ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd23b11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK099561.1| Oryza sativa (japonica cultivar-group) cDNA clon... 341 2e-90
2ref|NM_190643.1| Oryza sativa (japonica cultivar-group), predic... 305 1e-79
3gb|AY112109.1| Zea mays CL26172_1 mRNA sequence 272 2e-69
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 204 3e-49
5dbj|AP003279.2| Oryza sativa (japonica cultivar-group) genomic D... 204 3e-49
6dbj|AK101805.1| Oryza sativa (japonica cultivar-group) cDNA clon... 204 3e-49
7dbj|AK105423.1| Oryza sativa (japonica cultivar-group) cDNA clon... 159 2e-35
8emb|CR318644.8| Zebrafish DNA sequence from clone DKEYP-11H3 in ... 46 0.17
9gb|AC162890.4| Mus musculus chromosome 3, clone RP23-362E13, com... 44 0.66
10gb|AC125349.3| Mus musculus BAC clone RP23-394P9 from chromosome... 44 0.66
11gb|AE017226.1| Treponema denticola ATCC 35405, complete genome 44 0.66
12dbj|AP007284.1| Lotus japonicus genomic DNA, chromosome 6, clone... 44 0.66
13gb|AC099062.2| Homo sapiens chromosome 1 clone RP5-1043L3, compl... 42 2.6
14emb|AL020993.1|HS5O6 Human DNA sequence from clone RP1-5O6 on ch... 42 2.6
15gb|AC091956.3| Homo sapiens chromosome 5 clone RP11-430F16, comp... 42 2.6
16dbj|AB159656.1| Thorea riekei chloroplast rbcL gene for ribulose... 42 2.6
17gb|AC092361.3| Homo sapiens chromosome 5 clone RP11-356O21, comp... 42 2.6
18gb|AC139497.3| Homo sapiens chromosome 5 clone RP11-855C21, comp... 42 2.6
19gb|AC138828.2| Homo sapiens chromosome 5 clone RP11-1156J4, comp... 42 2.6
20gb|AC138854.2| Homo sapiens chromosome 5 clone RP11-1330D14, com... 42 2.6
21ref|XM_226468.3| PREDICTED: Rattus norvegicus hydrocephalus-indu... 42 2.6

>dbj|AK099561.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013034J20, full
           insert sequence
          Length = 1002

 Score =  341 bits (172), Expect = 2e-90
 Identities = 301/344 (87%)
 Strand = Plus / Minus

                                                                       
Query: 385 accttgccaaggcttttgaagaacatgccttcgtttttctcctcttcgatccagtcttcg 444
           ||||| |||||||||||||||||||| ||||| ||||||||||  || ||||| ||||||
Sbjct: 595 accttcccaaggcttttgaagaacataccttcatttttctccttctcaatccaatcttcg 536

                                                                       
Query: 445 aagtcttctaacactctctcattcatttctatctcctgcctttgcatttcagctgtctcc 504
           |||||||| | ||| ||||| ||||||||||||||||||||||| | |||||| ||||||
Sbjct: 535 aagtcttcaagcaccctctcgttcatttctatctcctgcctttgaacttcagcagtctcc 476

                                                                       
Query: 505 tcgtaggactgcatcttgctgtcgagacgctccattatctggtccccaatttgatcgagc 564
           ||  ||| ||||||||||||||| || | |||||||||||||||||||| || ||| |||
Sbjct: 475 tcaaaggcctgcatcttgctgtccagcctctccattatctggtccccaacttcatcaagc 416

                                                                       
Query: 565 tctttcatggcgttctgcccaatcatgtcgaactcggtgtcggcgtccttggtgaacttg 624
           ||||||||||||||||| |||||||  |||||||||||||| || ||||| |  ||||||
Sbjct: 415 tctttcatggcgttctggccaatcagatcgaactcggtgtccgcatccttcgcaaacttg 356

