ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd22m08 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AB109216.1| Triticum aestivum mRNA for cysteine protease, complete cds Length = 1260 Score = 656 bits (331), Expect = 0.0 Identities = 466/507 (91%), Gaps = 3/507 (0%) Strand = Plus / Minus Query: 124 atactaactacatgacgggataagcaccgtacatggccatgccacacagcccgcggggcc 183 ||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||| Sbjct: 1153 atactaactacatgacggggtaggcaccgtacatggcgatgccacacagcccgcggggcc 1094 Query: 184 cgtcggctcccctacgcatgaagaagaagccattctggccccacgtctggccccacgagt 243 ||||||||||||| |||| |||||||||||| ||||| ||||| ||||| |||||||||| Sbjct: 1093 cgtcggctcccctgcgcacgaagaagaagcccttctgaccccaggtctgtccccacgagt 1034 Query: 244 tcttggcgatccagtactcttctccggcgccggtgaccccgtagccgaccaccgtcacca 303 |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| Sbjct: 1033 tcttggcgatccagtactcttctccggcaccggtgactccgtagccgaccaccgtcacca 974 Query: 304 cgtggttctggctggtggtgcacggccccttgtacacgccggatttgtagttctgcagca 363 ||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||| | Sbjct: 973 cgtggttctggctggtggtgcacggccccctgtacacgccggacttgtagtcctgcagga 914 Query: 364 cggagccgctcccgtcgatctggacggtcaccggcgtcctgagcacggccagcgccagcg 423 ||| ||||||||||||||||||||||||||||||| ||| |||||| ||||||||||| | Sbjct: 913 cggggccgctcccgtcgatctggacggtcaccggcctcccgagcac-gccagcgccag-g 856 Query: 424 cgttctcgttgctccccggctgcacgtcctggacgccggtgatcttgccgatgcgtcggg 483 | ||||| |||| |||||| | || ||||||||||||||||| ||||||| || |||| Sbjct: 855 ggctctcgctgctgcccggccgtacatcctggacgccggtgattttgccgacacg-cggg 797 Query: 484 cagcgtcgtgcaccgtgcatctgcctcgcttggccacgtaggggtactcggcctccgtga 543 | | ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 796 ctgtgtcgtgcaccgcgcatctgcctcgcttggccatgtaggggtactcggcctccgtga 737 Query: 544 ggaggccaccttttgatttgatccactggagtgcgctcttgggccacccgtagccgcacg 603 ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct: 736 ggaggcccccttttgatttgatccatgcgagtgcgctcttgggccacccgtagccgcatg 677 Query: 604 gcgagctgaacacacccgtgctgcagt 630 ||||||||||||| ||||||||||||| Sbjct: 676 gcgagctgaacacgcccgtgctgcagt 650
>ref|NM_183859.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1074 Score = 63.9 bits (32), Expect = 6e-07 Identities = 38/40 (95%) Strand = Plus / Minus Query: 222 ccccacgtctggccccacgagttcttggcgatccagtact 261 |||||||||| |||||||||||||||||| |||||||||| Sbjct: 983 ccccacgtcttgccccacgagttcttggctatccagtact 944
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 63.9 bits (32), Expect = 6e-07 Identities = 38/40 (95%) Strand = Plus / Plus Query: 222 ccccacgtctggccccacgagttcttggcgatccagtact 261 |||||||||| |||||||||||||||||| |||||||||| Sbjct: 12728727 ccccacgtcttgccccacgagttcttggctatccagtact 12728766 Score = 60.0 bits (30), Expect = 9e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 216 ttctggccccacgtctggccccacgagttcttggcgatccagtact 261 |||| ||||||||||| |||||||||||||||||| | |||||||| Sbjct: 6395235 ttctcgccccacgtcttgccccacgagttcttggccacccagtact 6395280 Score = 58.0 bits (29), Expect = 4e-05 Identities = 29/29 (100%) Strand = Plus / Minus Query: 233 gccccacgagttcttggcgatccagtact 261 ||||||||||||||||||||||||||||| Sbjct: 6400964 gccccacgagttcttggcgatccagtact 6400936 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 222 ccccacgtctggccccacgagttcttggcgatccagtact 261 |||||||||| ||||||||||||||||||| |||||||| Sbjct: 13826295 ccccacgtctttccccacgagttcttggcgacccagtact 13826256 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 233 gccccacgagttcttggcgatccagtactc 262 |||||||||||||||| ||||||||||||| Sbjct: 39495697 gccccacgagttcttgacgatccagtactc 39495668 