Clone Information

BLAST Search Result

Clone Name	rbasd23b09
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	SYP51_ARATH (Q9SA23) Syntaxin-51 (AtSYP51)	150	3e-36
2	SYP52_ARATH (Q94KK7) Syntaxin-52 (AtSYP52)	148	1e-35
3	SYP61_ARATH (Q946Y7) Syntaxin-61 (AtSYP61) (Osmotic stress-sensi...	56	7e-08
4	VAM7_YEAST (P32912) Vacuolar morphogenesis protein VAM7	49	1e-05
5	TLG1_SCHPO (Q9HGN3) t-SNARE affecting a late Golgi compartment p...	46	9e-05
6	STX8_RAT (Q9Z2Q7) Syntaxin-8	45	2e-04
7	STX8_MOUSE (O88983) Syntaxin-8 (Syntaxin-like protein 3I35)	45	2e-04
8	STX5_CAEEL (P83528) Putative syntaxin C15C7.1	44	4e-04
9	FSV1_SCHPO (O14222) Syntaxin-like protein fsv1	44	4e-04
10	STX8_HUMAN (Q9UNK0) Syntaxin-8	44	4e-04
11	STX6_CHICK (Q5ZL19) Syntaxin-6	40	0.004
12	STX10_HUMAN (O60499) Syntaxin-10 (Syn10)	39	0.009
13	SYP72_ARATH (Q94KK6) Syntaxin-72 (AtSYP72)	39	0.011
14	STX6_RAT (Q63635) Syntaxin-6	39	0.015
15	STX6_MOUSE (Q9JKK1) Syntaxin-6	39	0.015
16	SNP30_ARATH (Q9LMG8) Putative SNAP25 homologous protein SNAP30 (...	37	0.043
17	SYP71_ARATH (Q9SF29) Syntaxin-71 (AtSYP71)	36	0.073
18	BET12_ARATH (Q94CG2) Bet1-like SNARE 1-2 (AtBET12) (Bet1/Sft1-li...	36	0.073
19	SYP22_ARATH (P93654) Syntaxin-22 (AtSYP22) (AtVAM3)	36	0.096
20	TLG1_YEAST (Q03322) T-SNARE affecting a late Golgi compartment p...	35	0.13
21	SNP33_ARATH (Q9S7P9) SNAP25 homologous protein SNAP33 (AtSNAP33)...	35	0.16
22	DPO4_CLOPE (Q8XK37) DNA polymerase IV (EC 2.7.7.7) (Pol IV)	35	0.21
23	SYP21_ARATH (Q39233) Syntaxin-21 (AtSYP21) (PEP12 homolog) (AtPE...	34	0.36
24	SEC9_CANGA (Q6FY22) Protein transport protein SEC9	33	0.48
25	BET11_ARATH (Q9M2J9) Bet1-like SNARE 1-1 (AtBET11) (Bet1/Sft1-li...	33	0.62
26	SNP29_ARATH (Q9SD96) SNAP25 homologous protein SNAP29 (AtSNAP29)...	32	1.1
27	RB6I2_HUMAN (Q8IUD2) RAB6-interacting protein 2 (ERC protein 1)	32	1.4
28	PAWR_RAT (Q62627) PRKC apoptosis WT1 regulator protein (Prostate...	32	1.4
29	CCD39_MOUSE (Q9D5Y1) Coiled-coil domain-containing protein 39	32	1.8
30	CING_HUMAN (Q9P2M7) Cingulin	32	1.8
31	APSB_EMENI (O60039) Anucleate primary sterigmata protein B	31	2.4
32	PAWR_MOUSE (Q925B0) PRKC apoptosis WT1 regulator protein (Prosta...	31	2.4
33	PAWR_HUMAN (Q96IZ0) PRKC apoptosis WT1 regulator protein (Prosta...	31	2.4
34	TPM_TRISP (Q95VA8) Tropomyosin	31	3.1
35	TPM_TRIPS (Q8WR63) Tropomyosin	31	3.1
36	RB6I2_MOUSE (Q99MI1) RAB6-interacting protein 2 (ERC protein 1) ...	31	3.1
37	RB6I2_RAT (Q811U3) RAB6-interacting protein 2 (ERC protein 1) (E...	31	3.1
38	YPBR_BACSU (P54159) Hypothetical protein ypbR	30	4.0
39	HR38_DROME (P49869) Probable nuclear hormone receptor HR38 (dHR38)	30	5.3
40	GRAU_DROME (Q9U405) Transcription factor grauzone	30	5.3
41	NOP14_YEAST (Q99207) Nucleolar complex protein 14 (U3 small nucl...	30	5.3
42	MFP1_TOBAC (Q9M7J4) MAR binding filament-like protein 1-1	30	6.9
43	UPP_THET2 (Q72J35) Uracil phosphoribosyltransferase (EC 2.4.2.9)...	30	6.9
44	NR4A1_MOUSE (P12813) Orphan nuclear receptor NR4A1 (Orphan nucle...	29	9.0
45	NR4A1_RAT (P22829) Orphan nuclear receptor NR4A1 (Orphan nuclear...	29	9.0
46	KCNN4_HUMAN (O15554) Intermediate conductance calcium-activated ...	29	9.0
47	NR4A2_XENLA (Q04913) Orphan nuclear receptor NR4A2 (Orphan nucle...	29	9.0
48	HOOK1_HUMAN (Q9UJC3) Hook homolog 1 (h-hook1) (hHK1)	29	9.0

