ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd22n04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_507492.1| PREDICTED Oryza sativa (japonica cultivar-group... 56 1e-04
2ref|XM_506853.2| PREDICTED Oryza sativa (japonica cultivar-group... 56 1e-04
3ref|XM_466588.1| Oryza sativa (japonica cultivar-group), mRNA 56 1e-04
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
5dbj|AP005385.3| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
6dbj|AP004124.3| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
7dbj|AK121891.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 1e-04
8dbj|AK101873.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 1e-04
9dbj|AK099539.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 1e-04
10emb|CT025576.8| Mouse DNA sequence from clone RP23-286F8 on chro... 42 2.2
11ref|XM_720574.1| Plasmodium yoelii yoelii str. 17XNL malate:quin... 42 2.2
12ref|XM_731640.1| Plasmodium chabaudi chabaudi hypothetical prote... 42 2.2
13ref|XM_737246.1| Plasmodium chabaudi chabaudi malate:quinone oxi... 42 2.2
14emb|AL445216.6| Human DNA sequence from clone RP11-204N9 on chro... 42 2.2
15emb|AL133388.7| Human DNA sequence from clone RP1-257B21 on chro... 42 2.2
16dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
17gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 2.2
18emb|AL928758.3|CNS08CBV Oryza sativa chromosome 12, . BAC OSJNBb... 42 2.2
19emb|AL954632.3|CNS08CD0 Oryza sativa chromosome 12, . BAC OSJNBa... 42 2.2
20gb|AY365533.1| HIV-1 isolate 96533 from Argentina pol protein (p... 42 2.2
21gb|AC166170.4| Mus musculus BAC clone RP23-174N23 from chromosom... 40 8.8
22gb|AC131079.11| Mus musculus chromosome 14, clone RP23-434L17, c... 40 8.8
23gb|AC146372.3| Pan troglodytes BAC clone RP43-59I19 from 7, comp... 40 8.8
24ref|XM_425767.1| PREDICTED: Gallus gallus similar to KIAA1555 pr... 40 8.8
25gb|AC098294.6| Rattus norvegicus 8 BAC CH230-1L23 (Children's Ho... 40 8.8
26ref|XM_607704.2| PREDICTED: Bos taurus similar to N-deacetylase/... 40 8.8
27gb|AF346289.1|AF346288S2 Mus musculus GA-binding protein alpha-s... 40 8.8
28gb|AC140314.2| Mus musculus BAC clone RP23-395L3 from chromosome... 40 8.8
29gb|AC109271.10| Mus musculus chromosome 1, clone RP23-353I19, co... 40 8.8
30gb|AC084158.2| Caenorhabditis elegans cosmid Y69A2AR, complete s... 40 8.8
31gb|AC133211.3| Mus musculus BAC clone RP23-36M18 from chromosome... 40 8.8
32gb|AC125487.3| Mus musculus BAC clone RP23-38L16 from 12, comple... 40 8.8
33gb|AC122287.4| Mus musculus BAC clone RP23-253A15 from 1, comple... 40 8.8
34emb|AL157895.8| Human DNA sequence from clone RP11-354E11 on chr... 40 8.8
35emb|AL109742.12|HSJ542O18 Human DNA sequence from clone RP4-542O... 40 8.8
36emb|AL109626.6|HSJ601K24 Human DNA sequence from clone RP4-601K2... 40 8.8
37gb|AC164162.2| Mus musculus BAC clone RP23-253E17 from chromosom... 40 8.8
38gb|AC060798.10| Homo sapiens chromosome 17, clone RP11-615P24, c... 40 8.8
39gb|AC182465.2| Pan troglodytes BAC clone CH251-502A24 from chrom... 40 8.8
40gb|AC096575.1| Homo sapiens BAC clone RP11-521E5 from 4, complet... 40 8.8
41gb|AC092295.2| Homo sapiens chromosome 19 clone CTD-2630F21, com... 40 8.8
42dbj|AK162675.1| Mus musculus adult female vagina cDNA, RIKEN ful... 40 8.8
43gb|AC155311.2| Mus musculus BAC clone RP23-407F7 from chromosome... 40 8.8
44gb|AC007281.3| Homo sapiens BAC clone RP11-457F14 from 2, comple... 40 8.8
45gb|AC009243.3|AC009243 Genomic sequence for Arabidopsis thaliana... 40 8.8
46gb|AC009756.9|AC009756 Homo sapiens, clone RP11-45P2, complete s... 40 8.8
47gb|AC114732.5| Homo sapiens BAC clone RP13-1012F16 from 2, compl... 40 8.8
48dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete ge... 40 8.8
49dbj|AB012047.1| Arabidopsis thaliana gene for sulfate transporte... 40 8.8
50gb|AC006031.2|AC006031 Homo sapiens BAC clone RP11-44G14 from 7q... 40 8.8
51gb|AC132456.5| Mus musculus BAC clone RP23-134L6 from 1, complet... 40 8.8
52gb|AC120423.13| Mus musculus chromosome 6, clone RP24-495D13, co... 40 8.8
53dbj|AP003679.2| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 8.8
54emb|AJ249412.1|MMU249412 Mus musculus partial PI3Kgamma gene for... 40 8.8
55emb|AL833796.4| Mouse DNA sequence from clone RP23-361A12 on chr... 40 8.8 
>ref|XM_507492.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1791_B03.42-1
            mRNA
          Length = 3100

