ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd23c14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|BX908780.7| Zebrafish DNA sequence from clone CH211-198K9 in... 40 1.8
2emb|AL928772.8| Mouse DNA sequence from clone RP23-247I15 on chr... 40 1.8
3gb|AC099518.3| Homo sapiens chromosome 16 clone RP11-626G11, com... 40 1.8
4gb|AC146595.2| Mus musculus BAC clone RP24-164G18 from chromosom... 40 1.8
5gb|AF040648.2| Caenorhabditis elegans fosmid H19M22, complete se... 38 7.2

>emb|BX908780.7| Zebrafish DNA sequence from clone CH211-198K9 in linkage group 1,
              complete sequence
          Length = 199679

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 8      tactactactacatnatgataat 30
              |||||||||||||| ||||||||
Sbjct: 134312 tactactactacataatgataat 134334



to top

>emb|AL928772.8| Mouse DNA sequence from clone RP23-247I15 on chromosome 4 Contains the 3'
              end of a novel gene and a novel gene, complete sequence
          Length = 174731

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 123    gaaaaactgaagctgcctgc 142
              ||||||||||||||||||||
Sbjct: 146098 gaaaaactgaagctgcctgc 146117



to top

>gb|AC099518.3| Homo sapiens chromosome 16 clone RP11-626G11, complete sequence
          Length = 216264

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 123    gaaaaactgaagctgcctgc 142
              ||||||||||||||||||||
Sbjct: 168486 gaaaaactgaagctgcctgc 168467



to top

>gb|AC146595.2| Mus musculus BAC clone RP24-164G18 from chromosome 17, complete
             sequence
          Length = 132103

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 122   agaaaaactgaagctgcctg 141
             ||||||||||||||||||||
Sbjct: 20585 agaaaaactgaagctgcctg 20604



to top

>gb|AF040648.2| Caenorhabditis elegans fosmid H19M22, complete sequence
          Length = 44699

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 110   tctaataatnggagaaaaactg 131
             ||||||||| ||||||||||||
Sbjct: 18426 tctaataatcggagaaaaactg 18405


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 855,308
Number of Sequences: 3902068
Number of extensions: 855308
Number of successful extensions: 53230
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 53222
Number of HSP's gapped (non-prelim): 8
length of query: 150
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 129
effective length of database: 17,151,101,840
effective search space: 2212492137360
effective search space used: 2212492137360
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
to top