>SYP51_ARATH (Q9SA23) Syntaxin-51 (AtSYP51)|
          Length = 232

 Score =  150 bits (378), Expect = 3e-36
 Identities = 75/104 (72%), Positives = 87/104 (83%)
 Frame = -2

Query: 595 GQSKKAADDMSRVAGLDNQGIVGLQRQVMREQDEGLERLEETVLSTKHIALAVNEELTLH 416
           G   K  D MSRV G+DNQGIVG QRQVMREQDEGLE+LE TV+STKHIALAV+EEL L 
Sbjct: 111 GPDIKPDDSMSRVTGMDNQGIVGYQRQVMREQDEGLEQLEGTVMSTKHIALAVSEELDLQ 170

Query: 415 TRLIDDLEDHVDVTNSRLQRVQKRLAILNKRAKGGCSCMCLMLS 284
           TRLIDDL+ HVDVT+SRL+RVQK LA++NK  + GCSCM ++LS
Sbjct: 171 TRLIDDLDYHVDVTDSRLRRVQKSLAVMNKNMRSGCSCMSMLLS 214

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>SYP52_ARATH (Q94KK7) Syntaxin-52 (AtSYP52)|
          Length = 233

 Score =  148 bits (374), Expect = 1e-35
 Identities = 77/122 (63%), Positives = 92/122 (75%)
 Frame = -2

Query: 595 GQSKKAADDMSRVAGLDNQGIVGLQRQVMREQDEGLERLEETVLSTKHIALAVNEELTLH 416
           G   K  D ++RV+G+DNQGIV  QRQVMREQDEGLE+LEETV+STKHIALAVNEELTL 
Sbjct: 112 GTDLKPDDAINRVSGMDNQGIVVFQRQVMREQDEGLEKLEETVMSTKHIALAVNEELTLQ 171

Query: 415 TRLIDDLEDHVDVTNSRLQRVQKRLAILNKRAKGGCSCMCLMLSXXXXXXXXXXXXXXIK 236
           TRLIDDL+  VD+T+SRL+RVQK LA++NK  K GCSCM ++LS              +K
Sbjct: 172 TRLIDDLDYDVDITDSRLRRVQKSLALMNKSMKSGCSCMSMLLSVLGIVGLALVIWLLVK 231

Query: 235 YL 230
           YL
Sbjct: 232 YL 233

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>SYP61_ARATH (Q946Y7) Syntaxin-61 (AtSYP61) (Osmotic stress-sensitive mutant 1)|
          Length = 245

 Score = 56.2 bits (134), Expect = 7e-08
 Identities = 32/103 (31%), Positives = 58/103 (56%), Gaps = 6/103 (5%)
 Frame = -2

Query: 577 ADDMSRVAGLDNQGIV----GLQRQVMREQDEGLERLEETVLSTKHIALAVNEELTLHTR 410
           A    +  G D+ G V      Q  ++++QDE L+ L ++V     + L +++EL    R
Sbjct: 130 ASRYDQYGGRDDDGFVQSESDRQMLLIKQQDEELDELSKSVQRIGGVGLTIHDELVAQER 189

Query: 409 LIDDLEDHVDVTNSRLQRVQKRLAILNKR--AKGGCSCMCLML 287
           +ID+L+  +D T +RL+ VQK++ ++ K+  AKG    +C +L
Sbjct: 190 IIDELDTEMDSTKNRLEFVQKKVGMVMKKAGAKGQMMMICFLL 232

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>VAM7_YEAST (P32912) Vacuolar morphogenesis protein VAM7|
          Length = 316

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 28/82 (34%), Positives = 42/82 (51%)
 Frame = -2

Query: 565 SRVAGLDNQGIVGLQRQVMREQDEGLERLEETVLSTKHIALAVNEELTLHTRLIDDLEDH 386
           + V G  N  +   Q Q++R+Q++ L  L   + + + +AL +NEEL     L+  LED 
Sbjct: 235 TEVQGRTNNDLQQGQMQMVRDQEQELVALHRIIQAQRGLALEMNEELQTQNELLTALEDD 294

Query: 385 VDVTNSRLQRVQKRLAILNKRA 320
           VD T  RLQ   K+    N  A
Sbjct: 295 VDNTGRRLQIANKKARHFNNSA 316

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>TLG1_SCHPO (Q9HGN3) t-SNARE affecting a late Golgi compartment protein 1|
           (Syntaxin tlg1)
          Length = 225

 Score = 45.8 bits (107), Expect = 9e-05
 Identities = 26/82 (31%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
 Frame = -2

Query: 523 QRQVMREQDEGLERLEETVLSTKHIALAVNEELTLHTRLIDDLEDHVDVTNSRLQRVQKR 344
           Q Q+ ++QD  L+ + +T+ + +  A  + EEL     L+D L++ ++ TNS+L+R  KR
Sbjct: 132 QEQLYQQQDVMLDGVYDTIGNIRGQAALMGEELGQQADLLDTLDNSIETTNSKLRRGMKR 191

Query: 343 L---AILNKRAKGGCSCMCLML 287
           L    I +  +K GC    L++
Sbjct: 192 LKDFTIASADSKSGCCITVLII 213

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>STX8_RAT (Q9Z2Q7) Syntaxin-8|
          Length = 236

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 24/96 (25%), Positives = 51/96 (53%)
 Frame = -2

