Clone Name | rbasd23c05 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 135 bits (68), Expect = 2e-28 Identities = 92/100 (92%) Strand = Plus / Minus Query: 446 ataagtttagtgtcatcttcagtccacccatcaactgcacttattgtcacaataaccata 505 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || | Sbjct: 19451976 ataagtttagtgtcatcttcagtccacccatcaactgcacttattgtcataataatcaga 19451917 Query: 506 tcagctcctagtgcaggagtctctgatcgttctacacctg 545 |||||||| ||||||| || ||||||||||| ||||||| Sbjct: 19451916 tcagctcccagtgcagcagcttctgatcgttccacacctg 19451877 Score = 73.8 bits (37), Expect = 7e-10 Identities = 46/49 (93%) Strand = Plus / Minus Query: 446 ataagtttagtgtcatcttcagtccacccatcaactgcacttattgtca 494 ||||||||||| ||||||||||||||| |||||||| |||||||||||| Sbjct: 19464481 ataagtttagtatcatcttcagtccactcatcaactacacttattgtca 19464433 Score = 52.0 bits (26), Expect = 0.003 Identities = 35/38 (92%) Strand = Plus / Minus Query: 308 tcattttccaatgcagaatttgttgaatatgttgctca 345 ||||||||||||||| |||||| |||||||| |||||| Sbjct: 19452728 tcattttccaatgcaaaatttgctgaatatgctgctca 19452691
>dbj|AP004691.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0453D01 Length = 147461 Score = 135 bits (68), Expect = 2e-28 Identities = 92/100 (92%) Strand = Plus / Minus Query: 446 ataagtttagtgtcatcttcagtccacccatcaactgcacttattgtcacaataaccata 505 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || | Sbjct: 46733 ataagtttagtgtcatcttcagtccacccatcaactgcacttattgtcataataatcaga 46674 Query: 506 tcagctcctagtgcaggagtctctgatcgttctacacctg 545 |||||||| ||||||| || ||||||||||| ||||||| Sbjct: 46673 tcagctcccagtgcagcagcttctgatcgttccacacctg 46634 Score = 73.8 bits (37), Expect = 7e-10 Identities = 46/49 (93%) Strand = Plus / Minus Query: 446 ataagtttagtgtcatcttcagtccacccatcaactgcacttattgtca 494 ||||||||||| ||||||||||||||| |||||||| |||||||||||| Sbjct: 59238 ataagtttagtatcatcttcagtccactcatcaactacacttattgtca 59190 Score = 52.0 bits (26), Expect = 0.003 Identities = 35/38 (92%) Strand = Plus / Minus Query: 308 tcattttccaatgcagaatttgttgaatatgttgctca 345 ||||||||||||||| |||||| |||||||| |||||| Sbjct: 47485 tcattttccaatgcaaaatttgctgaatatgctgctca 47448
>ref|XM_482324.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1659 Score = 131 bits (66), Expect = 4e-27 Identities = 90/98 (91%) Strand = Plus / Minus Query: 446 ataagtttagtgtcatcttcagtccacccatcaactgcacttattgtcacaataaccata 505 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || | Sbjct: 1217 ataagtttagtgtcatcttcagtccacccatcaactgcacttattgtcataataatcaga 1158 Query: 506 tcagctcctagtgcaggagtctctgatcgttctacacc 543 |||||||| ||||||| || ||||||||||| ||||| Sbjct: 1157 tcagctcccagtgcagcagcttctgatcgttccacacc 1120 Score = 52.0 bits (26), Expect = 0.003 Identities = 35/38 (92%) Strand = Plus / Minus Query: 308 tcattttccaatgcagaatttgttgaatatgttgctca 345 ||||||||||||||| |||||| |||||||| |||||| Sbjct: 1659 tcattttccaatgcaaaatttgctgaatatgctgctca 1622
>gb|AY110758.1| Zea mays CL17045_3 mRNA sequence Length = 683 Score = 52.0 bits (26), Expect = 0.003 Identities = 41/46 (89%) Strand = Plus / Plus Query: 446 ataagtttagtgtcatcttcagtccacccatcaactgcacttattg 491 ||||||||||||||| | | |||||| ||||||||| ||||||||| Sbjct: 474 ataagtttagtgtcagcattagtccatccatcaactacacttattg 519
