ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd22n07 |
|---|---|
| Clone Library Name | barley_pub |
>AIG1_ARATH (P54120) Protein AIG1| Length = 353 Score = 55.8 bits (133), Expect = 1e-07 Identities = 31/97 (31%), Positives = 54/97 (55%), Gaps = 3/97 (3%) Frame = -2 Query: 610 QAKQLETLLDVVDSVSANNGGNPFTDQMLTRLKEV---HDREMEVHDAMGYSEDQITELK 440 + KQ+ LL ++D V N P+TD+M +KE H +E E ++ G+SE+Q+ L Sbjct: 216 KTKQVHELLKLIDLVRKQNNNIPYTDEMYHMIKEENERHKKEQEELESKGHSEEQLAALM 275 Query: 439 KEIHRTRDEQLANITAMVEEKLNITVEKLQVQLMEEQ 329 KE+ + L + M+E+ + I +E Q +L E++ Sbjct: 276 KELQIMNERNLKAMAEMMEKNMKIAME-AQEKLFEQR 311
>YJE9_YEAST (P47048) Hypothetical 52.8 kDa protein in MTR4-GYP6 intergenic| region Length = 450 Score = 35.4 bits (80), Expect = 0.14 Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 1/58 (1%) Frame = -2 Query: 583 DVVDSVSANNGGNPFTDQMLTRLKEVHDREMEVHDAMG-YSEDQITELKKEIHRTRDE 413 +V+ S++ G + +L +KE HDR EV+D + Y++ Q E ++EI R ++ Sbjct: 328 EVIKSINGYIGSTEKVEDLLDEIKEGHDRTEEVNDLLAHYNKGQDEEAEEEIERELEQ 385
>GOGA1_HUMAN (Q92805) Golgin subfamily A member 1 (Golgin-97)| Length = 767 Score = 33.9 bits (76), Expect = 0.40 Identities = 21/66 (31%), Positives = 37/66 (56%) Frame = -2 Query: 526 LTRLKEVHDREMEVHDAMGYSEDQITELKKEIHRTRDEQLANITAMVEEKLNITVEKLQV 347 L +LKE + V AM + +++ + ++E +Q AN+TA+++EK EK +V Sbjct: 465 LKKLKEEWSQREIVSVAMAQALEEVRKQREEFQ----QQAANLTAIIDEKEQNLREKTEV 520 Query: 346 QLMEEQ 329 L +EQ Sbjct: 521 LLQKEQ 526
>SMC2_XENLA (P50533) Structural maintenance of chromosome 2| (Chromosome-associated protein E) (Chromosome assembly protein XCAP-E) Length = 1203 Score = 32.3 bits (72), Expect = 1.2 Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 3/52 (5%) Frame = -2 Query: 517 LKEVHDREMEVHDAMGYSEDQITELKKEI---HRTRDEQLANITAMVEEKLN 371 LKE+ D +++ D M +E ++ EL KEI + RD+++ +EE L+ Sbjct: 253 LKEMQDSILKLQDTMAENERKVKELGKEIAELEKMRDQEVGGALRSLEEALS 304
>EP15_HUMAN (P42566) Epidermal growth factor receptor substrate 15 (Protein| Eps15) (AF-1p protein) Length = 896 Score = 32.0 bits (71), Expect = 1.5 Identities = 18/71 (25%), Positives = 30/71 (42%) Frame = -2 Query: 547 NPFTDQMLTRLKEVHDREMEVHDAMGYSEDQITELKKEIHRTRDEQLANITAMVEEKLNI 368 +PFT T KE A ED I K+E R +++LA + +E L + Sbjct: 825 DPFTSATTTTNKEADPSNFANFSAYPSEEDMIEWAKRESEREEEQRLARLNQQEQEDLEL 884 Query: 367 TVEKLQVQLME 335 + + ++ E Sbjct: 885 AIALSKSEISE 895
>MYSP_SARSC (Q9BMM8) Paramyosin| Length = 876 Score = 31.6 bits (70), Expect = 2.0 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 3/65 (4%) Frame = -2 Query: 517 LKEVHDREMEVHDAMGYSEDQITELKKEIHRTRDEQLANITAMVE---EKLNITVEKLQV 347 +KEVH+ +M++ +A + +L+ HR +E+ A +E L + +E L+V Sbjct: 212 IKEVHEHKMQLDNANHLKQQLAQQLEDTKHRLEEEERKR--ASLENHAHTLEVELESLKV 269 Query: 346 QLMEE 332 QL EE Sbjct: 270 QLDEE 274
