ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd23c01 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK104775.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-B08, full insert sequence Length = 1237 Score = 291 bits (147), Expect = 1e-75 Identities = 204/223 (91%) Strand = Plus / Minus Query: 342 ttatgatttcgtgcaggacccatagaccttttaaacgggagaagccgtcctctcttactc 401 |||||||||| |||||||||||||||||| | |||||||||||||| |||||||| || | Sbjct: 412 ttatgatttcatgcaggacccatagacctctcaaacgggagaagccatcctctctaaccc 353 Query: 402 tctcaaacttcatcctccagctttcatcaaccaaaggtgccatttgatccagcatcacca 461 ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||| Sbjct: 352 tctcaaacttcgtcctccagctttcatcaaccaaaggtgccatttgatccaacataacca 293 Query: 462 gtctagtccaaattttcaagaatattaatccaagtgcccaatcctgatacagcagaaaaa 521 | |||||||| ||||| ||||||||||||||||| |||||||||||||||| ||| |||| Sbjct: 292 gcctagtccatatttttaagaatattaatccaagagcccaatcctgatacaacaggaaaa 233 Query: 522 ctgggctctcgtcgataggcaccctcatgggtacaatcaccag 564 | || |||||||| ||||||||||||||||||||||| ||||| Sbjct: 232 ccggactctcgtcaataggcaccctcatgggtacaatgaccag 190
>dbj|AK065890.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013043L16, full insert sequence Length = 1222 Score = 291 bits (147), Expect = 1e-75 Identities = 204/223 (91%) Strand = Plus / Minus Query: 342 ttatgatttcgtgcaggacccatagaccttttaaacgggagaagccgtcctctcttactc 401 |||||||||| |||||||||||||||||| | |||||||||||||| |||||||| || | Sbjct: 514 ttatgatttcatgcaggacccatagacctctcaaacgggagaagccatcctctctaaccc 455 Query: 402 tctcaaacttcatcctccagctttcatcaaccaaaggtgccatttgatccagcatcacca 461 ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||| Sbjct: 454 tctcaaacttcgtcctccagctttcatcaaccaaaggtgccatttgatccaacataacca 395 Query: 462 gtctagtccaaattttcaagaatattaatccaagtgcccaatcctgatacagcagaaaaa 521 | |||||||| ||||| ||||||||||||||||| |||||||||||||||| ||| |||| Sbjct: 394 gcctagtccatatttttaagaatattaatccaagagcccaatcctgatacaacaggaaaa 335 Query: 522 ctgggctctcgtcgataggcaccctcatgggtacaatcaccag 564 | || |||||||| ||||||||||||||||||||||| ||||| Sbjct: 334 ccggactctcgtcaataggcaccctcatgggtacaatgaccag 292
>dbj|AK063162.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-D07, full insert sequence Length = 878 Score = 291 bits (147), Expect = 1e-75 Identities = 204/223 (91%) Strand = Plus / Minus Query: 342 ttatgatttcgtgcaggacccatagaccttttaaacgggagaagccgtcctctcttactc 401 |||||||||| |||||||||||||||||| | |||||||||||||| |||||||| || | Sbjct: 308 ttatgatttcatgcaggacccatagacctctcaaacgggagaagccatcctctctaaccc 249 Query: 402 tctcaaacttcatcctccagctttcatcaaccaaaggtgccatttgatccagcatcacca 461 ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||| Sbjct: 248 tctcaaacttcgtcctccagctttcatcaaccaaaggtgccatttgatccaacataacca 189 Query: 462 gtctagtccaaattttcaagaatattaatccaagtgcccaatcctgatacagcagaaaaa 521 | |||||||| ||||| ||||||||||||||||| |||||||||||||||| ||| |||| Sbjct: 188 gcctagtccatatttttaagaatattaatccaagagcccaatcctgatacaacaggaaaa 129 Query: 522 ctgggctctcgtcgataggcaccctcatgggtacaatcaccag 564 | || |||||||| ||||||||||||||||||||||| ||||| Sbjct: 128 ccggactctcgtcaataggcaccctcatgggtacaatgaccag 86
