ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd23b08 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|D14161.1|BLYIDS4G Hordeum vulgare ids-4 mRNA, complete cds Length = 822 Score = 613 bits (309), Expect = e-172 Identities = 336/349 (96%) Strand = Plus / Minus Query: 1 caattcctttcaaatnnaatcagctaaatgacacacanactttctgcctacagctccaaa 60 ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| Sbjct: 784 caattcctttcaaatcaaatcagctaaatgacacacacactttctgcctacagctccaaa 725 Query: 61 actccaagcatccaaataaaacatgacttatggtcggtcacacatttcaaagactggcta 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 724 actccaagcatccaaataaaacatgacttatggtcggtcacacatttcaaagactggcta 665 Query: 121 aacatccagattattggtgttatagcagttctatcatttacacttatcaggggagattca 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 664 aacatccagattattggtgttatagcagttctatcatttacacttatcaggggagattca 605 Query: 181 aaatagcatggaaagattgatttttatccaccgngtcgctccgcttccgcgttatggtca 240 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 604 aaatagcatggaaagattgatttttatccaccgcgtcgctccgcttccgcgttatggtca 545 Query: 241 gtctgagcagagctctgctcctttgattgcncctctttatcatccttatctgcatcttca 300 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 544 gtctgagcagagctctgctcctttgattgcacctctttatcatccttatctgcatcttca 485 Query: 301 acctggaaatctgtcanggnntctaacagcgagctntnanaagttncgg 349 |||||| ||||||||| || |||||||||||||| | | ||||| ||| Sbjct: 484 acctgggaatctgtcaaggaatctaacagcgagctctcagaagttacgg 436
>ref|NM_185122.1| Oryza sativa (japonica cultivar-group), mRNA Length = 963 Score = 54.0 bits (27), Expect = 3e-04 Identities = 50/58 (86%) Strand = Plus / Minus Query: 254 tctgctcctttgattgcncctctttatcatccttatctgcatcttcaacctggaaatc 311 |||||||| |||||||| ||||||||||||| | || |||||||||| |||| |||| Sbjct: 919 tctgctcccttgattgcacctctttatcatcatcttcagcatcttcaatctgggaatc 862
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 54.0 bits (27), Expect = 3e-04 Identities = 50/58 (86%) Strand = Plus / Minus Query: 254 tctgctcctttgattgcncctctttatcatccttatctgcatcttcaacctggaaatc 311 |||||||| |||||||| ||||||||||||| | || |||||||||| |||| |||| Sbjct: 34454641 tctgctcccttgattgcacctctttatcatcatcttcagcatcttcaatctgggaatc 34454584 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 152 tatcatttacacttatcaggg 172 ||||||||||||||||||||| Sbjct: 34454741 tatcatttacacttatcaggg 34454721
>gb|AC096687.5| Oryza sativa chromosome 3 BAC OSJNBa0010E04 genomic sequence, complete sequence Length = 117505 Score = 54.0 bits (27), Expect = 3e-04 Identities = 50/58 (86%) Strand = Plus / Plus Query: 254 tctgctcctttgattgcncctctttatcatccttatctgcatcttcaacctggaaatc 311 |||||||| |||||||| ||||||||||||| | || |||||||||| |||| |||| Sbjct: 71526 tctgctcccttgattgcacctctttatcatcatcttcagcatcttcaatctgggaatc 71583 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 152 tatcatttacacttatcaggg 172 ||||||||||||||||||||| Sbjct: 71426 tatcatttacacttatcaggg 71446
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 54.0 bits (27), Expect = 3e-04 Identities = 50/58 (86%) Strand = Plus / Minus Query: 254 tctgctcctttgattgcncctctttatcatccttatctgcatcttcaacctggaaatc 311 |||||||| |||||||| ||||||||||||| | || |||||||||| |||| |||| Sbjct: 34544713 tctgctcccttgattgcacctctttatcatcatcttcagcatcttcaatctgggaatc 34544656 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 152 tatcatttacacttatcaggg 172 ||||||||||||||||||||| Sbjct: 34544813 tatcatttacacttatcaggg 34544793
>dbj|AK067674.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013120K12, full insert sequence Length = 1109 Score = 54.0 bits (27), Expect = 3e-04 Identities = 50/58 (86%) Strand = Plus / Minus Query: 254 tctgctcctttgattgcncctctttatcatccttatctgcatcttcaacctggaaatc 311 |||||||| |||||||| ||||||||||||| | || |||||||||| |||| |||| Sbjct: 867 tctgctcccttgattgcacctctttatcatcatcttcagcatcttcaatctgggaatc 810 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 152 tatcatttacacttatcaggg 172 ||||||||||||||||||||| Sbjct: 967 tatcatttacacttatcaggg 947
