ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd23c09 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK069830.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030M09, full insert sequence Length = 778 Score = 402 bits (203), Expect = e-109 Identities = 376/433 (86%), Gaps = 3/433 (0%) Strand = Plus / Minus Query: 163 aatcaattgaaactggggcagatgggtcccttggacaggccaaggcgaacctccatcccg 222 |||||||||||||| ||||| | |||||||| |||| || |||||||||||||| ||| Sbjct: 494 aatcaattgaaactagggcaaacaggtccctttgacaaaccgaggcgaacctccattccg 435 Query: 223 tggtgcatgtccggtacgcgcaggctgtcagagtcttggggcaagttaaggtaatcttca 282 ||||||||||| || | || | ||| ||||| ||||||||||||||||| ||||||||| Sbjct: 434 tggtgcatgtcgggagcacggaagctttcagaatcttggggcaagttaagataatcttca 375 Query: 283 aatccaaaatcatccaaggaacctgtcattgcctcatatcccagcatagatgatggcaat 342 || ||||||||||| |||||||| |||| |||||||||||| ||||||||||| |||||| Sbjct: 374 aacccaaaatcatctaaggaaccagtcagtgcctcatatcctagcatagatgacggcaat 315 Query: 343 gcacctgggggcctttggaacctggagaggatctgggcgtcgagatccttgcggatgttg 402 ||||| ||||||||||||||| |||||||||| ||||| || |||||||||||||||||| Sbjct: 314 gcaccagggggcctttggaacttggagaggatttgggcatcaagatccttgcggatgttg 255 Query: 403 aaggcggatccgtagatggcctcggtcccgaacttcttcttgtcgtcccagaacttggac 462 |||||||||||||||||||| || | |||||| |||||||||| |||||||||||| Sbjct: 254 aaggcggatccgtagatggcttccgcgccgaacctcttcttgtccgcccagaacttggca 195 Query: 463 tccttgtggatggcggcctggacggggtgcgccggcgcgaggtcgccgcggacgctgtcg 522 |||||||||| | |||||||| ||||||| |||||||||||| || |||||||||| Sbjct: 194 tccttgtggacgctggcctggagcgggtgcggcggcgcgaggtcccccttgacgctgtcg 135 Query: 523 ttgacgccgaagcggagcacgtcgtgggtctcgccgagctccttcttcgccatgaatccg 582 ||||||||||||||||| ||||||||| || |||||| |||||||||| ||| | ||| Sbjct: 134 ttgacgccgaagcggaggacgtcgtggttcccgccgatctccttcttcaccacg---ccg 78 Query: 583 ccgctcgccatcg 595 ||||||||||||| Sbjct: 77 ccgctcgccatcg 65
>ref|XM_463066.1| Oryza sativa (japonica cultivar-group), mRNA Length = 846 Score = 361 bits (182), Expect = 2e-96 Identities = 314/358 (87%) Strand = Plus / Minus Query: 213 ctccatcccgtggtgcatgtccggtacgcgcaggctgtcagagtcttggggcaagttaag 272 |||||| |||||||||||||| || | | | ||||||||| |||||||||||||| || Sbjct: 378 ctccattccgtggtgcatgtctggagcatggaagctgtcagaatcttggggcaagttgag 319 Query: 273 gtaatcttcaaatccaaaatcatccaaggaacctgtcattgcctcatatcccagcataga 332 ||||||||||| || ||||||||||||||||| |||| ||||| ||||| |||||||| Sbjct: 318 ataatcttcaaacccgaaatcatccaaggaaccagtcagcgcctcgtatcctagcataga 259 Query: 333 tgatggcaatgcacctgggggcctttggaacctggagaggatctgggcgtcgagatcctt 392 ||||||||||||||| ||||||||||||||| |||||||||| ||||| ||||||||||| Sbjct: 258 tgatggcaatgcaccagggggcctttggaacttggagaggatttgggcatcgagatcctt 199 Query: 393 gcggatgttgaaggcggatccgtagatggcctcggtcccgaacttcttcttgtcgtccca 452 |||||||||||| ||||||||||||||||| || | ||||||| ||||||| || |||| Sbjct: 198 gcggatgttgaaagcggatccgtagatggcttccgccccgaacctcttcttatccgccca 139 Query: 453 gaacttggactccttgtggatggcggcctggacggggtgcgccggcgcgaggtcgccgcg 512 |||||||| ||||||||||| || |||||||| |||||| ||||||||||||||| Sbjct: 138 gaacttggcctccttgtggacggtggcctggatcgggtgctgcggcgcgaggtcgccctt 79 Query: 513 gacgctgtcgttgacgccgaagcggagcacgtcgtgggtctcgccgagctccttcttc 570 |||||||| ||||||||||||| |||||||||||||| ||||||||| |||||||||| Sbjct: 78 gacgctgttgttgacgccgaagaggagcacgtcgtggttctcgccgacctccttcttc 21
>dbj|AK072342.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023052N08, full insert sequence Length = 3232 Score = 333 bits (168), Expect = 4e-88 Identities = 290/330 (87%), Gaps = 3/330 (0%) Strand = Plus / Minus Query: 266 agttaaggtaatcttcaaatccaaaatcatccaaggaacctgtcattgcctcatatccca 325 ||||||| ||||||||||| ||||||||||| |||||||| |||| |||||||||||| | Sbjct: 373 agttaagataatcttcaaacccaaaatcatctaaggaaccagtcagtgcctcatatccta 314 Query: 326 gcatagatgatggcaatgcacctgggggcctttggaacctggagaggatctgggcgtcga 385 |||||||||| ||||||||||| ||||||||||||||| |||||||||| ||||| || | Sbjct: 313 gcatagatgacggcaatgcaccagggggcctttggaacttggagaggatttgggcatcaa 254 Query: 386 gatccttgcggatgttgaaggcggatccgtagatggcctcggtcccgaacttcttcttgt 445 ||||||||||||||||||||||||||||||||||||| || | |||||| ||||||||| Sbjct: 253 gatccttgcggatgttgaaggcggatccgtagatggcttccgcgccgaacctcttcttgt 194 Query: 446 cgtcccagaacttggactccttgtggatggcggcctggacggggtgcgccggcgcgaggt 505 | |||||||||||| ||||||||||| | |||||||| ||||||| ||||||||||| Sbjct: 193 ccgcccagaacttggcctccttgtggacgctggcctggagcgggtgcggcggcgcgaggt 134 Query: 506 cgccgcggacgctgtcgttgacgccgaagcggagcacgtcgtgggtctcgccgagctcct 565 | || |||||||||||||||||||||||||| ||||||||| || |||||| ||||| Sbjct: 133 cccccttgacgctgtcgttgacgccgaagcggacgacgtcgtggttcccgccgatctcct 74 Query: 566 tcttcgccatgaatccgccgctcgccatcg 595 ||||| ||| | |||||||||||||||| Sbjct: 73 tcttcaccacg---ccgccgctcgccatcg 47
>dbj|AK072332.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023038L20, full insert sequence Length = 4792 Score = 333 bits (168), Expect = 4e-88 Identities = 290/330 (87%), Gaps = 3/330 (0%) Strand = Plus / Minus Query: 266 agttaaggtaatcttcaaatccaaaatcatccaaggaacctgtcattgcctcatatccca 325 ||||||| ||||||||||| ||||||||||| |||||||| |||| |||||||||||| | Sbjct: 359 agttaagataatcttcaaacccaaaatcatctaaggaaccagtcagtgcctcatatccta 300 Query: 326 gcatagatgatggcaatgcacctgggggcctttggaacctggagaggatctgggcgtcga 385 |||||||||| ||||||||||| ||||||||||||||| |||||||||| ||||| || | Sbjct: 299 gcatagatgacggcaatgcaccagggggcctttggaacttggagaggatttgggcatcaa 240 Query: 386 gatccttgcggatgttgaaggcggatccgtagatggcctcggtcccgaacttcttcttgt 445 ||||||||||||||||||||||||||||||||||||| || | |||||| ||||||||| Sbjct: 239 gatccttgcggatgttgaaggcggatccgtagatggcttccgcgccgaacctcttcttgt 180 Query: 446 cgtcccagaacttggactccttgtggatggcggcctggacggggtgcgccggcgcgaggt 505 | |||||||||||| ||||||||||| | |||||||| ||||||| ||||||||||| Sbjct: 179 ccgcccagaacttggcctccttgtggacgctggcctggagcgggtgcggcggcgcgaggt 120 Query: 506 cgccgcggacgctgtcgttgacgccgaagcggagcacgtcgtgggtctcgccgagctcct 565 | || |||||||||||||||||||||||||| ||||||||| || |||||| ||||| Sbjct: 119 cccccttgacgctgtcgttgacgccgaagcggacgacgtcgtggttcccgccgatctcct 60 Query: 566 tcttcgccatgaatccgccgctcgccatcg 595 ||||| ||| | |||||||||||||||| Sbjct: 59 tcttcaccacg---ccgccgctcgccatcg 33