Query: 574 DDMSRVAGLDNQGIVGLQRQVMREQDEGLERLEETVLSTKHIALAVNEELTLHTRLIDDL 395
           ++     GL    I   Q+++++EQD GL+ L   +   K +   +  EL     +IDDL
Sbjct: 127 EEPEETRGLGFDEIRQQQQKIIQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDL 186

Query: 394 EDHVDVTNSRLQRVQKRLAILNKRAKGGCSCMCLML 287
            + V+ T+ +L+   +R+ ++++++    SC  +M+
Sbjct: 187 ANLVENTDEKLRTEARRVTLVDRKS---ASCGMIMV 219

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>STX8_MOUSE (O88983) Syntaxin-8 (Syntaxin-like protein 3I35)|
          Length = 236

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 23/96 (23%), Positives = 50/96 (52%)
 Frame = -2

Query: 574 DDMSRVAGLDNQGIVGLQRQVMREQDEGLERLEETVLSTKHIALAVNEELTLHTRLIDDL 395
           ++     GL    I   Q+++++EQD GL+ L   +   K +   +  EL     +IDDL
Sbjct: 127 EEPEETRGLGFDEIRQQQQKIIQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDL 186

Query: 394 EDHVDVTNSRLQRVQKRLAILNKRAKGGCSCMCLML 287
            + V+ T+ +L+   +R+ ++++++      M ++L
Sbjct: 187 ANLVENTDEKLRTEARRVTLVDRKSTSCGMIMVILL 222

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>STX5_CAEEL (P83528) Putative syntaxin C15C7.1|
          Length = 122

 Score = 43.9 bits (102), Expect = 4e-04
 Identities = 21/83 (25%), Positives = 45/83 (54%)
 Frame = -2

Query: 535 IVGLQRQVMREQDEGLERLEETVLSTKHIALAVNEELTLHTRLIDDLEDHVDVTNSRLQR 356
           I+  Q Q+++EQD+ LE +  +V + + ++  + +EL   + ++DDL   ++ + +RL  
Sbjct: 26  ILTRQEQIIQEQDDELELVGNSVRTLRGMSSMIGDELDQQSTMLDDLGQEMEYSETRLDT 85

Query: 355 VQKRLAILNKRAKGGCSCMCLML 287
             K++A L         C  +M+
Sbjct: 86  AMKKMAKLTHLEDESSQCKMIMV 108

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>FSV1_SCHPO (O14222) Syntaxin-like protein fsv1|
          Length = 247

 Score = 43.9 bits (102), Expect = 4e-04
 Identities = 22/80 (27%), Positives = 43/80 (53%)
 Frame = -2

Query: 526 LQRQVMREQDEGLERLEETVLSTKHIALAVNEELTLHTRLIDDLEDHVDVTNSRLQRVQK 347
           + +Q++ EQ+E L  +E +V   K +  A+N EL+    L+D++ +  D    R    + 
Sbjct: 157 MHQQMLNEQEESLGGIEASVQRQKRMGYAMNTELSEQNVLLDNMNNDADRIERRFDHAKN 216

Query: 346 RLAILNKRAKGGCSCMCLML 287
           RL  ++++AK    C  ++L
Sbjct: 217 RLNKVSRKAKQYPRCFIILL 236

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>STX8_HUMAN (Q9UNK0) Syntaxin-8|
          Length = 236

 Score = 43.9 bits (102), Expect = 4e-04
 Identities = 24/96 (25%), Positives = 51/96 (53%)
 Frame = -2

Query: 574 DDMSRVAGLDNQGIVGLQRQVMREQDEGLERLEETVLSTKHIALAVNEELTLHTRLIDDL 395
           ++     GL    I   Q+++++EQD GL+ L   +   K +   +  EL     +IDDL
Sbjct: 127 EEPEETRGLGFDEIRQQQQKIIQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDL 186

Query: 394 EDHVDVTNSRLQRVQKRLAILNKRAKGGCSCMCLML 287
            + V+ T+ +L+   +R+ ++++++    SC  +M+
Sbjct: 187 ANLVENTDEKLRNETRRVNMVDRKS---ASCGMIMV 219

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>STX6_CHICK (Q5ZL19) Syntaxin-6|
          Length = 254

 Score = 40.4 bits (93), Expect = 0.004
 Identities = 20/62 (32%), Positives = 36/62 (58%)
 Frame = -2

Query: 523 QRQVMREQDEGLERLEETVLSTKHIALAVNEELTLHTRLIDDLEDHVDVTNSRLQRVQKR 344
           Q+ ++ +QDE LE +  ++   K+++  +  EL     ++DD    +D T+SRL  V K+
Sbjct: 161 QQLIVEQQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLDDFSHELDSTHSRLDNVMKK 220

Query: 343 LA 338
           LA
Sbjct: 221 LA 222

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>STX10_HUMAN (O60499) Syntaxin-10 (Syn10)|
          Length = 249

 Score = 39.3 bits (90), Expect = 0.009
 Identities = 21/62 (33%), Positives = 35/62 (56%)
 Frame = -2

Query: 523 QRQVMREQDEGLERLEETVLSTKHIALAVNEELTLHTRLIDDLEDHVDVTNSRLQRVQKR 344
           Q+ +M EQD+ LE +  ++   KH++  V EEL     ++D     +D T SR+  V ++
Sbjct: 156 QQLIMDEQDQQLEMVSGSIQVLKHMSGRVGEELDEQGIMLDAFAQEMDHTQSRMDGVLRK 215

