ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd22m18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BT009571.1| Triticum aestivum clone wre1n.pk0021.e3:fis, full... 167 4e-38
2gb|AY177404.1| Secale cereale O-methyltransferase mRNA, complete... 74 5e-10
3gb|AC138195.2| Oryza sativa (japonica cultivar-group) chromosome... 66 1e-07
4dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
5gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 66 1e-07
6gb|AC135793.4| Oryza sativa chromosome 11 BAC clone OSJNBb0017P1... 58 3e-05
7dbj|AK106179.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 3e-05
8dbj|AK061247.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 3e-05
9dbj|AK059770.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 3e-05
10gb|AY107519.1| Zea mays PCO078033 mRNA sequence 56 1e-04
11gb|AC112208.3| Oryza sativa (japonica cultivar-group) chromosome... 54 4e-04
12gb|AC135258.2| Oryza sativa (japonica cultivar-group) chromosome... 52 0.002
13gb|AC147811.2| Oryza sativa (japonica cultivar-group) chromosome... 52 0.002
14gb|AC137843.15| Mus musculus chromosome 9, clone RP23-413J12, co... 42 1.7
15dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005 42 1.7
16ref|XM_506587.1| PREDICTED Oryza sativa (japonica cultivar-group... 40 6.6
17gb|AC024777.1| Caenorhabditis elegans cosmid Y42H9AR, complete s... 40 6.6
18gb|AC121981.3| Mus musculus BAC clone RP24-290K9 from 5, complet... 40 6.6
19emb|X69947.1|PHPMADS2 P.hybrida mRNA for pmads 2 40 6.6
20emb|X71417.1|PHFBP3 P.hybrida fbp3 mRNA 40 6.6
21dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
22dbj|AP004316.4| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
23dbj|AK108661.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.6
24gb|AC007544.4| Homo sapiens 12 BAC RP11-12D15 (Roswell Park Canc... 40 6.6
25gb|AY103669.1| Zea mays PCO073521 mRNA sequence 40 6.6
26gb|AF033496.1|AF033496 Zea mays herbicide safener binding protei... 40 6.6
27emb|AL840639.3| Mouse DNA sequence from clone RP23-156E17 on chr... 40 6.6

>gb|BT009571.1| Triticum aestivum clone wre1n.pk0021.e3:fis, full insert mRNA
           sequence
          Length = 770

 Score =  167 bits (84), Expect = 4e-38
 Identities = 141/160 (88%)
 Strand = Plus / Minus

                                                                       
Query: 153 cttatggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtcgc 212
           ||||||||||||||||||||| |||||||   || |||||||||||||||||||||| ||
Sbjct: 513 cttatggatagacctcgatgacacctcgatggccaagtttcttgacaatcttatagttgc 454

                                                                       
Query: 213 taaatcctgcttttgtaaagattgtgctccagtcattttcatctcgttgccgtccttttg 272
           |||| |||||||| |||||||| |||||||| || |||||||| |||||||||||| | |
Sbjct: 453 taaaccctgctttcgtaaagatcgtgctccactccttttcatcccgttgccgtcctctgg 394

                                                   
Query: 273 tacataccaacatgagcatatccatcaacagttcggtttc 312
           ||||||  ||||| ||||| ||||||| ||||||||||||
Sbjct: 393 tacatatgaacatcagcatgtccatcagcagttcggtttc 354



 Score =  111 bits (56), Expect = 2e-21
 Identities = 89/100 (89%)
 Strand = Plus / Minus

                                                                       
Query: 362 tttccccccatttcgcgggacggaatggccttcttgcattgagacaggatattgatgcaa 421
           ||||| |||||||| ||||| || |||||||||||||||||||  ||||| |||||||||
Sbjct: 304 tttcctcccatttctcgggaaggtatggccttcttgcattgagcgaggatcttgatgcaa 245

                                                   
Query: 422 tcttcgtcactccagaagtgcagaacaagcttaagcatga 461
           || ||||| ||||||||||| ||||||||||| |||||||
Sbjct: 244 tcctcgtcgctccagaagtgtagaacaagcttgagcatga 205