>dbj|AK067815.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013118P06, full insert sequence Length = 3020 Score = 333 bits (168), Expect = 4e-88 Identities = 290/330 (87%), Gaps = 3/330 (0%) Strand = Plus / Minus Query: 266 agttaaggtaatcttcaaatccaaaatcatccaaggaacctgtcattgcctcatatccca 325 ||||||| ||||||||||| ||||||||||| |||||||| |||| |||||||||||| | Sbjct: 358 agttaagataatcttcaaacccaaaatcatctaaggaaccagtcagtgcctcatatccta 299 Query: 326 gcatagatgatggcaatgcacctgggggcctttggaacctggagaggatctgggcgtcga 385 |||||||||| ||||||||||| ||||||||||||||| |||||||||| ||||| || | Sbjct: 298 gcatagatgacggcaatgcaccagggggcctttggaacttggagaggatttgggcatcaa 239 Query: 386 gatccttgcggatgttgaaggcggatccgtagatggcctcggtcccgaacttcttcttgt 445 ||||||||||||||||||||||||||||||||||||| || | |||||| ||||||||| Sbjct: 238 gatccttgcggatgttgaaggcggatccgtagatggcttccgcgccgaacctcttcttgt 179 Query: 446 cgtcccagaacttggactccttgtggatggcggcctggacggggtgcgccggcgcgaggt 505 | |||||||||||| ||||||||||| | |||||||| ||||||| ||||||||||| Sbjct: 178 ccgcccagaacttggcctccttgtggacgctggcctggagcgggtgcggcggcgcgaggt 119 Query: 506 cgccgcggacgctgtcgttgacgccgaagcggagcacgtcgtgggtctcgccgagctcct 565 | || |||||||||||||||||||||||||| ||||||||| || |||||| ||||| Sbjct: 118 cccccttgacgctgtcgttgacgccgaagcggacgacgtcgtggttcccgccgatctcct 59 Query: 566 tcttcgccatgaatccgccgctcgccatcg 595 ||||| ||| | |||||||||||||||| Sbjct: 58 tcttcaccacg---ccgccgctcgccatcg 32
>gb|AY105712.1| Zea mays PCO130616 mRNA sequence Length = 981 Score = 329 bits (166), Expect = 6e-87 Identities = 346/406 (85%) Strand = Plus / Minus Query: 165 tcaattgaaactggggcagatgggtcccttggacaggccaaggcgaacctccatcccgtg 224 |||| |||| || |||||||| ||||||||||||| ||||||||||||||||| ||||| Sbjct: 510 tcaactgaagctagggcagataggtcccttggacaaaccaaggcgaacctccattccgtg 451 Query: 225 gtgcatgtccggtacgcgcaggctgtcagagtcttggggcaagttaaggtaatcttcaaa 284 ||||||||| ||| || | | ||||| ||||| |||| |||||| ||||||||||| Sbjct: 450 gtgcatgtcaggttgacggaaaccttcagaatcttgaggcatgttaagataatcttcaaa 391 Query: 285 tccaaaatcatccaaggaacctgtcattgcctcatatcccagcatagatgatggcaatgc 344 ||||||||||| | ||||||||||| |||||||||||| |||| |||||||||||| || Sbjct: 390 accaaaatcatctagggaacctgtcagtgcctcatatccaagcagagatgatggcaaagc 331 Query: 345 acctgggggcctttggaacctggagaggatctgggcgtcgagatccttgcggatgttgaa 404 ||| ||||||||||||||||| |||||||| ||||| |||||||||||||||||||| || Sbjct: 330 accagggggcctttggaaccttgagaggatttgggcatcgagatccttgcggatgttcaa 271 Query: 405 ggcggatccgtagatggcctcggtcccgaacttcttcttgtcgtcccagaacttggactc 464 ||||||||||||||||||||| ||||| |||||||||||||| |||||||||||| ||| Sbjct: 270 ggcggatccgtagatggcctctgtcccaaacttcttcttgtccgcccagaacttggcctc 211 Query: 465 cttgtggatggcggcctggacggggtgcgccggcgcgaggtcgccgcggacgctgtcgtt 524 | |||||| || ||||| ||||||| ||||||||||||| | ||||| | | || Sbjct: 210 cgattggatgctggactggagcgggtgcggcggcgcgaggtcggccttgacgccggcatt 151 Query: 525 gacgccgaagcggagcacgtcgtgggtctcgccgagctccttcttc 570 || |||||||||||| |||||||||||||| || |||| ||||| Sbjct: 150 gaggccgaagcggagggtgtcgtgggtctcgctgatctccctcttc 105
>gb|BT016426.1| Zea mays clone Contig259 mRNA sequence Length = 643 Score = 301 bits (152), Expect = 1e-78 Identities = 317/372 (85%) Strand = Plus / Minus Query: 165 tcaattgaaactggggcagatgggtcccttggacaggccaaggcgaacctccatcccgtg 224 ||||||||| || || ||||| ||||||||||||| ||||||||||||||||| || || Sbjct: 488 tcaattgaagctaggacagataggtcccttggacaaaccaaggcgaacctccattccatg 429 Query: 225 gtgcatgtccggtacgcgcaggctgtcagagtcttggggcaagttaaggtaatcttcaaa 284 ||||||||| ||| || | |||||||| || || |||| |||||| ||||||||||| Sbjct: 428 gtgcatgtcaggttgacggaaactgtcagaatcatgaggcatgttaagataatcttcaaa 369 Query: 285 tccaaaatcatccaaggaacctgtcattgcctcatatcccagcatagatgatggcaatgc 344 |||||||||||||| ||||||||||| |||||| ||||| |||| |||||| ||||| || Sbjct: 368 tccaaaatcatccagggaacctgtcagtgcctcgtatccaagcagagatgacggcaaagc 309 Query: 345 acctgggggcctttggaacctggagaggatctgggcgtcgagatccttgcggatgttgaa 404 ||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||| Sbjct: 308 accagggggcctttggaacctggagaggatttgggcatcgagatccttgcggatgttgag 249 Query: 405 ggcggatccgtagatggcctcggtcccgaacttcttcttgtcgtcccagaacttggactc 464 ||||||||| || ||||| || |||||||||||||||||||| |||||||||||| ||| Sbjct: 248 ggcggatccatatatggcatctgtcccgaacttcttcttgtccgcccagaacttggtctc 189 Query: 465 cttgtggatggcggcctggacggggtgcgccggcgcgaggtcgccgcggacgctgtcgtt 524 | ||||||| | ||||| ||||||| ||| ||||||||| | ||||| | |||| Sbjct: 188 cgattggatggtagactggagcgggtgcggcggggcgaggtcggctttgacgccggcgtt 129 Query: 525 gacgccgaagcg 536 || ||||||||| Sbjct: 128 gatgccgaagcg 117
>gb|AY104566.1| Zea mays PCO130617 mRNA sequence Length = 1029 Score = 297 bits (150), Expect = 2e-77 Identities = 264/302 (87%) Strand = Plus / Minus Query: 165 tcaattgaaactggggcagatgggtcccttggacaggccaaggcgaacctccatcccgtg 224 ||||||||| || || ||||| ||||||||||||| ||||||||||||||||| || || Sbjct: 777 tcaattgaagctaggacagataggtcccttggacaaaccaaggcgaacctccattccatg 718 Query: 225 gtgcatgtccggtacgcgcaggctgtcagagtcttggggcaagttaaggtaatcttcaaa 284 ||||||||| ||| || | |||||||| || || |||| |||||| ||||||||||| Sbjct: 717 gtgcatgtcaggttgacggaaactgtcagaatcatgaggcatgttaagataatcttcaaa 658 Query: 285 tccaaaatcatccaaggaacctgtcattgcctcatatcccagcatagatgatggcaatgc 344 |||||||||||||| ||||||||||| |||||| ||||| |||| |||||| ||||| || Sbjct: 657 tccaaaatcatccagggaacctgtcagtgcctcgtatccaagcagagatgacggcaaagc 598 Query: 345 acctgggggcctttggaacctggagaggatctgggcgtcgagatccttgcggatgttgaa 404 ||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||| Sbjct: 597 accagggggcctttggaacctggagaggatttgggcatcgagatccttgcggatgttgag 538 Query: 405 ggcggatccgtagatggcctcggtcccgaacttcttcttgtcgtcccagaacttggactc 464 ||||||||| || ||||| || |||||||||||||||||||| |||||||||||| ||| Sbjct: 537 ggcggatccatatatggcatctgtcccgaacttcttcttgtccgcccagaacttggtctc 478 Query: 465 ct 466 || Sbjct: 477 ct 476
