Clone Name | rbasd22m17 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 89.7 bits (45), Expect = 4e-15 Identities = 45/45 (100%) Strand = Plus / Minus Query: 205 cttcttgaggctgccgcggacgccgggcttgggcttggaggagga 249 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 29461424 cttcttgaggctgccgcggacgccgggcttgggcttggaggagga 29461380
>dbj|AP003621.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0621D05 Length = 180250 Score = 89.7 bits (45), Expect = 4e-15 Identities = 45/45 (100%) Strand = Plus / Minus Query: 205 cttcttgaggctgccgcggacgccgggcttgggcttggaggagga 249 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 172305 cttcttgaggctgccgcggacgccgggcttgggcttggaggagga 172261
>dbj|AP003634.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0655A07 Length = 172473 Score = 89.7 bits (45), Expect = 4e-15 Identities = 45/45 (100%) Strand = Plus / Minus Query: 205 cttcttgaggctgccgcggacgccgggcttgggcttggaggagga 249 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 25930 cttcttgaggctgccgcggacgccgggcttgggcttggaggagga 25886
>dbj|AK100915.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133D21, full insert sequence Length = 773 Score = 89.7 bits (45), Expect = 4e-15 Identities = 45/45 (100%) Strand = Plus / Minus Query: 205 cttcttgaggctgccgcggacgccgggcttgggcttggaggagga 249 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 451 cttcttgaggctgccgcggacgccgggcttgggcttggaggagga 407
>gb|AY105672.1| Zea mays PCO122536 mRNA sequence Length = 842 Score = 81.8 bits (41), Expect = 1e-12 Identities = 41/41 (100%) Strand = Plus / Minus Query: 205 cttcttgaggctgccgcggacgccgggcttgggcttggagg 245 ||||||||||||||||||||||||||||||||||||||||| Sbjct: 432 cttcttgaggctgccgcggacgccgggcttgggcttggagg 392
>gb|BT016375.1| Zea mays clone Contig208 mRNA sequence Length = 815 Score = 73.8 bits (37), Expect = 2e-10 Identities = 37/37 (100%) Strand = Plus / Minus Query: 209 ttgaggctgccgcggacgccgggcttgggcttggagg 245 ||||||||||||||||||||||||||||||||||||| Sbjct: 417 ttgaggctgccgcggacgccgggcttgggcttggagg 381
>gb|BT017513.1| Zea mays clone EL01N0419A08.c mRNA sequence Length = 817 Score = 73.8 bits (37), Expect = 2e-10 Identities = 40/41 (97%) Strand = Plus / Minus Query: 205 cttcttgaggctgccgcggacgccgggcttgggcttggagg 245 |||||| |||||||||||||||||||||||||||||||||| Sbjct: 410 cttcttaaggctgccgcggacgccgggcttgggcttggagg 370
>gb|AY106117.1| Zea mays PCO122535 mRNA sequence Length = 764 Score = 73.8 bits (37), Expect = 2e-10 Identities = 40/41 (97%) Strand = Plus / Minus Query: 205 cttcttgaggctgccgcggacgccgggcttgggcttggagg 245 ||||||||||||||||||||| ||||||||||||||||||| Sbjct: 403 cttcttgaggctgccgcggaccccgggcttgggcttggagg 363
>emb|AJ389885.1|AFR389885 Artemia franciscana partial mRNA for Na,K-ATPase alpha-1 subunit, clone c130 Length = 2990 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 ggagggggtttagattaccc 201 |||||||||||||||||||| Sbjct: 2846 ggagggggtttagattaccc 2827 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,589,530 Number of Sequences: 3902068 Number of extensions: 1589530 Number of successful extensions: 45311 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 45293 Number of HSP's gapped (non-prelim): 18 length of query: 254 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 232 effective length of database: 17,147,199,772 effective search space: 3978150347104 effective search space used: 3978150347104 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)