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>gb|AY177404.1| Secale cereale O-methyltransferase mRNA, complete cds
          Length = 1373

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 58/65 (89%)
 Strand = Plus / Minus

                                                                        
Query: 161  tagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtcgctaaatcct 220
            ||||||||||| | |||||| || ||||||||||||||||| || ||||||||||| |||
Sbjct: 1132 tagacctcgataacacctcgtgcacccagtttcttgacaattttgtagtcgctaaaccct 1073

                 
Query: 221  gcttt 225
            |||||
Sbjct: 1072 gcttt 1068



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>gb|AC138195.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0005P21, complete sequence
          Length = 147381

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 57/65 (87%)
 Strand = Plus / Minus

                                                                         
Query: 159   gatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtcgctaaatc 218
             |||||||||||| || | ||||||| || |||||||| |||||||||||||| || ||||
Sbjct: 64473 gatagacctcgaagacagctcgagcaccaagtttcttcacaatcttatagtcactgaatc 64414

                  
Query: 219   ctgct 223
             |||||
Sbjct: 64413 ctgct 64409



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 65/77 (84%)
 Strand = Plus / Minus

                                                                          
Query: 149    caatcttatggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatag 208
              |||||||| |||||||||||||  |  ||||||||||| ||  |||| ||||||||||||
Sbjct: 123169 caatcttagggatagacctcgaaaactcctcgagctccaagcatcttcacaatcttatag 123110

                               
Query: 209    tcgctaaatcctgcttt 225
              ||  | |||||||||||
Sbjct: 123109 tcattgaatcctgcttt 123093



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 44/51 (86%)
 Strand = Plus / Minus

                                                                 
Query: 249    tttcatctcgttgccgtccttttgtacataccaacatgagcatatccatca 299
              |||||||||| ||||| ||| |||||   |||||||| |||||||||||||
Sbjct: 123069 tttcatctcgctgccggcctcttgtattgaccaacatcagcatatccatca 123019



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 57/65 (87%)
 Strand = Plus / Plus

                                                                            
Query: 159      gatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtcgctaaatc 218
                |||||||||||| || | ||||||| || |||||||| |||||||||||||| || ||||
Sbjct: 11549315 gatagacctcgaagacagctcgagcaccaagtttcttcacaatcttatagtcactgaatc 11549374

                     
Query: 219      ctgct 223
                |||||
Sbjct: 11549375 ctgct 11549379



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 65/77 (84%)
 Strand = Plus / Plus

                                                                            
Query: 149      caatcttatggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatag 208
                |||||||| |||||||||||||  |  ||||||||||| ||  |||| ||||||||||||
Sbjct: 11490619 caatcttagggatagacctcgaaaactcctcgagctccaagcatcttcacaatcttatag 11490678

                                 
Query: 209      tcgctaaatcctgcttt 225
                ||  | |||||||||||
Sbjct: 11490679 tcattgaatcctgcttt 11490695



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 60/71 (84%)
 Strand = Plus / Plus

                                                                            
Query: 155      tatggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtcgcta 214
                ||||| |||||||| | ||  |||||||||||||||||||| ||||| || ||||| || 
Sbjct: 11353886 tatgggtagacctcaaagacgcctcgagctcccagtttcttcacaatattgtagtcactg 11353945

                           
Query: 215      aatcctgcttt 225
                || ||||||||
Sbjct: 11353946 aagcctgcttt 11353956



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 59/70 (84%)
 Strand = Plus / Plus

                                                                           
Query: 150     aatcttatggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagt 209
               ||||| |||||||||||||||  | | |||||||||| || |||||| | ||||||||||
Sbjct: 7137521 aatctcatggatagacctcgaacacagctcgagctccgagcttcttggcgatcttatagt 7137580

                         
Query: 210     cgctaaatcc 219
               | || |||||
Sbjct: 7137581 cactgaatcc 7137590



