>YJK8_YEAST (P42946) Hypothetical 41.5 kDa protein in GZF3-IME2 intergenic|
           region
          Length = 383

 Score = 30.4 bits (67), Expect = 1.7
 Identities = 17/38 (44%), Positives = 23/38 (60%)
 Frame = -1

Query: 386 IPPGIQSTDALLSAHQSGNRCRNCNL*SVSQSVHDPSS 273
           +P GI S ++LLS  QS N   N N  +++ S  DPSS
Sbjct: 308 VPSGIASQNSLLSGLQSANTIVNANE-TITTSTSDPSS 344

>POLG_HCV6A (Q5I2N3) Genome polyprotein [Contains: Core protein p21 (Capsid|
           protein C) (p21); Core protein p19; Envelope
           glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2
           (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-)
           (p23); Serine protease/N
          Length = 3018

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
 Frame = -2

Query: 391 DRSLPEFSPRMLCSLLISQVTDVVIVTCNQS----VSQSMIHHHQCSVDVRVCVSISQSV 224
           DR   E SP      L+   T + I+ C+ S    +S  +IH HQ  VDV+    +S SV
Sbjct: 660 DRDRIEMSP------LLFSTTQLAILPCSFSTMPALSTGLIHLHQNIVDVQYLYGVSSSV 713

>POLG_HCVJL (Q68798) Genome polyprotein [Contains: Core protein p21 (Capsid|
           protein C) (p21); Core protein p19; Envelope
           glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2
           (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-)
           (p23); Serine protease/N
          Length = 3021

 Score = 29.3 bits (64), Expect = 3.8
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
 Frame = -2

Query: 394 SDRSLPEFSPRMLCSLLISQVTDVVIVTCN----QSVSQSMIHHHQCSVDVRVCVSISQS 227
           +DR   E SP      L+   T++ I+ C+     ++S  +IH HQ  VDV+    +S S
Sbjct: 658 ADRDRIEMSP------LLFSTTELAILPCSFTTMPALSTGLIHLHQNVVDVQYLYGLSTS 711

Query: 226 V 224
           +
Sbjct: 712 I 712

>PEX13_HUMAN (Q92968) Peroxisomal membrane protein PEX13 (Peroxin-13)|
          Length = 403

 Score = 29.3 bits (64), Expect = 3.8
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -1

Query: 143 GKKKTSNKKNRVAESVCSVLCMYCDTTAAVTSKSWP 36
           G ++ S  ++  AES  +V C+  +  AA ++KSWP
Sbjct: 200 GLRRGSENEDLWAESEGTVACLGAEDRAATSAKSWP 235

>POLG_HCVBK (P26663) Genome polyprotein [Contains: Core protein p21 (Capsid|
           protein C) (p21); Core protein p19; Envelope
           glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2
           (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-)
           (p23); Serine protease/N
          Length = 3009

 Score = 28.9 bits (63), Expect = 5.0
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
 Frame = -2

Query: 391 DRSLPEFSPRMLCSLLISQVTDVVIVTCN----QSVSQSMIHHHQCSVDVRVCVSISQSV 224
           DR  PE SP +L +      T+  ++ C+     ++S  +IH HQ  VDV+    I  +V
Sbjct: 655 DRDRPELSPLLLST------TEWQVLPCSFTTLPALSTGLIHLHQNIVDVQYLYGIGSAV 708

>POLG_HCVT5 (O92529) Genome polyprotein [Contains: Core protein p21 (Capsid|
           protein C) (p21); Core protein p19; Envelope
           glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2
           (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-)
           (p23); Serine protease/N
          Length = 3018

 Score = 28.9 bits (63), Expect = 5.0
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
 Frame = -2

Query: 391 DRSLPEFSPRMLCSLLISQVTDVVIVTCN----QSVSQSMIHHHQCSVDVRVCVSISQSV 224
           DR   E SP      L+   T + I+ C+     ++S  +IH HQ  VDV+    +S S+
Sbjct: 660 DRDRIEMSP------LLFSTTQLAILPCSFTTMPALSTGLIHLHQNIVDVQYLYGVSSSI 713

>ECM2_HUMAN (O94769) Extracellular matrix protein 2 precursor (Matrix|
           glycoprotein SC1/ECM2)
          Length = 699

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -1

Query: 404 HGDQ*SIPPGIQSTDALLSAHQSGNRCRN 318
           H D  SIPPGIQ   AL     + N+ RN
Sbjct: 617 HNDLKSIPPGIQEMKALHFLRLNNNKIRN 645


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,324,487
Number of Sequences: 219361
Number of extensions: 841316
Number of successful extensions: 1761
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1756
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2228238148
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)