>dbj|AK059723.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-201-A08, full insert sequence Length = 1237 Score = 291 bits (147), Expect = 1e-75 Identities = 204/223 (91%) Strand = Plus / Minus Query: 342 ttatgatttcgtgcaggacccatagaccttttaaacgggagaagccgtcctctcttactc 401 |||||||||| |||||||||||||||||| | |||||||||||||| |||||||| || | Sbjct: 412 ttatgatttcatgcaggacccatagacctctcaaacgggagaagccatcctctctaaccc 353 Query: 402 tctcaaacttcatcctccagctttcatcaaccaaaggtgccatttgatccagcatcacca 461 ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||| Sbjct: 352 tctcaaacttcgtcctccagctttcatcaaccaaaggtgccatttgatccaacataacca 293 Query: 462 gtctagtccaaattttcaagaatattaatccaagtgcccaatcctgatacagcagaaaaa 521 | |||||||| ||||| ||||||||||||||||| |||||||||||||||| ||| |||| Sbjct: 292 gcctagtccatatttttaagaatattaatccaagagcccaatcctgatacaacaggaaaa 233 Query: 522 ctgggctctcgtcgataggcaccctcatgggtacaatcaccag 564 | || |||||||| ||||||||||||||||||||||| ||||| Sbjct: 232 ccggactctcgtcaataggcaccctcatgggtacaatgaccag 190
>gb|AY105117.1| Zea mays PCO141701 mRNA sequence Length = 1381 Score = 240 bits (121), Expect = 4e-60 Identities = 202/229 (88%) Strand = Plus / Minus Query: 342 ttatgatttcgtgcaggacccatagaccttttaaacgggagaagccgtcctctcttactc 401 |||| ||||| || |||||||| ||||| ||||||||||||||||| || ||||| |||| Sbjct: 666 ttataatttcatggaggacccacagaccctttaaacgggagaagccatcgtctctaactc 607 Query: 402 tctcaaacttcatcctccagctttcatcaaccaaaggtgccatttgatccagcatcacca 461 |||||||||| |||||||||||||||||||||||||||||| ||||||| ||| |||| Sbjct: 606 tctcaaactttgacctccagctttcatcaaccaaaggtgccatctgatccaacataacca 547 Query: 462 gtctagtccaaattttcaagaatattaatccaagtgcccaatcctgatacagcagaaaaa 521 |||||||||| ||||||||||||||||| || |||||||||||||| |||| | || | Sbjct: 546 gtctagtccatattttcaagaatattaaccccagtgcccaatcctggtacaataagaaga 487 Query: 522 ctgggctctcgtcgataggcaccctcatgggtacaatcaccagcagctc 570 | |||||||| || ||||||||||||||||||||||| ||||||||||| Sbjct: 486 cagggctctcatcaataggcaccctcatgggtacaatgaccagcagctc 438
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 165 bits (83), Expect = 2e-37 Identities = 104/111 (93%) Strand = Plus / Plus Query: 342 ttatgatttcgtgcaggacccatagaccttttaaacgggagaagccgtcctctcttactc 401 |||||||||| |||||||||||||||||| | |||||||||||||| |||||||| || | Sbjct: 25585190 ttatgatttcatgcaggacccatagacctctcaaacgggagaagccatcctctctaaccc 25585249 Query: 402 tctcaaacttcatcctccagctttcatcaaccaaaggtgccatttgatcca 452 ||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 25585250 tctcaaacttcgtcctccagctttcatcaaccaaaggtgccatttgatcca 25585300 Score = 133 bits (67), Expect = 7e-28 Identities = 97/107 (90%) Strand = Plus / Plus Query: 458 accagtctagtccaaattttcaagaatattaatccaagtgcccaatcctgatacagcaga 517 ||||| |||||||| ||||| ||||||||||||||||| |||||||||||||||| ||| Sbjct: 25585422 accagcctagtccatatttttaagaatattaatccaagagcccaatcctgatacaacagg 25585481 Query: 518 aaaactgggctctcgtcgataggcaccctcatgggtacaatcaccag 564 ||||| || |||||||| ||||||||||||||||||||||| ||||| Sbjct: 25585482 aaaaccggactctcgtcaataggcaccctcatgggtacaatgaccag 25585528
