>LRRN3_RAT (Q9ESY6) Leucine-rich repeats neuronal protein 3 precursor|
           (Neuronal leucine-rich repeat protein 3) (NLRR-3)
          Length = 707

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +2

Query: 2   FNITHYIRTTSDYVCLDVPSIYTFSDDYRRNQKRKAVDH 118
           +N+TH   +T   +C+D+P+IY  S     N   K+++H
Sbjct: 578 YNLTHLKPSTEYKICIDIPTIYQKSRKQCVNVTTKSLEH 616

>LRRN3_MOUSE (Q8CBC6) Leucine-rich repeats neuronal protein 3 precursor|
           (Neuronal leucine-rich repeat protein 3) (NLRR-3)
          Length = 707

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +2

Query: 2   FNITHYIRTTSDYVCLDVPSIYTFSDDYRRNQKRKAVDH 118
           +N+TH   +T   +C+D+P++Y  S     N   K+++H
Sbjct: 578 YNLTHLKPSTEYKICIDIPTVYQKSRKQCVNVTTKSLEH 616

>PDXT_HAEDU (Q7VL87) Glutamine amidotransferase subunit pdxT (EC 2.6.-.-)|
           (Glutamine amidotransferase glutaminase subunit pdxT)
          Length = 189

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 22/64 (34%), Positives = 26/64 (40%), Gaps = 9/64 (14%)
 Frame = +2

Query: 200 NTTGQLTHSTMPPLTRSCLTDNHPHVFISMPVVT---------PEPQPNVVVVMMGVMIS 352
           N  G+   S   PLT S L    P VFI  P +T          E Q NVV+   G   +
Sbjct: 109 NAFGRQIDSFQTPLTVSGLDKPFPAVFIRAPYITEVGENVEVLAEWQGNVVLAKQGHFFA 168

Query: 353 CRTH 364
           C  H
Sbjct: 169 CAFH 172

>YNO4_YEAST (P53907) Hypothetical 84.2 kDa protein in MFA2-MEP2 intergenic|
           region
          Length = 740

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 29/80 (36%), Positives = 36/80 (45%)
 Frame = +2

Query: 245 RSCLTDNHPHVFISMPVVTPEPQPNVVVVMMGVMISCRTHRPFKREKPSSLTLSNFILQL 424
           R CLT   P      P  TP  +   VV M    +S     PF  E  SS   +NFILQ+
Sbjct: 120 RPCLTSVKP------PSYTPSVEHYTVVSMKMEKLS-----PF--ENASSRLWNNFILQI 166

Query: 425 SSTKGAI*SSITSLVQIFKN 484
           +ST+    S   SL +  KN
Sbjct: 167 NSTQINFYSIDDSLTRHIKN 186

>AMDR_ASPOR (Q06157) Acetamidase regulatory protein|
          Length = 775

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = -3

Query: 232 HCRVSELPCSVRVVGKHCCTPHSRKGNKLDRRISRRKLMVNCLSFLVPAVV 80
           HC   ++ C  R+VG  C   + R   K D RI  +K  +   S L P  +
Sbjct: 28  HCHRRKVRCDARIVGLPC--SNCRSAGKADCRIHEKKKRLAVRSILDPVPI 76

>AMDR_ASPFU (Q4WK35) Acetamidase regulatory protein|
          Length = 772

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = -3

Query: 232 HCRVSELPCSVRVVGKHCCTPHSRKGNKLDRRISRRKLMVNCLSFLVPAVV 80
           HC   ++ C  R+VG  C   + R   K D RI  +K  +   S L P  +
Sbjct: 29  HCHRRKVRCDARIVGLPC--SNCRSSGKTDCRIHEKKKRLAVRSILNPVPI 77


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,307,071
Number of Sequences: 219361
Number of extensions: 1728036
Number of successful extensions: 4407
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4406
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4757699440
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)