Clone Name | rbasd22m18 |
---|---|
Clone Library Name | barley_pub |
>gb|BT009571.1| Triticum aestivum clone wre1n.pk0021.e3:fis, full insert mRNA sequence Length = 770 Score = 167 bits (84), Expect = 4e-38 Identities = 141/160 (88%) Strand = Plus / Minus Query: 153 cttatggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtcgc 212 ||||||||||||||||||||| ||||||| || |||||||||||||||||||||| || Sbjct: 513 cttatggatagacctcgatgacacctcgatggccaagtttcttgacaatcttatagttgc 454 Query: 213 taaatcctgcttttgtaaagattgtgctccagtcattttcatctcgttgccgtccttttg 272 |||| |||||||| |||||||| |||||||| || |||||||| |||||||||||| | | Sbjct: 453 taaaccctgctttcgtaaagatcgtgctccactccttttcatcccgttgccgtcctctgg 394 Query: 273 tacataccaacatgagcatatccatcaacagttcggtttc 312 |||||| ||||| ||||| ||||||| |||||||||||| Sbjct: 393 tacatatgaacatcagcatgtccatcagcagttcggtttc 354 Score = 111 bits (56), Expect = 2e-21 Identities = 89/100 (89%) Strand = Plus / Minus Query: 362 tttccccccatttcgcgggacggaatggccttcttgcattgagacaggatattgatgcaa 421 ||||| |||||||| ||||| || ||||||||||||||||||| ||||| ||||||||| Sbjct: 304 tttcctcccatttctcgggaaggtatggccttcttgcattgagcgaggatcttgatgcaa 245 Query: 422 tcttcgtcactccagaagtgcagaacaagcttaagcatga 461 || ||||| ||||||||||| ||||||||||| ||||||| Sbjct: 244 tcctcgtcgctccagaagtgtagaacaagcttgagcatga 205
>gb|AY177404.1| Secale cereale O-methyltransferase mRNA, complete cds Length = 1373 Score = 73.8 bits (37), Expect = 5e-10 Identities = 58/65 (89%) Strand = Plus / Minus Query: 161 tagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtcgctaaatcct 220 ||||||||||| | |||||| || ||||||||||||||||| || ||||||||||| ||| Sbjct: 1132 tagacctcgataacacctcgtgcacccagtttcttgacaattttgtagtcgctaaaccct 1073 Query: 221 gcttt 225 ||||| Sbjct: 1072 gcttt 1068
>gb|AC138195.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0005P21, complete sequence Length = 147381 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/65 (87%) Strand = Plus / Minus Query: 159 gatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtcgctaaatc 218 |||||||||||| || | ||||||| || |||||||| |||||||||||||| || |||| Sbjct: 64473 gatagacctcgaagacagctcgagcaccaagtttcttcacaatcttatagtcactgaatc 64414 Query: 219 ctgct 223 ||||| Sbjct: 64413 ctgct 64409 Score = 58.0 bits (29), Expect = 3e-05 Identities = 65/77 (84%) Strand = Plus / Minus Query: 149 caatcttatggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatag 208 |||||||| ||||||||||||| | ||||||||||| || |||| |||||||||||| Sbjct: 123169 caatcttagggatagacctcgaaaactcctcgagctccaagcatcttcacaatcttatag 123110 Query: 209 tcgctaaatcctgcttt 225 || | ||||||||||| Sbjct: 123109 tcattgaatcctgcttt 123093 Score = 46.1 bits (23), Expect = 0.11 Identities = 44/51 (86%) Strand = Plus / Minus Query: 249 tttcatctcgttgccgtccttttgtacataccaacatgagcatatccatca 299 |||||||||| ||||| ||| ||||| |||||||| ||||||||||||| Sbjct: 123069 tttcatctcgctgccggcctcttgtattgaccaacatcagcatatccatca 123019
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/65 (87%) Strand = Plus / Plus Query: 159 gatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtcgctaaatc 218 |||||||||||| || | ||||||| || |||||||| |||||||||||||| || |||| Sbjct: 11549315 gatagacctcgaagacagctcgagcaccaagtttcttcacaatcttatagtcactgaatc 11549374 Query: 219 ctgct 223 ||||| Sbjct: 11549375 ctgct 11549379 Score = 58.0 bits (29), Expect = 3e-05 Identities = 65/77 (84%) Strand = Plus / Plus Query: 149 caatcttatggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatag 208 |||||||| ||||||||||||| | ||||||||||| || |||| |||||||||||| Sbjct: 11490619 caatcttagggatagacctcgaaaactcctcgagctccaagcatcttcacaatcttatag 11490678 Query: 209 tcgctaaatcctgcttt 225 || | ||||||||||| Sbjct: 11490679 tcattgaatcctgcttt 11490695 Score = 54.0 bits (27), Expect = 4e-04 