>SLYA_SALTI (P61091) Transcriptional regulator slyA| Length = 144 Score = 31.2 bits (69), Expect = 2.6 Identities = 18/44 (40%), Positives = 27/44 (61%) Frame = -2 Query: 466 SEDQITELKKEIHRTRDEQLANITAMVEEKLNITVEKLQVQLME 335 +E I E+++ IH+TR E LA I++ E L V KL+ +ME Sbjct: 96 AEPLIAEMEEVIHKTRGEILAGISSEEIELLIKLVAKLEHNIME 139
>SLYA_SALCH (P61090) Transcriptional regulator slyA| Length = 144 Score = 31.2 bits (69), Expect = 2.6 Identities = 18/44 (40%), Positives = 27/44 (61%) Frame = -2 Query: 466 SEDQITELKKEIHRTRDEQLANITAMVEEKLNITVEKLQVQLME 335 +E I E+++ IH+TR E LA I++ E L V KL+ +ME Sbjct: 96 AEPLIAEMEEVIHKTRGEILAGISSEEIELLIKLVAKLEHNIME 139
>FDHE_HAEIN (P44452) Protein fdhE homolog| Length = 302 Score = 31.2 bits (69), Expect = 2.6 Identities = 18/85 (21%), Positives = 39/85 (45%) Frame = -2 Query: 583 DVVDSVSANNGGNPFTDQMLTRLKEVHDREMEVHDAMGYSEDQITELKKEIHRTRDEQLA 404 D+V+S + NP Q L +L + + + +TE+ EI +EQ+A Sbjct: 57 DIVESQLSTLEKNPLPPQQLEQLNTIEPLNAKTFKRNSIWREYLTEILDEIKPKANEQIA 116 Query: 403 NITAMVEEKLNITVEKLQVQLMEEQ 329 +E+ + +E++ +L+ ++ Sbjct: 117 ATIEFLEKASSAELEEMANKLLAQE 141
>LETM1_RAT (Q5XIN6) Leucine zipper-EF-hand containing transmembrane protein 1,| mitochondrial precursor Length = 739 Score = 30.8 bits (68), Expect = 3.4 Identities = 16/42 (38%), Positives = 25/42 (59%) Frame = -2 Query: 535 DQMLTRLKEVHDREMEVHDAMGYSEDQITELKKEIHRTRDEQ 410 +Q + KE + E+ D YSED + E+KKE+ +T DE+ Sbjct: 556 EQKKSLTKEKEELELLKEDVQDYSED-LQEIKKELSKTGDEK 596
>NIN_HUMAN (Q8N4C6) Ninein (hNinein)| Length = 2090 Score = 30.8 bits (68), Expect = 3.4 Identities = 17/65 (26%), Positives = 37/65 (56%) Frame = -2 Query: 526 LTRLKEVHDREMEVHDAMGYSEDQITELKKEIHRTRDEQLANITAMVEEKLNITVEKLQV 347 LT+ + +RE E + ++E+++ L +E+ + EQL ++ EK + E+L+ Sbjct: 731 LTQAQASFEREREGLQSSAWTEEKVRGLTQELEQFHQEQLTSLV----EKHTLEKEELRK 786 Query: 346 QLMEE 332 +L+E+ Sbjct: 787 ELLEK 791
>SMC_METJA (Q59037) Chromosome partition protein smc homolog| Length = 1169 Score = 30.4 bits (67), Expect = 4.4 Identities = 17/59 (28%), Positives = 34/59 (57%) Frame = -2 Query: 517 LKEVHDREMEVHDAMGYSEDQITELKKEIHRTRDEQLANITAMVEEKLNITVEKLQVQL 341 +K + + EME+ D + +++++ LKKE++ + L N EK N ++KL+ +L Sbjct: 386 IKHLKESEMEIADEIAKNQNELYRLKKELNDL--DNLINRKNFEIEKNNEMIKKLKEEL 442
>VGLY_MOPEI (P19240) Glycoprotein polyprotein [Contains: Glycoprotein G1;| Glycoprotein G2] Length = 489 Score = 30.0 bits (66), Expect = 5.7 Identities = 16/61 (26%), Positives = 29/61 (47%) Frame = +2 Query: 17 IYSYPTPQAFKFYTSTNIRDDATKVLSVTTRLAQVHPLPINKTSGNFFPGESCLQNSALV 196 ++S P+P F ++ T+ ++ RL + ++ + GN PG CL S L+ Sbjct: 230 MFSRPSPMGF-----LSLLSQRTRNFYISRRLLGLFTWTLSDSEGNDMPGGYCLTRSMLI 284 Query: 197 G 199 G Sbjct: 285 G 285
