>HNF3B_RAT (P32182) Hepatocyte nuclear factor 3-beta (HNF-3B) (Forkhead box|
           protein A2)
          Length = 458

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
 Frame = +2

Query: 221 PLPRYGQSEQSSAPLIAPLYHPYL----HLQP 304
           P P  GQ +Q++A L+ P +HP L    HL+P
Sbjct: 335 PAPSPGQQQQAAAHLLGPPHHPGLPPEAHLKP 366

>YL085_MIMIV (Q5UPG1) Putative BTB/POZ domain-containing protein L85|
          Length = 419

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -3

Query: 296 DADKDDKEXQSKEQSSAQTDHNAEAE 219
           D+D+D  E +S+  S  +++HN+E E
Sbjct: 254 DSDEDASETESEHNSETESEHNSETE 279

>HNF3B_MOUSE (P35583) Hepatocyte nuclear factor 3-beta (HNF-3B) (Forkhead box|
           protein A2)
          Length = 459

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
 Frame = +2

Query: 221 PLPRYGQSEQSSAPLIAPLYHPYL----HLQP 304
           P P  GQ +Q++A L+ P +HP L    HL+P
Sbjct: 336 PAPSPGQQQQAAAHLLGPPHHPGLPPEAHLKP 367

>HNF3B_HUMAN (Q9Y261) Hepatocyte nuclear factor 3-beta (HNF-3B) (Forkhead box|
           protein A2)
          Length = 457

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
 Frame = +2

Query: 221 PLPRYGQSEQSSAPLIAPLYHPYL----HLQP 304
           P P  GQ +Q++A L+ P +HP L    HL+P
Sbjct: 335 PAPSPGQQQQAAAHLLGPPHHPGLPPEAHLKP 366

>ARI4A_HUMAN (P29374) AT-rich interactive domain-containing protein 4A (ARID|
           domain-containing protein 4A) (Retinoblastoma-binding
           protein 1) (RBBP-1)
          Length = 1257

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -3

Query: 299 EDADKDDKEXQSKEQSSAQTDHNAEAERXGG*KSIFPC 186
           ED+DKD  E + K Q   +T+   ++E     + + PC
Sbjct: 536 EDSDKDSDEEEEKSQEREETESKCDSEGEEDEEDMEPC 573

>GAL7_YEAST (P08431) Galactose-1-phosphate uridylyltransferase (EC 2.7.7.12)|
           (Gal-1-P uridylyltransferase)
           (UDP-glucose--hexose-1-phosphate uridylyltransferase)
          Length = 365

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 18/38 (47%), Positives = 21/38 (55%)
 Frame = +2

Query: 197 LIFIHRVAPLPRYGQSEQSSAPLIAPLYHPYLHLQPGN 310
           L+  HR A  P  GQ E +  P  APLY P  +L PGN
Sbjct: 24  LVSPHR-AKRPWLGQQEAAYKPT-APLYDPKCYLCPGN 59

>TCF8_RAT (Q62947) Transcription factor 8 (Zinc finger homeodomain|
            enhancer-binding protein) (Zfhep)
          Length = 1109

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 8/31 (25%), Positives = 21/31 (67%)
 Frame = -3

Query: 299  EDADKDDKEXQSKEQSSAQTDHNAEAERXGG 207
            E+ +++++E + +E+ + + +H A A + GG
Sbjct: 1046 EEEEEEEEEEEEEEEEAEEAEHEAAAAKTGG 1076

>SFR15_RAT (Q63627) Splicing factor, arginine/serine-rich 15 (CTD-binding|
            SR-like protein RA4) (Fragment)
          Length = 1048

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 14/55 (25%), Positives = 29/55 (52%)
 Frame = -3

Query: 296  DADKDDKEXQSKEQSSAQTDHNAEAERXGG*KSIFPCYFESPLISVNDRTAITPI 132
            D D  D+E + +++ S   + +  A+R GG K++     E+PL  V +   ++ +
Sbjct: 962  DRDSRDRESRREKEESRGKEKHEVADRAGGNKAV-----EAPLSQVGNTDTVSEL 1011

>TGA5_ARATH (Q39163) Transcription factor TGA5 (Ocs element-binding factor 5)|
           (OBF5) (AtbZIP26)
          Length = 330

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 21/75 (28%), Positives = 33/75 (44%)
 Frame = -3

Query: 287 KDDKEXQSKEQSSAQTDHNAEAERXGG*KSIFPCYFESPLISVNDRTAITPIIWMFSQSL 108
           ++DK  Q KE SSA   H  ++E       +   Y E  L  +    A + +  + S   
Sbjct: 122 QEDKNRQMKELSSAIDSHATDSELRIIVDGVIAHYEE--LYRIKGNAAKSDVFHLLSGMW 179

Query: 107 KCVTDHKSCFIWMLG 63
           K  T  + CF+W+ G
Sbjct: 180 K--TPAERCFLWLGG 192

>ENV_SIVVG (P27977) Envelope polyprotein GP160 precursor [Contains: Exterior|
           membrane glycoprotein (GP120); Transmembrane
           glycoprotein (GP41)]
          Length = 877

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +1

Query: 85  DLWSVTHFKDWLNIQIIGVIAVLSFTLIR 171
           D WS   F  WLNI  IG + VL    +R
Sbjct: 695 DFWSWFDFSKWLNILKIGFLDVLGIIGLR 723


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,180,352
Number of Sequences: 219361
Number of extensions: 634555
Number of successful extensions: 1720
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1719
length of database: 80,573,946
effective HSP length: 91
effective length of database: 60,612,095
effective search space used: 1454690280
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)