Identities = 60/71 (84%) Strand = Plus / Plus Query: 155 tatggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtcgcta 214 ||||| |||||||| | || |||||||||||||||||||| ||||| || ||||| || Sbjct: 11353886 tatgggtagacctcaaagacgcctcgagctcccagtttcttcacaatattgtagtcactg 11353945 Query: 215 aatcctgcttt 225 || |||||||| Sbjct: 11353946 aagcctgcttt 11353956 Score = 52.0 bits (26), Expect = 0.002 Identities = 59/70 (84%) Strand = Plus / Plus Query: 150 aatcttatggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagt 209 ||||| ||||||||||||||| | | |||||||||| || |||||| | |||||||||| Sbjct: 7137521 aatctcatggatagacctcgaacacagctcgagctccgagcttcttggcgatcttatagt 7137580 Query: 210 cgctaaatcc 219 | || ||||| Sbjct: 7137581 cactgaatcc 7137590 Score = 50.1 bits (25), Expect = 0.007 Identities = 56/65 (86%), Gaps = 1/65 (1%) Strand = Plus / Plus Query: 159 gatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtcgctaaatc 218 |||||||||| | ||| ||||||||||||||| ||| |||||||||||||| || || | Sbjct: 11352004 gatagacctcaaatatagctcgagctcccagtt-cttcacaatcttatagtcactgaagc 11352062 Query: 219 ctgct 223 ||||| Sbjct: 11352063 ctgct 11352067 Score = 46.1 bits (23), Expect = 0.11 Identities = 44/51 (86%) Strand = Plus / Plus Query: 249 tttcatctcgttgccgtccttttgtacataccaacatgagcatatccatca 299 |||||||||| ||||| ||| ||||| |||||||| ||||||||||||| Sbjct: 11490719 tttcatctcgctgccggcctcttgtattgaccaacatcagcatatccatca 11490769 Score = 42.1 bits (21), Expect = 1.7 Identities = 45/53 (84%) Strand = Plus / Plus Query: 158 ggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtc 210 ||||||||||| |||| || |||| ||||| |||||| |||||||| ||||| Sbjct: 11294531 ggatagacctcaatgacacaccgaggtcccaatttcttcacaatcttgtagtc 11294583 Score = 40.1 bits (20), Expect = 6.6 Identities = 44/52 (84%) Strand = Plus / Plus Query: 158 ggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagt 209 ||||||||||| | || | ||||||||| || ||| || ||||||||||||| Sbjct: 11329598 ggatagacctcaaagacagctcgagctctcaattttttcacaatcttatagt 11329649
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/65 (87%) Strand = Plus / Plus Query: 159 gatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtcgctaaatc 218 |||||||||||| || | ||||||| || |||||||| |||||||||||||| || |||| Sbjct: 11628504 gatagacctcgaagacagctcgagcaccaagtttcttcacaatcttatagtcactgaatc 11628563 Query: 219 ctgct 223 ||||| Sbjct: 11628564 ctgct 11628568 Score = 58.0 bits (29), Expect = 3e-05 Identities = 65/77 (84%) Strand = Plus / Plus Query: 149 caatcttatggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatag 208 |||||||| ||||||||||||| | ||||||||||| || |||| |||||||||||| Sbjct: 11569808 caatcttagggatagacctcgaaaactcctcgagctccaagcatcttcacaatcttatag 11569867 Query: 209 tcgctaaatcctgcttt 225 || | ||||||||||| Sbjct: 11569868 tcattgaatcctgcttt 11569884 Score = 54.0 bits (27), Expect = 4e-04 Identities = 60/71 (84%) Strand = Plus / Plus Query: 155 tatggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtcgcta 214 ||||| |||||||| | || |||||||||||||||||||| ||||| || ||||| || Sbjct: 11433075 tatgggtagacctcaaagacgcctcgagctcccagtttcttcacaatattgtagtcactg 11433134 Query: 215 aatcctgcttt 225 || |||||||| Sbjct: 11433135 aagcctgcttt 11433145 Score = 52.0 bits (26), Expect = 0.002 Identities = 59/70 (84%) Strand = Plus / Plus Query: 150 aatcttatggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagt 209 ||||| ||||||||||||||| | | |||||||||| || |||||| | |||||||||| Sbjct: 7203492 aatctcatggatagacctcgaacacagctcgagctccgagcttcttggcgatcttatagt 7203551 Query: 210 cgctaaatcc 219 | || ||||| Sbjct: 7203552 cactgaatcc 7203561 Score = 50.1 bits (25), Expect = 0.007 Identities = 56/65 (86%), Gaps = 1/65 (1%) Strand = Plus / Plus Query: 159 gatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtcgctaaatc 218 |||||||||| | ||| ||||||||||||||| ||| |||||||||||||| || || | Sbjct: 11431193 gatagacctcaaatatagctcgagctcccagtt-cttcacaatcttatagtcactgaagc 11431251 Query: 219 ctgct 223 ||||| Sbjct: 11431252 ctgct 11431256 Score = 46.1 bits (23), Expect = 0.11 Identities = 44/51 (86%) Strand = Plus / Plus Query: 249 tttcatctcgttgccgtccttttgtacataccaacatgagcatatccatca 299 |||||||||| ||||| ||| ||||| |||||||| ||||||||||||| Sbjct: 11569908 tttcatctcgctgccggcctcttgtattgaccaacatcagcatatccatca 11569958 Score = 42.1 bits (21), Expect = 1.7 Identities = 45/53 (84%) Strand = Plus / Plus Query: 158 ggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtc 210 ||||||||||| |||| || |||| ||||| |||||| |||||||| ||||| Sbjct: 11373720 ggatagacctcaatgacacaccgaggtcccaatttcttcacaatcttgtagtc 11373772 Score = 40.1 bits (20), Expect = 6.6 Identities = 44/52 (84%) Strand = Plus / Plus Query: 158 ggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagt 209 ||||||||||| | || | ||||||||| || ||| || ||||||||||||| Sbjct: 11408787 ggatagacctcaaagacagctcgagctctcaattttttcacaatcttatagt 11408838
>gb|AC135793.4| Oryza sativa chromosome 11 BAC clone OSJNBb0017P15, complete sequence Length = 128418 Score = 58.0 bits (29), Expect = 3e-05 Identities = 65/77 (84%) Strand = Plus / Minus Query: 149 caatcttatggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatag 208 |||||||| ||||||||||||| | ||||||||||| || |||| |||||||||||| Sbjct: 8918 caatcttagggatagacctcgaaaactcctcgagctccaagcatcttcacaatcttatag 8859 Query: 209 tcgctaaatcctgcttt 225 || | ||||||||||| Sbjct: 8858 tcattgaatcctgcttt 8842 Score = 46.1 bits (23), Expect = 0.11 Identities = 44/51 (86%) Strand = Plus / Minus Query: 249 tttcatctcgttgccgtccttttgtacataccaacatgagcatatccatca 299 |||||||||| ||||| ||| ||||| |||||||| ||||||||||||| Sbjct: 8818 tttcatctcgctgccggcctcttgtattgaccaacatcagcatatccatca 8768
>dbj|AK106179.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-C11, full insert sequence Length = 1362 Score = 58.0 bits (29), Expect = 3e-05 Identities = 65/77 (84%) Strand = Plus / Minus Query: 149 caatcttatggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatag 208 |||||||| ||||||||||||| | ||||||||||| || |||| |||||||||||| Sbjct: 1162 caatcttagggatagacctcgaaaactcctcgagctccaagcatcttcacaatcttatag 1103 Query: 209 tcgctaaatcctgcttt 225 || | ||||||||||| Sbjct: 1102 tcattgaatcctgcttt 1086 Score = 46.1 bits (23), Expect = 0.11 Identities = 44/51 (86%) Strand = Plus / Minus Query: 249 tttcatctcgttgccgtccttttgtacataccaacatgagcatatccatca 299 |||||||||| ||||| ||| ||||| |||||||| ||||||||||||| Sbjct: 1062 tttcatctcgctgccggcctcttgtattgaccaacatcagcatatccatca 1012
>dbj|AK061247.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-E05, full insert sequence Length = 1262 Score = 58.0 bits (29), Expect = 3e-05 Identities = 56/65 (86%) Strand = Plus / Minus Query: 419 caatcttcgtcactccagaagtgcagaacaagcttaagcatgagaacttgagcaggtgga 478 ||||| |||||||||||| ||| || |||||||| ||||||| | ||||||||||||| Sbjct: 906 caatcctcgtcactccagtggtgaagcacaagcttgagcatgacagcttgagcaggtggg 847 Query: 479 atggc 483 ||||| Sbjct: 846 atggc 842 Score = 40.1 bits (20), Expect = 6.6 Identities = 44/52 (84%) Strand = Plus / Minus Query: 158 ggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagt 209 ||||||||||| | || | ||||||||| || ||| || ||||||||||||| Sbjct: 1167 ggatagacctcaaagacagctcgagctctcaattttttcacaatcttatagt 1116