>gb|AF416722.1|AF416722 Oryza sativa subsp. indica phosphate transporter (OsPT1) mRNA, complete cds Length = 1830 Score = 50.1 bits (25), Expect = 0.010 Identities = 31/33 (93%) Strand = Plus / Plus Query: 607 acaaaattaaatatactagtcgtcaacccgtgc 639 ||||||||| | ||||||||||||||||||||| Sbjct: 1710 acaaaattacaaatactagtcgtcaacccgtgc 1742
>gb|AY355489.1| Canis familiaris isolate cOR10Q3 olfactory receptor family 10 subfamily Q-like gene, partial sequence Length = 616 Score = 48.1 bits (24), Expect = 0.041 Identities = 27/28 (96%) Strand = Plus / Plus Query: 122 aagggcagtgacaacagtaatcccagcc 149 ||||||||||||||||| |||||||||| Sbjct: 296 aagggcagtgacaacaggaatcccagcc 323
>ref|XM_540563.2| PREDICTED: Canis familiaris cOR10Q3 olfactory receptor family 10 subfamily Q-like (cOR10Q3), mRNA Length = 1002 Score = 48.1 bits (24), Expect = 0.041 Identities = 27/28 (96%) Strand = Plus / Minus Query: 122 aagggcagtgacaacagtaatcccagcc 149 ||||||||||||||||| |||||||||| Sbjct: 479 aagggcagtgacaacaggaatcccagcc 452
>gb|AC095036.2| Homo sapiens chromosome 1 clone RP11-320E2, complete sequence Length = 191499 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Minus Query: 389 caacaaaattgttgagaaaatga 411 ||||||||||||||||||||||| Sbjct: 176606 caacaaaattgttgagaaaatga 176584
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 46.1 bits (23), Expect = 0.16 Identities = 29/31 (93%) Strand = Plus / Minus Query: 612 attaaatatactagtcgtcaacccgtgcatt 642 |||||| ||||||| |||||||||||||||| Sbjct: 14996623 attaaacatactagccgtcaacccgtgcatt 14996593
>gb|AC089995.1|AC089995 Caenorhabditis briggsae cosmid CB035H18, complete sequence Length = 79459 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Minus Query: 593 ccattattcaatttacaaaatta 615 ||||||||||||||||||||||| Sbjct: 61735 ccattattcaatttacaaaatta 61713
>gb|AC102198.9| Mus musculus chromosome 15, clone RP24-499H13, complete sequence Length = 139134 Score = 46.1 bits (23), Expect = 0.16 Identities = 26/27 (96%) Strand = Plus / Minus Query: 334 atatgttgctcaaacagaaggcatgca 360 |||||||||||| |||||||||||||| Sbjct: 57881 atatgttgctcagacagaaggcatgca 57855
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 46.1 bits (23), Expect = 0.16 Identities = 29/31 (93%) Strand = Plus / Minus Query: 612 attaaatatactagtcgtcaacccgtgcatt 642 |||||| ||||||| |||||||||||||||| Sbjct: 14950906 attaaacatactagccgtcaacccgtgcatt 14950876
>emb|AL731873.5|CNS08C8D Oryza sativa chromosome 12, . BAC OSJNBa0068D20 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 174521 Score = 46.1 bits (23), Expect = 0.16 Identities = 29/31 (93%) Strand = Plus / Plus Query: 612 attaaatatactagtcgtcaacccgtgcatt 642 |||||| ||||||| |||||||||||||||| Sbjct: 85224 attaaacatactagccgtcaacccgtgcatt 85254
>gb|AC159502.12| Mus musculus 10 BAC RP23-113B7 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 226276 Score = 44.1 bits (22), Expect = 0.64 Identities = 22/22 (100%) Strand = Plus / Plus Query: 315 ccaatgcagaatttgttgaata 336 |||||||||||||||||||||| Sbjct: 123578 ccaatgcagaatttgttgaata 123599
>gb|CP000107.1| Ehrlichia canis str. Jake, complete genome Length = 1315030 Score = 44.1 bits (22), Expect = 0.64 Identities = 22/22 (100%) Strand = Plus / Plus Query: 316 caatgcagaatttgttgaatat 337 |||||||||||||||||||||| Sbjct: 628052 caatgcagaatttgttgaatat 628073