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 236 ccacgagttcttggcgatccagtact 261 |||||||||||||||||||||||||| Sbjct: 13843214 ccacgagttcttggcgatccagtact 13843189 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 236 ccacgagttcttggcgatccagtact 261 |||||||||||||||||||||||||| Sbjct: 13821085 ccacgagttcttggcgatccagtact 13821110 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 236 ccacgagttcttggcgatccagtact 261 |||||||||||||||||||||||||| Sbjct: 12735936 ccacgagttcttggcgatccagtact 12735911 Score = 48.1 bits (24), Expect = 0.035 Identities = 36/40 (90%) Strand = Plus / Plus Query: 222 ccccacgtctggccccacgagttcttggcgatccagtact 261 |||||||||| ||||||||||||||||| | |||||||| Sbjct: 13830962 ccccacgtcttaccccacgagttcttggccagccagtact 13831001
>dbj|AP003143.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0489E06 Length = 140229 Score = 63.9 bits (32), Expect = 6e-07 Identities = 38/40 (95%) Strand = Plus / Plus Query: 222 ccccacgtctggccccacgagttcttggcgatccagtact 261 |||||||||| |||||||||||||||||| |||||||||| Sbjct: 9126 ccccacgtcttgccccacgagttcttggctatccagtact 9165 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 236 ccacgagttcttggcgatccagtact 261 |||||||||||||||||||||||||| Sbjct: 16335 ccacgagttcttggcgatccagtact 16310
>dbj|AP002869.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0554D10 Length = 158723 Score = 63.9 bits (32), Expect = 6e-07 Identities = 38/40 (95%) Strand = Plus / Plus Query: 222 ccccacgtctggccccacgagttcttggcgatccagtact 261 |||||||||| |||||||||||||||||| |||||||||| Sbjct: 95756 ccccacgtcttgccccacgagttcttggctatccagtact 95795 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 236 ccacgagttcttggcgatccagtact 261 |||||||||||||||||||||||||| Sbjct: 102965 ccacgagttcttggcgatccagtact 102940
>gb|U32430.1|TAU32430 Triticum aestivum thiol protease mRNA, complete cds Length = 1353 Score = 63.9 bits (32), Expect = 6e-07 Identities = 38/40 (95%) Strand = Plus / Minus Query: 222 ccccacgtctggccccacgagttcttggcgatccagtact 261 |||||| ||| ||||||||||||||||||||||||||||| Sbjct: 1052 ccccacttctcgccccacgagttcttggcgatccagtact 1013
>ref|NM_188465.1| Oryza sativa (japonica cultivar-group), Ozsa8160 predicted mRNA Length = 1050 Score = 60.0 bits (30), Expect = 9e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 216 ttctggccccacgtctggccccacgagttcttggcgatccagtact 261 |||| ||||||||||| |||||||||||||||||| | |||||||| Sbjct: 965 ttctcgccccacgtcttgccccacgagttcttggccacccagtact 920
>dbj|AP002861.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0665D10 Length = 134967 Score = 60.0 bits (30), Expect = 9e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 216 ttctggccccacgtctggccccacgagttcttggcgatccagtact 261 |||| ||||||||||| |||||||||||||||||| | |||||||| Sbjct: 17630 ttctcgccccacgtcttgccccacgagttcttggccacccagtact 17675 Score = 58.0 bits (29), Expect = 4e-05 Identities = 29/29 (100%) Strand = Plus / Minus Query: 233 gccccacgagttcttggcgatccagtact 261 ||||||||||||||||||||||||||||| Sbjct: 23359 gccccacgagttcttggcgatccagtact 23331
>dbj|AP001633.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0515G01 Length = 175072 Score = 60.0 bits (30), Expect = 9e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 216 ttctggccccacgtctggccccacgagttcttggcgatccagtact 261 |||| ||||||||||| |||||||||||||||||| | |||||||| Sbjct: 166301 ttctcgccccacgtcttgccccacgagttcttggccacccagtact 166346 Score = 58.0 bits (29), Expect = 4e-05 Identities = 29/29 (100%) Strand = Plus / Minus Query: 233 gccccacgagttcttggcgatccagtact 261 ||||||||||||||||||||||||||||| Sbjct: 172030 gccccacgagttcttggcgatccagtact 172002
