ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd22n07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_466219.1| Oryza sativa (japonica cultivar-group), mRNA 295 9e-77
2dbj|AK068385.1| Oryza sativa (japonica cultivar-group) cDNA clon... 295 9e-77
3gb|BT017369.1| Zea mays clone EL01N0324H03.c mRNA sequence 192 9e-46
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 129 1e-26
5dbj|AP005808.3| Oryza sativa (japonica cultivar-group) genomic D... 129 1e-26
6gb|AY109813.1| Zea mays CL4777_1 mRNA sequence 98 4e-17
7gb|BT017593.1| Zea mays clone EL01N0430H01.c mRNA sequence 50 0.009
8gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 46 0.14
9gb|AC118688.10| Mus musculus chromosome 5, clone RP23-302F24, co... 44 0.54
10gb|AC123558.5| Mus musculus BAC clone RP23-336N16 from chromosom... 44 0.54
11dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, co... 44 0.54
12gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 44 0.54
13gb|AC150162.1| Solanum demissum chromosome 5 clone PGEC160O2 map... 42 2.1
14gb|AC146506.1| Solanum demissum chromosome 5 BAC PGEC989P08 geno... 42 2.1
15ref|XM_743999.1| Aspergillus fumigatus Af293 integral peroxisoma... 42 2.1
16gb|AC117199.3| Mus musculus BAC clone RP23-134L22 from 10, compl... 42 2.1
17gb|AC162908.4| Mus musculus BAC clone RP24-296A15 from chromosom... 42 2.1
18dbj|AK086631.1| Mus musculus 15 days embryo head cDNA, RIKEN ful... 42 2.1
19dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
20dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 42 2.1
21dbj|AP006857.2| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
22dbj|AP005488.2| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
23gb|BT016822.1| Zea mays clone Contig655 mRNA sequence 40 8.4
24gb|AY704421.1| Gossypium anomalum clone 9G pathogenesis-related ... 40 8.4
25gb|AC140468.2| Mus musculus BAC clone RP24-394C15 from chromosom... 40 8.4
26gb|AC131107.3| Mus musculus BAC clone RP23-339P15 from chromosom... 40 8.4
27gb|AC146417.3| Pan troglodytes BAC clone RP43-29B12 from 7, comp... 40 8.4
28gb|AC105166.16| Mus musculus chromosome 5, clone RP24-311D15, co... 40 8.4
29gb|AC161600.6| Mus musculus BAC clone RP23-350K3 from chromosome... 40 8.4
30ref|XM_382838.1| Gibberella zeae PH-1 chromosome 1 hypothetical ... 40 8.4
31ref|XM_739424.1| Plasmodium chabaudi chabaudi hypothetical prote... 40 8.4
32emb|AL390766.16| Human DNA sequence from clone RP13-348N17 on ch... 40 8.4
33emb|CR388387.10| Zebrafish DNA sequence from clone DKEY-260J18 i... 40 8.4
34gb|AC092068.2| Homo sapiens chromosome 19 clone CTC-265F19, comp... 40 8.4
35gb|AC007437.16| Homo sapiens 12q22 BAC RPCI11-541G9 (Roswell Par... 40 8.4
36dbj|AK054105.1| Mus musculus 2 days pregnant adult female oviduc... 40 8.4
37gb|AC157998.2| Mus musculus BAC clone RP23-27L18 from chromosome... 40 8.4
38ref|XM_321730.2| Anopheles gambiae str. PEST ENSANGP00000016819 ... 40 8.4
39emb|CR749778.14| Zebrafish DNA sequence from clone DKEY-229D23 i... 40 8.4
40gb|AY104803.1| Zea mays PCO064157 mRNA sequence 40 8.4
41gb|AC006275.1|AC006275 Homo sapiens chromosome 19, cosmid R32203... 40 8.4
42emb|AL450023.21| Human DNA sequence from clone RP11-552J9 on chr... 40 8.4
43gb|AC151997.2| Mus musculus BAC clone RP23-138O21 from 8, comple... 40 8.4
44emb|AL121766.5|CNS01DSA Human chromosome 14 DNA sequence BAC R-4... 40 8.4 
>ref|XM_466219.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1187

 Score =  295 bits (149), Expect = 9e-77
 Identities = 320/377 (84%)
 Strand = Plus / Minus