Query: 343 LA 338
           LA
Sbjct: 216 LA 217

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>SYP72_ARATH (Q94KK6) Syntaxin-72 (AtSYP72)|
          Length = 267

 Score = 38.9 bits (89), Expect = 0.011
 Identities = 20/56 (35%), Positives = 34/56 (60%)
 Frame = -2

Query: 508 REQDEGLERLEETVLSTKHIALAVNEELTLHTRLIDDLEDHVDVTNSRLQRVQKRL 341
           ++QDEGL+ + E + + K++A  +NEEL     L++++E  VD   S L+    RL
Sbjct: 177 KKQDEGLDIISEGLDALKNLARDMNEELDKQVPLMEEMETKVDGATSDLKNTNVRL 232

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>STX6_RAT (Q63635) Syntaxin-6|
          Length = 255

 Score = 38.5 bits (88), Expect = 0.015
 Identities = 19/62 (30%), Positives = 35/62 (56%)
 Frame = -2

Query: 523 QRQVMREQDEGLERLEETVLSTKHIALAVNEELTLHTRLIDDLEDHVDVTNSRLQRVQKR 344
           Q+ ++ +QDE LE +  ++   K+++  +  EL     ++DD    ++ T SRL  V K+
Sbjct: 162 QQLIVEQQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLDDFSHELESTQSRLDNVMKK 221

Query: 343 LA 338
           LA
Sbjct: 222 LA 223

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>STX6_MOUSE (Q9JKK1) Syntaxin-6|
          Length = 255

 Score = 38.5 bits (88), Expect = 0.015
 Identities = 19/62 (30%), Positives = 35/62 (56%)
 Frame = -2

Query: 523 QRQVMREQDEGLERLEETVLSTKHIALAVNEELTLHTRLIDDLEDHVDVTNSRLQRVQKR 344
           Q+ ++ +QDE LE +  ++   K+++  +  EL     ++DD    ++ T SRL  V K+
Sbjct: 162 QQLIVEQQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLDDFSHELESTQSRLDNVMKK 221

Query: 343 LA 338
           LA
Sbjct: 222 LA 223

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>SNP30_ARATH (Q9LMG8) Putative SNAP25 homologous protein SNAP30 (AtSNAP30)|
           (Synaptosomal-associated protein SNAP25-like 3)
          Length = 263

 Score = 37.0 bits (84), Expect = 0.043
 Identities = 19/58 (32%), Positives = 31/58 (53%)
 Frame = -2

Query: 517 QVMREQDEGLERLEETVLSTKHIALAVNEELTLHTRLIDDLEDHVDVTNSRLQRVQKR 344
           Q   +QD+GL  L + +   K +A+ +  E+    + +D L D VD  NSR+Q   +R
Sbjct: 199 QEKAKQDDGLSDLSDILGDLKSMAVDMGSEIDKQNKALDHLGDDVDELNSRVQGANQR 256

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>SYP71_ARATH (Q9SF29) Syntaxin-71 (AtSYP71)|
          Length = 266

 Score = 36.2 bits (82), Expect = 0.073
 Identities = 18/55 (32%), Positives = 33/55 (60%)
 Frame = -2

Query: 505 EQDEGLERLEETVLSTKHIALAVNEELTLHTRLIDDLEDHVDVTNSRLQRVQKRL 341
           +Q++GL+ + E + + K++A  +NEEL     L+D+++  VD   S L+    RL
Sbjct: 177 KQEQGLDMISEGLDALKNMASDMNEELDRQVPLMDEIDTKVDRATSDLKNTNVRL 231

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>BET12_ARATH (Q94CG2) Bet1-like SNARE 1-2 (AtBET12) (Bet1/Sft1-like SNARE 14b)|
           (AtBS14b)
          Length = 130

 Score = 36.2 bits (82), Expect = 0.073
 Identities = 18/69 (26%), Positives = 34/69 (49%)
 Frame = -2

Query: 508 REQDEGLERLEETVLSTKHIALAVNEELTLHTRLIDDLEDHVDVTNSRLQRVQKRLAILN 329
           R+ DE LE L++ V   K +   ++EE+  H RL+D + + +D     +     R  ++ 
Sbjct: 37  RDNDEALENLQDRVSFLKRVTGDIHEEVENHNRLLDKVGNKMDSARGIMSGTINRFKLVF 96

Query: 328 KRAKGGCSC 302
           ++     SC
Sbjct: 97  EKKSNRKSC 105

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>SYP22_ARATH (P93654) Syntaxin-22 (AtSYP22) (AtVAM3)|
          Length = 268

 Score = 35.8 bits (81), Expect = 0.096
 Identities = 22/92 (23%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
 Frame = -2

Query: 550 LDNQGIVGLQRQVMREQDEGLERLEETVLST----KHIALAVNEELTLHTRLIDDLEDHV 383
           LDN+  +     V+ E+++G++ + + +       K +A+ VN++  +    IDD+  H+
Sbjct: 167 LDNE--IAFNEAVIEEREQGIQEIHQQIGEVNEIFKDLAVLVNDQGVM----IDDIGTHI 220

Query: 382 DVTNSRLQRVQKRLAILNKRAKGGCSCMCLML 287
           D + +   + + +L    K  K   S  CL+L
Sbjct: 221 DNSRAATSQGKSQLVQAAKTQKSNSSLTCLLL 252