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 139 bits (70), Expect = 1e-29 Identities = 94/102 (92%) Strand = Plus / Plus Query: 266 agttaaggtaatcttcaaatccaaaatcatccaaggaacctgtcattgcctcatatccca 325 ||||||| ||||||||||| ||||||||||| |||||||| |||| |||||||||||| | Sbjct: 34172866 agttaagataatcttcaaacccaaaatcatctaaggaaccagtcagtgcctcatatccta 34172925 Query: 326 gcatagatgatggcaatgcacctgggggcctttggaacctgg 367 |||||||||| ||||||||||| ||||||||||||||||||| Sbjct: 34172926 gcatagatgacggcaatgcaccagggggcctttggaacctgg 34172967 Score = 139 bits (70), Expect = 1e-29 Identities = 94/102 (92%) Strand = Plus / Plus Query: 266 agttaaggtaatcttcaaatccaaaatcatccaaggaacctgtcattgcctcatatccca 325 ||||||| ||||||||||| ||||||||||| |||||||| |||| |||||||||||| | Sbjct: 34143149 agttaagataatcttcaaacccaaaatcatctaaggaaccagtcagtgcctcatatccta 34143208 Query: 326 gcatagatgatggcaatgcacctgggggcctttggaacctgg 367 |||||||||| ||||||||||| ||||||||||||||||||| Sbjct: 34143209 gcatagatgacggcaatgcaccagggggcctttggaacctgg 34143250 Score = 139 bits (70), Expect = 1e-29 Identities = 94/102 (92%) Strand = Plus / Plus Query: 266 agttaaggtaatcttcaaatccaaaatcatccaaggaacctgtcattgcctcatatccca 325 ||||||| ||||||||||| ||||||||||| |||||||| |||| |||||||||||| | Sbjct: 34118597 agttaagataatcttcaaacccaaaatcatctaaggaaccagtcagtgcctcatatccta 34118656 Query: 326 gcatagatgatggcaatgcacctgggggcctttggaacctgg 367 |||||||||| ||||||||||| ||||||||||||||||||| Sbjct: 34118657 gcatagatgacggcaatgcaccagggggcctttggaacctgg 34118698 Score = 139 bits (70), Expect = 1e-29 Identities = 94/102 (92%) Strand = Plus / Plus Query: 266 agttaaggtaatcttcaaatccaaaatcatccaaggaacctgtcattgcctcatatccca 325 ||||||| ||||||||||| ||||||||||| |||||||| |||| |||||||||||| | Sbjct: 34095410 agttaagataatcttcaaacccaaaatcatctaaggaaccagtcagtgcctcatatccta 34095469 Query: 326 gcatagatgatggcaatgcacctgggggcctttggaacctgg 367 |||||||||| ||||||||||| ||||||||||||||||||| Sbjct: 34095470 gcatagatgacggcaatgcaccagggggcctttggaacctgg 34095511 Score = 115 bits (58), Expect = 2e-22 Identities = 91/102 (89%) Strand = Plus / Plus Query: 365 tggagaggatctgggcgtcgagatccttgcggatgttgaaggcggatccgtagatggcct 424 |||||||||| ||||| || |||||||||||||||||||||||||||||||||||||| | Sbjct: 34173720 tggagaggatttgggcatcaagatccttgcggatgttgaaggcggatccgtagatggctt 34173779 Query: 425 cggtcccgaacttcttcttgtcgtcccagaacttggactcct 466 | | |||||| |||||||||| |||||||||||| ||||| Sbjct: 34173780 ccgcgccgaacctcttcttgtccgcccagaacttggcctcct 34173821 Score = 115 bits (58), Expect = 2e-22 Identities = 91/102 (89%) Strand = Plus / Plus Query: 365 tggagaggatctgggcgtcgagatccttgcggatgttgaaggcggatccgtagatggcct 424 |||||||||| ||||| || |||||||||||||||||||||||||||||||||||||| | Sbjct: 34144003 tggagaggatttgggcatcaagatccttgcggatgttgaaggcggatccgtagatggctt 34144062 Query: 425 cggtcccgaacttcttcttgtcgtcccagaacttggactcct 466 | | |||||| |||||||||| |||||||||||| ||||| Sbjct: 34144063 ccgcgccgaacctcttcttgtccgcccagaacttggcctcct 34144104 Score = 115 bits (58), Expect = 2e-22 Identities = 91/102 (89%) Strand = Plus / Plus Query: 365 tggagaggatctgggcgtcgagatccttgcggatgttgaaggcggatccgtagatggcct 424 |||||||||| ||||| || |||||||||||||||||||||||||||||||||||||| | Sbjct: 34119451 tggagaggatttgggcatcaagatccttgcggatgttgaaggcggatccgtagatggctt 34119510 Query: 425 cggtcccgaacttcttcttgtcgtcccagaacttggactcct 466 | | |||||| |||||||||| |||||||||||| ||||| Sbjct: 34119511 ccgcgccgaacctcttcttgtccgcccagaacttggcctcct 34119552 Score = 111 bits (56), Expect = 3e-21 Identities = 86/96 (89%) Strand = Plus / Plus Query: 365 tggagaggatctgggcgtcgagatccttgcggatgttgaaggcggatccgtagatggcct 424 |||||||||| ||||| || |||||||||||||||||||||||||||||||||||||| | Sbjct: 34096277 tggagaggatttgggcatcaagatccttgcggatgttgaaggcggatccgtagatggctt 34096336 Query: 425 cggtcccgaacttcttcttgtcgtcccagaacttgg 460 | | |||||| |||||||||| |||||||||||| Sbjct: 34096337 ccgcgccgaacctcttcttgtccgcccagaacttgg 34096372 Score = 107 bits (54), Expect = 4e-20 Identities = 113/132 (85%), Gaps = 3/132 (2%) Strand = Plus / Plus Query: 464 ccttgtggatggcggcctggacggggtgcgccggcgcgaggtcgccgcggacgctgtcgt 523 ||||||||| | |||||||| ||||||| |||||||||||| || ||||||||||| Sbjct: 34096458 ccttgtggacgctggcctggagcgggtgcggcggcgcgaggtcccccttgacgctgtcgt 34096517 Query: 524 tgacgccgaagcggagcacgtcgtgggtctcgccgagctccttcttcgccatgaatccgc 583 |||||||||||||||| ||||||||| || |||||| |||||||||| ||| | |||| Sbjct: 34096518 tgacgccgaagcggaggacgtcgtggttcccgccgatctccttcttcaccacg---ccgc 34096574 Query: 584 cgctcgccatcg 595 |||||||||||| Sbjct: 34096575 cgctcgccatcg 34096586 Score = 99.6 bits (50), Expect = 1e-17 Identities = 112/132 (84%), Gaps = 3/132 (2%) Strand = Plus / Plus Query: 464 ccttgtggatggcggcctggacggggtgcgccggcgcgaggtcgccgcggacgctgtcgt 523 ||||||||| | |||||||| ||||||| |||||||||||| || ||||||||||| Sbjct: 34173914 ccttgtggacgctggcctggagcgggtgcggcggcgcgaggtcccccttgacgctgtcgt 34173973 Query: 524 tgacgccgaagcggagcacgtcgtgggtctcgccgagctccttcttcgccatgaatccgc 583 ||||||||||||||| ||||||||| || |||||| |||||||||| ||| | |||| Sbjct: 34173974 tgacgccgaagcggacgacgtcgtggttcccgccgatctccttcttcaccacg---ccgc 34174030 Query: 584 cgctcgccatcg 595 |||||||||||| Sbjct: 34174031 cgctcgccatcg 34174042 Score = 99.6 bits (50), Expect = 1e-17 Identities = 112/132 (84%), Gaps = 3/132 (2%) Strand = Plus / Plus Query: 464 ccttgtggatggcggcctggacggggtgcgccggcgcgaggtcgccgcggacgctgtcgt 523 ||||||||| | |||||||| ||||||| |||||||||||| || ||||||||||| Sbjct: 34144197 ccttgtggacgctggcctggagcgggtgcggcggcgcgaggtcccccttgacgctgtcgt 34144256 Query: 524 tgacgccgaagcggagcacgtcgtgggtctcgccgagctccttcttcgccatgaatccgc 583 ||||||||||||||| ||||||||| || |||||| |||||||||| ||| | |||| Sbjct: 34144257 tgacgccgaagcggacgacgtcgtggttcccgccgatctccttcttcaccacg---ccgc 34144313 Query: 584 cgctcgccatcg 595 |||||||||||| Sbjct: 34144314 cgctcgccatcg 34144325 Score = 99.6 bits (50), Expect = 1e-17 Identities = 112/132 (84%), Gaps = 3/132 (2%) Strand = Plus / Plus Query: 464 ccttgtggatggcggcctggacggggtgcgccggcgcgaggtcgccgcggacgctgtcgt 523 ||||||||| | |||||||| ||||||| |||||||||||| || ||||||||||| Sbjct: 34119648 ccttgtggacgctggcctggagcgggtgcggcggcgcgaggtcccccttgacgctgtcgt 34119707 Query: 524 tgacgccgaagcggagcacgtcgtgggtctcgccgagctccttcttcgccatgaatccgc 583 ||||||||||||||| ||||||||| || |||||| |||||||||| ||| | |||| Sbjct: 34119708 tgacgccgaagcggacgacgtcgtggttcccgccgatctccttcttcaccacg---ccgc 34119764 Query: 584 cgctcgccatcg 595 |||||||||||| Sbjct: 34119765 cgctcgccatcg 34119776 Score = 69.9 bits (35), Expect = 1e-08 Identities = 62/71 (87%) Strand = Plus / Plus Query: 163 aatcaattgaaactggggcagatgggtcccttggacaggccaaggcgaacctccatcccg 222 |||||||||||||| ||||| | |||||||| |||| || |||||||||||||| ||| Sbjct: 34094615 aatcaattgaaactagggcaaacaggtccctttgacaaaccgaggcgaacctccattccg 34094674 Query: 223 tggtgcatgtc 233 ||||||||||| Sbjct: 34094675 tggtgcatgtc 34094685 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 484 acggggtgcgccggcgcgagg 504 ||||||||||||||||||||| Sbjct: 33056841 acggggtgcgccggcgcgagg 33056861 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 426 ggtcccgaacttcttcttgt 445 |||||||||||||||||||| Sbjct: 27264326 ggtcccgaacttcttcttgt 27264307