                                                                       
Query: 213 cggaactcctcgttttcctcctgggccctctcgagcctctccttgagcttgcggatctcc 272
           ||||| ||||| ||||| |  |||||| ||||||| | ||  ||||||||||||||||||
Sbjct: 973 cggaattcctcattttcttgttgggccttctcgaggcgctttttgagcttgcggatctcc 914

                                                                       
Query: 273 tcgtcggatttcaccctggcctctgccgccaccctctctgcttctagccttgcattctgt 332
           || || |||   | ||| || || || |||| ||||||||||||||||||||||||||||
Sbjct: 913 tcatctgatcggagcctagcttcagctgccaacctctctgcttctagccttgcattctgt 854

                                                                       
Query: 333 tcttccatgagctgaacttgcagcttctccaccgtgatattcagcttttcctccaccatg 392
           ||||||||||| ||   ||||||||| || || |||||||||||||||||||||||||||
Sbjct: 853 tcttccatgagttgctgttgcagcttgtcaacagtgatattcagcttttcctccaccatg 794

                                                                       
Query: 393 gcagtaatgtttgcaagctgttcatcccgagttctgtggatctccttcttcaattcagtt 452
              |||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
Sbjct: 793 ttggtaatgtttgcaagctgttcatcccgagttctctggatctcctttttcaattcagat 734

                                                                       
Query: 453 atctggtcctctgaatatcccatagcatcatgaacctccatttctctatcatgcacctcc 512
           || || || |||| |||||| ||||||||||| ||||||  ||||||  ||||  | |||
Sbjct: 733 atttgctcttctgtatatccaatagcatcatgcacctcctgttctctggcatgtgcttcc 674

                                                                       
Query: 513 ttaaggcgagtgagcatttgatctgtaaatgggtttcctccattatttgcactaacagaa 572
           |||| || || |||||||||||||| |||||| |||||||||||||||| | | ||||| 
Sbjct: 673 ttaatgcaagcgagcatttgatctgaaaatggctttcctccattatttgtattcacagag 614

                            
Query: 573 tcaaccacatcaagcaa 589
           ||||| |||||||||||
Sbjct: 613 tcaacaacatcaagcaa 597
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>dbj|AK068385.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013146D08, full
            insert sequence
          Length = 1307

 Score =  295 bits (149), Expect = 9e-77
 Identities = 320/377 (84%)
 Strand = Plus / Minus

                                                                        
Query: 213  cggaactcctcgttttcctcctgggccctctcgagcctctccttgagcttgcggatctcc 272
            ||||| ||||| ||||| |  |||||| ||||||| | ||  ||||||||||||||||||
Sbjct: 1093 cggaattcctcattttcttgttgggccttctcgaggcgctttttgagcttgcggatctcc 1034

                                                                        
Query: 273  tcgtcggatttcaccctggcctctgccgccaccctctctgcttctagccttgcattctgt 332
            || || |||   | ||| || || || |||| ||||||||||||||||||||||||||||
Sbjct: 1033 tcatctgatcggagcctagcttcagctgccaacctctctgcttctagccttgcattctgt 974

                                                                        
Query: 333  tcttccatgagctgaacttgcagcttctccaccgtgatattcagcttttcctccaccatg 392
            ||||||||||| ||   ||||||||| || || |||||||||||||||||||||||||||
Sbjct: 973  tcttccatgagttgctgttgcagcttgtcaacagtgatattcagcttttcctccaccatg 914

                                                                        
Query: 393  gcagtaatgtttgcaagctgttcatcccgagttctgtggatctccttcttcaattcagtt 452
               |||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
Sbjct: 913  ttggtaatgtttgcaagctgttcatcccgagttctctggatctcctttttcaattcagat 854

                                                                        
Query: 453  atctggtcctctgaatatcccatagcatcatgaacctccatttctctatcatgcacctcc 512
            || || || |||| |||||| ||||||||||| ||||||  ||||||  ||||  | |||
Sbjct: 853  atttgctcttctgtatatccaatagcatcatgcacctcctgttctctggcatgtgcttcc 794

                                                                        
Query: 513  ttaaggcgagtgagcatttgatctgtaaatgggtttcctccattatttgcactaacagaa 572
            |||| || || |||||||||||||| |||||| |||||||||||||||| | | ||||| 
Sbjct: 793  ttaatgcaagcgagcatttgatctgaaaatggctttcctccattatttgtattcacagag 734