>dbj|AP003573.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0523F01 Length = 146419 Score = 165 bits (83), Expect = 2e-37 Identities = 104/111 (93%) Strand = Plus / Plus Query: 342 ttatgatttcgtgcaggacccatagaccttttaaacgggagaagccgtcctctcttactc 401 |||||||||| |||||||||||||||||| | |||||||||||||| |||||||| || | Sbjct: 103507 ttatgatttcatgcaggacccatagacctctcaaacgggagaagccatcctctctaaccc 103566 Query: 402 tctcaaacttcatcctccagctttcatcaaccaaaggtgccatttgatcca 452 ||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 103567 tctcaaacttcgtcctccagctttcatcaaccaaaggtgccatttgatcca 103617 Score = 133 bits (67), Expect = 7e-28 Identities = 97/107 (90%) Strand = Plus / Plus Query: 458 accagtctagtccaaattttcaagaatattaatccaagtgcccaatcctgatacagcaga 517 ||||| |||||||| ||||| ||||||||||||||||| |||||||||||||||| ||| Sbjct: 103739 accagcctagtccatatttttaagaatattaatccaagagcccaatcctgatacaacagg 103798 Query: 518 aaaactgggctctcgtcgataggcaccctcatgggtacaatcaccag 564 ||||| || |||||||| ||||||||||||||||||||||| ||||| Sbjct: 103799 aaaaccggactctcgtcaataggcaccctcatgggtacaatgaccag 103845
>dbj|AP003571.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0458E02 Length = 154458 Score = 165 bits (83), Expect = 2e-37 Identities = 104/111 (93%) Strand = Plus / Plus Query: 342 ttatgatttcgtgcaggacccatagaccttttaaacgggagaagccgtcctctcttactc 401 |||||||||| |||||||||||||||||| | |||||||||||||| |||||||| || | Sbjct: 8635 ttatgatttcatgcaggacccatagacctctcaaacgggagaagccatcctctctaaccc 8694 Query: 402 tctcaaacttcatcctccagctttcatcaaccaaaggtgccatttgatcca 452 ||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 8695 tctcaaacttcgtcctccagctttcatcaaccaaaggtgccatttgatcca 8745 Score = 133 bits (67), Expect = 7e-28 Identities = 97/107 (90%) Strand = Plus / Plus Query: 458 accagtctagtccaaattttcaagaatattaatccaagtgcccaatcctgatacagcaga 517 ||||| |||||||| ||||| ||||||||||||||||| |||||||||||||||| ||| Sbjct: 8867 accagcctagtccatatttttaagaatattaatccaagagcccaatcctgatacaacagg 8926 Query: 518 aaaactgggctctcgtcgataggcaccctcatgggtacaatcaccag 564 ||||| || |||||||| ||||||||||||||||||||||| ||||| Sbjct: 8927 aaaaccggactctcgtcaataggcaccctcatgggtacaatgaccag 8973
>gb|DQ124014.1| Coffea arabica x Coffea canephora clone HT-SSH3-A02 mRNA sequence Length = 294 Score = 83.8 bits (42), Expect = 6e-13 Identities = 120/146 (82%) Strand = Plus / Minus Query: 380 gagaagccgtcctctcttactctctcaaacttcatcctccagctttcatcaaccaaaggt 439 |||||||| ||||| || ||||||||||| || || | ||| || ||||| |||||||| Sbjct: 176 gagaagccatcctccctgactctctcaaattttattcgccaactctcatctaccaaaggc 117 Query: 440 gccatttgatccagcatcaccagtctagtccaaattttcaagaatattaatccaagtgcc 499 || |||||||||||| ||||| ||||||||||| || | || || |||||||| ||| Sbjct: 116 aacacttgatccagcatgaccagcctagtccaaatcttaagaaagatcaatccaagggcc 57 Query: 500 caatcctgatacagcagaaaaactgg 525 ||||||||||||| || |||||||| Sbjct: 56 caatcctgatacaaaaggaaaactgg 31
>ref|NM_119571.2| Arabidopsis thaliana protein binding / ubiquitin-protein ligase/ zinc ion binding AT4G34100 mRNA, complete cds Length = 3279 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Minus Query: 446 tgatccagcatcaccagtctagtccaaattttcaagaatattaatccaagtgcccaatcc 505 ||||||||||| |||||||||||||| |||||||| || || | ||||| ||||| || Sbjct: 2801 tgatccagcattaccagtctagtccagattttcaaaaagatgagcccaagagcccagtct 2742 Query: 506 tgatacag 513 |||||||| Sbjct: 2741 tgatacag 2734
>dbj|AP004237.1| Proteus vulgaris plasmid Rts1 DNA, complete sequence Length = 217182 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Plus Query: 293 gttgttacccctgaacctcagc 314 |||||||||||||||||||||| Sbjct: 163782 gttgttacccctgaacctcagc 163803