>ref|NM_188466.1| Oryza sativa (japonica cultivar-group), Ozsa8161 predicted mRNA Length = 1101 Score = 58.0 bits (29), Expect = 4e-05 Identities = 29/29 (100%) Strand = Plus / Minus Query: 233 gccccacgagttcttggcgatccagtact 261 ||||||||||||||||||||||||||||| Sbjct: 999 gccccacgagttcttggcgatccagtact 971
>gb|AY253445.1| Triticum aestivum P9346A1-2-5-1 putative thiol protease mRNA, partial cds Length = 560 Score = 58.0 bits (29), Expect = 4e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 222 ccccacgtctggccccacgagttcttggcgatccagtactc 262 |||||| ||| ||||||||||||| |||||||||||||||| Sbjct: 429 ccccacttctcgccccacgagttcctggcgatccagtactc 389
>ref|NM_183998.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1029 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 222 ccccacgtctggccccacgagttcttggcgatccagtact 261 |||||||||| ||||||||||||||||||| |||||||| Sbjct: 938 ccccacgtctttccccacgagttcttggcgacccagtact 899
>dbj|AP003852.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0440D10 Length = 144340 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 222 ccccacgtctggccccacgagttcttggcgatccagtact 261 |||||||||| ||||||||||||||||||| |||||||| Sbjct: 63698 ccccacgtctttccccacgagttcttggcgacccagtact 63659 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 236 ccacgagttcttggcgatccagtact 261 |||||||||||||||||||||||||| Sbjct: 80617 ccacgagttcttggcgatccagtact 80592 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 236 ccacgagttcttggcgatccagtact 261 |||||||||||||||||||||||||| Sbjct: 58488 ccacgagttcttggcgatccagtact 58513 Score = 48.1 bits (24), Expect = 0.035 Identities = 36/40 (90%) Strand = Plus / Plus Query: 222 ccccacgtctggccccacgagttcttggcgatccagtact 261 |||||||||| ||||||||||||||||| | |||||||| Sbjct: 68365 ccccacgtcttaccccacgagttcttggccagccagtact 68404
>gb|AY110841.1| Zea mays CL908_1 mRNA sequence Length = 916 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 216 ttctggccccacgtctggccccacgagttcttggcgatccagta 259 |||| ||||||| ||| |||||||||||||||| |||||||||| Sbjct: 637 ttctcgccccacttctcgccccacgagttcttgacgatccagta 594
>gb|M95060.1|MZEORFA Zea mays putative thiol protease homolog mRNA, partial cds Length = 171 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 216 ttctggccccacgtctggccccacgagttcttggcgatccagta 259 |||| ||||||| ||| |||||||||||||||| |||||||||| Sbjct: 112 ttctcgccccacttctcgccccacgagttcttgacgatccagta 69
>ref|NM_184003.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1086 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 236 ccacgagttcttggcgatccagtact 261 |||||||||||||||||||||||||| Sbjct: 981 ccacgagttcttggcgatccagtact 956
>ref|NM_183997.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1086 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 236 ccacgagttcttggcgatccagtact 261 |||||||||||||||||||||||||| Sbjct: 981 ccacgagttcttggcgatccagtact 956
>ref|NM_183860.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1104 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 236 ccacgagttcttggcgatccagtact 261 |||||||||||||||||||||||||| Sbjct: 999 ccacgagttcttggcgatccagtact 974
>ref|XM_463580.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1116 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 233 gccccacgagttcttggcgatccagtactc 262 |||||||||||||||| ||||||||||||| Sbjct: 960 gccccacgagttcttgacgatccagtactc 931
>dbj|AP003380.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0497A05 Length = 130919 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 233 gccccacgagttcttggcgatccagtactc 262 |||||||||||||||| ||||||||||||| Sbjct: 50139 gccccacgagttcttgacgatccagtactc 50110