                                                                       
Query: 625 gtcaggtaagcagaccgctcgtccaggaagtttgtgatccggaccttctgcgtctgaagc 684
           |||||||||||||| |||||||||| |||| ||||||| || |||||||||| |||||||
Sbjct: 355 gtcaggtaagcagagcgctcgtccaagaagcttgtgatgcgcaccttctgcgcctgaagc 296

                                                       
Query: 685 atggcgatttttgcaagcacctcctgctggcgttggtcaccgcc 728
           || ||||| || ||||| |||||||||||||||| ||| |||||
Sbjct: 295 attgcgatcttcgcaaggacctcctgctggcgtttgtctccgcc 252



 Score =  204 bits (103), Expect = 3e-49
 Identities = 178/203 (87%)
 Strand = Plus / Minus

                                                                       
Query: 136 atatcttgctcataggtgacctgagcaaccaggccaatgaaaattagacccagagcagca 195
           ||||| ||||| ||| |||||||||||||||  |||||||| |||||||||||||| |||
Sbjct: 847 atatcctgctcgtagatgacctgagcaaccaaaccaatgaatattagacccagagctgca 788

                                                                       
Query: 196 accttcctccattccacctctggtgttgcaaagacggcatttgcgattgtaagaccgagt 255
           ||||||||||| |||||||| |||||||| |||||||||||||| |||||||| ||||||
Sbjct: 787 accttcctccactccacctcaggtgttgcgaagacggcatttgcaattgtaagcccgagt 728

                                                                       
Query: 256 atcgccatgagtgcaaggtaaatattcatccgagtttttgaccccgcactctcctctgca 315
           || ||||||||  |||||||||| ||||||| ||||||||| || ||||| || | ||||
Sbjct: 727 attgccatgagcccaaggtaaatgttcatcctagtttttgatcctgcactttcttttgca 668

                                  
Query: 316 atctctctgaccttctgtgcttc 338
           || ||| ||||||| ||||||||
Sbjct: 667 atatctttgaccttttgtgcttc 645



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>ref|NM_190643.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 597

 Score =  305 bits (154), Expect = 1e-79
 Identities = 265/302 (87%)
 Strand = Plus / Minus

                                                                       
Query: 385 accttgccaaggcttttgaagaacatgccttcgtttttctcctcttcgatccagtcttcg 444
           ||||| |||||||||||||||||||| ||||| ||||||||||  || ||||| ||||||
Sbjct: 302 accttcccaaggcttttgaagaacataccttcatttttctccttctcaatccaatcttcg 243

                                                                       
Query: 445 aagtcttctaacactctctcattcatttctatctcctgcctttgcatttcagctgtctcc 504
           |||||||| | ||| ||||| ||||||||||||||||||||||| | |||||| ||||||
Sbjct: 242 aagtcttcaagcaccctctcgttcatttctatctcctgcctttgaacttcagcagtctcc 183

                                                                       
Query: 505 tcgtaggactgcatcttgctgtcgagacgctccattatctggtccccaatttgatcgagc 564
           ||  ||| ||||||||||||||| || | |||||||||||||||||||| || ||| |||
Sbjct: 182 tcaaaggcctgcatcttgctgtccagcctctccattatctggtccccaacttcatcaagc 123

                                                                       
Query: 565 tctttcatggcgttctgcccaatcatgtcgaactcggtgtcggcgtccttggtgaacttg 624
           ||||||||||||||||| |||||||  |||||||||||||| || ||||| |  ||||||
Sbjct: 122 tctttcatggcgttctggccaatcagatcgaactcggtgtccgcatccttcgcaaacttg 63

                                                                       
Query: 625 gtcaggtaagcagaccgctcgtccaggaagtttgtgatccggaccttctgcgtctgaagc 684
           |||||||||||||| |||||||||| |||| ||||||| || |||||||||| |||||||
Sbjct: 62  gtcaggtaagcagagcgctcgtccaagaagcttgtgatgcgcaccttctgcgcctgaagc 3

             
Query: 685 at 686
           ||
Sbjct: 2   at 1



 Score =  204 bits (103), Expect = 3e-49
 Identities = 178/203 (87%)
 Strand = Plus / Minus