                             
Query: 573  tcaaccacatcaagcaa 589
            ||||| |||||||||||
Sbjct: 733  tcaacaacatcaagcaa 717
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>gb|BT017369.1| Zea mays clone EL01N0324H03.c mRNA sequence
          Length = 1374

 Score =  192 bits (97), Expect = 9e-46
 Identities = 315/387 (81%), Gaps = 3/387 (0%)
 Strand = Plus / Plus

                                                                       
Query: 203 cgccagcctccggaactcctcgttttcctcctgggccctctcgagcctctccttgagctt 262
           ||||| |||||||||||| || ||||||   || ||  ||| ||| ||||||||||||||
Sbjct: 379 cgccatcctccggaactcatcattttccatttgagctttcttgaggctctccttgagctt 438

                                                                       
Query: 263 gcggatctcctcgtcggatttcaccctggcctctgccgccaccctctctgcttctagcct 322
             |||||||| | || ||||||| ||| || ||   ||||||| |||| ||||| |||||
Sbjct: 439 ctggatctccgcttctgatttcagcctagcttcgtacgccaccttctcagcttccagcct 498

                                                                       
Query: 323 tgcattctgttcttccatgagctgaacttgcagcttctccaccgtgatattcagcttttc 382
           ||| ||||||||||||||||||||   ||||| ||||||||| |||   || | ||||||
Sbjct: 499 tgcgttctgttcttccatgagctgctgttgcaacttctccacagtgcagtttaacttttc 558

                                                                       
Query: 383 ctccaccatggcagtaatgtttgcaagctgttcatcccgagttctgtggatctccttctt 442
           ||| ||||||   || ||||  |||||||||||||||| |||||| || |||||||| ||
Sbjct: 559 ctcgaccatgttggttatgtgcgcaagctgttcatccctagttctatgaatctccttttt 618

                                                                       
Query: 443 caattcagttatctggtcctctgaatatcccatagcatcatgaacctccatttctctatc 502
           |||||||| |||||| || ||||||||||||   |    ||| |||||  ||||||||||
Sbjct: 619 caattcagatatctgctcatctgaatatccc---gaggtatgcacctctttttctctatc 675

                                                                       
Query: 503 atgcacctccttaaggcgagtgagcatttgatctgtaaatgggtttcctccattatttgc 562
           |||||||||||| | || ||||| ||||||||||| |||||| ||||||||||| |||||
Sbjct: 676 atgcacctccttgatgctagtgaacatttgatctgaaaatggttttcctccattttttgc 735

                                      
Query: 563 actaacagaatcaaccacatcaagcaa 589
           || ||| ||||| || ||||| |||||
Sbjct: 736 acaaactgaatccactacatcgagcaa 762
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  129 bits (65), Expect = 1e-26
 Identities = 149/177 (84%)
 Strand = Plus / Minus

                                                                            
Query: 213      cggaactcctcgttttcctcctgggccctctcgagcctctccttgagcttgcggatctcc 272
                ||||| ||||| ||||| |  |||||| ||||||| | ||  ||||||||||||||||||
Sbjct: 21107436 cggaattcctcattttcttgttgggccttctcgaggcgctttttgagcttgcggatctcc 21107377

                                                                            
Query: 273      tcgtcggatttcaccctggcctctgccgccaccctctctgcttctagccttgcattctgt 332
                || || |||   | ||| || || || |||| ||||||||||||||||||||||||||||
Sbjct: 21107376 tcatctgatcggagcctagcttcagctgccaacctctctgcttctagccttgcattctgt 21107317

                                                                         
Query: 333      tcttccatgagctgaacttgcagcttctccaccgtgatattcagcttttcctccacc 389
                ||||||||||| ||   ||||||||| || || ||||||||||||||||||||||||
Sbjct: 21107316 tcttccatgagttgctgttgcagcttgtcaacagtgatattcagcttttcctccacc 21107260



 Score =  119 bits (60), Expect = 1e-23
 Identities = 87/96 (90%)
 Strand = Plus / Minus

                                                                            
Query: 396      gtaatgtttgcaagctgttcatcccgagttctgtggatctccttcttcaattcagttatc 455
                |||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||| 
Sbjct: 21106196 gtaatgtttgcaagctgttcatcccgagttctctggatctcctttttcaattcagatatt 21106137