>gb|AY173250.1| Drosophila nigrodunni strain THW-V en gene, intron 2 Length = 371 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 391 ctctcttactctctcaaactt 411 ||||||||||||||||||||| Sbjct: 311 ctctcttactctctcaaactt 331
>gb|AY173248.1| Drosophila nigrodunni strain 15182-2311.1 en gene, intron 2 Length = 371 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 391 ctctcttactctctcaaactt 411 ||||||||||||||||||||| Sbjct: 311 ctctcttactctctcaaactt 331
>gb|AY173221.1| Drosophila arawakana arawakana strain 15182-2261.2 en gene, intron 2 Length = 369 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 391 ctctcttactctctcaaactt 411 ||||||||||||||||||||| Sbjct: 311 ctctcttactctctcaaactt 331
>gb|AY173219.1| Drosophila arawakana kittensis strain WG-2 en gene, intron 2 Length = 369 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 391 ctctcttactctctcaaactt 411 ||||||||||||||||||||| Sbjct: 309 ctctcttactctctcaaactt 329
>gb|AC161231.7| Mus musculus chromosome 5, clone RP24-241P24, complete sequence Length = 193682 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 87 gcaggaaccaaaaaagaaagg 107 ||||||||||||||||||||| Sbjct: 86534 gcaggaaccaaaaaagaaagg 86554
>gb|AC102876.31| Mus musculus chromosome 1, clone RP24-492P7, complete sequence Length = 185929 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 472 aattttcaagaatattaatccaagt 496 ||||||||| ||||||||||||||| Sbjct: 129524 aattttcaataatattaatccaagt 129500 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 472 aattttcaagaatattaatccaag 495 ||||||||| |||||||||||||| Sbjct: 130144 aattttcaataatattaatccaag 130121
>emb|AJ235270.1|RPXX01 Rickettsia prowazekii strain Madrid E, complete genome; segment 1/4 Length = 282610 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 509 tacagcagaaaaactgggctc 529 ||||||||||||||||||||| Sbjct: 175574 tacagcagaaaaactgggctc 175554
>gb|AC134985.11| Mus musculus chromosome 5, clone RP24-432L3, complete sequence Length = 199782 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 87 gcaggaaccaaaaaagaaagg 107 ||||||||||||||||||||| Sbjct: 147113 gcaggaaccaaaaaagaaagg 147133
>gb|AC169384.2| Mus musculus chromosome 5, clone RP23-231C16, complete sequence Length = 204569 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 87 gcaggaaccaaaaaagaaagg 107 ||||||||||||||||||||| Sbjct: 8175 gcaggaaccaaaaaagaaagg 8195
>ref|XM_638349.1| Dictyostelium discoideum adhesion modulation protein A (DDB0185088), partial mRNA Length = 855 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 10 tacacattacatcagaacaa 29 |||||||||||||||||||| Sbjct: 676 tacacattacatcagaacaa 657
>ref|NM_192504.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1560 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 277 cttcatcagcatgccggttg 296 |||||||||||||||||||| Sbjct: 739 cttcatcagcatgccggttg 720
>gb|AY368388.1| Thelymitra sp. Chase O-489 maturase K-like (matK) gene, partial sequence; chloroplast gene for chloroplast product Length = 1799 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 ggaaccaaaaaagaaaggca 109 |||||||||||||||||||| Sbjct: 45 ggaaccaaaaaagaaaggca 26
>emb|Z81058.1|CEF11E6 Caenorhabditis elegans Cosmid F11E6, complete sequence Length = 36958 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 464 ctagtccaaattttcaagaatatt 487 |||||||| ||||||||||||||| Sbjct: 14901 ctagtccagattttcaagaatatt 14924