>dbj|AP007227.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0032L17 Length = 165808 Score = 139 bits (70), Expect = 1e-29 Identities = 94/102 (92%) Strand = Plus / Plus Query: 266 agttaaggtaatcttcaaatccaaaatcatccaaggaacctgtcattgcctcatatccca 325 ||||||| ||||||||||| ||||||||||| |||||||| |||| |||||||||||| | Sbjct: 100380 agttaagataatcttcaaacccaaaatcatctaaggaaccagtcagtgcctcatatccta 100439 Query: 326 gcatagatgatggcaatgcacctgggggcctttggaacctgg 367 |||||||||| ||||||||||| ||||||||||||||||||| Sbjct: 100440 gcatagatgacggcaatgcaccagggggcctttggaacctgg 100481 Score = 139 bits (70), Expect = 1e-29 Identities = 94/102 (92%) Strand = Plus / Plus Query: 266 agttaaggtaatcttcaaatccaaaatcatccaaggaacctgtcattgcctcatatccca 325 ||||||| ||||||||||| ||||||||||| |||||||| |||| |||||||||||| | Sbjct: 70663 agttaagataatcttcaaacccaaaatcatctaaggaaccagtcagtgcctcatatccta 70722 Query: 326 gcatagatgatggcaatgcacctgggggcctttggaacctgg 367 |||||||||| ||||||||||| ||||||||||||||||||| Sbjct: 70723 gcatagatgacggcaatgcaccagggggcctttggaacctgg 70764 Score = 139 bits (70), Expect = 1e-29 Identities = 94/102 (92%) Strand = Plus / Plus Query: 266 agttaaggtaatcttcaaatccaaaatcatccaaggaacctgtcattgcctcatatccca 325 ||||||| ||||||||||| ||||||||||| |||||||| |||| |||||||||||| | Sbjct: 46111 agttaagataatcttcaaacccaaaatcatctaaggaaccagtcagtgcctcatatccta 46170 Query: 326 gcatagatgatggcaatgcacctgggggcctttggaacctgg 367 |||||||||| ||||||||||| ||||||||||||||||||| Sbjct: 46171 gcatagatgacggcaatgcaccagggggcctttggaacctgg 46212 Score = 139 bits (70), Expect = 1e-29 Identities = 94/102 (92%) Strand = Plus / Plus Query: 266 agttaaggtaatcttcaaatccaaaatcatccaaggaacctgtcattgcctcatatccca 325 ||||||| ||||||||||| ||||||||||| |||||||| |||| |||||||||||| | Sbjct: 22924 agttaagataatcttcaaacccaaaatcatctaaggaaccagtcagtgcctcatatccta 22983 Query: 326 gcatagatgatggcaatgcacctgggggcctttggaacctgg 367 |||||||||| ||||||||||| ||||||||||||||||||| Sbjct: 22984 gcatagatgacggcaatgcaccagggggcctttggaacctgg 23025 Score = 115 bits (58), Expect = 2e-22 Identities = 91/102 (89%) Strand = Plus / Plus Query: 365 tggagaggatctgggcgtcgagatccttgcggatgttgaaggcggatccgtagatggcct 424 |||||||||| ||||| || |||||||||||||||||||||||||||||||||||||| | Sbjct: 101234 tggagaggatttgggcatcaagatccttgcggatgttgaaggcggatccgtagatggctt 101293 Query: 425 cggtcccgaacttcttcttgtcgtcccagaacttggactcct 466 | | |||||| |||||||||| |||||||||||| ||||| Sbjct: 101294 ccgcgccgaacctcttcttgtccgcccagaacttggcctcct 101335 Score = 115 bits (58), Expect = 2e-22 Identities = 91/102 (89%) Strand = Plus / Plus Query: 365 tggagaggatctgggcgtcgagatccttgcggatgttgaaggcggatccgtagatggcct 424 |||||||||| ||||| || |||||||||||||||||||||||||||||||||||||| | Sbjct: 71517 tggagaggatttgggcatcaagatccttgcggatgttgaaggcggatccgtagatggctt 71576 Query: 425 cggtcccgaacttcttcttgtcgtcccagaacttggactcct 466 | | |||||| |||||||||| |||||||||||| ||||| Sbjct: 71577 ccgcgccgaacctcttcttgtccgcccagaacttggcctcct 71618 Score = 115 bits (58), Expect = 2e-22 Identities = 91/102 (89%) Strand = Plus / Plus Query: 365 tggagaggatctgggcgtcgagatccttgcggatgttgaaggcggatccgtagatggcct 424 |||||||||| ||||| || |||||||||||||||||||||||||||||||||||||| | Sbjct: 46965 tggagaggatttgggcatcaagatccttgcggatgttgaaggcggatccgtagatggctt 47024 Query: 425 cggtcccgaacttcttcttgtcgtcccagaacttggactcct 466 | | |||||| |||||||||| |||||||||||| ||||| Sbjct: 47025 ccgcgccgaacctcttcttgtccgcccagaacttggcctcct 47066 Score = 111 bits (56), Expect = 3e-21 Identities = 86/96 (89%) Strand = Plus / Plus Query: 365 tggagaggatctgggcgtcgagatccttgcggatgttgaaggcggatccgtagatggcct 424 |||||||||| ||||| || |||||||||||||||||||||||||||||||||||||| | Sbjct: 23791 tggagaggatttgggcatcaagatccttgcggatgttgaaggcggatccgtagatggctt 23850 Query: 425 cggtcccgaacttcttcttgtcgtcccagaacttgg 460 | | |||||| |||||||||| |||||||||||| Sbjct: 23851 ccgcgccgaacctcttcttgtccgcccagaacttgg 23886 Score = 107 bits (54), Expect = 4e-20 Identities = 113/132 (85%), Gaps = 3/132 (2%) Strand = Plus / Plus Query: 464 ccttgtggatggcggcctggacggggtgcgccggcgcgaggtcgccgcggacgctgtcgt 523 ||||||||| | |||||||| ||||||| |||||||||||| || ||||||||||| Sbjct: 23972 ccttgtggacgctggcctggagcgggtgcggcggcgcgaggtcccccttgacgctgtcgt 24031 Query: 524 tgacgccgaagcggagcacgtcgtgggtctcgccgagctccttcttcgccatgaatccgc 583 |||||||||||||||| ||||||||| || |||||| |||||||||| ||| | |||| Sbjct: 24032 tgacgccgaagcggaggacgtcgtggttcccgccgatctccttcttcaccacg---ccgc 24088 Query: 584 cgctcgccatcg 595 |||||||||||| Sbjct: 24089 cgctcgccatcg 24100 Score = 99.6 bits (50), Expect = 1e-17 Identities = 112/132 (84%), Gaps = 3/132 (2%) Strand = Plus / Plus Query: 464 ccttgtggatggcggcctggacggggtgcgccggcgcgaggtcgccgcggacgctgtcgt 523 ||||||||| | |||||||| ||||||| |||||||||||| || ||||||||||| Sbjct: 101428 ccttgtggacgctggcctggagcgggtgcggcggcgcgaggtcccccttgacgctgtcgt 101487 Query: 524 tgacgccgaagcggagcacgtcgtgggtctcgccgagctccttcttcgccatgaatccgc 583 ||||||||||||||| ||||||||| || |||||| |||||||||| ||| | |||| Sbjct: 101488 tgacgccgaagcggacgacgtcgtggttcccgccgatctccttcttcaccacg---ccgc 101544 Query: 584 cgctcgccatcg 595 |||||||||||| Sbjct: 101545 cgctcgccatcg 101556 Score = 99.6 bits (50), Expect = 1e-17 Identities = 112/132 (84%), Gaps = 3/132 (2%) Strand = Plus / Plus Query: 464 ccttgtggatggcggcctggacggggtgcgccggcgcgaggtcgccgcggacgctgtcgt 523 ||||||||| | |||||||| ||||||| |||||||||||| || ||||||||||| Sbjct: 71711 ccttgtggacgctggcctggagcgggtgcggcggcgcgaggtcccccttgacgctgtcgt 71770 Query: 524 tgacgccgaagcggagcacgtcgtgggtctcgccgagctccttcttcgccatgaatccgc 583 ||||||||||||||| ||||||||| || |||||| |||||||||| ||| | |||| Sbjct: 71771 tgacgccgaagcggacgacgtcgtggttcccgccgatctccttcttcaccacg---ccgc 71827 Query: 584 cgctcgccatcg 595 |||||||||||| Sbjct: 71828 cgctcgccatcg 71839 Score = 99.6 bits (50), Expect = 1e-17 Identities = 112/132 (84%), Gaps = 3/132 (2%) Strand = Plus / Plus Query: 464 ccttgtggatggcggcctggacggggtgcgccggcgcgaggtcgccgcggacgctgtcgt 523 ||||||||| | |||||||| ||||||| |||||||||||| || ||||||||||| Sbjct: 47162 ccttgtggacgctggcctggagcgggtgcggcggcgcgaggtcccccttgacgctgtcgt 47221 Query: 524 tgacgccgaagcggagcacgtcgtgggtctcgccgagctccttcttcgccatgaatccgc 583 ||||||||||||||| ||||||||| || |||||| |||||||||| ||| | |||| Sbjct: 47222 tgacgccgaagcggacgacgtcgtggttcccgccgatctccttcttcaccacg---ccgc 47278 Query: 584 cgctcgccatcg 595 |||||||||||| Sbjct: 47279 cgctcgccatcg 47290 Score = 69.9 bits (35), Expect = 1e-08 Identities = 62/71 (87%) Strand = Plus / Plus Query: 163 aatcaattgaaactggggcagatgggtcccttggacaggccaaggcgaacctccatcccg 222 |||||||||||||| ||||| | |||||||| |||| || |||||||||||||| ||| Sbjct: 22129 aatcaattgaaactagggcaaacaggtccctttgacaaaccgaggcgaacctccattccg 22188 Query: 223 tggtgcatgtc 233 ||||||||||| Sbjct: 22189 tggtgcatgtc 22199