                                                                       
Query: 136 atatcttgctcataggtgacctgagcaaccaggccaatgaaaattagacccagagcagca 195
           ||||| ||||| ||| |||||||||||||||  |||||||| |||||||||||||| |||
Sbjct: 554 atatcctgctcgtagatgacctgagcaaccaaaccaatgaatattagacccagagctgca 495

                                                                       
Query: 196 accttcctccattccacctctggtgttgcaaagacggcatttgcgattgtaagaccgagt 255
           ||||||||||| |||||||| |||||||| |||||||||||||| |||||||| ||||||
Sbjct: 494 accttcctccactccacctcaggtgttgcgaagacggcatttgcaattgtaagcccgagt 435

                                                                       
Query: 256 atcgccatgagtgcaaggtaaatattcatccgagtttttgaccccgcactctcctctgca 315
           || ||||||||  |||||||||| ||||||| ||||||||| || ||||| || | ||||
Sbjct: 434 attgccatgagcccaaggtaaatgttcatcctagtttttgatcctgcactttcttttgca 375

                                  
Query: 316 atctctctgaccttctgtgcttc 338
           || ||| ||||||| ||||||||
Sbjct: 374 atatctttgaccttttgtgcttc 352



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>gb|AY112109.1| Zea mays CL26172_1 mRNA sequence
          Length = 768

 Score =  272 bits (137), Expect = 2e-69
 Identities = 245/281 (87%)
 Strand = Plus / Plus

                                                                       
Query: 434 tccagtcttcgaagtcttctaacactctctcattcatttctatctcctgcctttgcattt 493
           |||||||||||||||| ||||||||  | || |||||||||||||| |||| ||| |  |
Sbjct: 289 tccagtcttcgaagtcctctaacaccttatcgttcatttctatctcttgccgttgtacct 348

                                                                       
Query: 494 cagctgtctcctcgtaggactgcatcttgctgtcgagacgctccattatctggtccccaa 553
           |||| ||||||||| |||  ||||||||||||||||| | ||||| ||||||||| ||||
Sbjct: 349 cagccgtctcctcgaaggcttgcatcttgctgtcgagcctctccagtatctggtcaccaa 408

                                                                       
Query: 554 tttgatcgagctctttcatggcgttctgcccaatcatgtcgaactcggtgtcggcgtcct 613
               ||| || ||||||||||||||||||||||||| ||||||||| | |||||||||||
Sbjct: 409 cggcatcaagttctttcatggcgttctgcccaatcaggtcgaactccgagtcggcgtcct 468

                                                                       
Query: 614 tggtgaacttggtcaggtaagcagaccgctcgtccaggaagtttgtgatccggaccttct 673
           ||| ||||||||||||||||||||| |||||||||| ||||| |||||| || |||||||
Sbjct: 469 tggcgaacttggtcaggtaagcagagcgctcgtccaagaagtctgtgatgcgcaccttct 528

                                                    
Query: 674 gcgtctgaagcatggcgatttttgcaagcacctcctgctgg 714
           ||||||||||||||||||| | |||||| ||||||||||||
Sbjct: 529 gcgtctgaagcatggcgatctgtgcaagaacctcctgctgg 569



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 107/129 (82%)
 Strand = Plus / Plus

                                                                       
Query: 219 tgttgcaaagacggcatttgcgattgtaagaccgagtatcgccatgagtgcaaggtaaat 278
           ||||||||||| |||||| || |||||||  ||||||||| |||| ||  | ||||||||
Sbjct: 77  tgttgcaaagatggcattcgcaattgtaatcccgagtatccccatcagccccaggtaaat 136

                                                                       
Query: 279 attcatccgagtttttgaccccgcactctcctctgcaatctctctgaccttctgtgcttc 338
            ||||| ||||     || || ||||||||||||||||||||| ||||||||||||||||
Sbjct: 137 gttcatacgagnnnnngatcctgcactctcctctgcaatctctttgaccttctgtgcttc 196