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                       
Query: 16   cttcctcgactncagcaaaatttgaatttacagcaggaagcaa 58
            ||||||| ||| || ||||||| ||||||||||||||||||||
Sbjct: 3003 cttcctccactacatcaaaattcgaatttacagcaggaagcaa 2961
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>ref|XM_506853.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1791_B03.42-1
            mRNA
          Length = 3189

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                       
Query: 16   cttcctcgactncagcaaaatttgaatttacagcaggaagcaa 58
            ||||||| ||| || ||||||| ||||||||||||||||||||
Sbjct: 3004 cttcctccactacatcaaaattcgaatttacagcaggaagcaa 2962
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>ref|XM_466588.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2915

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                       
Query: 16   cttcctcgactncagcaaaatttgaatttacagcaggaagcaa 58
            ||||||| ||| || ||||||| ||||||||||||||||||||
Sbjct: 2730 cttcctccactacatcaaaattcgaatttacagcaggaagcaa 2688
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                           
Query: 16       cttcctcgactncagcaaaatttgaatttacagcaggaagcaa 58
                ||||||| ||| || ||||||| ||||||||||||||||||||
Sbjct: 23568753 cttcctccactacatcaaaattcgaatttacagcaggaagcaa 23568795
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>dbj|AP005385.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1791_B03
          Length = 166214

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                         
Query: 16     cttcctcgactncagcaaaatttgaatttacagcaggaagcaa 58
              ||||||| ||| || ||||||| ||||||||||||||||||||
Sbjct: 134436 cttcctccactacatcaaaattcgaatttacagcaggaagcaa 134478
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>dbj|AP004124.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OJ1669_F01
          Length = 140019

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                       
Query: 16   cttcctcgactncagcaaaatttgaatttacagcaggaagcaa 58
            ||||||| ||| || ||||||| ||||||||||||||||||||
Sbjct: 9853 cttcctccactacatcaaaattcgaatttacagcaggaagcaa 9895
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>dbj|AK121891.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033105C13, full
            insert sequence
          Length = 3190

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                       
Query: 16   cttcctcgactncagcaaaatttgaatttacagcaggaagcaa 58
            ||||||| ||| || ||||||| ||||||||||||||||||||
Sbjct: 3005 cttcctccactacatcaaaattcgaatttacagcaggaagcaa 2963
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>dbj|AK101873.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033070G06, full
            insert sequence
          Length = 2915

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                       
Query: 16   cttcctcgactncagcaaaatttgaatttacagcaggaagcaa 58
            ||||||| ||| || ||||||| ||||||||||||||||||||
Sbjct: 2730 cttcctccactacatcaaaattcgaatttacagcaggaagcaa 2688
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>dbj|AK099539.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013032G15, full
            insert sequence
          Length = 3101

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                       
Query: 16   cttcctcgactncagcaaaatttgaatttacagcaggaagcaa 58
            ||||||| ||| || ||||||| ||||||||||||||||||||
Sbjct: 3004 cttcctccactacatcaaaattcgaatttacagcaggaagcaa 2962
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>emb|CT025576.8| Mouse DNA sequence from clone RP23-286F8 on chromosome 16, complete
              sequence
          Length = 164971

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 56     caacaaaatatcacaaactgaaaag 80
              ||||||||||||| |||||||||||
Sbjct: 145220 caacaaaatatcataaactgaaaag 145196
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>ref|XM_720574.1| Plasmodium yoelii yoelii str. 17XNL malate:quinone oxidoreductase
           (PY05233) partial mRNA
          Length = 1497