>dbj|AP005056.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0689B12 Length = 154745 Score = 139 bits (70), Expect = 1e-29 Identities = 94/102 (92%) Strand = Plus / Plus Query: 266 agttaaggtaatcttcaaatccaaaatcatccaaggaacctgtcattgcctcatatccca 325 ||||||| ||||||||||| ||||||||||| |||||||| |||| |||||||||||| | Sbjct: 8139 agttaagataatcttcaaacccaaaatcatctaaggaaccagtcagtgcctcatatccta 8198 Query: 326 gcatagatgatggcaatgcacctgggggcctttggaacctgg 367 |||||||||| ||||||||||| ||||||||||||||||||| Sbjct: 8199 gcatagatgacggcaatgcaccagggggcctttggaacctgg 8240 Score = 115 bits (58), Expect = 2e-22 Identities = 91/102 (89%) Strand = Plus / Plus Query: 365 tggagaggatctgggcgtcgagatccttgcggatgttgaaggcggatccgtagatggcct 424 |||||||||| ||||| || |||||||||||||||||||||||||||||||||||||| | Sbjct: 8993 tggagaggatttgggcatcaagatccttgcggatgttgaaggcggatccgtagatggctt 9052 Query: 425 cggtcccgaacttcttcttgtcgtcccagaacttggactcct 466 | | |||||| |||||||||| |||||||||||| ||||| Sbjct: 9053 ccgcgccgaacctcttcttgtccgcccagaacttggcctcct 9094 Score = 99.6 bits (50), Expect = 1e-17 Identities = 112/132 (84%), Gaps = 3/132 (2%) Strand = Plus / Plus Query: 464 ccttgtggatggcggcctggacggggtgcgccggcgcgaggtcgccgcggacgctgtcgt 523 ||||||||| | |||||||| ||||||| |||||||||||| || ||||||||||| Sbjct: 9187 ccttgtggacgctggcctggagcgggtgcggcggcgcgaggtcccccttgacgctgtcgt 9246 Query: 524 tgacgccgaagcggagcacgtcgtgggtctcgccgagctccttcttcgccatgaatccgc 583 ||||||||||||||| ||||||||| || |||||| |||||||||| ||| | |||| Sbjct: 9247 tgacgccgaagcggacgacgtcgtggttcccgccgatctccttcttcaccacg---ccgc 9303 Query: 584 cgctcgccatcg 595 |||||||||||| Sbjct: 9304 cgctcgccatcg 9315
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 121 bits (61), Expect = 3e-24 Identities = 85/93 (91%) Strand = Plus / Minus Query: 274 taatcttcaaatccaaaatcatccaaggaacctgtcattgcctcatatcccagcatagat 333 ||||||||||| || ||||||||||||||||| |||| ||||| ||||| ||||||||| Sbjct: 21300317 taatcttcaaacccgaaatcatccaaggaaccagtcagcgcctcgtatcctagcatagat 21300258 Query: 334 gatggcaatgcacctgggggcctttggaacctg 366 |||||||||||||| |||||||||||||||||| Sbjct: 21300257 gatggcaatgcaccagggggcctttggaacctg 21300225 Score = 115 bits (58), Expect = 2e-22 Identities = 91/102 (89%) Strand = Plus / Minus Query: 365 tggagaggatctgggcgtcgagatccttgcggatgttgaaggcggatccgtagatggcct 424 |||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||| | Sbjct: 21298449 tggagaggatttgggcatcgagatccttgcggatgttgaaagcggatccgtagatggctt 21298390 Query: 425 cggtcccgaacttcttcttgtcgtcccagaacttggactcct 466 | | ||||||| ||||||| || |||||||||||| ||||| Sbjct: 21298389 ccgccccgaacctcttcttatccgcccagaacttggcctcct 21298348 Score = 109 bits (55), Expect = 1e-20 Identities = 94/107 (87%) Strand = Plus / Minus Query: 464 ccttgtggatggcggcctggacggggtgcgccggcgcgaggtcgccgcggacgctgtcgt 523 ||||||||| || |||||||| |||||| ||||||||||||||| |||||||| || Sbjct: 21298259 ccttgtggacggtggcctggatcgggtgctgcggcgcgaggtcgcccttgacgctgttgt 21298200 Query: 524 tgacgccgaagcggagcacgtcgtgggtctcgccgagctccttcttc 570 ||||||||||| |||||||||||||| ||||||||| |||||||||| Sbjct: 21298199 tgacgccgaagaggagcacgtcgtggttctcgccgacctccttcttc 21298153 Score = 85.7 bits (43), Expect = 2e-13 Identities = 64/71 (90%) Strand = Plus / Minus Query: 163 aatcaattgaaactggggcagatgggtcccttggacaggccaaggcgaacctccatcccg 222 |||||||||||||| ||||| || |||||||| |||| ||||||||||||||||| ||| Sbjct: 21301089 aatcaattgaaactagggcaaatcggtccctttgacaaaccaaggcgaacctccattccg 21301030 Query: 223 tggtgcatgtc 233 ||||||||||| Sbjct: 21301029 tggtgcatgtc 21301019
>gb|AC133333.5| Oryza sativa chromosome 3 BAC OJ1785_A05 genomic sequence, complete sequence Length = 174910 Score = 121 bits (61), Expect = 3e-24 Identities = 85/93 (91%) Strand = Plus / Minus Query: 274 taatcttcaaatccaaaatcatccaaggaacctgtcattgcctcatatcccagcatagat 333 ||||||||||| || ||||||||||||||||| |||| ||||| ||||| ||||||||| Sbjct: 156232 taatcttcaaacccgaaatcatccaaggaaccagtcagcgcctcgtatcctagcatagat 156173 Query: 334 gatggcaatgcacctgggggcctttggaacctg 366 |||||||||||||| |||||||||||||||||| Sbjct: 156172 gatggcaatgcaccagggggcctttggaacctg 156140 Score = 115 bits (58), Expect = 2e-22 Identities = 91/102 (89%) Strand = Plus / Minus Query: 365 tggagaggatctgggcgtcgagatccttgcggatgttgaaggcggatccgtagatggcct 424 |||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||| | Sbjct: 154364 tggagaggatttgggcatcgagatccttgcggatgttgaaagcggatccgtagatggctt 154305 Query: 425 cggtcccgaacttcttcttgtcgtcccagaacttggactcct 466 | | ||||||| ||||||| || |||||||||||| ||||| Sbjct: 154304 ccgccccgaacctcttcttatccgcccagaacttggcctcct 154263 Score = 109 bits (55), Expect = 1e-20 Identities = 94/107 (87%) Strand = Plus / Minus Query: 464 ccttgtggatggcggcctggacggggtgcgccggcgcgaggtcgccgcggacgctgtcgt 523 ||||||||| || |||||||| |||||| ||||||||||||||| |||||||| || Sbjct: 154174 ccttgtggacggtggcctggatcgggtgctgcggcgcgaggtcgcccttgacgctgttgt 154115 Query: 524 tgacgccgaagcggagcacgtcgtgggtctcgccgagctccttcttc 570 ||||||||||| |||||||||||||| ||||||||| |||||||||| Sbjct: 154114 tgacgccgaagaggagcacgtcgtggttctcgccgacctccttcttc 154068 Score = 85.7 bits (43), Expect = 2e-13 Identities = 64/71 (90%) Strand = Plus / Minus Query: 163 aatcaattgaaactggggcagatgggtcccttggacaggccaaggcgaacctccatcccg 222 |||||||||||||| ||||| || |||||||| |||| ||||||||||||||||| ||| Sbjct: 157004 aatcaattgaaactagggcaaatcggtccctttgacaaaccaaggcgaacctccattccg 156945 Query: 223 tggtgcatgtc 233 ||||||||||| Sbjct: 156944 tggtgcatgtc 156934
