>YIAN_ECOLI (P37675) 2,3-diketo-L-gulonate TRAP transporter large permease|
           protein yiaN
          Length = 425

 Score = 30.4 bits (67), Expect = 3.2
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = +3

Query: 150 LINCGVYIFTP---NILNAIEDVLKQKKDRGIMFIYITFFLPFKLHVVY 287
           +INC + + TP   N+LN I  V K K D  +  ++    + + L VV+
Sbjct: 362 IINCSIGLITPPIGNVLNVISGVAKLKFDDAVRGVFPYVLVLYSLLVVF 410

>RPOB_PSINU (Q8WI24) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase beta subunit) (RNA
           polymerase beta subunit)
          Length = 1066

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
 Frame = -2

Query: 257 KSNINEHNTSIFLLFQDILDCIKY-IGSKYIDSAIYEITHLHMHKMH*S*ANY*EA--LL 87
           K N+N      FLL QD+L  I Y IG KY    + +I HL   ++  S AN+ +    L
Sbjct: 268 KLNLNVPENESFLLPQDLLAAIDYLIGIKYGIGTLDDIDHLKNRRVR-SVANFLQGQLRL 326

Query: 86  MPK*FENQLRQ 54
                EN +RQ
Sbjct: 327 ALTHLENSIRQ 337

>YM04_PARTE (P15605) Hypothetical 18.8 kDa protein (ORF4)|
          Length = 156

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 231 GIMFIYITFFLPFKLHVVYTLFFTLPLIFA*FCF 332
           G  F++  FF  F ++  Y LFF +P+    F F
Sbjct: 91  GFFFLFFVFFTSFFVYFSYLLFFFVPVFVLFFFF 124


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,608,265
Number of Sequences: 219361
Number of extensions: 1198314
Number of successful extensions: 2238
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2238
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4085413911
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)