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 283 catttgcagctgtacatggtg 303
           |||||||||||||||||||||
Sbjct: 944 catttgcagctgtacatggtg 964
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>ref|XM_731640.1| Plasmodium chabaudi chabaudi hypothetical protein (PC302398.00.0)
           partial mRNA
          Length = 885

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 283 catttgcagctgtacatggtg 303
           |||||||||||||||||||||
Sbjct: 629 catttgcagctgtacatggtg 649
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>ref|XM_737246.1| Plasmodium chabaudi chabaudi malate:quinone oxidoreductase,
           (PC001378.02.0) partial mRNA
          Length = 1413

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 283 catttgcagctgtacatggtg 303
           |||||||||||||||||||||
Sbjct: 860 catttgcagctgtacatggtg 880
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>emb|AL445216.6| Human DNA sequence from clone RP11-204N9 on chromosome 13 Contains the
             3' end of the PCDH17 gene for protocadherin 17 (PCH68
             PCDH68), complete sequence
          Length = 99292

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 67    cacaaactgaaaagagaagct 87
             |||||||||||||||||||||
Sbjct: 69707 cacaaactgaaaagagaagct 69727
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>emb|AL133388.7| Human DNA sequence from clone RP1-257B21 on chromosome 6q11.1-13
             Contains part of the COL19A1 gene for collagen XIX alpha 1
             and a ribosomal protein L37 (RPL37) pseudogene, complete
             sequence
          Length = 88428

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 56    caacaaaatatcacaaactga 76
             |||||||||||||||||||||
Sbjct: 79387 caacaaaatatcacaaactga 79407
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 60      aaaatatcacaaactgaaaagagaa 84
               |||||||||||||||||| ||||||
Sbjct: 2729877 aaaatatcacaaactgaacagagaa 2729853
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 60      aaaatatcacaaactgaaaagagaa 84
               |||||||||||||||||| ||||||
Sbjct: 2729821 aaaatatcacaaactgaacagagaa 2729797
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>emb|AL928758.3|CNS08CBV Oryza sativa chromosome 12, . BAC OSJNBb0075N21 of library OSJNBb from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 145539

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 60     aaaatatcacaaactgaaaagagaa 84
              |||||||||||||||||| ||||||
Sbjct: 140570 aaaatatcacaaactgaacagagaa 140594
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>emb|AL954632.3|CNS08CD0 Oryza sativa chromosome 12, . BAC OSJNBa0031E02 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 151878

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 60    aaaatatcacaaactgaaaagagaa 84
             |||||||||||||||||| ||||||
Sbjct: 98803 aaaatatcacaaactgaacagagaa 98779
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>gb|AY365533.1| HIV-1 isolate 96533 from Argentina pol protein (pol) gene, partial
           cds
          Length = 1497

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 418 gacaccaaatttgatagagggaatt 442
           ||||||||| |||||||||||||||
Sbjct: 126 gacaccaaaattgatagagggaatt 150
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>gb|AC166170.4| Mus musculus BAC clone RP23-174N23 from chromosome 6, complete sequence
          Length = 216743

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 546    aatttccccatgtgaagcat 565
              ||||||||||||||||||||
Sbjct: 215013 aatttccccatgtgaagcat 214994
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>gb|AC131079.11| Mus musculus chromosome 14, clone RP23-434L17, complete sequence
          Length = 203276

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 56     caacaaaatatcacaaactgaaaa 79
              |||||| |||||||||||||||||
Sbjct: 134264 caacaacatatcacaaactgaaaa 134287
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>gb|AC146372.3| Pan troglodytes BAC clone RP43-59I19 from 7, complete sequence
          Length = 148235

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 275   cacattttcatttgcagctg 294
             ||||||||||||||||||||
Sbjct: 77168 cacattttcatttgcagctg 77149
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>ref|XM_425767.1| PREDICTED: Gallus gallus similar to KIAA1555 protein (LOC428208),
           mRNA
          Length = 8484

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 3   aagcaacctaagccttcctc 22
           ||||||||||||||||||||
Sbjct: 742 aagcaacctaagccttcctc 761
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>gb|AC098294.6| Rattus norvegicus 8 BAC CH230-1L23 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 150308

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 309    aatctctatcttcccttcca 328
              ||||||||||||||||||||
Sbjct: 124593 aatctctatcttcccttcca 124574
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>ref|XM_607704.2| PREDICTED: Bos taurus similar to N-deacetylase/N-sulfotransferase
           (heparan glucosaminyl) 4 (LOC529260), partial mRNA
          Length = 1641