                                                    
Query: 456      tggtcctctgaatatcccatagcatcatgaacctcc 491
                || || |||| |||||| ||||||||||| ||||||
Sbjct: 21106136 tgctcttctgtatatccaatagcatcatgcacctcc 21106101



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 69/79 (87%)
 Strand = Plus / Minus

                                                                            
Query: 511      ccttaaggcgagtgagcatttgatctgtaaatgggtttcctccattatttgcactaacag 570
                |||||| || || |||||||||||||| |||||| |||||||||||||||| | | ||||
Sbjct: 21106010 ccttaatgcaagcgagcatttgatctgaaaatggctttcctccattatttgtattcacag 21105951

                                   
Query: 571      aatcaaccacatcaagcaa 589
                | ||||| |||||||||||
Sbjct: 21105950 agtcaacaacatcaagcaa 21105932
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>dbj|AP005808.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0038F20
          Length = 129595

 Score =  129 bits (65), Expect = 1e-26
 Identities = 149/177 (84%)
 Strand = Plus / Minus

                                                                         
Query: 213   cggaactcctcgttttcctcctgggccctctcgagcctctccttgagcttgcggatctcc 272
             ||||| ||||| ||||| |  |||||| ||||||| | ||  ||||||||||||||||||
Sbjct: 14152 cggaattcctcattttcttgttgggccttctcgaggcgctttttgagcttgcggatctcc 14093

                                                                         
Query: 273   tcgtcggatttcaccctggcctctgccgccaccctctctgcttctagccttgcattctgt 332
             || || |||   | ||| || || || |||| ||||||||||||||||||||||||||||
Sbjct: 14092 tcatctgatcggagcctagcttcagctgccaacctctctgcttctagccttgcattctgt 14033

                                                                      
Query: 333   tcttccatgagctgaacttgcagcttctccaccgtgatattcagcttttcctccacc 389
             ||||||||||| ||   ||||||||| || || ||||||||||||||||||||||||
Sbjct: 14032 tcttccatgagttgctgttgcagcttgtcaacagtgatattcagcttttcctccacc 13976



 Score =  119 bits (60), Expect = 1e-23
 Identities = 87/96 (90%)
 Strand = Plus / Minus

                                                                         
Query: 396   gtaatgtttgcaagctgttcatcccgagttctgtggatctccttcttcaattcagttatc 455
             |||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||| 
Sbjct: 12912 gtaatgtttgcaagctgttcatcccgagttctctggatctcctttttcaattcagatatt 12853

                                                 
Query: 456   tggtcctctgaatatcccatagcatcatgaacctcc 491
             || || |||| |||||| ||||||||||| ||||||
Sbjct: 12852 tgctcttctgtatatccaatagcatcatgcacctcc 12817



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 69/79 (87%)
 Strand = Plus / Minus

                                                                         
Query: 511   ccttaaggcgagtgagcatttgatctgtaaatgggtttcctccattatttgcactaacag 570
             |||||| || || |||||||||||||| |||||| |||||||||||||||| | | ||||
Sbjct: 12726 ccttaatgcaagcgagcatttgatctgaaaatggctttcctccattatttgtattcacag 12667

                                
Query: 571   aatcaaccacatcaagcaa 589
             | ||||| |||||||||||
Sbjct: 12666 agtcaacaacatcaagcaa 12648
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>gb|AY109813.1| Zea mays CL4777_1 mRNA sequence
          Length = 1239

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 181/225 (80%)
 Strand = Plus / Minus

                                                                        
Query: 203  cgccagcctccggaactcctcgttttcctcctgggccctctcgagcctctccttgagctt 262
            ||||| |||||||||||| || ||||||   || ||  ||| ||| ||||||||||||||
Sbjct: 1068 cgccatcctccggaactcatcattttccatttgagctttcttgaggctctccttgagctt 1009

                                                                        
Query: 263  gcggatctcctcgtcggatttcaccctggcctctgccgccaccctctctgcttctagcct 322
              |||||||| | || ||||||| ||| || ||   ||||||| |||| ||||| |||||
Sbjct: 1008 ctggatctccgcttctgatttcagcctagcttcgtacgccaccttctcagcttccagcct 949