                    
Query: 339 gatcttggc 347
            | ||||||
Sbjct: 197 caccttggc 205



 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 49/53 (92%)
 Strand = Plus / Plus

                                                                
Query: 143 gctcataggtgacctgagcaaccaggccaatgaaaattagacccagagcagca 195
           |||| ||| |||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 1   gctcgtagatgacctgagcaaccagaccaatgaaaatcagacccagagcagca 53



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 381 tttgaccttgccaaggcttttgaagaac 408
           ||||||||||||||||||||||||||||
Sbjct: 236 tttgaccttgccaaggcttttgaagaac 263



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  204 bits (103), Expect = 3e-49
 Identities = 178/203 (87%)
 Strand = Plus / Plus

                                                                            
Query: 136      atatcttgctcataggtgacctgagcaaccaggccaatgaaaattagacccagagcagca 195
                ||||| ||||| ||| |||||||||||||||  |||||||| |||||||||||||| |||
Sbjct: 36729541 atatcctgctcgtagatgacctgagcaaccaaaccaatgaatattagacccagagctgca 36729600

                                                                            
Query: 196      accttcctccattccacctctggtgttgcaaagacggcatttgcgattgtaagaccgagt 255
                ||||||||||| |||||||| |||||||| |||||||||||||| |||||||| ||||||
Sbjct: 36729601 accttcctccactccacctcaggtgttgcgaagacggcatttgcaattgtaagcccgagt 36729660

                                                                            
Query: 256      atcgccatgagtgcaaggtaaatattcatccgagtttttgaccccgcactctcctctgca 315
                || ||||||||  |||||||||| ||||||| ||||||||| || ||||| || | ||||
Sbjct: 36729661 attgccatgagcccaaggtaaatgttcatcctagtttttgatcctgcactttcttttgca 36729720

                                       
Query: 316      atctctctgaccttctgtgcttc 338
                || ||| ||||||| ||||||||
Sbjct: 36729721 atatctttgaccttttgtgcttc 36729743



 Score =  186 bits (94), Expect = 7e-44
 Identities = 163/186 (87%)
 Strand = Plus / Plus

                                                                            
Query: 543      ctggtccccaatttgatcgagctctttcatggcgttctgcccaatcatgtcgaactcggt 602
                ||||||||||| || ||| |||||||||||||||||||| |||||||  |||||||||||
Sbjct: 36730024 ctggtccccaacttcatcaagctctttcatggcgttctggccaatcagatcgaactcggt 36730083

                                                                            
Query: 603      gtcggcgtccttggtgaacttggtcaggtaagcagaccgctcgtccaggaagtttgtgat 662
                ||| || ||||| |  |||||||||||||||||||| |||||||||| |||| |||||||
Sbjct: 36730084 gtccgcatccttcgcaaacttggtcaggtaagcagagcgctcgtccaagaagcttgtgat 36730143

                                                                            
Query: 663      ccggaccttctgcgtctgaagcatggcgatttttgcaagcacctcctgctggcgttggtc 722
                 || |||||||||| ||||||||| ||||| || ||||| |||||||||||||||| |||
Sbjct: 36730144 gcgcaccttctgcgcctgaagcattgcgatcttcgcaaggacctcctgctggcgtttgtc 36730203

                      
Query: 723      accgcc 728
                 |||||
Sbjct: 36730204 tccgcc 36730209



 Score =  159 bits (80), Expect = 2e-35
 Identities = 140/160 (87%)
 Strand = Plus / Plus

                                                                            
Query: 385      accttgccaaggcttttgaagaacatgccttcgtttttctcctcttcgatccagtcttcg 444
                ||||| |||||||||||||||||||| ||||| ||||||||||  || ||||| ||||||
Sbjct: 36729793 accttcccaaggcttttgaagaacataccttcatttttctccttctcaatccaatcttcg 36729852

