>JAD1D_PANTR (Q5XUN4) Jumonji/ARID domain-containing protein 1D (SmcY protein)|
          Length = 1535

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -3

Query: 240  KPKPGVRGSLKKTG*SKPPPLTPSTVRSALVVACIC 133
            K K G+   L++T  +KP PL PS + S+    C+C
Sbjct: 1143 KEKEGIL-QLRRTNSAKPSPLAPSLMASSPTSICVC 1177

>JAD1D_HUMAN (Q9BY66) Jumonji/ARID domain-containing protein 1D (SmcY protein)|
            (Histocompatibility Y antigen) (H-Y)
          Length = 1539

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -3

Query: 240  KPKPGVRGSLKKTG*SKPPPLTPSTVRSALVVACIC 133
            K K G+   L++T  +KP PL PS + S+    C+C
Sbjct: 1143 KEKEGIL-QLRRTNSAKPSPLAPSLMASSPTSICVC 1177

>MMPL9_MYCTU (P95235) Putative membrane protein mmpL9|
          Length = 962

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 195 SKPPPLTPSTVRSALVVACICCLKFTIY 112
           S P P+ P T+R A +   +C L FT++
Sbjct: 13  SGPHPIIPRTIRLAAIPILLCWLGFTVF 40

>JAD1C_HUMAN (P41229) Jumonji/ARID domain-containing protein 1C (SmcX protein)|
            (Xe169 protein)
          Length = 1560

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 240  KPKPGVRGSLKKTG*SKPPPLTPSTVRSALVVACIC 133
            K K G+   L++T  +KP PL  S+  S+    C+C
Sbjct: 1156 KEKEGIL-QLRRTNSAKPSPLASSSTASSTTSICVC 1190


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,968,067
Number of Sequences: 219361
Number of extensions: 248891
Number of successful extensions: 712
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 80,573,946
effective HSP length: 60
effective length of database: 67,412,286
effective search space used: 1617894864
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)