                                                                        
Query: 323  tgcattctgttcttccatgagctgaacttgcagcttctccaccgtgatattcagcttttc 382
            ||| ||||||||||||||||||||   ||||| ||||||||| |||   || | ||||||
Sbjct: 948  tgcgttctgttcttccatgagctgctgttgcaacttctccacagtgcagtttaacttttc 889

                                                         
Query: 383  ctccaccatggcagtaatgtttgcaagctgttcatcccgagttct 427
            ||| ||||||   || ||||  |||||||||||||||| ||||||
Sbjct: 888  ctcgaccatgttggttatgtgcgcaagctgttcatccctagttct 844



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 53/59 (89%)
 Strand = Plus / Minus

                                                                      
Query: 496 ctctatcatgcacctccttaaggcgagtgagcatttgatctgtaaatgggtttcctcca 554
           ||||||||||||||||||| | || ||||| ||||||||||| |||||| |||||||||
Sbjct: 778 ctctatcatgcacctccttgatgctagtgaacatttgatctgaaaatggttttcctcca 720
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>gb|BT017593.1| Zea mays clone EL01N0430H01.c mRNA sequence
          Length = 401

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                    
Query: 406 caagctgttcatcccgagttctgtggatctccttcttcaat 446
           ||||||||||||||| |||||| || |||||||| ||||||
Sbjct: 41  caagctgttcatccctagttctatgaatctcctttttcaat 1
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>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                          
Query: 252     tccttgagcttgcggatctcctcgtcg 278
               |||||||||||||||||| ||||||||
Sbjct: 3883107 tccttgagcttgcggatcacctcgtcg 3883081
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>gb|AC118688.10| Mus musculus chromosome 5, clone RP23-302F24, complete sequence
          Length = 176001

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 537    gtaaatgggtttcctccattat 558
              ||||||||||||||||||||||
Sbjct: 129890 gtaaatgggtttcctccattat 129911
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>gb|AC123558.5| Mus musculus BAC clone RP23-336N16 from chromosome 5, complete sequence
          Length = 211763

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 537    gtaaatgggtttcctccattat 558
              ||||||||||||||||||||||
Sbjct: 210217 gtaaatgggtttcctccattat 210196
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>dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, complete genome
          Length = 5727534

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 352     gcagcttctccaccgtgatatt 373
               ||||||||||||||||||||||
Sbjct: 4993467 gcagcttctccaccgtgatatt 4993488
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 244     cgagcctctccttgagcttgcggatc 269
               ||||||| ||||||||||||||||||
Sbjct: 5057051 cgagcctgtccttgagcttgcggatc 5057026
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>gb|AC150162.1| Solanum demissum chromosome 5 clone PGEC160O2 map MAP_LOC, complete
              sequence
          Length = 125813

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 547    ttcctccattatttgcactaa 567
              |||||||||||||||||||||
Sbjct: 114684 ttcctccattatttgcactaa 114704
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>gb|AC146506.1| Solanum demissum chromosome 5 BAC PGEC989P08 genomic sequence, complete
             sequence
          Length = 121915

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 547   ttcctccattatttgcactaa 567
             |||||||||||||||||||||
Sbjct: 14259 ttcctccattatttgcactaa 14279
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>ref|XM_743999.1| Aspergillus fumigatus Af293 integral peroxisomal membrane protein
           (Afu7g04160) partial mRNA
          Length = 2028

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 245 gagcctctccttgagcttgcggatctcct 273
           |||||||||||||||||| ||||| ||||
Sbjct: 736 gagcctctccttgagcttacggatttcct 764
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>gb|AC117199.3| Mus musculus BAC clone RP23-134L22 from 10, complete sequence
          Length = 210514

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 546   tttcctccattatttgcacta 566
             |||||||||||||||||||||
Sbjct: 21689 tttcctccattatttgcacta 21669
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>gb|AC162908.4| Mus musculus BAC clone RP24-296A15 from chromosome 10, complete
             sequence
          Length = 170988

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 546   tttcctccattatttgcacta 566
             |||||||||||||||||||||
Sbjct: 76133 tttcctccattatttgcacta 76113
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>dbj|AK086631.1| Mus musculus 15 days embryo head cDNA, RIKEN full-length enriched
            library, clone:D930042P12 product:unclassifiable, full
            insert sequence
          Length = 2452