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 56/65 (86%), Gaps = 1/65 (1%)
 Strand = Plus / Plus

                                                                            
Query: 159      gatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtcgctaaatc 218
                |||||||||| |  ||| ||||||||||||||| ||| |||||||||||||| || || |
Sbjct: 11352004 gatagacctcaaatatagctcgagctcccagtt-cttcacaatcttatagtcactgaagc 11352062

                     
Query: 219      ctgct 223
                |||||
Sbjct: 11352063 ctgct 11352067



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 44/51 (86%)
 Strand = Plus / Plus

                                                                   
Query: 249      tttcatctcgttgccgtccttttgtacataccaacatgagcatatccatca 299
                |||||||||| ||||| ||| |||||   |||||||| |||||||||||||
Sbjct: 11490719 tttcatctcgctgccggcctcttgtattgaccaacatcagcatatccatca 11490769



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                     
Query: 158      ggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtc 210
                ||||||||||| |||| ||  |||| ||||| |||||| |||||||| |||||
Sbjct: 11294531 ggatagacctcaatgacacaccgaggtcccaatttcttcacaatcttgtagtc 11294583



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                                    
Query: 158      ggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagt 209
                ||||||||||| | || | ||||||||| || ||| || |||||||||||||
Sbjct: 11329598 ggatagacctcaaagacagctcgagctctcaattttttcacaatcttatagt 11329649



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 57/65 (87%)
 Strand = Plus / Plus

                                                                            
Query: 159      gatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtcgctaaatc 218
                |||||||||||| || | ||||||| || |||||||| |||||||||||||| || ||||
Sbjct: 11628504 gatagacctcgaagacagctcgagcaccaagtttcttcacaatcttatagtcactgaatc 11628563

                     
Query: 219      ctgct 223
                |||||
Sbjct: 11628564 ctgct 11628568



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 65/77 (84%)
 Strand = Plus / Plus

                                                                            
Query: 149      caatcttatggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatag 208
                |||||||| |||||||||||||  |  ||||||||||| ||  |||| ||||||||||||
Sbjct: 11569808 caatcttagggatagacctcgaaaactcctcgagctccaagcatcttcacaatcttatag 11569867

                                 
Query: 209      tcgctaaatcctgcttt 225
                ||  | |||||||||||
Sbjct: 11569868 tcattgaatcctgcttt 11569884



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 60/71 (84%)
 Strand = Plus / Plus

                                                                            
Query: 155      tatggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtcgcta 214
                ||||| |||||||| | ||  |||||||||||||||||||| ||||| || ||||| || 
Sbjct: 11433075 tatgggtagacctcaaagacgcctcgagctcccagtttcttcacaatattgtagtcactg 11433134

                           
Query: 215      aatcctgcttt 225
                || ||||||||
Sbjct: 11433135 aagcctgcttt 11433145



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 59/70 (84%)
 Strand = Plus / Plus

                                                                           
Query: 150     aatcttatggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagt 209
               ||||| |||||||||||||||  | | |||||||||| || |||||| | ||||||||||
Sbjct: 7203492 aatctcatggatagacctcgaacacagctcgagctccgagcttcttggcgatcttatagt 7203551

                         
Query: 210     cgctaaatcc 219
               | || |||||
Sbjct: 7203552 cactgaatcc 7203561



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 56/65 (86%), Gaps = 1/65 (1%)
 Strand = Plus / Plus

                                                                            
Query: 159      gatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtcgctaaatc 218
                |||||||||| |  ||| ||||||||||||||| ||| |||||||||||||| || || |
Sbjct: 11431193 gatagacctcaaatatagctcgagctcccagtt-cttcacaatcttatagtcactgaagc 11431251

                     
Query: 219      ctgct 223
                |||||
Sbjct: 11431252 ctgct 11431256



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 44/51 (86%)
 Strand = Plus / Plus