>MRCKA_RAT (O54874) Serine/threonine-protein kinase MRCK alpha (EC 2.7.11.1)| (CDC42-binding protein kinase alpha) (Myotonic dystrophy kinase-related CDC42-binding kinase alpha) (Myotonic dystrophy protein kinase-like alpha) (MRCK alpha) Length = 1732 Score = 29.6 bits (65), Expect = 7.5 Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 7/76 (9%) Frame = -2 Query: 532 QMLTRLKEVHDR-----EMEVHDAMGYSEDQITELKKEIHRTRDEQLA-NITAMV-EEKL 374 Q +T+LK ++ E E+ G +I LKKE+H + +QLA N MV ++KL Sbjct: 684 QEITKLKTDLEKKSIFYEEEISKREGIHASEIKNLKKELHDSEGQQLALNKEIMVLKDKL 743 Query: 373 NITVEKLQVQLMEEQN 326 T + Q + E +N Sbjct: 744 EKTRRESQSEREEFEN 759
>SLYA_SALTY (P40676) Transcriptional regulator slyA (Salmolysin) (Cytolysin| slyA) Length = 144 Score = 29.6 bits (65), Expect = 7.5 Identities = 16/40 (40%), Positives = 25/40 (62%) Frame = -2 Query: 454 ITELKKEIHRTRDEQLANITAMVEEKLNITVEKLQVQLME 335 I E+++ IH+TR E LA I++ E L + KL+ +ME Sbjct: 100 IAEMEEVIHKTRGEILAGISSEEIELLIKLIAKLEHNIME 139
>NFM_RAT (P12839) Neurofilament triplet M protein (160 kDa neurofilament| protein) (Neurofilament medium polypeptide) (NF-M) Length = 845 Score = 29.6 bits (65), Expect = 7.5 Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 19/104 (18%) Frame = -2 Query: 595 ETLLDVVDSVSANNGGNPFTDQMLTRLKE------VHDREMEVHDAMGYSEDQITELKKE 434 E+ LD S S NGG+ D L+R E ++DR + + Y E Q E++ E Sbjct: 72 ESSLDFSQSSSLLNGGSG-GDYKLSRSNEKEQLQGLNDRFAGYIEKVHYLEQQNKEIEAE 130 Query: 433 IHRTR-------------DEQLANITAMVEEKLNITVEKLQVQL 341 IH R D+++ + A +E + EK QVQL Sbjct: 131 IHALRQKQASHAQLGDAYDQEIRELRATLE---MVNHEKAQVQL 171
>MYSP_BOOMI (Q86RN8) Paramyosin| Length = 873 Score = 29.3 bits (64), Expect = 9.8 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 2/64 (3%) Frame = -2 Query: 517 LKEVHDREMEVHDAMGYSEDQITELKKEIHRTRDEQ--LANITAMVEEKLNITVEKLQVQ 344 LKEVH+ ++ + + T+L+ R DE+ A++ + + L + +E L+VQ Sbjct: 210 LKEVHELKVSLDNVNHLKSQLATQLEDTRRRLEDEERKRASLESSM-HTLEVEIESLKVQ 268 Query: 343 LMEE 332 L EE Sbjct: 269 LEEE 272
>GAS8_MOUSE (Q60779) Growth-arrest-specific protein 8 (Growth arrest-specific| 11) Length = 478 Score = 29.3 bits (64), Expect = 9.8 Identities = 21/96 (21%), Positives = 43/96 (44%), Gaps = 11/96 (11%) Frame = -2 Query: 580 VVDSVSANNGGNPFTDQMLTRLKEVHDREME-----------VHDAMGYSEDQITELKKE 434 +VD V+ + ++ + R++E DRE E +H + Q+ E K E Sbjct: 17 IVDGVAPEDMTKEQVEEHVARIREELDREREERNYFQLERDKIHTFWEITRRQLEEKKAE 76 Query: 433 IHRTRDEQLANITAMVEEKLNITVEKLQVQLMEEQN 326 + R +D ++ + ++ + +K++ L E QN Sbjct: 77 L-RNKDREMEEAEERHQVEIKVYKQKVKHLLYEHQN 111
>GAS8_HUMAN (O95995) Growth-arrest-specific protein 8 (Growth arrest-specific| 11) Length = 478 Score = 29.3 bits (64), Expect = 9.8 Identities = 20/96 (20%), Positives = 44/96 (45%), Gaps = 11/96 (11%) Frame = -2 Query: 580 VVDSVSANNGGNPFTDQMLTRLKEVHDREME-----------VHDAMGYSEDQITELKKE 434 +VD ++ + ++ ++R++E DRE E +H + Q+ E K E Sbjct: 17 IVDGLAPEDMSKEQVEEHVSRIREELDREREERNYFQLERDKIHTFWEITRRQLEEKKAE 76 Query: 433 IHRTRDEQLANITAMVEEKLNITVEKLQVQLMEEQN 326 + R +D ++ + ++ + +K++ L E QN Sbjct: 77 L-RNKDREMEEAEERHQVEIKVYKQKVKHLLYEHQN 111