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 546  tttcctccattatttgcacta 566
            |||||||||||||||||||||
Sbjct: 2248 tttcctccattatttgcacta 2268
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 327     ttctgttcttccatgagctga 347
               |||||||||||||||||||||
Sbjct: 6835781 ttctgttcttccatgagctga 6835801



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 327     ttctgttcttccatgagctga 347
               |||||||||||||||||||||
Sbjct: 6621452 ttctgttcttccatgagctga 6621432
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 181     gaatagcgcacttgttggtcgccgccagc 209
               |||| ||||||||| ||||||||||||||
Sbjct: 4475938 gaattgcgcacttgctggtcgccgccagc 4475966
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>dbj|AP006857.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0002E10
          Length = 140486

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 327   ttctgttcttccatgagctga 347
             |||||||||||||||||||||
Sbjct: 86500 ttctgttcttccatgagctga 86520
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>dbj|AP005488.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0003D23
          Length = 151604

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 327   ttctgttcttccatgagctga 347
             |||||||||||||||||||||
Sbjct: 54799 ttctgttcttccatgagctga 54779
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>gb|BT016822.1| Zea mays clone Contig655 mRNA sequence
          Length = 1636

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 258 agcttgcggatctcctcgtc 277
           ||||||||||||||||||||
Sbjct: 374 agcttgcggatctcctcgtc 355
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>gb|AY704421.1| Gossypium anomalum clone 9G pathogenesis-related protein 10 (PR10)
           gene, partial cds
          Length = 427

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 529 tttgatctgtaaatgggttt 548
           ||||||||||||||||||||
Sbjct: 212 tttgatctgtaaatgggttt 231
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>gb|AC140468.2| Mus musculus BAC clone RP24-394C15 from chromosome 3, complete sequence
          Length = 168853

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 445    attcagttatctggtcctct 464
              ||||||||||||||||||||
Sbjct: 105682 attcagttatctggtcctct 105701
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>gb|AC131107.3| Mus musculus BAC clone RP23-339P15 from chromosome 8, complete sequence
          Length = 214894

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 311   tgcttctagccttgcattct 330
             ||||||||||||||||||||
Sbjct: 54850 tgcttctagccttgcattct 54869
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>gb|AC146417.3| Pan troglodytes BAC clone RP43-29B12 from 7, complete sequence
          Length = 196843

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 554   attatttgcactaacagaatcaac 577
             |||||||||||||||||| |||||
Sbjct: 65273 attatttgcactaacagactcaac 65296
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>gb|AC105166.16| Mus musculus chromosome 5, clone RP24-311D15, complete sequence
          Length = 145019

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 373   tcagcttttcctccaccatg 392
             ||||||||||||||||||||
Sbjct: 96007 tcagcttttcctccaccatg 95988
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>gb|AC161600.6| Mus musculus BAC clone RP23-350K3 from chromosome 3, complete sequence
          Length = 218929

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 445   attcagttatctggtcctct 464
             ||||||||||||||||||||
Sbjct: 56738 attcagttatctggtcctct 56757
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>ref|XM_382838.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG02662.1)
           partial mRNA
          Length = 1614

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 426 ctgtggatctccttcttcaa 445
           ||||||||||||||||||||
Sbjct: 956 ctgtggatctccttcttcaa 975
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>ref|XM_739424.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000531.01.0)
            partial mRNA
          Length = 2706

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 553  cattatttgcactaacagaatcaa 576
            |||||||||||||| |||||||||
Sbjct: 1048 cattatttgcactaccagaatcaa 1025
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>emb|AL390766.16| Human DNA sequence from clone RP13-348N17 on chromosome 10 Contains
             part of the PARD3 gene for par-3 partitioning defective 3
             homolog (C.elegans), complete sequence
          Length = 193131

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 554   attatttgcactaacagaatcaac 577
             |||||||||||||||||| |||||
Sbjct: 61964 attatttgcactaacagactcaac 61987
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>emb|CR388387.10| Zebrafish DNA sequence from clone DKEY-260J18 in linkage group 20,
           complete sequence
          Length = 138115

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 571 aatcaaccacatcaagcaacgttt 594
           ||||| ||||||||||||||||||
Sbjct: 645 aatcatccacatcaagcaacgttt 668
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>gb|AC092068.2| Homo sapiens chromosome 19 clone CTC-265F19, complete sequence
          Length = 75782