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>TLG1_YEAST (Q03322) T-SNARE affecting a late Golgi compartment protein 1|
           (Syntaxin TLG1)
          Length = 224

 Score = 35.4 bits (80), Expect = 0.13
 Identities = 20/79 (25%), Positives = 45/79 (56%)
 Frame = -2

Query: 523 QRQVMREQDEGLERLEETVLSTKHIALAVNEELTLHTRLIDDLEDHVDVTNSRLQRVQKR 344
           Q Q++REQD  L+ + +T+ +    A  + +EL    +L+D++++ +D   ++L R +++
Sbjct: 131 QEQMLREQDVHLDGIHKTMQNLHIQAQTMGDELENQGQLLDNMDEGMDGVVNKLARGRRQ 190

Query: 343 LAILNKRAKGGCSCMCLML 287
           L  + ++ K      C+ L
Sbjct: 191 LEWVYEKNKEKYDDCCIGL 209

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>SNP33_ARATH (Q9S7P9) SNAP25 homologous protein SNAP33 (AtSNAP33)|
           (Synaptosomal-associated protein SNAP25-like 1)
           (SNAP-25-like protein 1) (Snap25a)
          Length = 300

 Score = 35.0 bits (79), Expect = 0.16
 Identities = 17/54 (31%), Positives = 31/54 (57%)
 Frame = -2

Query: 505 EQDEGLERLEETVLSTKHIALAVNEELTLHTRLIDDLEDHVDVTNSRLQRVQKR 344
           +QD+GL  L + +   K++A+ +  E+    + +D L D VD  N R+Q+  +R
Sbjct: 240 KQDDGLSDLSDILGELKNMAVDMGSEIEKQNKGLDHLHDDVDELNFRVQQSNQR 293

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>DPO4_CLOPE (Q8XK37) DNA polymerase IV (EC 2.7.7.7) (Pol IV)|
          Length = 359

 Score = 34.7 bits (78), Expect = 0.21
 Identities = 19/74 (25%), Positives = 43/74 (58%)
 Frame = -2

Query: 538 GIVGLQRQVMREQDEGLERLEETVLSTKHIALAVNEELTLHTRLIDDLEDHVDVTNSRLQ 359
           GI+G + +++ E   G++  +   ++   I  ++ +E+TL    I+D+E+ +++     +
Sbjct: 216 GILGDRGKILYEFARGIDNRQ---VNPYRIRKSIGKEITLRED-IEDIEEMIEILEKISE 271

Query: 358 RVQKRLAILNKRAK 317
           RV + L +LNK+ K
Sbjct: 272 RVSESLCLLNKKGK 285

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>SYP21_ARATH (Q39233) Syntaxin-21 (AtSYP21) (PEP12 homolog) (AtPEP12) (aPEP12)|
          Length = 279

 Score = 33.9 bits (76), Expect = 0.36
 Identities = 21/97 (21%), Positives = 50/97 (51%), Gaps = 6/97 (6%)
 Frame = -2

Query: 559 VAGLDNQGIVGLQRQVMREQDEGLERLEETVLST----KHIALAVNEELTLHTRLIDDLE 392
           V  LDN+  +     ++ E+++G+  +E+ +       K +AL VN +      ++DD+ 
Sbjct: 175 VVFLDNE--ITFNEAIIEEREQGIREIEDQIRDVNGMFKDLALMVNHQ----GNIVDDIS 228

Query: 391 DHVDVTNSRLQR--VQKRLAILNKRAKGGCSCMCLML 287
            ++D +++   +  VQ R A   +R+    +C+ +++
Sbjct: 229 SNLDNSHAATTQATVQLRKAAKTQRSNSSLTCLLILI 265

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>SEC9_CANGA (Q6FY22) Protein transport protein SEC9|
          Length = 694

 Score = 33.5 bits (75), Expect = 0.48
 Identities = 18/56 (32%), Positives = 30/56 (53%)
 Frame = -2

Query: 505 EQDEGLERLEETVLSTKHIALAVNEELTLHTRLIDDLEDHVDVTNSRLQRVQKRLA 338
           E D  L+++++     K +ALA  EEL    R I D+E++ D  + ++     RLA
Sbjct: 636 EIDRNLDKIQQISGRLKKLALATGEELDSQQRRIRDIEENTDEMDIKIHMNTTRLA 691

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>BET11_ARATH (Q9M2J9) Bet1-like SNARE 1-1 (AtBET11) (Bet1/Sft1-like SNARE 14a)|
           (AtBS14a)
          Length = 122

 Score = 33.1 bits (74), Expect = 0.62
 Identities = 15/54 (27%), Positives = 29/54 (53%)
 Frame = -2

Query: 505 EQDEGLERLEETVLSTKHIALAVNEELTLHTRLIDDLEDHVDVTNSRLQRVQKR 344
           E +  LE L++ V+  K ++  +NEE+  H R++D + + +D +   L     R
Sbjct: 37  ENERALEGLQDRVILLKRLSGDINEEVDTHNRMLDRMGNDMDSSRGFLSGTMDR 90

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>SNP29_ARATH (Q9SD96) SNAP25 homologous protein SNAP29 (AtSNAP29)|
           (Synaptosomal-associated protein SNAP25-like 2)
          Length = 251