                                                                   
Query: 249      tttcatctcgttgccgtccttttgtacataccaacatgagcatatccatca 299
                |||||||||| ||||| ||| |||||   |||||||| |||||||||||||
Sbjct: 11569908 tttcatctcgctgccggcctcttgtattgaccaacatcagcatatccatca 11569958



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                     
Query: 158      ggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtc 210
                ||||||||||| |||| ||  |||| ||||| |||||| |||||||| |||||
Sbjct: 11373720 ggatagacctcaatgacacaccgaggtcccaatttcttcacaatcttgtagtc 11373772



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                                    
Query: 158      ggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagt 209
                ||||||||||| | || | ||||||||| || ||| || |||||||||||||
Sbjct: 11408787 ggatagacctcaaagacagctcgagctctcaattttttcacaatcttatagt 11408838



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>gb|AC135793.4| Oryza sativa chromosome 11 BAC clone OSJNBb0017P15, complete sequence
          Length = 128418

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 65/77 (84%)
 Strand = Plus / Minus

                                                                        
Query: 149  caatcttatggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatag 208
            |||||||| |||||||||||||  |  ||||||||||| ||  |||| ||||||||||||
Sbjct: 8918 caatcttagggatagacctcgaaaactcctcgagctccaagcatcttcacaatcttatag 8859

                             
Query: 209  tcgctaaatcctgcttt 225
            ||  | |||||||||||
Sbjct: 8858 tcattgaatcctgcttt 8842



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 44/51 (86%)
 Strand = Plus / Minus

                                                               
Query: 249  tttcatctcgttgccgtccttttgtacataccaacatgagcatatccatca 299
            |||||||||| ||||| ||| |||||   |||||||| |||||||||||||
Sbjct: 8818 tttcatctcgctgccggcctcttgtattgaccaacatcagcatatccatca 8768



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>dbj|AK106179.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-C11, full
            insert sequence
          Length = 1362

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 65/77 (84%)
 Strand = Plus / Minus

                                                                        
Query: 149  caatcttatggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatag 208
            |||||||| |||||||||||||  |  ||||||||||| ||  |||| ||||||||||||
Sbjct: 1162 caatcttagggatagacctcgaaaactcctcgagctccaagcatcttcacaatcttatag 1103

                             
Query: 209  tcgctaaatcctgcttt 225
            ||  | |||||||||||
Sbjct: 1102 tcattgaatcctgcttt 1086



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 44/51 (86%)
 Strand = Plus / Minus

                                                               
Query: 249  tttcatctcgttgccgtccttttgtacataccaacatgagcatatccatca 299
            |||||||||| ||||| ||| |||||   |||||||| |||||||||||||
Sbjct: 1062 tttcatctcgctgccggcctcttgtattgaccaacatcagcatatccatca 1012



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>dbj|AK061247.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-E05, full
           insert sequence
          Length = 1262

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 56/65 (86%)
 Strand = Plus / Minus

                                                                       
Query: 419 caatcttcgtcactccagaagtgcagaacaagcttaagcatgagaacttgagcaggtgga 478
           ||||| ||||||||||||  ||| || |||||||| ||||||| | ||||||||||||| 
Sbjct: 906 caatcctcgtcactccagtggtgaagcacaagcttgagcatgacagcttgagcaggtggg 847

                
Query: 479 atggc 483
           |||||
Sbjct: 846 atggc 842



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                                
Query: 158  ggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagt 209
            ||||||||||| | || | ||||||||| || ||| || |||||||||||||
Sbjct: 1167 ggatagacctcaaagacagctcgagctctcaattttttcacaatcttatagt 1116



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>dbj|AK059770.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-H05, full
            insert sequence
          Length = 1264

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 65/77 (84%)
 Strand = Plus / Minus

                                                                        
Query: 149  caatcttatggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatag 208
            |||||||| |||||||||||||  |  ||||||||||| ||  |||| ||||||||||||
Sbjct: 1167 caatcttagggatagacctcgaaaactcctcgagctccaagcatcttcacaatcttatag 1108