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 121 bits (61), Expect = 3e-24 Identities = 85/93 (91%) Strand = Plus / Minus Query: 274 taatcttcaaatccaaaatcatccaaggaacctgtcattgcctcatatcccagcatagat 333 ||||||||||| || ||||||||||||||||| |||| ||||| ||||| ||||||||| Sbjct: 8584417 taatcttcaaacccgaaatcatccaaggaaccagtcagcgcctcgtatcctagcatagat 8584358 Query: 334 gatggcaatgcacctgggggcctttggaacctg 366 |||||||||||||| |||||||||||||||||| Sbjct: 8584357 gatggcaatgcaccagggggcctttggaacctg 8584325 Score = 115 bits (58), Expect = 2e-22 Identities = 91/102 (89%) Strand = Plus / Minus Query: 365 tggagaggatctgggcgtcgagatccttgcggatgttgaaggcggatccgtagatggcct 424 |||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||| | Sbjct: 8582551 tggagaggatttgggcatcgagatccttgcggatgttgaaagcggatccgtagatggctt 8582492 Query: 425 cggtcccgaacttcttcttgtcgtcccagaacttggactcct 466 | | ||||||| ||||||| || |||||||||||| ||||| Sbjct: 8582491 ccgccccgaacctcttcttatccgcccagaacttggcctcct 8582450 Score = 109 bits (55), Expect = 1e-20 Identities = 94/107 (87%) Strand = Plus / Minus Query: 464 ccttgtggatggcggcctggacggggtgcgccggcgcgaggtcgccgcggacgctgtcgt 523 ||||||||| || |||||||| |||||| ||||||||||||||| |||||||| || Sbjct: 8582361 ccttgtggacggtggcctggatcgggtgctgcggcgcgaggtcgcccttgacgctgttgt 8582302 Query: 524 tgacgccgaagcggagcacgtcgtgggtctcgccgagctccttcttc 570 ||| |||||||||||||||||||||| ||||||||| |||||||||| Sbjct: 8582301 tgaagccgaagcggagcacgtcgtggttctcgccgacctccttcttc 8582255 Score = 77.8 bits (39), Expect = 4e-11 Identities = 63/71 (88%) Strand = Plus / Minus Query: 163 aatcaattgaaactggggcagatgggtcccttggacaggccaaggcgaacctccatcccg 222 |||||||||||||| ||||| || |||||||| |||| |||||| |||||||||| ||| Sbjct: 8585191 aatcaattgaaactagggcaaatcggtccctttgacaaaccaaggagaacctccattccg 8585132 Query: 223 tggtgcatgtc 233 ||||||||||| Sbjct: 8585131 tggtgcatgtc 8585121 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 484 acggggtgcgccggcgcgagg 504 ||||||||||||||||||||| Sbjct: 15959883 acggggtgcgccggcgcgagg 15959863 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 493 gccggcgcgaggtcgccgcggacg 516 ||||||||||||||||||| |||| Sbjct: 20337913 gccggcgcgaggtcgccgccgacg 20337936
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 121 bits (61), Expect = 3e-24 Identities = 85/93 (91%) Strand = Plus / Minus Query: 274 taatcttcaaatccaaaatcatccaaggaacctgtcattgcctcatatcccagcatagat 333 ||||||||||| || ||||||||||||||||| |||| ||||| ||||| ||||||||| Sbjct: 21293346 taatcttcaaacccgaaatcatccaaggaaccagtcagcgcctcgtatcctagcatagat 21293287 Query: 334 gatggcaatgcacctgggggcctttggaacctg 366 |||||||||||||| |||||||||||||||||| Sbjct: 21293286 gatggcaatgcaccagggggcctttggaacctg 21293254 Score = 115 bits (58), Expect = 2e-22 Identities = 91/102 (89%) Strand = Plus / Minus Query: 365 tggagaggatctgggcgtcgagatccttgcggatgttgaaggcggatccgtagatggcct 424 |||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||| | Sbjct: 21291478 tggagaggatttgggcatcgagatccttgcggatgttgaaagcggatccgtagatggctt 21291419 Query: 425 cggtcccgaacttcttcttgtcgtcccagaacttggactcct 466 | | ||||||| ||||||| || |||||||||||| ||||| Sbjct: 21291418 ccgccccgaacctcttcttatccgcccagaacttggcctcct 21291377 Score = 109 bits (55), Expect = 1e-20 Identities = 94/107 (87%) Strand = Plus / Minus Query: 464 ccttgtggatggcggcctggacggggtgcgccggcgcgaggtcgccgcggacgctgtcgt 523 ||||||||| || |||||||| |||||| ||||||||||||||| |||||||| || Sbjct: 21291288 ccttgtggacggtggcctggatcgggtgctgcggcgcgaggtcgcccttgacgctgttgt 21291229 Query: 524 tgacgccgaagcggagcacgtcgtgggtctcgccgagctccttcttc 570 ||||||||||| |||||||||||||| ||||||||| |||||||||| Sbjct: 21291228 tgacgccgaagaggagcacgtcgtggttctcgccgacctccttcttc 21291182 Score = 85.7 bits (43), Expect = 2e-13 Identities = 64/71 (90%) Strand = Plus / Minus Query: 163 aatcaattgaaactggggcagatgggtcccttggacaggccaaggcgaacctccatcccg 222 |||||||||||||| ||||| || |||||||| |||| ||||||||||||||||| ||| Sbjct: 21294118 aatcaattgaaactagggcaaatcggtccctttgacaaaccaaggcgaacctccattccg 21294059 Query: 223 tggtgcatgtc 233 ||||||||||| Sbjct: 21294058 tggtgcatgtc 21294048
>dbj|AP005782.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBb0079G12 Length = 139796 Score = 121 bits (61), Expect = 3e-24 Identities = 85/93 (91%) Strand = Plus / Minus Query: 274 taatcttcaaatccaaaatcatccaaggaacctgtcattgcctcatatcccagcatagat 333 ||||||||||| || ||||||||||||||||| |||| ||||| ||||| ||||||||| Sbjct: 105627 taatcttcaaacccgaaatcatccaaggaaccagtcagcgcctcgtatcctagcatagat 105568 Query: 334 gatggcaatgcacctgggggcctttggaacctg 366 |||||||||||||| |||||||||||||||||| Sbjct: 105567 gatggcaatgcaccagggggcctttggaacctg 105535 Score = 115 bits (58), Expect = 2e-22 Identities = 91/102 (89%) Strand = Plus / Minus Query: 365 tggagaggatctgggcgtcgagatccttgcggatgttgaaggcggatccgtagatggcct 424 |||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||| | Sbjct: 103761 tggagaggatttgggcatcgagatccttgcggatgttgaaagcggatccgtagatggctt 103702 Query: 425 cggtcccgaacttcttcttgtcgtcccagaacttggactcct 466 | | ||||||| ||||||| || |||||||||||| ||||| Sbjct: 103701 ccgccccgaacctcttcttatccgcccagaacttggcctcct 103660 Score = 109 bits (55), Expect = 1e-20 Identities = 94/107 (87%) Strand = Plus / Minus Query: 464 ccttgtggatggcggcctggacggggtgcgccggcgcgaggtcgccgcggacgctgtcgt 523 ||||||||| || |||||||| |||||| ||||||||||||||| |||||||| || Sbjct: 103571 ccttgtggacggtggcctggatcgggtgctgcggcgcgaggtcgcccttgacgctgttgt 103512 Query: 524 tgacgccgaagcggagcacgtcgtgggtctcgccgagctccttcttc 570 ||| |||||||||||||||||||||| ||||||||| |||||||||| Sbjct: 103511 tgaagccgaagcggagcacgtcgtggttctcgccgacctccttcttc 103465 Score = 77.8 bits (39), Expect = 4e-11 Identities = 63/71 (88%) Strand = Plus / Minus Query: 163 aatcaattgaaactggggcagatgggtcccttggacaggccaaggcgaacctccatcccg 222 |||||||||||||| ||||| || |||||||| |||| |||||| |||||||||| ||| Sbjct: 106401 aatcaattgaaactagggcaaatcggtccctttgacaaaccaaggagaacctccattccg 106342 Query: 223 tggtgcatgtc 233 ||||||||||| Sbjct: 106341 tggtgcatgtc 106331