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 17/73 (23%), Positives = 37/73 (50%)
 Frame = -2

Query: 541 QGIVGLQRQVMREQDEGLERLEETVLSTKHIALAVNEELTLHTRLIDDLEDHVDVTNSRL 362
           + +   Q+  + +QDE L  L   +   K++A+ +   +   T  +D L+D+ D  N R+
Sbjct: 179 EAVDAYQKTQIAKQDEALTDLSALLGELKNMAVDMGTAIERQTNELDHLQDNADELNYRV 238

Query: 361 QRVQKRLAILNKR 323
           ++  +R   L ++
Sbjct: 239 KQSNQRARYLLRK 251

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>RB6I2_HUMAN (Q8IUD2) RAB6-interacting protein 2 (ERC protein 1)|
          Length = 1116

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 19/66 (28%), Positives = 37/66 (56%)
 Frame = -2

Query: 523 QRQVMREQDEGLERLEETVLSTKHIALAVNEELTLHTRLIDDLEDHVDVTNSRLQRVQKR 344
           Q+Q +  +DE +++L E +L +K ++    EE    TR + + E HV    S L++ +K 
Sbjct: 298 QKQTLNARDESIKKLLE-MLQSKGLSAKATEEDHERTRRLAEAEMHVHHLESLLEQKEKE 356

Query: 343 LAILNK 326
            ++L +
Sbjct: 357 NSMLRE 362

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>PAWR_RAT (Q62627) PRKC apoptosis WT1 regulator protein (Prostate apoptosis|
           response-4 protein) (Par-4) (Transcriptional repressor
           Par-4-like protein PAWR)
          Length = 332

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 21/65 (32%), Positives = 36/65 (55%)
 Frame = -2

Query: 535 IVGLQRQVMREQDEGLERLEETVLSTKHIALAVNEELTLHTRLIDDLEDHVDVTNSRLQR 356
           I  L+++V+RE+ E L RL   +   + +   + EE+ L  R +DD+ED     N +L++
Sbjct: 264 IEDLEKEVLRERQENL-RLTRLMQDKEEMIGKLKEEIDLLNRDLDDMEDE----NEQLKQ 318

Query: 355 VQKRL 341
             K L
Sbjct: 319 ENKTL 323

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>CCD39_MOUSE (Q9D5Y1) Coiled-coil domain-containing protein 39|
          Length = 937

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 20/69 (28%), Positives = 32/69 (46%)
 Frame = -2

Query: 523 QRQVMREQDEGLERLEETVLSTKHIALAVNEELTLHTRLIDDLEDHVDVTNSRLQRVQKR 344
           QRQ+ RE  E ++ +E T     H+A    E+LT    L   L    +    +LQR+ K+
Sbjct: 744 QRQI-RELQEDIQSMENTFEVIGHLANNAKEKLTEKQTLAFQLRKETEEQKPKLQRITKQ 802

Query: 343 LAILNKRAK 317
              L +  +
Sbjct: 803 CGRLRREIR 811

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>CING_HUMAN (Q9P2M7) Cingulin|
          Length = 1197

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 22/64 (34%), Positives = 34/64 (53%)
 Frame = -2

Query: 532 VGLQRQVMREQDEGLERLEETVLSTKHIALAVNEELTLHTRLIDDLEDHVDVTNSRLQRV 353
           VGL+RQ + E+ E   RL+E +   K  A   N+EL    RL+D  ED      +++  +
Sbjct: 384 VGLERQ-LEEKTEECSRLQELLERRKGEAQQSNKELQNMKRLLDQGEDLRHGLETQVMEL 442

Query: 352 QKRL 341
           Q +L
Sbjct: 443 QNKL 446

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>APSB_EMENI (O60039) Anucleate primary sterigmata protein B|
          Length = 1051

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 7/73 (9%)
 Frame = -2

Query: 511 MREQDEGLERLEETVLSTKHIALAVNEELTLHTRLIDDLEDHVDVTNSRLQRV------- 353
           MR   EG+ RLEE   +      AV +EL      ++ LE  +   NS++QR+       
Sbjct: 441 MRSASEGIIRLEEDAQNNLQRYKAVQQELEQCNEEMESLEKSLYEANSKVQRLTVQIESS 500

Query: 352 QKRLAILNKRAKG 314
           Q  +A L +   G
Sbjct: 501 QNEIAFLREEQDG 513

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>PAWR_MOUSE (Q925B0) PRKC apoptosis WT1 regulator protein (Prostate apoptosis|
           response-4 protein) (Par-4) (Fragment)
          Length = 197

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 21/65 (32%), Positives = 36/65 (55%)
 Frame = -2

Query: 535 IVGLQRQVMREQDEGLERLEETVLSTKHIALAVNEELTLHTRLIDDLEDHVDVTNSRLQR 356
           I  L+++V+RE+ E L RL   +   + +   + EE+ L  R +DD+ED     N +L++
Sbjct: 129 IEDLEKEVVRERQENL-RLVRLMQDKEEMIGKLKEEIDLLNRDLDDMEDE----NEQLKQ 183

Query: 355 VQKRL 341
             K L
Sbjct: 184 ENKTL 188

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>PAWR_HUMAN (Q96IZ0) PRKC apoptosis WT1 regulator protein (Prostate apoptosis|
           response-4 protein) (Par-4)
          Length = 340

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 21/65 (32%), Positives = 36/65 (55%)
 Frame = -2

