>EBNA3_EBV (P12977) Epstein-Barr nuclear antigen 3 (EBV nuclear antigen 3)|
           (EBNA-3) (EBNA-3A)
          Length = 812

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 30/83 (36%), Positives = 38/83 (45%), Gaps = 11/83 (13%)
 Frame = +2

Query: 179 GRWVP--WTGQGEPPSRGACPVRAGCQSLGAS*GNLQIQNHPRNLSLPHIPA*MMAMHL- 349
           G WVP  W  QG PPS+G   V+    +LG +   L   NHP    +P  PA +   HL 
Sbjct: 648 GPWVPEQWMFQGAPPSQGTDVVQHQLDALGYT---LHGLNHP---GVPVSPA-VNQYHLS 700

Query: 350 -GAFG-------TWRGSGRRDPC 394
             AFG       +  GS   +PC
Sbjct: 701 QAAFGLPIDEDESGEGSDTSEPC 723

>RNAS1_MYOGL (Q9WUS1) Ribonuclease pancreatic precursor (EC 3.1.27.5) (RNase 1)|
           (RNase A)
          Length = 156

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -1

Query: 244 CAYRTCTTGWRFALACPRDPSAPVSIDST 158
           CAYRT     R  +AC  DPS PV  D +
Sbjct: 123 CAYRTTQKVKRIVVACEGDPSVPVHYDGS 151

>ZEP2_HUMAN (P31629) Human immunodeficiency virus type I enhancer-binding protein|
            2 (HIV-EP2) (MHC-binding protein 2) (MBP-2)
          Length = 2446

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -3

Query: 296  DDFG-FEDYLNLPQDSDSLRVPDMHHGMEVRLGLSKGPICP 177
            D+FG   ++L +P  S SL VP  HH  E+R   S+   CP
Sbjct: 998  DEFGKHSEFLTVPAGSYSLSVPGHHHQKEMRRCSSEQMPCP 1038

>TREY_MYCTU (Q10768) Putative maltooligosyl trehalose synthase (EC 5.4.99.15)|
           ((1,4)-alpha-D-glucan 1-alpha-D-glucosylmutase)
          Length = 765

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 36/132 (27%), Positives = 55/132 (41%), Gaps = 6/132 (4%)
 Frame = -3

Query: 563 ELGETHDVLRFGVNDSVRG-----DLAPAHPVQAAIHKESKFWDDKKKFGTEAIYGSAFN 399
           ELG +  + R       RG     D+ P+H V     +++ +W D  KFG  + Y   F+
Sbjct: 69  ELGGSDGLARLSAAARSRGMGLIVDIVPSH-VGVGKPEQNAWWWDVLKFGRSSAYAEFFD 127

Query: 398 IRKDL-DAQILSRFQRPPGALPSSMLGYEAMTGSLDDFGFEDYLNLPQDSDSLRVPDMHH 222
           I  +L D +I+         LP  +LG ++           D  NL  D D LR+ D+  
Sbjct: 128 IDWELGDGRII---------LP--LLGSDS-----------DVANLRVDGDLLRLGDLAL 165

Query: 221 GMEVRLGLSKGP 186
            +    G   GP
Sbjct: 166 PVAPGSGDGTGP 177

>RNAS2_AOTTR (O18937) Nonsecretory ribonuclease precursor (EC 3.1.27.5)|
           (Ribonuclease US) (Eosinophil-derived neurotoxin) (RNase
           UpI-2) (Ribonuclease 2) (RNase 2)
          Length = 158

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
 Frame = -1

Query: 343 HCHHLCWDMRQ*QVPWMILDLKITLTCPKTLTACAYRTCTTGWRFALAC--------PRD 188
           +CHH      + QVP    +L    T P T+T C Y +      + +AC        P+ 
Sbjct: 97  NCHH-----SRVQVPLTYCNL----TGPPTITNCVYSSTQANMFYVVACDNRDQRDPPQY 147

Query: 187 PSAPVSIDST 158
           P  PV +D+T
Sbjct: 148 PVVPVHLDTT 157

>MTFA_PSEPK (Q88L23) Putative RNA 2'-O-ribose methyltransferase mtfA (EC|
           2.1.1.-)
          Length = 354

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
 Frame = +3

Query: 96  QPSDWYRCWTGSTTYHKTN---TWVESIETGADGSLGQAKANLHPVVHVRYAQAVRVLGQ 266
           QP DW  C         T+   TW+       +G   +A  NL   +  RYA+  R+L +
Sbjct: 263 QPVDWMVCDIVEKPARTTSLIETWL------GEGLCREAVVNLKLPMKQRYAEVRRLLDR 316

Query: 267 VKVIFKSKIIQGTCHC 314
           ++  FK++ I+ +  C
Sbjct: 317 MEATFKARKIRVSIAC 332

>DPO3_MYCGE (P47277) DNA polymerase III polC-type (EC 2.7.7.7) (PolIII)|
          Length = 1451

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -3

Query: 473 IHKESKFWDDKKKFGTEAIYGSAFNIRKD 387
           IH   KF++  KK+  +AIYG  FN+  D
Sbjct: 370 IHIYPKFYEVAKKYDLKAIYGLEFNLTDD 398

>RNAS2_SAGOE (P47786) Nonsecretory ribonuclease precursor (EC 3.1.27.5)|
           (Ribonuclease US) (Eosinophil-derived neurotoxin) (RNase
           UpI-2) (Ribonuclease 2) (RNase 2)
          Length = 158

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 8/46 (17%)
 Frame = -1

Query: 271 LTCPKTLTACAYRTCTTGWRFALAC----PRDPS----APVSIDST 158
           LT P+T++ C Y +      + +AC    PRDP      PV +D+T
Sbjct: 112 LTGPQTISNCVYSSTQANMFYVVACDNRDPRDPPQYPVVPVHLDTT 157

>RPOA_NOCFA (Q5Z1K9) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP|
           alpha subunit) (Transcriptase alpha chain) (RNA
           polymerase alpha subunit)
          Length = 352

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 19/54 (35%), Positives = 28/54 (51%)
 Frame = -3

Query: 446 DKKKFGTEAIYGSAFNIRKDLDAQILSRFQRPPGALPSSMLGYEAMTGSLDDFG 285
           D + FG ++I      ++  L A  LS    P    PSS++GY+A TG+  D G
Sbjct: 285 DIRNFGQKSID----EVKVKLHALGLSLKDSPASFDPSSVVGYDASTGTWSDSG 334

>CCDA_BACHD (Q9KDL8) Cytochrome c-type biogenesis protein ccdA|
          Length = 238

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
 Frame = +1

Query: 388 SLRMLKADP*MASVPN---FFLSSQNLDSLWMAAWTGCAGARSPRTLSLTPKRSTSWVSP 558
           S+RML ++  + + P     F +S  +  L+   WT C G      L L    +T W   
Sbjct: 106 SIRMLLSEKRLQAKPRQSASFANSVLIGFLFATGWTPCIGLVLGAILVLAGDANTMWSGM 165

Query: 559 SSFFAMNPPLAI 594
           S  F  +  LAI
Sbjct: 166 SMLFVYSMGLAI 177


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,513,056
Number of Sequences: 219361
Number of extensions: 1709857
Number of successful extensions: 5091
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5091
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5710231900
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)