>dbj|AK059770.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-H05, full insert sequence Length = 1264 Score = 58.0 bits (29), Expect = 3e-05 Identities = 65/77 (84%) Strand = Plus / Minus Query: 149 caatcttatggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatag 208 |||||||| ||||||||||||| | ||||||||||| || |||| |||||||||||| Sbjct: 1167 caatcttagggatagacctcgaaaactcctcgagctccaagcatcttcacaatcttatag 1108 Query: 209 tcgctaaatcctgcttt 225 || | ||||||||||| Sbjct: 1107 tcattgaatcctgcttt 1091 Score = 46.1 bits (23), Expect = 0.11 Identities = 44/51 (86%) Strand = Plus / Minus Query: 249 tttcatctcgttgccgtccttttgtacataccaacatgagcatatccatca 299 |||||||||| ||||| ||| ||||| |||||||| ||||||||||||| Sbjct: 1067 tttcatctcgctgccggcctcttgtattgaccaacatcagcatatccatca 1017
>gb|AY107519.1| Zea mays PCO078033 mRNA sequence Length = 1299 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 156 atggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtcg 211 |||| ||||||||||||| ||| |||||||| | ||||||||||| ||| |||||| Sbjct: 1107 atgggtagacctcgatgacaccacgagctccgattttcttgacaaccttgtagtcg 1052 Score = 48.1 bits (24), Expect = 0.027 Identities = 48/56 (85%) Strand = Plus / Minus Query: 406 caggatattgatgcaatcttcgtcactccagaagtgcagaacaagcttaagcatga 461 |||||| |||| ||| || ||||| |||||||||||||| || ||||| ||||||| Sbjct: 854 caggatcttgacgcagtcgtcgtcgctccagaagtgcaggacgagcttgagcatga 799
>gb|AC112208.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0015P05 map C53961S, complete sequence Length = 175121 Score = 54.0 bits (27), Expect = 4e-04 Identities = 60/71 (84%) Strand = Plus / Plus Query: 155 tatggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtcgcta 214 ||||| |||||||| | || |||||||||||||||||||| ||||| || ||||| || Sbjct: 140244 tatgggtagacctcaaagacgcctcgagctcccagtttcttcacaatattgtagtcactg 140303 Query: 215 aatcctgcttt 225 || |||||||| Sbjct: 140304 aagcctgcttt 140314 Score = 50.1 bits (25), Expect = 0.007 Identities = 56/65 (86%), Gaps = 1/65 (1%) Strand = Plus / Plus Query: 159 gatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtcgctaaatc 218 |||||||||| | ||| ||||||||||||||| ||| |||||||||||||| || || | Sbjct: 138362 gatagacctcaaatatagctcgagctcccagtt-cttcacaatcttatagtcactgaagc 138420 Query: 219 ctgct 223 ||||| Sbjct: 138421 ctgct 138425 Score = 42.1 bits (21), Expect = 1.7 Identities = 45/53 (84%) Strand = Plus / Plus Query: 158 ggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagtc 210 ||||||||||| |||| || |||| ||||| |||||| |||||||| ||||| Sbjct: 80889 ggatagacctcaatgacacaccgaggtcccaatttcttcacaatcttgtagtc 80941 Score = 40.1 bits (20), Expect = 6.6 Identities = 44/52 (84%) Strand = Plus / Plus Query: 158 ggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagt 209 ||||||||||| | || | ||||||||| || ||| || ||||||||||||| Sbjct: 115956 ggatagacctcaaagacagctcgagctctcaattttttcacaatcttatagt 116007
>gb|AC135258.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0097K08 map C827S, complete sequence Length = 137870 Score = 52.0 bits (26), Expect = 0.002 Identities = 59/70 (84%) Strand = Plus / Minus Query: 150 aatcttatggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagt 209 ||||| ||||||||||||||| | | |||||||||| || |||||| | |||||||||| Sbjct: 45034 aatctcatggatagacctcgaacacagctcgagctccgagcttcttggcgatcttatagt 44975 Query: 210 cgctaaatcc 219 | || ||||| Sbjct: 44974 cactgaatcc 44965
>gb|AC147811.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0026P08 map near C827S, complete sequence Length = 148676 Score = 52.0 bits (26), Expect = 0.002 Identities = 59/70 (84%) Strand = Plus / Plus Query: 150 aatcttatggatagacctcgatgatacctcgagctcccagtttcttgacaatcttatagt 209 ||||| ||||||||||||||| | | |||||||||| || |||||| | |||||||||| Sbjct: 50741 aatctcatggatagacctcgaacacagctcgagctccgagcttcttggcgatcttatagt 50800 Query: 210 cgctaaatcc 219 | || ||||| Sbjct: 50801 cactgaatcc 50810
>gb|AC137843.15| Mus musculus chromosome 9, clone RP23-413J12, complete sequence Length = 197907 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 51 ttacaaacttggtcattgccc 71 ||||||||||||||||||||| Sbjct: 98423 ttacaaacttggtcattgccc 98403
>dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005 Length = 4429080 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 133 cgaggcacttggcacacaatc 153 ||||||||||||||||||||| Sbjct: 2961124 cgaggcacttggcacacaatc 2961104
>ref|XM_506587.1| PREDICTED Oryza sativa (japonica cultivar-group), P0597G07.108 patrial mRNA Length = 1493 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 agctcccagtttcttgacaa 200 |||||||||||||||||||| Sbjct: 441 agctcccagtttcttgacaa 460
>gb|AC024777.1| Caenorhabditis elegans cosmid Y42H9AR, complete sequence Length = 15915 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 304 ttcggtttctaatatttctt 323 |||||||||||||||||||| Sbjct: 3670 ttcggtttctaatatttctt 3689
>gb|AC121981.3| Mus musculus BAC clone RP24-290K9 from 5, complete sequence Length = 184908 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 404 gacaggatattgatgcaatc 423 |||||||||||||||||||| Sbjct: 89926 gacaggatattgatgcaatc 89907
>emb|X69947.1|PHPMADS2 P.hybrida mRNA for pmads 2 Length = 971 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 453 taagcatgagaacttgagca 472 |||||||||||||||||||| Sbjct: 290 taagcatgagaacttgagca 309
>emb|X71417.1|PHFBP3 P.hybrida fbp3 mRNA Length = 904 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 453 taagcatgagaacttgagca 472 |||||||||||||||||||| Sbjct: 291 taagcatgagaacttgagca 310
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 agctcccagtttcttgacaa 200 |||||||||||||||||||| Sbjct: 29313283 agctcccagtttcttgacaa 29313302
>dbj|AP004316.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0597G07 Length = 152928 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 agctcccagtttcttgacaa 200 |||||||||||||||||||| Sbjct: 101972 agctcccagtttcttgacaa 101991
>dbj|AK108661.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-148-F02, full insert sequence Length = 1493 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 agctcccagtttcttgacaa 200 |||||||||||||||||||| Sbjct: 441 agctcccagtttcttgacaa 460
>gb|AC007544.4| Homo sapiens 12 BAC RP11-12D15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 119034 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 317 atttctttggatgatgagcc 336 |||||||||||||||||||| Sbjct: 43678 atttctttggatgatgagcc 43659
>gb|AY103669.1| Zea mays PCO073521 mRNA sequence Length = 1503 Score = 40.1 bits (20), Expect = 6.6 Identities = 32/36 (88%) Strand = Plus / Minus Query: 238 gctccagtcattttcatctcgttgccgtccttttgt 273 |||||| || |||||||||| |||||||||||||| Sbjct: 1040 gctccattctttttcatctctctgccgtccttttgt 1005
>gb|AF033496.1|AF033496 Zea mays herbicide safener binding protein (SBP1) mRNA, complete cds Length = 1438 Score = 40.1 bits (20), Expect = 6.6 Identities = 32/36 (88%) Strand = Plus / Minus Query: 238 gctccagtcattttcatctcgttgccgtccttttgt 273 |||||| || |||||||||| |||||||||||||| Sbjct: 1038 gctccattctttttcatctctctgccgtccttttgt 1003
>emb|AL840639.3| Mouse DNA sequence from clone RP23-156E17 on chromosome 2, complete sequence Length = 192074 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 352 aacaataacctttccccccatttc 375 |||||||||||||||| ||||||| Sbjct: 17596 aacaataacctttcccaccatttc 17619 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,006,878 Number of Sequences: 3902068 Number of extensions: 4006878 Number of successful extensions: 75595 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 29 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 75305 Number of HSP's gapped (non-prelim): 287 length of query: 485 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 463 effective length of database: 17,147,199,772 effective search space: 7939153494436 effective search space used: 7939153494436 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)