>dbj|AP005802.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0057D11 Length = 190790 Score = 121 bits (61), Expect = 3e-24 Identities = 85/93 (91%) Strand = Plus / Minus Query: 274 taatcttcaaatccaaaatcatccaaggaacctgtcattgcctcatatcccagcatagat 333 ||||||||||| || ||||||||||||||||| |||| ||||| ||||| ||||||||| Sbjct: 14213 taatcttcaaacccgaaatcatccaaggaaccagtcagcgcctcgtatcctagcatagat 14154 Query: 334 gatggcaatgcacctgggggcctttggaacctg 366 |||||||||||||| |||||||||||||||||| Sbjct: 14153 gatggcaatgcaccagggggcctttggaacctg 14121 Score = 115 bits (58), Expect = 2e-22 Identities = 91/102 (89%) Strand = Plus / Minus Query: 365 tggagaggatctgggcgtcgagatccttgcggatgttgaaggcggatccgtagatggcct 424 |||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||| | Sbjct: 12347 tggagaggatttgggcatcgagatccttgcggatgttgaaagcggatccgtagatggctt 12288 Query: 425 cggtcccgaacttcttcttgtcgtcccagaacttggactcct 466 | | ||||||| ||||||| || |||||||||||| ||||| Sbjct: 12287 ccgccccgaacctcttcttatccgcccagaacttggcctcct 12246 Score = 109 bits (55), Expect = 1e-20 Identities = 94/107 (87%) Strand = Plus / Minus Query: 464 ccttgtggatggcggcctggacggggtgcgccggcgcgaggtcgccgcggacgctgtcgt 523 ||||||||| || |||||||| |||||| ||||||||||||||| |||||||| || Sbjct: 12157 ccttgtggacggtggcctggatcgggtgctgcggcgcgaggtcgcccttgacgctgttgt 12098 Query: 524 tgacgccgaagcggagcacgtcgtgggtctcgccgagctccttcttc 570 ||| |||||||||||||||||||||| ||||||||| |||||||||| Sbjct: 12097 tgaagccgaagcggagcacgtcgtggttctcgccgacctccttcttc 12051 Score = 77.8 bits (39), Expect = 4e-11 Identities = 63/71 (88%) Strand = Plus / Minus Query: 163 aatcaattgaaactggggcagatgggtcccttggacaggccaaggcgaacctccatcccg 222 |||||||||||||| ||||| || |||||||| |||| |||||| |||||||||| ||| Sbjct: 14987 aatcaattgaaactagggcaaatcggtccctttgacaaaccaaggagaacctccattccg 14928 Query: 223 tggtgcatgtc 233 ||||||||||| Sbjct: 14927 tggtgcatgtc 14917
>dbj|AK099813.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013099K24, full insert sequence Length = 2648 Score = 75.8 bits (38), Expect = 2e-10 Identities = 53/58 (91%) Strand = Plus / Minus Query: 266 agttaaggtaatcttcaaatccaaaatcatccaaggaacctgtcattgcctcatatcc 323 ||||||| ||||||||||| ||||||||||| |||||||| |||| |||||||||||| Sbjct: 61 agttaagataatcttcaaacccaaaatcatctaaggaaccagtcagtgcctcatatcc 4
>emb|AJ851434.1| Gallus gallus partial mRNA for hypothetical protein, clone 2l15 Length = 2918 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 274 taatcttcaaatccaaaatcatc 296 ||||||||||||||||||||||| Sbjct: 279 taatcttcaaatccaaaatcatc 257
>ref|NM_105394.2| Arabidopsis thaliana unknown protein AT1G67250 mRNA, complete cds Length = 677 Score = 44.1 bits (22), Expect = 0.55 Identities = 49/58 (84%) Strand = Plus / Minus Query: 170 tgaaactggggcagatgggtcccttggacaggccaaggcgaacctccatcccgtggtg 227 ||||||| ||| | || |||||||| || | |||||| ||||| |||||||||||||| Sbjct: 506 tgaaacttgggtaaatcggtccctttgagatgccaagacgaacttccatcccgtggtg 449
>gb|BT011933.1| Arabidopsis thaliana At1g67250 mRNA sequence Length = 423 Score = 44.1 bits (22), Expect = 0.55 Identities = 49/58 (84%) Strand = Plus / Minus Query: 170 tgaaactggggcagatgggtcccttggacaggccaaggcgaacctccatcccgtggtg 227 ||||||| ||| | || |||||||| || | |||||| ||||| |||||||||||||| Sbjct: 418 tgaaacttgggtaaatcggtccctttgagatgccaagacgaacttccatcccgtggtg 361
>gb|AY044313.1| Arabidopsis thaliana Unknown protein (F1N21.15) mRNA, complete cds Length = 474 Score = 44.1 bits (22), Expect = 0.55 Identities = 49/58 (84%) Strand = Plus / Minus Query: 170 tgaaactggggcagatgggtcccttggacaggccaaggcgaacctccatcccgtggtg 227 ||||||| ||| | || |||||||| || | |||||| ||||| |||||||||||||| Sbjct: 421 tgaaacttgggtaaatcggtccctttgagatgccaagacgaacttccatcccgtggtg 364
>gb|AC092828.16| Homo sapiens 12 BAC RP11-282K24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 127836 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Minus Query: 70 ttctcatgtttcacaaatccat 91 |||||||||||||||||||||| Sbjct: 101925 ttctcatgtttcacaaatccat 101904
>gb|BT003679.1| Arabidopsis thaliana At1g67250 mRNA, complete cds Length = 426 Score = 44.1 bits (22), Expect = 0.55 Identities = 49/58 (84%) Strand = Plus / Minus Query: 170 tgaaactggggcagatgggtcccttggacaggccaaggcgaacctccatcccgtggtg 227 ||||||| ||| | || |||||||| || | |||||| ||||| |||||||||||||| Sbjct: 421 tgaaacttgggtaaatcggtccctttgagatgccaagacgaacttccatcccgtggtg 364
>gb|AY086781.1| Arabidopsis thaliana clone 27632 mRNA, complete sequence Length = 604 Score = 44.1 bits (22), Expect = 0.55 Identities = 49/58 (84%) Strand = Plus / Minus Query: 170 tgaaactggggcagatgggtcccttggacaggccaaggcgaacctccatcccgtggtg 227 ||||||| ||| | || |||||||| || | |||||| ||||| |||||||||||||| Sbjct: 489 tgaaacttgggtaaatcggtcccttcgagatgccaagacgaacttccatcccgtggtg 432
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 378 ggcgtcgagatccttgcggatg 399 |||||||||||||||||||||| Sbjct: 5003984 ggcgtcgagatccttgcggatg 5004005
>gb|AC002130.2|AC002130 Genomic sequence for Arabidopsis thaliana BAC F1N21 from chromosome I, complete sequence Length = 114738 Score = 44.1 bits (22), Expect = 0.55 Identities = 49/58 (84%) Strand = Plus / Plus Query: 170 tgaaactggggcagatgggtcccttggacaggccaaggcgaacctccatcccgtggtg 227 ||||||| ||| | || |||||||| || | |||||| ||||| |||||||||||||| Sbjct: 26684 tgaaacttgggtaaatcggtccctttgagatgccaagacgaacttccatcccgtggtg 26741
>dbj|AK117205.1| Arabidopsis thaliana At1g67250 mRNA for unknown protein, complete cds, clone: RAFL16-75-L12 Length = 583 Score = 44.1 bits (22), Expect = 0.55 Identities = 49/58 (84%) Strand = Plus / Minus Query: 170 tgaaactggggcagatgggtcccttggacaggccaaggcgaacctccatcccgtggtg 227 ||||||| ||| | || |||||||| || | |||||| ||||| |||||||||||||| Sbjct: 501 tgaaacttgggtaaatcggtccctttgagatgccaagacgaacttccatcccgtggtg 444
>ref|XM_468101.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1086 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 484 acggggtgcgccggcgcgagg 504 ||||||||||||||||||||| Sbjct: 416 acggggtgcgccggcgcgagg 396
>dbj|AP004846.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1293_A01 Length = 139121 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 484 acggggtgcgccggcgcgagg 504 ||||||||||||||||||||| Sbjct: 102781 acggggtgcgccggcgcgagg 102801
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 42.1 bits (21), Expect = 2.2 Identities = 30/33 (90%) Strand = Plus / Plus Query: 506 cgccgcggacgctgtcgttgacgccgaagcgga 538 |||||||||||||||||| | ||||||| |||| Sbjct: 6430728 cgccgcggacgctgtcgtcgtcgccgaaccgga 6430760
>dbj|AP005565.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1238_G07 Length = 78304 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 484 acggggtgcgccggcgcgagg 504 ||||||||||||||||||||| Sbjct: 30596 acggggtgcgccggcgcgagg 30576