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 229   cctcctgggccctctcgagcctct 252
             ||||||||| ||||||||||||||
Sbjct: 45157 cctcctgggacctctcgagcctct 45134
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>gb|AC007437.16| Homo sapiens 12q22 BAC RPCI11-541G9 (Roswell Park Cancer Institute Human
              BAC Library) complete sequence
          Length = 179854

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 371    attcagcttttcctccacca 390
              ||||||||||||||||||||
Sbjct: 106937 attcagcttttcctccacca 106918
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>dbj|AK054105.1| Mus musculus 2 days pregnant adult female oviduct cDNA, RIKEN
            full-length enriched library, clone:E230019K20
            product:unclassifiable, full insert sequence
          Length = 1890

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 445  attcagttatctggtcctct 464
            ||||||||||||||||||||
Sbjct: 1140 attcagttatctggtcctct 1159
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>gb|AC157998.2| Mus musculus BAC clone RP23-27L18 from chromosome 9, complete sequence
          Length = 253762

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 362    caccgtgatattcagcttttcctc 385
              |||||| |||||||||||||||||
Sbjct: 125424 caccgtaatattcagcttttcctc 125447
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>ref|XM_321730.2| Anopheles gambiae str. PEST ENSANGP00000016819
           (ENSANGG00000014330), partial mRNA
          Length = 1410

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Minus

                                       
Query: 371 attcagcttttcctccaccatggcagta 398
           ||||||||||||||||||| ||||||||
Sbjct: 102 attcagcttttcctccacc-tggcagta 76
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>emb|CR749778.14| Zebrafish DNA sequence from clone DKEY-229D23 in linkage group 20,
             complete sequence
          Length = 41352

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 571   aatcaaccacatcaagcaacgttt 594
             ||||| ||||||||||||||||||
Sbjct: 39997 aatcatccacatcaagcaacgttt 40020
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>gb|AY104803.1| Zea mays PCO064157 mRNA sequence
          Length = 1631

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 258 agcttgcggatctcctcgtc 277
           ||||||||||||||||||||
Sbjct: 389 agcttgcggatctcctcgtc 370
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>gb|AC006275.1|AC006275 Homo sapiens chromosome 19, cosmid R32203, complete sequence
          Length = 39852

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 229   cctcctgggccctctcgagcctct 252
             ||||||||| ||||||||||||||
Sbjct: 23768 cctcctgggacctctcgagcctct 23745
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>emb|AL450023.21| Human DNA sequence from clone RP11-552J9 on chromosome X Contains a
             GAGE family member pseudogene, a novel SSX family protein,
             two SSX family pseudogenes, the SSX7 gene for X breakpoint
             7 synovial sarcoma, the SSX2 gene for X breakpoint 2
             synovial sarcoma, the SSX8 gene for X breakpoint 8
             synovial sarcoma, three pseudogenes similar to part of
             ornithine aminotransferase (gyrate atrophy) (OAT), three
             ornithine aminotransferase (gyrate atrophy) (OAT)
             pseudogenes, a S100 calcium binding protein A11
             (calgizzarin) (S100A11) pseudogene and the 5' end of the
             gene for a novel protein similar to the SSX family,
             complete sequence
          Length = 185532

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 134   attaacaagacatccggtaa 153
             ||||||||||||||||||||
Sbjct: 76496 attaacaagacatccggtaa 76477
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>gb|AC151997.2| Mus musculus BAC clone RP23-138O21 from 8, complete sequence
          Length = 201556

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 311   tgcttctagccttgcattct 330
             ||||||||||||||||||||
Sbjct: 21059 tgcttctagccttgcattct 21040
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>emb|AL121766.5|CNS01DSA Human chromosome 14 DNA sequence BAC R-412H8 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 158064

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 81     caaccaaagtattatctgttacta 104
              ||||||| ||||||||||||||||
Sbjct: 101638 caaccaaggtattatctgttacta 101615


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,507,790
Number of Sequences: 3902068
Number of extensions: 5507790
Number of successful extensions: 106873
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 106626
Number of HSP's gapped (non-prelim): 238
length of query: 620
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 597
effective length of database: 17,143,297,704
effective search space: 10234548729288
effective search space used: 10234548729288
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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