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 509 catcatcagcaatctcccca 528
           ||||||||||||||||||||
Sbjct: 879 catcatcagcaatctcccca 898
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>gb|AF346289.1|AF346288S2 Mus musculus GA-binding protein alpha-subunit (Gabpa) gene, exon 6
          Length = 1179

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 163 gtcctccagtatctccaagg 182
           ||||||||||||||||||||
Sbjct: 213 gtcctccagtatctccaagg 232
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>gb|AC140314.2| Mus musculus BAC clone RP23-395L3 from chromosome 12, complete sequence
          Length = 191322

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 59     caaaatatcacaaactgaaa 78
              ||||||||||||||||||||
Sbjct: 145329 caaaatatcacaaactgaaa 145348
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>gb|AC109271.10| Mus musculus chromosome 1, clone RP23-353I19, complete sequence
          Length = 221001

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 122    cacttggatcacagtgcaca 141
              ||||||||||||||||||||
Sbjct: 179086 cacttggatcacagtgcaca 179105
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>gb|AC084158.2| Caenorhabditis elegans cosmid Y69A2AR, complete sequence
          Length = 188616

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 60    aaaatatcacaaactgaaaa 79
             ||||||||||||||||||||
Sbjct: 64250 aaaatatcacaaactgaaaa 64269
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>gb|AC133211.3| Mus musculus BAC clone RP23-36M18 from chromosome 12, complete sequence
          Length = 238126

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 360    ctctatcctcccatccaagg 379
              ||||||||||||||||||||
Sbjct: 230990 ctctatcctcccatccaagg 230971
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>gb|AC125487.3| Mus musculus BAC clone RP23-38L16 from 12, complete sequence
          Length = 222288

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 360 ctctatcctcccatccaagg 379
           ||||||||||||||||||||
Sbjct: 250 ctctatcctcccatccaagg 231
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>gb|AC122287.4| Mus musculus BAC clone RP23-253A15 from 1, complete sequence
          Length = 226926

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 122    cacttggatcacagtgcaca 141
              ||||||||||||||||||||
Sbjct: 201188 cacttggatcacagtgcaca 201169
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>emb|AL157895.8| Human DNA sequence from clone RP11-354E11 on chromosome 10 Contains the
              5' end of a novel gene and a novel gene, complete sequence
          Length = 166317

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 268    atgaactcacattttcattt 287
              ||||||||||||||||||||
Sbjct: 150016 atgaactcacattttcattt 149997
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>emb|AL109742.12|HSJ542O18 Human DNA sequence from clone RP4-542O18 on chromosome 1p32.3-34.1
             Contains GSSs, complete sequence
          Length = 101453

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 56    caacaaaatatcacaaactg 75
             ||||||||||||||||||||
Sbjct: 50497 caacaaaatatcacaaactg 50478
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>emb|AL109626.6|HSJ601K24 Human DNA sequence from clone RP4-601K24 on chromosome 1p22.3-31.2,
             complete sequence
          Length = 129467

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 275   cacattttcatttgcagctg 294
             ||||||||||||||||||||
Sbjct: 66930 cacattttcatttgcagctg 66911
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>gb|AC164162.2| Mus musculus BAC clone RP23-253E17 from chromosome 16, complete
             sequence
          Length = 174250

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 163   gtcctccagtatctccaagg 182
             ||||||||||||||||||||
Sbjct: 21763 gtcctccagtatctccaagg 21744
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>gb|AC060798.10| Homo sapiens chromosome 17, clone RP11-615P24, complete sequence
          Length = 171994

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 53    aagcaacaaaatatcacaaactga 76
             ||||| ||||||||||||||||||
Sbjct: 83726 aagcatcaaaatatcacaaactga 83749
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>gb|AC182465.2| Pan troglodytes BAC clone CH251-502A24 from chromosome 1, complete
            sequence
          Length = 158746

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 275  cacattttcatttgcagctg 294
            ||||||||||||||||||||
Sbjct: 8340 cacattttcatttgcagctg 8321
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>gb|AC096575.1| Homo sapiens BAC clone RP11-521E5 from 4, complete sequence
          Length = 180423

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 57    aacaaaatatcacaaactga 76
             ||||||||||||||||||||
Sbjct: 39068 aacaaaatatcacaaactga 39049
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>gb|AC092295.2| Homo sapiens chromosome 19 clone CTD-2630F21, complete sequence
          Length = 165566