>dbj|AP006703.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT01O03, TM0588b, complete sequence Length = 45450 Score = 42.1 bits (21), Expect = 2.2 Identities = 30/33 (90%) Strand = Plus / Minus Query: 202 ccaaggcgaacctccatcccgtggtgcatgtcc 234 ||||||||||| |||||||| || ||||||||| Sbjct: 33330 ccaaggcgaacttccatcccatgatgcatgtcc 33298
>gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete genome Length = 2201561 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 tcttcaaatccaaaatcatc 296 |||||||||||||||||||| Sbjct: 1149724 tcttcaaatccaaaatcatc 1149743
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 574 atgaatccgccgctcgccatcgcc 597 |||||||||||| ||||||||||| Sbjct: 245985 atgaatccgccgatcgccatcgcc 246008
>gb|AC122941.3| Mus musculus BAC clone RP23-1E3 from chromosome 8, complete sequence Length = 244220 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 276 atcttcaaatccaaaatcat 295 |||||||||||||||||||| Sbjct: 201817 atcttcaaatccaaaatcat 201798
>gb|AC135362.3| Mus musculus BAC clone RP23-286J13 from chromosome 8, complete sequence Length = 173357 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 276 atcttcaaatccaaaatcat 295 |||||||||||||||||||| Sbjct: 51656 atcttcaaatccaaaatcat 51675
>emb|BX465201.38| Zebrafish DNA sequence from clone DKEY-15F11 in linkage group 14, complete sequence Length = 262688 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 caaaacagtgacattacaat 28 |||||||||||||||||||| Sbjct: 160654 caaaacagtgacattacaat 160673
>gb|AC083890.4| Mus musculus strain C57BL6/J chromosome 5 clone RP23-284P20, complete sequence Length = 203967 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 354 cctttggaacctggagagga 373 |||||||||||||||||||| Sbjct: 21772 cctttggaacctggagagga 21791
>gb|AY223810.1| Rhodococcus erythropolis linear plasmid pBD2, complete sequence Length = 210205 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 491 gcgccggcgcgaggtcgccg 510 |||||||||||||||||||| Sbjct: 32505 gcgccggcgcgaggtcgccg 32524
>emb|BX842572.1| Mycobacterium tuberculosis H37Rv complete genome; segment 1/13 Length = 341957 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 574 atgaatccgccgctcgccatcgcc 597 |||||||||||| ||||||||||| Sbjct: 245871 atgaatccgccgatcgccatcgcc 245894
>emb|BX248334.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 1/14 Length = 343050 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 574 atgaatccgccgctcgccatcgcc 597 |||||||||||| ||||||||||| Sbjct: 246067 atgaatccgccgatcgccatcgcc 246090
>emb|AL606687.3|OSJN00087 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084K11, complete sequence Length = 147806 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 386 gatccttgcggatgttgaag 405 |||||||||||||||||||| Sbjct: 113776 gatccttgcggatgttgaag 113795
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 386 gatccttgcggatgttgaag 405 |||||||||||||||||||| Sbjct: 28106551 gatccttgcggatgttgaag 28106570
>dbj|AP005055.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0684A08 Length = 137841 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 426 ggtcccgaacttcttcttgt 445 |||||||||||||||||||| Sbjct: 114997 ggtcccgaacttcttcttgt 114978
>dbj|AP005681.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1439_F07 Length = 153743 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 493 gccggcgcgaggtcgccgcggacg 516 ||||||||||||||||||| |||| Sbjct: 117040 gccggcgcgaggtcgccgccgacg 117063
>dbj|AK119517.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-C05, full insert sequence Length = 2055 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 426 ggtcccgaacttcttcttgt 445 |||||||||||||||||||| Sbjct: 991 ggtcccgaacttcttcttgt 972
>dbj|AK111543.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013043E12, full insert sequence Length = 1090 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 493 gccggcgcgaggtcgccgcggacg 516 ||||||||||||||||||| |||| Sbjct: 628 gccggcgcgaggtcgccgccgacg 651
>dbj|AK100650.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023111D06, full insert sequence Length = 2089 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 426 ggtcccgaacttcttcttgt 445 |||||||||||||||||||| Sbjct: 988 ggtcccgaacttcttcttgt 969
>dbj|AK100585.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023106B08, full insert sequence Length = 2977 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 426 ggtcccgaacttcttcttgt 445 |||||||||||||||||||| Sbjct: 2049 ggtcccgaacttcttcttgt 2030
>dbj|AK064827.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000F07, full insert sequence Length = 1984 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 426 ggtcccgaacttcttcttgt 445 |||||||||||||||||||| Sbjct: 987 ggtcccgaacttcttcttgt 968
>dbj|AK061743.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-F02, full insert sequence Length = 1756 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 426 ggtcccgaacttcttcttgt 445 |||||||||||||||||||| Sbjct: 991 ggtcccgaacttcttcttgt 972
>dbj|AK061649.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-C02, full insert sequence Length = 1697 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 426 ggtcccgaacttcttcttgt 445 |||||||||||||||||||| Sbjct: 614 ggtcccgaacttcttcttgt 595
>gb|U07366.1|CAU07366 Candida albicans translation initiation factor eIF-5A (TIF51) gene, complete cds Length = 1993 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 149 taatacatgggtggaatcaa 168 |||||||||||||||||||| Sbjct: 986 taatacatgggtggaatcaa 1005
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 494 ccggcgcgaggtcgccgcgg 513 |||||||||||||||||||| Sbjct: 358652 ccggcgcgaggtcgccgcgg 358633 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,122,300 Number of Sequences: 3902068 Number of extensions: 4122300 Number of successful extensions: 80646 Number of sequences better than 10.0: 55 Number of HSP's better than 10.0 without gapping: 58 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 80091 Number of HSP's gapped (non-prelim): 538 length of query: 625 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 602 effective length of database: 17,143,297,704 effective search space: 10320265217808 effective search space used: 10320265217808 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
