clone:PTBY-009P07, complete sequences
          Length = 105898

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 209   ttaattaaaatttattactta 229
             |||||||||||||||||||||
Sbjct: 53778 ttaattaaaatttattactta 53798

---

>dbj|BS000609.1| Pan troglodytes chromosome Y clone:PTB-217K15, complete sequences
          Length = 146625

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 209   ttaattaaaatttattactta 229
             |||||||||||||||||||||
Sbjct: 54992 ttaattaaaatttattactta 54972

---

>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 209      ttaattaaaatttattactta 229
                |||||||||||||||||||||
Sbjct: 21943358 ttaattaaaatttattactta 21943378



 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 209      ttaattaaaatttattactta 229
                |||||||||||||||||||||
Sbjct: 21645394 ttaattaaaatttattactta 21645374


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,149,512
Number of Sequences: 3902068
Number of extensions: 3149512
Number of successful extensions: 73492
Number of sequences better than 10.0: 272
Number of HSP's better than 10.0 without gapping: 273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72559
Number of HSP's gapped (non-prelim): 837
length of query: 247
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 225
effective length of database: 17,147,199,772
effective search space: 3858119948700
effective search space used: 3858119948700
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

---