>gb|DQ366734.1| Uncultured Prochlorococcus marinus clone HOT0M-1A11 genomic sequence Length = 23461 Score = 44.1 bits (22), Expect = 0.64 Identities = 22/22 (100%) Strand = Plus / Plus Query: 237 tgccactgcatatgctgctcaa 258 |||||||||||||||||||||| Sbjct: 3401 tgccactgcatatgctgctcaa 3422
>gb|DQ366729.1| Uncultured Prochlorococcus marinus clone HF10-88H9 genomic sequence Length = 34302 Score = 44.1 bits (22), Expect = 0.64 Identities = 22/22 (100%) Strand = Plus / Minus Query: 237 tgccactgcatatgctgctcaa 258 |||||||||||||||||||||| Sbjct: 26007 tgccactgcatatgctgctcaa 25986
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 44.1 bits (22), Expect = 0.64 Identities = 22/22 (100%) Strand = Plus / Plus Query: 618 tatactagtcgtcaacccgtgc 639 |||||||||||||||||||||| Sbjct: 21087993 tatactagtcgtcaacccgtgc 21088014 Score = 42.1 bits (21), Expect = 2.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 607 acaaaattaaatatactagtcgtcaaccc 635 ||||||||| | ||||||||||||||||| Sbjct: 5813986 acaaaattacaaatactagtcgtcaaccc 5814014
>emb|AL731590.4|OSJN00233 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0035I04, complete sequence Length = 140890 Score = 44.1 bits (22), Expect = 0.64 Identities = 22/22 (100%) Strand = Plus / Plus Query: 618 tatactagtcgtcaacccgtgc 639 |||||||||||||||||||||| Sbjct: 133838 tatactagtcgtcaacccgtgc 133859
>emb|AL607002.3|OSJN00117 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0085H03, complete sequence Length = 132393 Score = 44.1 bits (22), Expect = 0.64 Identities = 22/22 (100%) Strand = Plus / Plus Query: 618 tatactagtcgtcaacccgtgc 639 |||||||||||||||||||||| Sbjct: 25379 tatactagtcgtcaacccgtgc 25400
>emb|BX936386.9| Zebrafish DNA sequence from clone CH211-232P21 in linkage group 3, complete sequence Length = 158520 Score = 44.1 bits (22), Expect = 0.64 Identities = 22/22 (100%) Strand = Plus / Plus Query: 672 taaaatatgaaattcaactttt 693 |||||||||||||||||||||| Sbjct: 122509 taaaatatgaaattcaactttt 122530
>emb|AL590997.13| Mouse DNA sequence from clone RP23-132J20 on chromosome 11, complete sequence Length = 200602 Score = 44.1 bits (22), Expect = 0.64 Identities = 22/22 (100%) Strand = Plus / Minus Query: 655 tttgataacctatgttataaaa 676 |||||||||||||||||||||| Sbjct: 143155 tttgataacctatgttataaaa 143134
>emb|Z68004.1|CEF47B10 Caenorhabditis elegans Cosmid F47B10, complete sequence Length = 30961 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 596 ttattcaatttacaaaattaa 616 ||||||||||||||||||||| Sbjct: 17263 ttattcaatttacaaaattaa 17243
>gb|AF536964.1| Oryza sativa (japonica cultivar-group) putative phosphate transporter OsPT4 gene, complete cds Length = 1925 Score = 42.1 bits (21), Expect = 2.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 607 acaaaattaaatatactagtcgtcaaccc 635 ||||||||| | ||||||||||||||||| Sbjct: 1710 acaaaattacaaatactagtcgtcaaccc 1738
>emb|AL391684.6| Human DNA sequence from clone RP11-441O15 on chromosome 10 Contains the CNNM1 gene for cyclin M1, the GOT1 gene for glutamic-oxaloacetic transaminase 1, soluble (aspartate aminotransferase 1), a novel gene and two CpG islands, complete sequence Length = 172792 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 682 aattcaacttttaattccatg 702 ||||||||||||||||||||| Sbjct: 61888 aattcaacttttaattccatg 61868
>emb|AL139087.13| Human DNA sequence from clone RP11-83D23 on chromosome 13q31.3-33.1, complete sequence Length = 170776 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 675 aatatgaaattcaacttttaa 695 ||||||||||||||||||||| Sbjct: 154376 aatatgaaattcaacttttaa 154356
