Clone Name | rbasd22m23 |
---|---|
Clone Library Name | barley_pub |
>HMGL_WHEAT (P40621) HMG1/2-like protein| Length = 161 Score = 58.2 bits (139), Expect = 2e-08 Identities = 27/28 (96%), Positives = 28/28 (100%) Frame = -3 Query: 548 ESEKAPFVAKANKLKGEYNKAIAAYNKG 465 ESEKAP+VAKANKLKGEYNKAIAAYNKG Sbjct: 86 ESEKAPYVAKANKLKGEYNKAIAAYNKG 113
>MNB1B_MAIZE (P27347) DNA-binding protein MNB1B (HMG1-like protein)| Length = 157 Score = 53.1 bits (126), Expect = 5e-07 Identities = 25/28 (89%), Positives = 27/28 (96%) Frame = -3 Query: 548 ESEKAPFVAKANKLKGEYNKAIAAYNKG 465 ES+KAP+VAKANKLK EYNKAIAAYNKG Sbjct: 85 ESDKAPYVAKANKLKLEYNKAIAAYNKG 112
>HMGL_IPONI (P40619) HMG1/2-like protein| Length = 144 Score = 37.4 bits (85), Expect = 0.028 Identities = 16/26 (61%), Positives = 20/26 (76%) Frame = -3 Query: 545 SEKAPFVAKANKLKGEYNKAIAAYNK 468 +EKAPF++KA K K EY K + AYNK Sbjct: 81 AEKAPFISKAEKRKQEYEKNLQAYNK 106
>HMGL_SOYBN (P26585) HMG1/2-like protein (SB11 protein)| Length = 152 Score = 36.6 bits (83), Expect = 0.048 Identities = 16/27 (59%), Positives = 21/27 (77%) Frame = -3 Query: 548 ESEKAPFVAKANKLKGEYNKAIAAYNK 468 ++EKAP+VAK+ K K EY K + AYNK Sbjct: 88 DAEKAPYVAKSEKRKVEYEKNMRAYNK 114
>HMGL_VICFA (P40620) HMG1/2-like protein| Length = 149 Score = 32.3 bits (72), Expect = 0.90 Identities = 15/27 (55%), Positives = 18/27 (66%) Frame = -3 Query: 548 ESEKAPFVAKANKLKGEYNKAIAAYNK 468 E EKAP+V +A K K EY + AYNK Sbjct: 89 EEEKAPYVDRALKKKEEYEITLQAYNK 115
>HMGB3_HUMAN (O15347) High mobility group protein B3 (High mobility group| protein 4) (HMG-4) (High mobility group protein 2a) (HMG-2a) Length = 199 Score = 31.6 bits (70), Expect = 1.5 Identities = 13/25 (52%), Positives = 18/25 (72%) Frame = -3 Query: 548 ESEKAPFVAKANKLKGEYNKAIAAY 474 +SEK P++ KA KLK +Y K +A Y Sbjct: 135 DSEKQPYITKAAKLKEKYEKDVADY 159
>HMGB3_MOUSE (O54879) High mobility group protein B3 (High mobility group| protein 4) (HMG-4) (High mobility group protein 2a) (HMG-2a) Length = 199 Score = 30.8 bits (68), Expect = 2.6 Identities = 13/25 (52%), Positives = 18/25 (72%) Frame = -3 Query: 548 ESEKAPFVAKANKLKGEYNKAIAAY 474 ++EK P+V KA KLK +Y K +A Y Sbjct: 135 DNEKQPYVTKAAKLKEKYEKDVADY 159
>HDC_HUMAN (Q9UBI9) Headcase protein homolog (hHDC)| Length = 543 Score = 30.0 bits (66), Expect = 4.5 Identities = 13/22 (59%), Positives = 15/22 (68%) Frame = -2 Query: 123 GAPAGGVLLAVLGCMSSAAGVP 58 GA AGG L A GC ++AAG P Sbjct: 37 GAAAGGALAAAAGCGAAAAGAP 58
>HMGT_ONCMY (P07746) High mobility group-T protein (HMG-T) (HMG-T1) (HMG-1)| Length = 204 Score = 29.3 bits (64), Expect = 7.7 Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 1/27 (3%) Frame = -3 Query: 542 EKAPFVAKANKLKGEYNKAIAAY-NKG 465 +K P+ KA++LK +Y K I AY NKG Sbjct: 139 DKVPYEKKASRLKEKYEKDITAYRNKG 165
>LPXK_NITWN (Q3SPI3) Tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) (Lipid A| 4'-kinase) Length = 337 Score = 29.3 bits (64), Expect = 7.7 Identities = 16/36 (44%), Positives = 20/36 (55%) Frame = -2 Query: 162 RPSVLL*RIALPVGAPAGGVLLAVLGCMSSAAGVPL 55 RPS LL R+ +PVGA G + L AGVP+ Sbjct: 9 RPSSLLSRLLIPVGALYGAIAARRLSRTGLRAGVPV 44 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,377,897 Number of Sequences: 219361 Number of extensions: 963558 Number of successful extensions: 3161 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 3020 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3160 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4430660157 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)