>dbj|AP006531.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1417F08 Length = 155536 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 233 gccccacgagttcttggcgatccagtactc 262 |||||||||||||||| ||||||||||||| Sbjct: 70711 gccccacgagttcttgacgatccagtactc 70682
>dbj|AP003764.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1051E10 Length = 207782 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 236 ccacgagttcttggcgatccagtact 261 |||||||||||||||||||||||||| Sbjct: 3516 ccacgagttcttggcgatccagtact 3491
>gb|AF099203.1|AF099203 Oryza sativa cysteine endopeptidase precursor (EP3A) gene, complete cds Length = 2588 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 233 gccccacgagttcttggcgatccagtactc 262 |||||||||||||||| ||||||||||||| Sbjct: 1924 gccccacgagttcttgacgatccagtactc 1895
>dbj|D76415.1| Rice seedling mRNA for cysteine proteinase, complete cds Length = 1429 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 233 gccccacgagttcttggcgatccagtactc 262 |||||||||||||||| ||||||||||||| Sbjct: 970 gccccacgagttcttgacgatccagtactc 941
>dbj|AB004819.1| Oryza sativa Rep1 gene for cysteine endopeptidase, complete cds Length = 2544 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 233 gccccacgagttcttggcgatccagtactc 262 |||||||||||||||| ||||||||||||| Sbjct: 1886 gccccacgagttcttgacgatccagtactc 1857
>gb|AC145324.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0026D03 map near S2137, complete sequence Length = 115141 Score = 50.1 bits (25), Expect = 0.009 Identities = 28/29 (96%) Strand = Plus / Minus Query: 233 gccccacgagttcttggcgatccagtact 261 |||||||||||||||| |||||||||||| Sbjct: 34062 gccccacgagttcttgacgatccagtact 34034
>emb|X80876.1|OSCYSPRO O.sativa mRNA for cysteine protease Length = 1440 Score = 50.1 bits (25), Expect = 0.009 Identities = 28/29 (96%) Strand = Plus / Minus Query: 233 gccccacgagttcttggcgatccagtact 261 |||||||||||||||| |||||||||||| Sbjct: 1074 gccccacgagttcttgacgatccagtact 1046
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 50.1 bits (25), Expect = 0.009 Identities = 28/29 (96%) Strand = Plus / Plus Query: 233 gccccacgagttcttggcgatccagtact 261 |||||||||||||||| |||||||||||| Sbjct: 8298338 gccccacgagttcttgacgatccagtact 8298366 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 367 agccgctcccgtcgatctggacgg 390 ||||||||| |||||||||||||| Sbjct: 7706990 agccgctccggtcgatctggacgg 7707013
>dbj|AK071495.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023099K03, full insert sequence Length = 1511 Score = 50.1 bits (25), Expect = 0.009 Identities = 28/29 (96%) Strand = Plus / Minus Query: 233 gccccacgagttcttggcgatccagtact 261 |||||||||||||||| |||||||||||| Sbjct: 1080 gccccacgagttcttgacgatccagtact 1052
>dbj|AB004648.1| Oryza sativa (japonica cultivar-group) RepA gene for cysteine endopeptidase, complete cds Length = 3836 Score = 50.1 bits (25), Expect = 0.009 Identities = 28/29 (96%) Strand = Plus / Minus Query: 233 gccccacgagttcttggcgatccagtact 261 |||||||||||||||| |||||||||||| Sbjct: 2596 gccccacgagttcttgacgatccagtact 2568
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 50.1 bits (25), Expect = 0.009 Identities = 28/29 (96%) Strand = Plus / Plus Query: 233 gccccacgagttcttggcgatccagtact 261 |||||||||||||||| |||||||||||| Sbjct: 8369101 gccccacgagttcttgacgatccagtact 8369129 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 367 agccgctcccgtcgatctggacgg 390 ||||||||| |||||||||||||| Sbjct: 7777077 agccgctccggtcgatctggacgg 7777100
>ref|NM_184000.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1026 Score = 48.1 bits (24), Expect = 0.035 Identities = 36/40 (90%) Strand = Plus / Minus Query: 222 ccccacgtctggccccacgagttcttggcgatccagtact 261 |||||||||| ||||||||||||||||| | |||||||| Sbjct: 935 ccccacgtcttaccccacgagttcttggccagccagtact 896