                                                                            
Query: 445      aagtcttctaacactctctcattcatttctatctcctgcctttgcatttcagctgtctcc 504
                |||||||| | ||| ||||| ||||||||||||||||||||||| | |||||| ||||||
Sbjct: 36729853 aagtcttcaagcaccctctcgttcatttctatctcctgcctttgaacttcagcagtctcc 36729912

                                                        
Query: 505      tcgtaggactgcatcttgctgtcgagacgctccattatct 544
                ||  ||| ||||||||||||||| || | |||||||||||
Sbjct: 36729913 tcaaaggcctgcatcttgctgtccagcctctccattatct 36729952



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>dbj|AP003279.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0529E05
          Length = 134982

 Score =  204 bits (103), Expect = 3e-49
 Identities = 178/203 (87%)
 Strand = Plus / Plus

                                                                         
Query: 136   atatcttgctcataggtgacctgagcaaccaggccaatgaaaattagacccagagcagca 195
             ||||| ||||| ||| |||||||||||||||  |||||||| |||||||||||||| |||
Sbjct: 55856 atatcctgctcgtagatgacctgagcaaccaaaccaatgaatattagacccagagctgca 55915

                                                                         
Query: 196   accttcctccattccacctctggtgttgcaaagacggcatttgcgattgtaagaccgagt 255
             ||||||||||| |||||||| |||||||| |||||||||||||| |||||||| ||||||
Sbjct: 55916 accttcctccactccacctcaggtgttgcgaagacggcatttgcaattgtaagcccgagt 55975

                                                                         
Query: 256   atcgccatgagtgcaaggtaaatattcatccgagtttttgaccccgcactctcctctgca 315
             || ||||||||  |||||||||| ||||||| ||||||||| || ||||| || | ||||
Sbjct: 55976 attgccatgagcccaaggtaaatgttcatcctagtttttgatcctgcactttcttttgca 56035

                                    
Query: 316   atctctctgaccttctgtgcttc 338
             || ||| ||||||| ||||||||
Sbjct: 56036 atatctttgaccttttgtgcttc 56058



 Score =  186 bits (94), Expect = 7e-44
 Identities = 163/186 (87%)
 Strand = Plus / Plus

                                                                         
Query: 543   ctggtccccaatttgatcgagctctttcatggcgttctgcccaatcatgtcgaactcggt 602
             ||||||||||| || ||| |||||||||||||||||||| |||||||  |||||||||||
Sbjct: 56339 ctggtccccaacttcatcaagctctttcatggcgttctggccaatcagatcgaactcggt 56398

                                                                         
Query: 603   gtcggcgtccttggtgaacttggtcaggtaagcagaccgctcgtccaggaagtttgtgat 662
             ||| || ||||| |  |||||||||||||||||||| |||||||||| |||| |||||||
Sbjct: 56399 gtccgcatccttcgcaaacttggtcaggtaagcagagcgctcgtccaagaagcttgtgat 56458

                                                                         
Query: 663   ccggaccttctgcgtctgaagcatggcgatttttgcaagcacctcctgctggcgttggtc 722
              || |||||||||| ||||||||| ||||| || ||||| |||||||||||||||| |||
Sbjct: 56459 gcgcaccttctgcgcctgaagcattgcgatcttcgcaaggacctcctgctggcgtttgtc 56518

                   
Query: 723   accgcc 728
              |||||
Sbjct: 56519 tccgcc 56524



 Score =  159 bits (80), Expect = 2e-35
 Identities = 140/160 (87%)
 Strand = Plus / Plus

                                                                         
Query: 385   accttgccaaggcttttgaagaacatgccttcgtttttctcctcttcgatccagtcttcg 444
             ||||| |||||||||||||||||||| ||||| ||||||||||  || ||||| ||||||
Sbjct: 56108 accttcccaaggcttttgaagaacataccttcatttttctccttctcaatccaatcttcg 56167

