ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd23b20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TRYB1_RAT (P27435) Tryptase precursor (EC 3.4.21.59) (Mast cell ... 33 0.68
2C76C2_ARATH (O64637) Cytochrome P450 76C2 (EC 1.14.-.-) 31 2.0
3TERT_HUMAN (O14746) Telomerase reverse transcriptase (EC 2.7.7.4... 30 3.4

>TRYB1_RAT (P27435) Tryptase precursor (EC 3.4.21.59) (Mast cell protease 7)|
           (MMCP-7) (Tryptase alpha/beta-1) (Tryptase, skin)
          Length = 273

 Score = 32.7 bits (73), Expect = 0.68
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = +3

Query: 183 TLPPTTKKWRTSAANSSSTLSIAQPFPFEEQR---SANLLCSMKNYLSLN 323
           T P  T  W T   N ++ +S+  PFP EE +     N LC +K +  LN
Sbjct: 146 TFPSGTLCWVTGWGNINNDVSLPPPFPLEEVQVPIVENRLCDLKYHKGLN 195



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>C76C2_ARATH (O64637) Cytochrome P450 76C2 (EC 1.14.-.-)|
          Length = 512

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
 Frame = +3

Query: 36  GSLKTLLV*C*QLQEPEKQQPALETNRQVTSGSTN*HCTERLNGEK-NLNTLPPTTKKWR 212
           GSL T++V       PE  +  L T  Q+ S  T  +    +N +K ++  LPP++ +WR
Sbjct: 78  GSLNTVVV-----TSPEAAREVLRTYDQILSSRTPTNSIRSINHDKVSVVWLPPSSSRWR 132

Query: 213 TSAANSSSTLSIAQPFPFEEQRSANLLCSMKNYLS 317
                S++ L   Q     +    N +  + +++S
Sbjct: 133 LLRKLSATQLFSPQRIEATKTLRENKVKELVSFMS 167



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>TERT_HUMAN (O14746) Telomerase reverse transcriptase (EC 2.7.7.49) (Telomerase|
            catalytic subunit) (HEST2) (Telomerase-associated protein
            2) (TP2)
          Length = 1132

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 3/95 (3%)
 Frame = +1

Query: 226  TQAQPFPLLNPFHLRSNAALTCCAV*KTISLLTSCTAILLEYSLRRMWHHR*KIRGES*G 405
            T  QP+      HL+  + L    V +  S L   ++ L +  LR M HH  +IRG+S  
Sbjct: 767  TDLQPYMRQFVAHLQETSPLRDAVVIEQSSSLNEASSGLFDVFLRFMCHHAVRIRGKSYV 826

Query: 406  SIAG-SLGQQIATAPCKPRLLWG*LXND--SGARR 501
               G   G  ++T  C   L +G + N   +G RR
Sbjct: 827  QCQGIPQGSILSTLLCS--LCYGDMENKLFAGIRR 859


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,110,172
Number of Sequences: 219361
Number of extensions: 1170191
Number of successful extensions: 2634
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2633
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4373119116
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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