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 48.1 bits (24), Expect = 0.035 Identities = 24/24 (100%) Strand = Plus / Plus Query: 604 gcgagctgaacacacccgtgctgc 627 |||||||||||||||||||||||| Sbjct: 3667525 gcgagctgaacacacccgtgctgc 3667548
>gb|AY144442.1| Sorghum bicolor BAC 95A23/98N8.1 Rph region, partial sequence Length = 268433 Score = 48.1 bits (24), Expect = 0.035 Identities = 27/28 (96%) Strand = Plus / Minus Query: 234 ccccacgagttcttggcgatccagtact 261 ||||||||||||||| |||||||||||| Sbjct: 152882 ccccacgagttcttgacgatccagtact 152855
>dbj|AB091669.1| Pandalus borealis PbCys mRNA for crustapain, complete cds Length = 1242 Score = 48.1 bits (24), Expect = 0.035 Identities = 33/36 (91%) Strand = Plus / Minus Query: 234 ccccacgagttcttggcgatccagtactcttctccg 269 ||||||||||||||| |||||||||| ||| ||||| Sbjct: 890 ccccacgagttcttgacgatccagtaatctcctccg 855
>gb|AY109437.1| Zea mays CL903_-1 mRNA sequence Length = 1664 Score = 48.1 bits (24), Expect = 0.035 Identities = 27/28 (96%) Strand = Plus / Minus Query: 232 ggccccacgagttcttggcgatccagta 259 ||||||||||||||||| |||||||||| Sbjct: 1052 ggccccacgagttcttgacgatccagta 1025
>ref|XM_346301.2| PREDICTED: Rattus norvegicus similar to ankyrin repeat and SOCS box-containing protein 9 (LOC367785), mRNA Length = 1137 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Plus Query: 354 ttctgcagcacggagccgctccc 376 ||||||||||||||||||||||| Sbjct: 524 ttctgcagcacggagccgctccc 546
>gb|CP000127.1| Nitrosococcus oceani ATCC 19707, complete genome Length = 3481691 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 259 actcttctccggcgccggtgac 280 |||||||||||||||||||||| Sbjct: 386541 actcttctccggcgccggtgac 386562
>gb|AC109232.17| Mus musculus chromosome 7, clone RP23-423P21, complete sequence Length = 201262 Score = 44.1 bits (22), Expect = 0.55 Identities = 25/26 (96%) Strand = Plus / Plus Query: 24 ggtaccggtgacatcatcgtccacac 49 ||||||||||||||||||| |||||| Sbjct: 196434 ggtaccggtgacatcatcggccacac 196459
>gb|AC136740.10| Mus musculus chromosome 7, clone RP23-137A24, complete sequence Length = 219863 Score = 44.1 bits (22), Expect = 0.55 Identities = 25/26 (96%) Strand = Plus / Plus Query: 24 ggtaccggtgacatcatcgtccacac 49 ||||||||||||||||||| |||||| Sbjct: 69241 ggtaccggtgacatcatcggccacac 69266
>dbj|AK047578.1| Mus musculus 10 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:B930093B02 product:similar to HECT DOMAIN AND RLD 2 [Homo sapiens], full insert sequence Length = 3368 Score = 44.1 bits (22), Expect = 0.55 Identities = 25/26 (96%) Strand = Plus / Minus Query: 24 ggtaccggtgacatcatcgtccacac 49 ||||||||||||||||||| |||||| Sbjct: 2386 ggtaccggtgacatcatcggccacac 2361
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 44.1 bits (22), Expect = 0.55 Identities = 25/26 (96%) Strand = Plus / Plus Query: 150 ccgtacatggccatgccacacagccc 175 ||||||||||| |||||||||||||| Sbjct: 22154171 ccgtacatggcaatgccacacagccc 22154196 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 234 ccccacgagttcttggcgatccagtact 261 |||||||||||||| |||||||||||| Sbjct: 22126325 ccccacgagttcttaacgatccagtact 22126352 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 234 ccccacgagttcttggcgatccagtact 261 ||||||||||||||| ||||||||||| Sbjct: 22050555 ccccacgagttcttgatgatccagtact 22050582 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 234 ccccacgagttcttggcgatccagtact 261 |||||||||||||| |||||||||||| Sbjct: 18948275 ccccacgagttcttcacgatccagtact 18948302