>dbj|AK066364.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013066K23, full insert sequence Length = 1257 Score = 54.0 bits (27), Expect = 3e-04 Identities = 50/58 (86%) Strand = Plus / Minus Query: 254 tctgctcctttgattgcncctctttatcatccttatctgcatcttcaacctggaaatc 311 |||||||| |||||||| ||||||||||||| | || |||||||||| |||| |||| Sbjct: 1039 tctgctcccttgattgcacctctttatcatcatcttcagcatcttcaatctgggaatc 982
>gb|CP000141.1| Carboxydothermus hydrogenoformans Z-2901, complete genome Length = 2401520 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 189 tggaaagattgatttttatcc 209 ||||||||||||||||||||| Sbjct: 312951 tggaaagattgatttttatcc 312931
>gb|AC154746.2| Mus musculus BAC clone RP24-396N7 from chromosome 14, complete sequence Length = 184783 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 174 agattcaaaatagcatggaaa 194 ||||||||||||||||||||| Sbjct: 36566 agattcaaaatagcatggaaa 36546
>gb|AC129184.3| Mus musculus BAC clone RP23-358F24 from 5, complete sequence Length = 203369 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 185 agcatggaaagattgattttt 205 ||||||||||||||||||||| Sbjct: 53822 agcatggaaagattgattttt 53842
>dbj|AP001381.5| Homo sapiens genomic DNA, chromosome 18 clone:RP11-881L2, complete sequence Length = 65000 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 58 aaaactccaagcatccaaata 78 ||||||||||||||||||||| Sbjct: 58638 aaaactccaagcatccaaata 58658
>gb|AC166332.7| Mus musculus chromosome 1, clone RP24-266F18, complete sequence Length = 167566 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 58 aaaactccaagcatccaaataaaa 81 ||||||||||| |||||||||||| Sbjct: 68072 aaaactccaagaatccaaataaaa 68049
>ref|XM_453265.1| Kluyveromyces lactis NRRL Y-1140, KLLA0D04554g predicted mRNA Length = 3069 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 189 tggaaagattgatttttatc 208 |||||||||||||||||||| Sbjct: 2468 tggaaagattgatttttatc 2487
>emb|CR382124.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome D of strain NRRL Y-1140 of Kluyveromyces lactis Length = 1715506 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 189 tggaaagattgatttttatc 208 |||||||||||||||||||| Sbjct: 386334 tggaaagattgatttttatc 386315
>gb|AC099772.3| Mus Musculus Chromosome 5 RP23-319P12 Strain C57Bl6/J, complete sequence Length = 190514 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 293 catcttcaacctggaaatct 312 |||||||||||||||||||| Sbjct: 87221 catcttcaacctggaaatct 87240
>dbj|AK053635.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched library, clone:E130116I15 product:unclassifiable, full insert sequence Length = 2392 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 293 catcttcaacctggaaatct 312 |||||||||||||||||||| Sbjct: 875 catcttcaacctggaaatct 894
>gb|AC112679.15| Mus musculus chromosome 1, clone RP23-199H14, complete sequence Length = 185805 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 58 aaaactccaagcatccaaataaaa 81 ||||||||||| |||||||||||| Sbjct: 152815 aaaactccaagaatccaaataaaa 152792
>gb|AC007654.2|AC007654 Genomic sequence for Arabidopsis thaliana BAC T19E23 from chromosome I, complete sequence Length = 87618 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 ggtcggtcacacatttcaaa 111 |||||||||||||||||||| Sbjct: 13099 ggtcggtcacacatttcaaa 13118
>gb|AC112967.14| Mus musculus chromosome 19, clone RP24-151O21, complete sequence Length = 167743 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 234 atggtcagtctgagcagagc 253 |||||||||||||||||||| Sbjct: 58160 atggtcagtctgagcagagc 58179
>emb|AL773597.29| Mouse DNA sequence from clone RP23-80A13 on chromosome 4, complete sequence Length = 252286 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 ccaaataaaacatgacttat 91 |||||||||||||||||||| Sbjct: 228238 ccaaataaaacatgacttat 228219 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,933,840 Number of Sequences: 3902068 Number of extensions: 2933840 Number of successful extensions: 52961 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 52902 Number of HSP's gapped (non-prelim): 59 length of query: 349 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 327 effective length of database: 17,147,199,772 effective search space: 5607134325444 effective search space used: 5607134325444 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