>emb|AL390718.11| Human DNA sequence from clone RP11-502H18 on chromosome 1 Contains the 3' end of a novel gene, a novel gene, the QSCN6 gene for quiescin Q6 and a CpG island, complete sequence Length = 176123 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 390 cctctcttactctctcaaacttca 413 |||||||||||||||||| ||||| Sbjct: 58942 cctctcttactctctcaagcttca 58965
>emb|AL161584.2|ATCHRIV80 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 80 Length = 192861 Score = 40.1 bits (20), Expect = 7.7 Identities = 47/56 (83%) Strand = Plus / Minus Query: 458 accagtctagtccaaattttcaagaatattaatccaagtgcccaatcctgatacag 513 |||||||||||||| |||||||| || || | ||||| ||||| || |||||||| Sbjct: 167850 accagtctagtccagattttcaaaaagatgagcccaagagcccagtcttgatacag 167795
>emb|AL021961.2|ATF28A23 Arabidopsis thaliana DNA chromosome 4, BAC clone F28A23 (ESSA project) Length = 94091 Score = 40.1 bits (20), Expect = 7.7 Identities = 47/56 (83%) Strand = Plus / Minus Query: 458 accagtctagtccaaattttcaagaatattaatccaagtgcccaatcctgatacag 513 |||||||||||||| |||||||| || || | ||||| ||||| || |||||||| Sbjct: 37801 accagtctagtccagattttcaaaaagatgagcccaagagcccagtcttgatacag 37746
>gb|AC013242.8| Homo sapiens chromosome 10 clone RP11-315E23, complete sequence Length = 170174 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 461 agtctagtccaaattttcaa 480 |||||||||||||||||||| Sbjct: 134291 agtctagtccaaattttcaa 134310
>emb|BX649412.8| Zebrafish DNA sequence from clone DKEY-116G10 in linkage group 1, complete sequence Length = 78932 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 469 ccaaattttcaagaatattaatcc 492 |||||||||||||||||| ||||| Sbjct: 73429 ccaaattttcaagaatatgaatcc 73406
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 547 catgggtacaatcaccagca 566 |||||||||||||||||||| Sbjct: 26038667 catgggtacaatcaccagca 26038648
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 cttcatcagcatgccggttg 296 |||||||||||||||||||| Sbjct: 27082533 cttcatcagcatgccggttg 27082552 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 152 attcccctttctactatgtg 171 |||||||||||||||||||| Sbjct: 14581440 attcccctttctactatgtg 14581421
>gb|AC116960.2| Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence Length = 182870 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 tacacattacatcagaacaa 29 |||||||||||||||||||| Sbjct: 84377 tacacattacatcagaacaa 84396
>dbj|AP003284.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0671D01 Length = 163006 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 cttcatcagcatgccggttg 296 |||||||||||||||||||| Sbjct: 141364 cttcatcagcatgccggttg 141383
>dbj|AP003444.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1164G11 Length = 142699 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 152 attcccctttctactatgtg 171 |||||||||||||||||||| Sbjct: 62817 attcccctttctactatgtg 62798
>dbj|AP003275.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0514H03 Length = 167230 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 152 attcccctttctactatgtg 171 |||||||||||||||||||| Sbjct: 140753 attcccctttctactatgtg 140734
>dbj|AK121703.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033074F07, full insert sequence Length = 3878 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 547 catgggtacaatcaccagca 566 |||||||||||||||||||| Sbjct: 1772 catgggtacaatcaccagca 1791