>emb|AL023280.1|HS455H14 Human DNA sequence from clone RP3-455H14 on chromosome Xq21.3-22.3 Contains a 5'-nucleotidase (cytosolic II-like 1) (NT5C2L1) pseudogene, complete sequence Length = 159387 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 661 aacctatgttataaaatatga 681 ||||||||||||||||||||| Sbjct: 128480 aacctatgttataaaatatga 128460
>gb|U41547.2| Caenorhabditis elegans cosmid F22A3, complete sequence Length = 30097 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 673 aaaatatgaaattcaacttttaatt 697 |||||||||||||||||||| |||| Sbjct: 4060 aaaatatgaaattcaactttaaatt 4084
>emb|CR759783.7| Zebrafish DNA sequence from clone CH211-107D11 in linkage group 25, complete sequence Length = 26467 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 668 gttataaaatatgaaattcaa 688 ||||||||||||||||||||| Sbjct: 26074 gttataaaatatgaaattcaa 26054
>emb|BX005076.13| Zebrafish DNA sequence from clone DKEY-7N16 in linkage group 25, complete sequence Length = 207084 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 668 gttataaaatatgaaattcaa 688 ||||||||||||||||||||| Sbjct: 205134 gttataaaatatgaaattcaa 205154
>emb|AL731620.2|OSJN00270 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0003A12, complete sequence Length = 164425 Score = 42.1 bits (21), Expect = 2.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 607 acaaaattaaatatactagtcgtcaaccc 635 ||||||||| | ||||||||||||||||| Sbjct: 108972 acaaaattacaaatactagtcgtcaaccc 109000
>dbj|BA000026.2| Mycoplasma penetrans HF-2 DNA, complete genome Length = 1358633 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 317 aatgcagaatttgttgaatatgttg 341 ||||||||||||||||||| ||||| Sbjct: 351221 aatgcagaatttgttgaatctgttg 351197
>gb|AY569609.1| Oryza sativa (japonica cultivar-group) phosphate transporter 4 mRNA, complete cds Length = 1749 Score = 42.1 bits (21), Expect = 2.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 607 acaaaattaaatatactagtcgtcaaccc 635 ||||||||| | ||||||||||||||||| Sbjct: 1710 acaaaattacaaatactagtcgtcaaccc 1738
>dbj|AK063990.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-124-E03, full insert sequence Length = 2047 Score = 42.1 bits (21), Expect = 2.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 607 acaaaattaaatatactagtcgtcaaccc 635 ||||||||| | ||||||||||||||||| Sbjct: 1920 acaaaattacaaatactagtcgtcaaccc 1948
>gb|DQ277009.1|DQ277009S1 Mugil cephalus dopamine D2 receptor gene, promoter region and partial cds Length = 874 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 676 atatgaaattcaacttttaat 696 ||||||||||||||||||||| Sbjct: 398 atatgaaattcaacttttaat 378 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8,491,302 Number of Sequences: 3902068 Number of extensions: 8491302 Number of successful extensions: 164285 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 36 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 163895 Number of HSP's gapped (non-prelim): 390 length of query: 733 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 710 effective length of database: 17,143,297,704 effective search space: 12171741369840 effective search space used: 12171741369840 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)