                             
Query: 209  tcgctaaatcctgcttt 225
            ||  | |||||||||||
Sbjct: 1107 tcattgaatcctgcttt 1091



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 44/51 (86%)
 Strand = Plus / Minus

                                                               
Query: 249  tttcatctcgttgccgtccttttgtacataccaacatgagcatatccatca 299
            |||||||||| ||||| ||| |||||   |||||||| |||||||||||||
Sbjct: 1067 tttcatctcgctgccggcctcttgtattgaccaacatcagcatatccatca 1017



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>gb|AY107519.1| Zea mays PCO078033 mRNA sequence
          Length = 1299

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 49/56 (87%)
 Strand = Plus / Minus

                                                                    
Query: 156  atggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtcg 211
            |||| ||||||||||||| ||| |||||||| | ||||||||||| ||| ||||||
Sbjct: 1107 atgggtagacctcgatgacaccacgagctccgattttcttgacaaccttgtagtcg 1052



 Score = 48.1 bits (24), Expect = 0.027
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                   
Query: 406 caggatattgatgcaatcttcgtcactccagaagtgcagaacaagcttaagcatga 461
           |||||| |||| ||| || ||||| |||||||||||||| || ||||| |||||||
Sbjct: 854 caggatcttgacgcagtcgtcgtcgctccagaagtgcaggacgagcttgagcatga 799



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>gb|AC112208.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0015P05
              map C53961S, complete sequence
          Length = 175121

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 60/71 (84%)
 Strand = Plus / Plus

                                                                          
Query: 155    tatggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtcgcta 214
              ||||| |||||||| | ||  |||||||||||||||||||| ||||| || ||||| || 
Sbjct: 140244 tatgggtagacctcaaagacgcctcgagctcccagtttcttcacaatattgtagtcactg 140303

                         
Query: 215    aatcctgcttt 225
              || ||||||||
Sbjct: 140304 aagcctgcttt 140314



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 56/65 (86%), Gaps = 1/65 (1%)
 Strand = Plus / Plus

                                                                          
Query: 159    gatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtcgctaaatc 218
              |||||||||| |  ||| ||||||||||||||| ||| |||||||||||||| || || |
Sbjct: 138362 gatagacctcaaatatagctcgagctcccagtt-cttcacaatcttatagtcactgaagc 138420

                   
Query: 219    ctgct 223
              |||||
Sbjct: 138421 ctgct 138425



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                  
Query: 158   ggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtc 210
             ||||||||||| |||| ||  |||| ||||| |||||| |||||||| |||||
Sbjct: 80889 ggatagacctcaatgacacaccgaggtcccaatttcttcacaatcttgtagtc 80941



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                                  
Query: 158    ggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagt 209
              ||||||||||| | || | ||||||||| || ||| || |||||||||||||
Sbjct: 115956 ggatagacctcaaagacagctcgagctctcaattttttcacaatcttatagt 116007



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>gb|AC135258.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0097K08 map C827S, complete sequence
          Length = 137870

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 59/70 (84%)
 Strand = Plus / Minus

                                                                         
Query: 150   aatcttatggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagt 209
             ||||| |||||||||||||||  | | |||||||||| || |||||| | ||||||||||
Sbjct: 45034 aatctcatggatagacctcgaacacagctcgagctccgagcttcttggcgatcttatagt 44975

                       
Query: 210   cgctaaatcc 219
             | || |||||
Sbjct: 44974 cactgaatcc 44965



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>gb|AC147811.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0026P08 map near C827S, complete sequence
          Length = 148676

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 59/70 (84%)
 Strand = Plus / Plus

                                                                         
Query: 150   aatcttatggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagt 209
             ||||| |||||||||||||||  | | |||||||||| || |||||| | ||||||||||
Sbjct: 50741 aatctcatggatagacctcgaacacagctcgagctccgagcttcttggcgatcttatagt 50800

                       
Query: 210   cgctaaatcc 219
             | || |||||
Sbjct: 50801 cactgaatcc 50810