>Y2597_MYCBO (P59974) Hypothetical protein Mb2597| Length = 884 Score = 29.3 bits (64), Expect = 9.8 Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 3/79 (3%) Frame = -2 Query: 619 PRIQAKQLETL-LDVVDSVSANNGGNP--FTDQMLTRLKEVHDREMEVHDAMGYSEDQIT 449 PR QLE L D+ D ++ P D+M TRL+ H E+E A G ++ Sbjct: 784 PRSLVYQLERLRADLKDLPGSSGSSRPERMVDEMNTRLRRSHPEELEEVSADGL-RAELA 842 Query: 448 ELKKEIHRTRDEQLANITA 392 EL IH + + +TA Sbjct: 843 ELLAGIHASLRDVADVLTA 861
>Y2567_MYCTU (Q50654) Hypothetical protein Rv2567/MT2643| Length = 884 Score = 29.3 bits (64), Expect = 9.8 Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 3/79 (3%) Frame = -2 Query: 619 PRIQAKQLETL-LDVVDSVSANNGGNP--FTDQMLTRLKEVHDREMEVHDAMGYSEDQIT 449 PR QLE L D+ D ++ P D+M TRL+ H E+E A G ++ Sbjct: 784 PRSLVYQLERLRADLKDLPGSSGSSRPERMVDEMNTRLRRSHPEELEEVSADGL-RAELA 842 Query: 448 ELKKEIHRTRDEQLANITA 392 EL IH + + +TA Sbjct: 843 ELLAGIHASLRDVADVLTA 861
>FGRL1_MOUSE (Q91V87) Fibroblast growth factor receptor-like 1 precursor (FGF| receptor-like protein 1) (Fibroblast growth factor receptor 5) Length = 529 Score = 29.3 bits (64), Expect = 9.8 Identities = 20/74 (27%), Positives = 26/74 (35%), Gaps = 11/74 (14%) Frame = -1 Query: 326 CKAXXXXXXXXXXXXXXXGDPQAQGEAREGPGGKRGVPEAGGDQQ-----------VRYS 180 CKA D + G+ GPGG G E QQ +R Sbjct: 95 CKATNGFGSLSVNYTLIIMDDISPGKESPGPGGSSGGQEDPASQQWARPRFTQPSKMRRR 154 Query: 179 VNSSPLGKSYRMSC 138 V + P+G S R+ C Sbjct: 155 VIARPVGSSVRLKC 168
>SYI_GLOVI (Q7NF75) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 983 Score = 29.3 bits (64), Expect = 9.8 Identities = 16/50 (32%), Positives = 24/50 (48%) Frame = -2 Query: 571 SVSANNGGNPFTDQMLTRLKEVHDREMEVHDAMGYSEDQITELKKEIHRT 422 S++A ++L RL HDRE E+ DA+ D + E+ I T Sbjct: 229 SIAAPETATVMAAELLPRLSAFHDREEELIDALLGERDDLPEIAVAIWTT 278
>HMP_RHIME (Q7WUM8) Flavohemoprotein (Hemoglobin-like protein)| (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17) (NO oxygenase) (NOD) Length = 403 Score = 29.3 bits (64), Expect = 9.8 Identities = 13/26 (50%), Positives = 19/26 (73%) Frame = -1 Query: 218 VPEAGGDQQVRYSVNSSPLGKSYRMS 141 VP+ G Q +YS++ SP G+SYR+S Sbjct: 197 VPKLGYQQIRQYSLSDSPNGRSYRIS 222 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 78,868,020 Number of Sequences: 219361 Number of extensions: 1507488 Number of successful extensions: 6170 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 5625 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6151 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5653129581 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