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 57    aacaaaatatcacaaactga 76
             ||||||||||||||||||||
Sbjct: 82883 aacaaaatatcacaaactga 82902
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>dbj|AK162675.1| Mus musculus adult female vagina cDNA, RIKEN full-length enriched
           library, clone:9930004C12 product:unclassifiable, full
           insert sequence
          Length = 3747

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 163 gtcctccagtatctccaagg 182
           ||||||||||||||||||||
Sbjct: 297 gtcctccagtatctccaagg 316
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>gb|AC155311.2| Mus musculus BAC clone RP23-407F7 from chromosome 12, complete sequence
          Length = 166104

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 59     caaaatatcacaaactgaaa 78
              ||||||||||||||||||||
Sbjct: 159303 caaaatatcacaaactgaaa 159284
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>gb|AC007281.3| Homo sapiens BAC clone RP11-457F14 from 2, complete sequence
          Length = 179343

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 553  ccatgtgaagcatcatcagctgaa 576
            |||||||||| |||||||||||||
Sbjct: 7968 ccatgtgaaggatcatcagctgaa 7945
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>gb|AC009243.3|AC009243 Genomic sequence for Arabidopsis thaliana BAC F28K19 from chromosome I,
             complete sequence
          Length = 110565

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 195   tttatcagattaatacacct 214
             ||||||||||||||||||||
Sbjct: 65589 tttatcagattaatacacct 65608
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>gb|AC009756.9|AC009756 Homo sapiens, clone RP11-45P2, complete sequence
          Length = 178624

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 57    aacaaaatatcacaaactga 76
             ||||||||||||||||||||
Sbjct: 88649 aacaaaatatcacaaactga 88668
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>gb|AC114732.5| Homo sapiens BAC clone RP13-1012F16 from 2, complete sequence
          Length = 91526

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 350   ttgcctcgagctctatcctcccatccaaggga 381
             |||||| ||||| ||| |||||||||||||||
Sbjct: 34337 ttgccttgagctttatgctcccatccaaggga 34368
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>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome
          Length = 3544776

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 567     atcagctgaaacaggcgatt 586
               ||||||||||||||||||||
Sbjct: 2217882 atcagctgaaacaggcgatt 2217863
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>dbj|AB012047.1| Arabidopsis thaliana gene for sulfate transporter, complete cds,
            clone:AST56
          Length = 6114

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 195  tttatcagattaatacacct 214
            ||||||||||||||||||||
Sbjct: 1706 tttatcagattaatacacct 1687
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>gb|AC006031.2|AC006031 Homo sapiens BAC clone RP11-44G14 from 7q11.23-21.1, complete sequence
          Length = 170624

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 275   cacattttcatttgcagctg 294
             ||||||||||||||||||||
Sbjct: 63406 cacattttcatttgcagctg 63387
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>gb|AC132456.5| Mus musculus BAC clone RP23-134L6 from 1, complete sequence
          Length = 204402

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 254    agttcatctgggagatgaactcac 277
              ||||||||||||| ||||||||||
Sbjct: 126050 agttcatctgggatatgaactcac 126073
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>gb|AC120423.13| Mus musculus chromosome 6, clone RP24-495D13, complete sequence
          Length = 158246

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 546    aatttccccatgtgaagcat 565
              ||||||||||||||||||||
Sbjct: 110313 aatttccccatgtgaagcat 110294
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>dbj|AP003679.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-634G3, complete
             sequences
          Length = 60000

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 57    aacaaaatatcacaaactga 76
             ||||||||||||||||||||
Sbjct: 37019 aacaaaatatcacaaactga 37038
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>emb|AJ249412.1|MMU249412 Mus musculus partial PI3Kgamma gene for phosphoinositide 3-kinase
            gamma, 5'UTR
          Length = 2206

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 59   caaaatatcacaaactgaaa 78
            ||||||||||||||||||||
Sbjct: 1124 caaaatatcacaaactgaaa 1105
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>emb|AL833796.4| Mouse DNA sequence from clone RP23-361A12 on chromosome X, complete
             sequence
          Length = 160626

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 266   agatgaactcacattttcat 285
             ||||||||||||||||||||
Sbjct: 28002 agatgaactcacattttcat 27983


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,247,546
Number of Sequences: 3902068
Number of extensions: 6247546
Number of successful extensions: 124594
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 124324
Number of HSP's gapped (non-prelim): 270
length of query: 645
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 622
effective length of database: 17,143,297,704
effective search space: 10663131171888
effective search space used: 10663131171888
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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