>TRME_ANASP (Q8YN91) tRNA modification GTPase trmE|
          Length = 459

 Score = 38.1 bits (87), Expect = 0.028
 Identities = 18/38 (47%), Positives = 25/38 (65%)
 Frame = -2

Query: 549 KPGVERSETPALGADMVIVTISAVDGWTEDDTKLIKRV 436
           K GVERS   A  AD+V++TI A  GWT  D ++ ++V
Sbjct: 288 KIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQV 325

>TRME_SYNY3 (P73839) Probable tRNA modification GTPase trmE|
          Length = 456

 Score = 37.4 bits (85), Expect = 0.048
 Identities = 17/36 (47%), Positives = 24/36 (66%)
 Frame = -2

Query: 543 GVERSETPALGADMVIVTISAVDGWTEDDTKLIKRV 436
           GVERS   A  AD+V++T+ A  GWTE D  + ++V
Sbjct: 290 GVERSRKAAQQADLVLLTVDAHQGWTEADQLIYEQV 325

>TRME_SYNP7 (Q8KPU2) tRNA modification GTPase trmE|
          Length = 462

 Score = 34.7 bits (78), Expect = 0.31
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = -2

Query: 543 GVERSETPALGADMVIVTISAVDGWTEDDTKLIKRV 436
           GVERS   A  AD+V++TI A  GW+ +D  + + V
Sbjct: 292 GVERSRRAAQSADLVLLTIDASAGWSAEDQTIWEAV 327

>DOCK9_HUMAN (Q9BZ29) Dedicator of cytokinesis protein 9 (Cdc42 guanine nucleotide|
            exchange factor zizimin 1)
          Length = 2069

 Score = 34.7 bits (78), Expect = 0.31
 Identities = 23/83 (27%), Positives = 43/83 (51%)
 Frame = +3

Query: 96   IHNDTTQI*RAVTTVIPAYRSLTPSRKWVQFHCLFFGYPTRLVEIVLCHCICCSKVKSVE 275
            +H + T   +++TT++        S K +++   FF     L++ +  H I  SKVK + 
Sbjct: 932  VHEELT---KSMTTILKPSADFLTSNKLLKYSWFFFDV---LIKSMAQHLIENSKVKLLR 985

Query: 276  NDRGPA*FERHHFPMQNLLNMLL 344
            N R PA    +H  ++ ++NML+
Sbjct: 986  NQRFPA---SYHHAVETVVNMLM 1005

>TRME_SYNEL (Q9X9T0) Probable tRNA modification GTPase trmE|
          Length = 469

 Score = 34.7 bits (78), Expect = 0.31
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -2

Query: 543 GVERSETPALGADMVIVTISAVDGWTEDDTKLIKRVMI 430
           GV+RS   AL AD++++ I A  GWT  D  +  ++ +
Sbjct: 291 GVQRSRQAALSADLILLVIDASQGWTAADQAIYDQLQL 328

>DOCK9_MOUSE (Q8BIK4) Dedicator of cytokinesis protein 9 (Cdc42 guanine nucleotide|
            exchange factor zizimin 1)
          Length = 2055

 Score = 33.5 bits (75), Expect = 0.70
 Identities = 22/83 (26%), Positives = 43/83 (51%)
 Frame = +3

Query: 96   IHNDTTQI*RAVTTVIPAYRSLTPSRKWVQFHCLFFGYPTRLVEIVLCHCICCSKVKSVE 275
            +H + T   +++TT++        S K +++   FF     L++ +  H I  +KVK + 
Sbjct: 941  VHEELT---KSMTTILKPSADFLTSNKLLKYSWFFFDV---LIKSMAQHLIENNKVKLLR 994

Query: 276  NDRGPA*FERHHFPMQNLLNMLL 344
            N R PA    +H  ++ ++NML+
Sbjct: 995  NQRFPA---SYHHAVETVVNMLM 1014

>TRME_GLOVI (Q7NHT3) tRNA modification GTPase trmE|
          Length = 453

 Score = 33.1 bits (74), Expect = 0.91
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -2

Query: 543 GVERSETPALGADMVIVTISAVDGWTEDDTKLIKRV 436
           G+ERS   A  AD+V++ I   +GWT  D+ +  +V
Sbjct: 287 GIERSHAAAREADLVLLVIDRTEGWTCADSDIFAQV 322

>TRME_SYNPX (Q7U3V6) tRNA modification GTPase trmE|
          Length = 450

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -2

Query: 543 GVERSETPALGADMVIVTISAVDGWTEDDTKLIKRV 436
           G+ RSE     AD+V++ +    GWT +D  L+ R+
Sbjct: 290 GIARSEEALATADVVLLVLDGHAGWTAEDAALLARI 325

>YHAX_BACSU (O07539) Stress response protein yhaX|
          Length = 288

 Score = 30.4 bits (67), Expect = 5.9
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
 Frame = +2

Query: 80  LHSKY---NTQRYNPNLKGSDNSNPSL*IFDPIQKMGSISLLVLWLPYQA 220
           LH KY   N ++ N NL G    +PS  IF P+Q + S+S L++  P  A
Sbjct: 106 LHEKYSIGNKKKVNSNLLGKALIHPSDPIFYPVQFVESLSDLLMDEPVSA 155

>TRME_PROMM (Q7V491) tRNA modification GTPase trmE|
          Length = 470

 Score = 30.0 bits (66), Expect = 7.7
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -2

Query: 543 GVERSETPALGADMVIVTISAVDGWTEDDTKLIKRVMID 427
           G++RS      AD+ ++      GWT DD  L+ ++  D
Sbjct: 296 GIDRSHQALAAADVAVLVFDLSLGWTADDAALLAQIPDD 334


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,810,112
Number of Sequences: 219361
Number of extensions: 1902566
Number of successful extensions: 4371
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4370
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7592921998
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)