                                                                         
Query: 445   aagtcttctaacactctctcattcatttctatctcctgcctttgcatttcagctgtctcc 504
             |||||||| | ||| ||||| ||||||||||||||||||||||| | |||||| ||||||
Sbjct: 56168 aagtcttcaagcaccctctcgttcatttctatctcctgcctttgaacttcagcagtctcc 56227

                                                     
Query: 505   tcgtaggactgcatcttgctgtcgagacgctccattatct 544
             ||  ||| ||||||||||||||| || | |||||||||||
Sbjct: 56228 tcaaaggcctgcatcttgctgtccagcctctccattatct 56267



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>dbj|AK101805.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033066K09, full
            insert sequence
          Length = 3051

 Score =  204 bits (103), Expect = 3e-49
 Identities = 178/203 (87%)
 Strand = Plus / Plus

                                                                        
Query: 136  atatcttgctcataggtgacctgagcaaccaggccaatgaaaattagacccagagcagca 195
            ||||| ||||| ||| |||||||||||||||  |||||||| |||||||||||||| |||
Sbjct: 2050 atatcctgctcgtagatgacctgagcaaccaaaccaatgaatattagacccagagctgca 2109

                                                                        
Query: 196  accttcctccattccacctctggtgttgcaaagacggcatttgcgattgtaagaccgagt 255
            ||||||||||| |||||||| |||||||| |||||||||||||| |||||||| ||||||
Sbjct: 2110 accttcctccactccacctcaggtgttgcgaagacggcatttgcaattgtaagcccgagt 2169

                                                                        
Query: 256  atcgccatgagtgcaaggtaaatattcatccgagtttttgaccccgcactctcctctgca 315
            || ||||||||  |||||||||| ||||||| ||||||||| || ||||| || | ||||
Sbjct: 2170 attgccatgagcccaaggtaaatgttcatcctagtttttgatcctgcactttcttttgca 2229

                                   
Query: 316  atctctctgaccttctgtgcttc 338
            || ||| ||||||| ||||||||
Sbjct: 2230 atatctttgaccttttgtgcttc 2252



 Score =  159 bits (80), Expect = 2e-35
 Identities = 140/160 (87%)
 Strand = Plus / Plus

                                                                        
Query: 385  accttgccaaggcttttgaagaacatgccttcgtttttctcctcttcgatccagtcttcg 444
            ||||| |||||||||||||||||||| ||||| ||||||||||  || ||||| ||||||
Sbjct: 2302 accttcccaaggcttttgaagaacataccttcatttttctccttctcaatccaatcttcg 2361

                                                                        
Query: 445  aagtcttctaacactctctcattcatttctatctcctgcctttgcatttcagctgtctcc 504
            |||||||| | ||| ||||| ||||||||||||||||||||||| | |||||| ||||||
Sbjct: 2362 aagtcttcaagcaccctctcgttcatttctatctcctgcctttgaacttcagcagtctcc 2421

                                                    
Query: 505  tcgtaggactgcatcttgctgtcgagacgctccattatct 544
            ||  ||| ||||||||||||||| || | |||||||||||
Sbjct: 2422 tcaaaggcctgcatcttgctgtccagcctctccattatct 2461



 Score =  137 bits (69), Expect = 6e-29
 Identities = 120/137 (87%)
 Strand = Plus / Plus

                                                                        
Query: 592  tcgaactcggtgtcggcgtccttggtgaacttggtcaggtaagcagaccgctcgtccagg 651
            |||||||||||||| || ||||| |  |||||||||||||||||||| |||||||||| |
Sbjct: 2473 tcgaactcggtgtccgcatccttcgcaaacttggtcaggtaagcagagcgctcgtccaag 2532

                                                                        
Query: 652  aagtttgtgatccggaccttctgcgtctgaagcatggcgatttttgcaagcacctcctgc 711
            ||| ||||||| || |||||||||| ||||||||| ||||| || ||||| |||||||||
Sbjct: 2533 aagcttgtgatgcgcaccttctgcgcctgaagcattgcgatcttcgcaaggacctcctgc 2592