Query: 535 IVGLQRQVMREQDEGLERLEETVLSTKHIALAVNEELTLHTRLIDDLEDHVDVTNSRLQR 356
           I  L+++V+RE+ E L RL   +   + +   + EE+ L  R +DD+ED     N +L++
Sbjct: 272 IEDLEKEVVRERQENL-RLVRLMQDKEEMIGKLKEEIDLLNRDLDDIEDE----NEQLKQ 326

Query: 355 VQKRL 341
             K L
Sbjct: 327 ENKTL 331

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>TPM_TRISP (Q95VA8) Tropomyosin|
          Length = 284

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 16/62 (25%), Positives = 30/62 (48%)
 Frame = -2

Query: 508 REQDEGLERLEETVLSTKHIALAVNEELTLHTRLIDDLEDHVDVTNSRLQRVQKRLAILN 329
           R+Q E +E+LEE +  T+   + V  EL      +      ++    ++Q  +  +A LN
Sbjct: 30  RQQQERVEKLEEELRDTQKKMMQVENELDKAQEELTGANAQLEEKEKKVQEAEAEVAALN 89

Query: 328 KR 323
           +R
Sbjct: 90  RR 91

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>TPM_TRIPS (Q8WR63) Tropomyosin|
          Length = 284

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 16/62 (25%), Positives = 30/62 (48%)
 Frame = -2

Query: 508 REQDEGLERLEETVLSTKHIALAVNEELTLHTRLIDDLEDHVDVTNSRLQRVQKRLAILN 329
           R+Q E +E+LEE +  T+   + V  EL      +      ++    ++Q  +  +A LN
Sbjct: 30  RQQQERVEKLEEELRDTQKKMMQVENELDKAQEELTGANAQLEEKEKKVQEAEAEVAALN 89

Query: 328 KR 323
           +R
Sbjct: 90  RR 91

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>RB6I2_MOUSE (Q99MI1) RAB6-interacting protein 2 (ERC protein 1) (ERC1)|
           (CAZ-associated structural protein 2) (CAST2)
          Length = 1120

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 19/66 (28%), Positives = 36/66 (54%)
 Frame = -2

Query: 523 QRQVMREQDEGLERLEETVLSTKHIALAVNEELTLHTRLIDDLEDHVDVTNSRLQRVQKR 344
           Q+Q +  +DE +++L E +L +K ++    EE    TR + + E HV    S L++ +K 
Sbjct: 298 QKQTLNARDESIKKLLE-MLQSKGLSAKATEEDHERTRRLAEAEMHVHHLESLLEQKEKE 356

Query: 343 LAILNK 326
             +L +
Sbjct: 357 NNMLRE 362

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>RB6I2_RAT (Q811U3) RAB6-interacting protein 2 (ERC protein 1) (ERC1)|
           (CAZ-associated structural protein 2) (CAST2)
          Length = 948

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 19/66 (28%), Positives = 36/66 (54%)
 Frame = -2

Query: 523 QRQVMREQDEGLERLEETVLSTKHIALAVNEELTLHTRLIDDLEDHVDVTNSRLQRVQKR 344
           Q+Q +  +DE +++L E +L +K ++    EE    TR + + E HV    S L++ +K 
Sbjct: 298 QKQTLNARDESIKKLLE-MLQSKGLSAKATEEDHERTRRLAEAEMHVHHLESLLEQKEKE 356

Query: 343 LAILNK 326
             +L +
Sbjct: 357 NNMLRE 362

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>YPBR_BACSU (P54159) Hypothetical protein ypbR|
          Length = 1193

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 18/78 (23%), Positives = 36/78 (46%)
 Frame = -2

Query: 574 DDMSRVAGLDNQGIVGLQRQVMREQDEGLERLEETVLSTKHIALAVNEELTLHTRLIDDL 395
           +++SR+       +  L  Q +R     L+   E +   +  A +  E+L +HT L+  L
Sbjct: 252 EELSRIEQQSKSNMQALTEQKVRNL---LKEHTEMLKKDETGAPSFAEQLNIHTGLVQSL 308

Query: 394 EDHVDVTNSRLQRVQKRL 341
            D +D    ++   +KR+
Sbjct: 309 RDQLDEAEKQMTEAEKRM 326

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>HR38_DROME (P49869) Probable nuclear hormone receptor HR38 (dHR38)|
          Length = 1073

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 27/91 (29%), Positives = 35/91 (38%), Gaps = 26/91 (28%)
 Frame = -1

Query: 368 PSSACAKAACNSEQARQRWLLMHVPNALC--------CRHSAAR------GY-------- 255
           P+SA +  A    QA +   L+  P+ LC        C+H   R      G+        
Sbjct: 719 PNSAASSPASADLQAGR---LLQAPSQLCAVCGDTAACQHYGVRTCEGCKGFFKRTVQKG 775

Query: 254 ----CLASHQVPVKKRPRNRCSMQRLFDALL 174
               CLA    PV KR RNRC   R    L+
Sbjct: 776 SKYVCLADKNCPVDKRRRNRCQFCRFQKCLV 806

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>GRAU_DROME (Q9U405) Transcription factor grauzone|
          Length = 570

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 9/55 (16%)
 Frame = -1

Query: 356 CAKAACNSEQARQRWLLMHVPNALC------CRHSAARGYCLASHQ---VPVKKR 219
           C K   NS   R  WL+ HVP+  C      C    +R   L  H+   VPV +R
Sbjct: 301 CGKVFANSSVLRAHWLVHHVPDEECDFQCEDCGKRFSRRNLLELHKGSHVPVNER 355