>dbj|AK072645.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023131B07, full insert sequence Length = 1576 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 277 cttcatcagcatgccggttg 296 |||||||||||||||||||| Sbjct: 509 cttcatcagcatgccggttg 490
>dbj|AK072283.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023016B15, full insert sequence Length = 1862 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 277 cttcatcagcatgccggttg 296 |||||||||||||||||||| Sbjct: 855 cttcatcagcatgccggttg 836
>dbj|AK065025.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001G10, full insert sequence Length = 3843 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 547 catgggtacaatcaccagca 566 |||||||||||||||||||| Sbjct: 1784 catgggtacaatcaccagca 1803
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 547 catgggtacaatcaccagca 566 |||||||||||||||||||| Sbjct: 25966843 catgggtacaatcaccagca 25966824
>emb|AL713940.4|CNS07YPM Oryza sativa chromosome 12, . BAC OJ1327_A12 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 161806 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 547 catgggtacaatcaccagca 566 |||||||||||||||||||| Sbjct: 73004 catgggtacaatcaccagca 73023
>gb|AC153023.2| Mus musculus 6 BAC RP23-253M3 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 160526 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 471 aaattttcaagaatattaat 490 |||||||||||||||||||| Sbjct: 9225 aaattttcaagaatattaat 9206
>gb|AC153990.2| Mus musculus 6 BAC RP24-293L1 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 172768 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 471 aaattttcaagaatattaat 490 |||||||||||||||||||| Sbjct: 49515 aaattttcaagaatattaat 49534
>emb|AJ310077.1|TIX310077 Thelymitra ixioides chloroplast matK pseudogene Length = 1196 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 ggaaccaaaaaagaaaggca 109 |||||||||||||||||||| Sbjct: 45 ggaaccaaaaaagaaaggca 26
>emb|AJ310076.1|TCA310076 Thelymitra carnea chloroplast matK pseudogene Length = 1797 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 ggaaccaaaaaagaaaggca 109 |||||||||||||||||||| Sbjct: 45 ggaaccaaaaaagaaaggca 26
>emb|AJ310002.1|CCA310002 Calochilus campestris chloroplast matK pseudogene Length = 1795 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 ggaaccaaaaaagaaaggca 109 |||||||||||||||||||| Sbjct: 45 ggaaccaaaaaagaaaggca 26
>dbj|AB071295.1| Oryza sativa OsARF6b mRNA for auxin response factor 6b, partial cds Length = 2643 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 547 catgggtacaatcaccagca 566 |||||||||||||||||||| Sbjct: 894 catgggtacaatcaccagca 913 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,193,976 Number of Sequences: 3902068 Number of extensions: 5193976 Number of successful extensions: 134176 Number of sequences better than 10.0: 47 Number of HSP's better than 10.0 without gapping: 48 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 133950 Number of HSP's gapped (non-prelim): 225 length of query: 570 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 547 effective length of database: 17,143,297,704 effective search space: 9377383844088 effective search space used: 9377383844088 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