                             
Query: 712  tggcgttggtcaccgcc 728
            ||||||| ||| |||||
Sbjct: 2593 tggcgtttgtctccgcc 2609



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>dbj|AK105423.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-124-C01, full
            insert sequence
          Length = 3098

 Score =  159 bits (80), Expect = 2e-35
 Identities = 140/160 (87%)
 Strand = Plus / Plus

                                                                        
Query: 385  accttgccaaggcttttgaagaacatgccttcgtttttctcctcttcgatccagtcttcg 444
            ||||| |||||||||||||||||||| ||||| ||||||||||  || ||||| ||||||
Sbjct: 2323 accttcccaaggcttttgaagaacataccttcatttttctccttctcaatccaatcttcg 2382

                                                                        
Query: 445  aagtcttctaacactctctcattcatttctatctcctgcctttgcatttcagctgtctcc 504
            |||||||| | ||| ||||| ||||||||||||||||||||||| | |||||| ||||||
Sbjct: 2383 aagtcttcaagcaccctctcgttcatttctatctcctgcctttgaacttcagcagtctcc 2442

                                                    
Query: 505  tcgtaggactgcatcttgctgtcgagacgctccattatct 544
            ||  ||| ||||||||||||||| || | |||||||||||
Sbjct: 2443 tcaaaggcctgcatcttgctgtccagcctctccattatct 2482



 Score =  157 bits (79), Expect = 6e-35
 Identities = 118/131 (90%)
 Strand = Plus / Plus

                                                                        
Query: 136  atatcttgctcataggtgacctgagcaaccaggccaatgaaaattagacccagagcagca 195
            ||||| ||||| ||| |||||||||||||||  |||||||| |||||||||||||| |||
Sbjct: 2181 atatcctgctcgtagatgacctgagcaaccaaaccaatgaatattagacccagagctgca 2240

                                                                        
Query: 196  accttcctccattccacctctggtgttgcaaagacggcatttgcgattgtaagaccgagt 255
            ||||||||||| |||||||| |||||||| |||||||||||||| |||||||| ||||||
Sbjct: 2241 accttcctccactccacctcaggtgttgcgaagacggcatttgcaattgtaagcccgagt 2300

                       
Query: 256  atcgccatgag 266
            || ||||||||
Sbjct: 2301 attgccatgag 2311



 Score =  137 bits (69), Expect = 6e-29
 Identities = 120/137 (87%)
 Strand = Plus / Plus

                                                                        
Query: 592  tcgaactcggtgtcggcgtccttggtgaacttggtcaggtaagcagaccgctcgtccagg 651
            |||||||||||||| || ||||| |  |||||||||||||||||||| |||||||||| |
Sbjct: 2509 tcgaactcggtgtccgcatccttcgcaaacttggtcaggtaagcagagcgctcgtccaag 2568

                                                                        
Query: 652  aagtttgtgatccggaccttctgcgtctgaagcatggcgatttttgcaagcacctcctgc 711
            ||| ||||||| || |||||||||| ||||||||| ||||| || ||||| |||||||||
Sbjct: 2569 aagcttgtgatgcgcaccttctgcgcctgaagcattgcgatcttcgcaaggacctcctgc 2628

                             
Query: 712  tggcgttggtcaccgcc 728
            ||||||| ||| |||||
Sbjct: 2629 tggcgtttgtctccgcc 2645



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>emb|CR318644.8| Zebrafish DNA sequence from clone DKEYP-11H3 in linkage group 23,
             complete sequence
          Length = 92984

 Score = 46.1 bits (23), Expect = 0.17
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 316   atctctctgaccttctgtgcttc 338
             |||||||||||||||||||||||
Sbjct: 26234 atctctctgaccttctgtgcttc 26256



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>gb|AC162890.4| Mus musculus chromosome 3, clone RP23-362E13, complete sequence
          Length = 113095

 Score = 44.1 bits (22), Expect = 0.66
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 609   gtccttggtgaacttggtcagg 630
             ||||||||||||||||||||||
Sbjct: 38396 gtccttggtgaacttggtcagg 38417