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>NOP14_YEAST (Q99207) Nucleolar complex protein 14 (U3 small nucleolar|
           RNA-associated protein 2) (U3 snoRNA-associated protein
           2)
          Length = 810

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
 Frame = -2

Query: 547 DNQGIVGLQRQVMREQDEGLERLEETVLSTKHIALAVNEELTLHTRLID-----DLEDHV 383
           DN GI      +  E D+G +     +L  K+I+++       H  L+D     DL+DH 
Sbjct: 345 DNDGIADSDDDIKFE-DQGRDEGFSQILKKKNISISCPRT---HDALLDQVKKLDLDDHP 400

Query: 382 DVTNSRLQRVQKRLAILNKRAKGGCSCMCL 293
            +  + ++  Q +LA  NK   G  + + L
Sbjct: 401 KIVKNIIKAYQPKLAEGNKEKLGKFTAVLL 430

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>MFP1_TOBAC (Q9M7J4) MAR binding filament-like protein 1-1|
          Length = 722

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 10/95 (10%)
 Frame = -2

Query: 592 QSKKAADDMSR----VAGLDNQGIVGLQRQVMREQD------EGLERLEETVLSTKHIAL 443
           ++++AAD++ +    V  L+ + +  L+ Q+ RE++      E LER  E++      A 
Sbjct: 539 KAERAADELKQEKNIVVTLEKE-LTFLEAQITREKESRKNLEEELERATESLDEMNRNAF 597

Query: 442 AVNEELTLHTRLIDDLEDHVDVTNSRLQRVQKRLA 338
           A+ +EL L    I  LED  +V    +   QK+++
Sbjct: 598 ALAKELELANSHISSLEDEREVLQKSVSE-QKQIS 631

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>UPP_THET2 (Q72J35) Uracil phosphoribosyltransferase (EC 2.4.2.9) (UMP|
           pyrophosphorylase) (UPRTase)
          Length = 208

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = -2

Query: 550 LDNQGIVGLQRQVMREQDEGLERLEETVLSTKHIALAVNEELTLHTRLIDDLEDHVD 380
           L  +G  G++   +    EGLER+ +    T+ +  A++E L  H  ++  L D  D
Sbjct: 146 LKERGATGVKLMAILAAPEGLERIAKDHPDTEVVVAAIDERLNDHGYIVPGLGDAGD 202

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>NR4A1_MOUSE (P12813) Orphan nuclear receptor NR4A1 (Orphan nuclear receptor|
           HMR) (Nuclear hormone receptor NUR/77) (N10 nuclear
           protein)
          Length = 601

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 269 AARGYCLASHQVPVKKRPRNRCSMQR 192
           +A+  CLA+   PV KR RNRC   R
Sbjct: 301 SAKYICLANKDCPVDKRRRNRCQFCR 326

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>NR4A1_RAT (P22829) Orphan nuclear receptor NR4A1 (Orphan nuclear receptor|
           HMR) (Nerve growth factor-induced protein I-B) (NGFI-B)
           (NUR77)
          Length = 597

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 269 AARGYCLASHQVPVKKRPRNRCSMQR 192
           +A+  CLA+   PV KR RNRC   R
Sbjct: 297 SAKYICLANKDCPVDKRRRNRCQFCR 322

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>KCNN4_HUMAN (O15554) Intermediate conductance calcium-activated potassium|
           channel protein 4 (SK4) (KCa4) (IK1) (IKCa1) (Putative
           Gardos channel)
          Length = 427

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -1

Query: 191 LFDALLKCAVSLKIYTMVCVAVLFTVLE-RLYQHVQGMRLWHL 66
           L+  L+KC +S+  + ++C+ V F   E +L+    G+R W +
Sbjct: 56  LYLFLVKCTISISTFLLLCLIVAFHAKEVQLFMTDNGLRDWRV 98

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>NR4A2_XENLA (Q04913) Orphan nuclear receptor NR4A2 (Orphan nuclear receptor|
           NURR1) (Nerve growth factor-induced protein I-B homolog)
          Length = 577

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -1

Query: 266 ARGYCLASHQVPVKKRPRNRCSMQRLFDALL 174
           A+  CLA+   PV KR RNRC   R    L+
Sbjct: 278 AKYICLANKDCPVDKRRRNRCQFCRFQKCLV 308

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>HOOK1_HUMAN (Q9UJC3) Hook homolog 1 (h-hook1) (hHK1)|
          Length = 728

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 18/68 (26%), Positives = 34/68 (50%)
 Frame = -2

Query: 526 LQRQVMREQDEGLERLEETVLSTKHIALAVNEELTLHTRLIDDLEDHVDVTNSRLQRVQK 347
           LQ Q  + + E   +L++ + +       V+EEL     LI+DL+  +   N  +Q++ +
Sbjct: 531 LQEQGSKSEGESSSKLKQKLEAHMEKLTEVHEELQKKQELIEDLQPDI---NQNVQKINE 587

Query: 346 RLAILNKR 323
             A L K+
Sbjct: 588 LEAALQKK 595


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,365,797
Number of Sequences: 219361
Number of extensions: 1728557
Number of successful extensions: 4876
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 4722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4874
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5196311029
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result