Clone Name | rbasd22n12 |
---|---|
Clone Library Name | barley_pub |
>gb|AY954974.1| Triticum aestivum cultivar 99L2 RAPD marker OPO10a genomic sequence Length = 897 Score = 63.9 bits (32), Expect = 5e-07 Identities = 66/76 (86%), Gaps = 1/76 (1%) Strand = Plus / Minus Query: 265 gtttgggtcatccggacacaaaagctagcccaacgagatgacccaaacggacgcgcgcgt 324 ||||||||||||||||||||||| ||||||||| | ||||||||||||| | ||| Sbjct: 691 gtttgggtcatccggacacaaaactcagcccaacggggcgacccaaacggacac-aacgt 633 Query: 325 ccgcctgctgtccgtt 340 |||||||||||||||| Sbjct: 632 ccgcctgctgtccgtt 617
>gb|AC124103.5| Mus musculus chromosome 15, clone RP24-271M13, complete sequence Length = 177753 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Minus Query: 34 aaaaatgaataaatacaagtagatgg 59 |||||||||||||| ||||||||||| Sbjct: 47439 aaaaatgaataaattcaagtagatgg 47414
>gb|AC007202.3|T8K14 Arabidopsis thaliana chromosome 1 BAC T8K14 sequence, complete sequence Length = 80374 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 134 tcctttccacgtatgactaatt 155 |||||||||||||||||||||| Sbjct: 67082 tcctttccacgtatgactaatt 67061
>gb|AY152830.1| Felis catus clone BAC 463h11 major histocompatiblity complex classical class II region, partial sequence Length = 141214 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 34 aaaaatgaataaatacaagta 54 ||||||||||||||||||||| Sbjct: 1813 aaaaatgaataaatacaagta 1833
>gb|AE017143.1| Haemophilus ducreyi strain 35000HP complete genome Length = 1698955 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 255 cattttttccgtttgggtcat 275 ||||||||||||||||||||| Sbjct: 126953 cattttttccgtttgggtcat 126933
>gb|AC152926.1| Tribolium castaneum BAC T.cast_C1K1 (Clemson University Genomics Institute Tribolium castaneum BAC Library (Red Flour Beetle)) complete sequence Length = 130658 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 252 atccattttttccgtttggg 271 |||||||||||||||||||| Sbjct: 37818 atccattttttccgtttggg 37837
>gb|AC156645.2| Mus musculus BAC clone RP23-59I22 from chromosome 12, complete sequence Length = 247201 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 209 acatatttcccatggaggaaatga 232 ||||| |||||||||||||||||| Sbjct: 113578 acataattcccatggaggaaatga 113601
>emb|Z69838.1|HSV1164A6 Human DNA sequence from clone GHc-1164A6 on chromosome X, complete sequence Length = 29952 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 cccggctcaatatcctacta 105 |||||||||||||||||||| Sbjct: 3963 cccggctcaatatcctacta 3982
>gb|AY043292.1| Tribolium castaneum strain GA-2 HOMC gene cluster, partial sequence Length = 110623 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 252 atccattttttccgtttggg 271 |||||||||||||||||||| Sbjct: 8224 atccattttttccgtttggg 8205
>gb|AY158535.1| HIV-1 strain 98ZA528 clone 6 from South Africa, complete genome Length = 8964 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 atggaggaaatgagagcaac 239 |||||||||||||||||||| Sbjct: 6902 atggaggaaatgagagcaac 6921
>gb|AC009251.6|AC009251 Drosophila melanogaster, chromosome 2L, region 36D-36D, BAC clone BACR48K02, complete sequence Length = 178530 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 tctcttcccctacatatttc 217 |||||||||||||||||||| Sbjct: 81683 tctcttcccctacatatttc 81664
>gb|AC022968.9| Homo sapiens chromosome 18, clone RP11-421N8, complete sequence Length = 187277 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 aaaaatgaataaatacaagt 53 |||||||||||||||||||| Sbjct: 100827 aaaaatgaataaatacaagt 100808
>gb|AE003655.3| Drosophila melanogaster chromosome 2L, section 64 of 83 of the complete sequence Length = 253771 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 tctcttcccctacatatttc 217 |||||||||||||||||||| Sbjct: 209308 tctcttcccctacatatttc 209289
>dbj|AP001122.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-744N12, complete sequence Length = 217393 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 400 aaaactgcacacttccctca 419 |||||||||||||||||||| Sbjct: 86183 aaaactgcacacttccctca 86164
>gb|AC174474.1| Pan troglodytes chromosome X clone CH251-58H10 map human ortholog p11.4, complete sequence Length = 159881 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 33 gaaaaatgaataaatacaagtaga 56 |||||||||||||||||| ||||| Sbjct: 125219 gaaaaatgaataaatacaggtaga 125242
>emb|AL121578.1|HSXKSRPXR Homo sapiens chromosome X sequence from 12 cosmids, map Xp21.1 region DXS709-SRPX, complete sequence Length = 337101 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 33 gaaaaatgaataaatacaagtaga 56 |||||||||||||||||| ||||| Sbjct: 275833 gaaaaatgaataaatacaggtaga 275856 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,091,260 Number of Sequences: 3902068 Number of extensions: 4091260 Number of successful extensions: 85202 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 85167 Number of HSP's gapped (non-prelim): 34 length of query: 494 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 472 effective length of database: 17,147,199,772 effective search space: 8093478292384 effective search space used: 8093478292384 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)