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>gb|AC125349.3| Mus musculus BAC clone RP23-394P9 from chromosome 3, complete sequence
          Length = 194060

 Score = 44.1 bits (22), Expect = 0.66
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 609   gtccttggtgaacttggtcagg 630
             ||||||||||||||||||||||
Sbjct: 41365 gtccttggtgaacttggtcagg 41344



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>gb|AE017226.1| Treponema denticola ATCC 35405, complete genome
          Length = 2843201

 Score = 44.1 bits (22), Expect = 0.66
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 361     tcctcattgttttgaggttttt 382
               ||||||||||||||||||||||
Sbjct: 1907299 tcctcattgttttgaggttttt 1907320



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>dbj|AP007284.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT23F02, TM0183,
             complete sequence
          Length = 70173

 Score = 44.1 bits (22), Expect = 0.66
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 692   tttttgcaagcacctcctgctg 713
             ||||||||||||||||||||||
Sbjct: 15888 tttttgcaagcacctcctgctg 15867



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>gb|AC099062.2| Homo sapiens chromosome 1 clone RP5-1043L3, complete sequence
          Length = 101840

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 89    tctttcattcatctctttttt 109
             |||||||||||||||||||||
Sbjct: 57048 tctttcattcatctctttttt 57068



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>emb|AL020993.1|HS5O6 Human DNA sequence from clone RP1-5O6 on chromosome 22q12, complete
             sequence
          Length = 106008

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 304   ctctcctctgcaatctctctg 324
             |||||||||||||||||||||
Sbjct: 34488 ctctcctctgcaatctctctg 34508



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>gb|AC091956.3| Homo sapiens chromosome 5 clone RP11-430F16, complete sequence
          Length = 209754

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 163  accaggccaatgaaaattaga 183
            |||||||||||||||||||||
Sbjct: 3784 accaggccaatgaaaattaga 3764



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>dbj|AB159656.1| Thorea riekei chloroplast rbcL gene for ribulose-1,5-bisphosphate
           carboxylase/oxygenase large subunit, complete cds
          Length = 1467

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 85  cagctctttcattcatctctt 105
           |||||||||||||||||||||
Sbjct: 775 cagctctttcattcatctctt 755



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>gb|AC092361.3| Homo sapiens chromosome 5 clone RP11-356O21, complete sequence
          Length = 166133

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 163    accaggccaatgaaaattaga 183
              |||||||||||||||||||||
Sbjct: 137390 accaggccaatgaaaattaga 137370



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>gb|AC139497.3| Homo sapiens chromosome 5 clone RP11-855C21, complete sequence
          Length = 199004

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 163    accaggccaatgaaaattaga 183
              |||||||||||||||||||||
Sbjct: 195214 accaggccaatgaaaattaga 195234



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>gb|AC138828.2| Homo sapiens chromosome 5 clone RP11-1156J4, complete sequence
          Length = 184142

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 163    accaggccaatgaaaattaga 183
              |||||||||||||||||||||
Sbjct: 181629 accaggccaatgaaaattaga 181609



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>gb|AC138854.2| Homo sapiens chromosome 5 clone RP11-1330D14, complete sequence
          Length = 203368

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 163    accaggccaatgaaaattaga 183
              |||||||||||||||||||||
Sbjct: 172715 accaggccaatgaaaattaga 172695



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>ref|XM_226468.3| PREDICTED: Rattus norvegicus hydrocephalus-inducing protein
             (LOC292017), mRNA
          Length = 17592

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 304   ctctcctctgcaatctctctgacct 328
             |||||||||||||||||| ||||||
Sbjct: 12701 ctctcctctgcaatctctatgacct 12677


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,952,646
Number of Sequences: 3902068
Number of extensions: 6952646
Number of successful extensions: 153444
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 153330
Number of HSP's gapped (non-prelim): 112
length of query: 750
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 727
effective length of database: 17,143,297,704
effective search space: 12463177430808
effective search space used: 12463177430808
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)
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