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>gb|AC137843.15| Mus musculus chromosome 9, clone RP23-413J12, complete sequence
          Length = 197907

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 51    ttacaaacttggtcattgccc 71
             |||||||||||||||||||||
Sbjct: 98423 ttacaaacttggtcattgccc 98403



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>dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005
          Length = 4429080

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 133     cgaggcacttggcacacaatc 153
               |||||||||||||||||||||
Sbjct: 2961124 cgaggcacttggcacacaatc 2961104



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>ref|XM_506587.1| PREDICTED Oryza sativa (japonica cultivar-group), P0597G07.108
           patrial mRNA
          Length = 1493

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 181 agctcccagtttcttgacaa 200
           ||||||||||||||||||||
Sbjct: 441 agctcccagtttcttgacaa 460



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>gb|AC024777.1| Caenorhabditis elegans cosmid Y42H9AR, complete sequence
          Length = 15915

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 304  ttcggtttctaatatttctt 323
            ||||||||||||||||||||
Sbjct: 3670 ttcggtttctaatatttctt 3689



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>gb|AC121981.3| Mus musculus BAC clone RP24-290K9 from 5, complete sequence
          Length = 184908

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 404   gacaggatattgatgcaatc 423
             ||||||||||||||||||||
Sbjct: 89926 gacaggatattgatgcaatc 89907



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>emb|X69947.1|PHPMADS2 P.hybrida mRNA for pmads 2
          Length = 971

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 453 taagcatgagaacttgagca 472
           ||||||||||||||||||||
Sbjct: 290 taagcatgagaacttgagca 309



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>emb|X71417.1|PHFBP3 P.hybrida fbp3 mRNA
          Length = 904

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 453 taagcatgagaacttgagca 472
           ||||||||||||||||||||
Sbjct: 291 taagcatgagaacttgagca 310



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 181      agctcccagtttcttgacaa 200
                ||||||||||||||||||||
Sbjct: 29313283 agctcccagtttcttgacaa 29313302



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>dbj|AP004316.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0597G07
          Length = 152928

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 181    agctcccagtttcttgacaa 200
              ||||||||||||||||||||
Sbjct: 101972 agctcccagtttcttgacaa 101991



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>dbj|AK108661.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-148-F02, full
           insert sequence
          Length = 1493

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 181 agctcccagtttcttgacaa 200
           ||||||||||||||||||||
Sbjct: 441 agctcccagtttcttgacaa 460



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>gb|AC007544.4| Homo sapiens 12 BAC RP11-12D15 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 119034

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 317   atttctttggatgatgagcc 336
             ||||||||||||||||||||
Sbjct: 43678 atttctttggatgatgagcc 43659



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>gb|AY103669.1| Zea mays PCO073521 mRNA sequence
          Length = 1503

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 238  gctccagtcattttcatctcgttgccgtccttttgt 273
            |||||| || ||||||||||  ||||||||||||||
Sbjct: 1040 gctccattctttttcatctctctgccgtccttttgt 1005



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>gb|AF033496.1|AF033496 Zea mays herbicide safener binding protein (SBP1) mRNA, complete cds
          Length = 1438

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 238  gctccagtcattttcatctcgttgccgtccttttgt 273
            |||||| || ||||||||||  ||||||||||||||
Sbjct: 1038 gctccattctttttcatctctctgccgtccttttgt 1003



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>emb|AL840639.3| Mouse DNA sequence from clone RP23-156E17 on chromosome 2, complete
             sequence
          Length = 192074

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 352   aacaataacctttccccccatttc 375
             |||||||||||||||| |||||||
Sbjct: 17596 aacaataacctttcccaccatttc 17619


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,006,878
Number of Sequences: 3902068
Number of extensions: 4006878
Number of successful extensions: 75595
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 75305
Number of HSP's gapped (non-prelim): 287
length of query: 485
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 463
effective length of database: 17,147,199,772
effective search space: 7939153494436
effective search space used: 7939153494436
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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