>dbj|AP006170.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0042B15 Length = 157981 Score = 44.1 bits (22), Expect = 0.55 Identities = 25/26 (96%) Strand = Plus / Plus Query: 150 ccgtacatggccatgccacacagccc 175 ||||||||||| |||||||||||||| Sbjct: 75664 ccgtacatggcaatgccacacagccc 75689 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 234 ccccacgagttcttggcgatccagtact 261 |||||||||||||| |||||||||||| Sbjct: 47818 ccccacgagttcttaacgatccagtact 47845
>ref|XM_507329.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1150_A11.17 mRNA Length = 1437 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 233 gccccacgagttcttggcgatccagtact 261 ||||||||||||| || |||||||||||| Sbjct: 1041 gccccacgagttcctgacgatccagtact 1013
>ref|XM_483741.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1437 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 233 gccccacgagttcttggcgatccagtact 261 ||||||||||||| || |||||||||||| Sbjct: 1041 gccccacgagttcctgacgatccagtact 1013
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 404 gagcacggccagcgccagcgc 424 ||||||||||||||||||||| Sbjct: 2787899 gagcacggccagcgccagcgc 2787919
>gb|DQ079995.1| Drosophila simulans male accessory gland protein (CG4847) mRNA, partial cds Length = 1086 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 235 cccacgagttcttggcgatccagta 259 |||||||||||||| |||||||||| Sbjct: 997 cccacgagttcttgacgatccagta 973
>ref|XM_757119.1| Ustilago maydis 521 hypothetical protein (UM06065.1) partial mRNA Length = 2055 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 249 gcgatccagtactcttctccg 269 ||||||||||||||||||||| Sbjct: 551 gcgatccagtactcttctccg 531
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome Length = 4501104 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 458 gccggtgatcttgccgatgcg 478 ||||||||||||||||||||| Sbjct: 408098 gccggtgatcttgccgatgcg 408078
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 458 gccggtgatcttgccgatgcg 478 ||||||||||||||||||||| Sbjct: 3398019 gccggtgatcttgccgatgcg 3397999
>emb|BX640447.1| Bordetella bronchiseptica strain RB50, complete genome; segment 11/16 Length = 349442 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 458 gccggtgatcttgccgatgcg 478 ||||||||||||||||||||| Sbjct: 190291 gccggtgatcttgccgatgcg 190311
>emb|BX640442.1| Bordetella bronchiseptica strain RB50, complete genome; segment 6/16 Length = 349876 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 405 agcacggccagcgccagcgcg 425 ||||||||||||||||||||| Sbjct: 167286 agcacggccagcgccagcgcg 167306
>emb|BX640430.1| Bordetella parapertussis strain 12822, complete genome; segment 8/14 Length = 348014 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 405 agcacggccagcgccagcgcg 425 ||||||||||||||||||||| Sbjct: 79286 agcacggccagcgccagcgcg 79306
>emb|BX640428.1| Bordetella parapertussis strain 12822, complete genome; segment 6/14 Length = 348525 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 458 gccggtgatcttgccgatgcg 478 ||||||||||||||||||||| Sbjct: 47926 gccggtgatcttgccgatgcg 47906
>emb|BX640419.1| Bordetella pertussis strain Tohama I, complete genome; segment 9/12 Length = 349672 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 458 gccggtgatcttgccgatgcg 478 ||||||||||||||||||||| Sbjct: 59662 gccggtgatcttgccgatgcg 59682
>emb|AJ428571.1|AEV428571 Azoarcus evansii partial padR gene, padA gene, padB gene, padC gene, padD gene, padE gene, padF gene, padG gene, padH gene, padI gene, padJ gene, ORFA, ORFB and ORFC Length = 16922 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 458 gccggtgatcttgccgatgcg 478 ||||||||||||||||||||| Sbjct: 12165 gccggtgatcttgccgatgcg 12145
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 233 gccccacgagttcttggcgatccagtact 261 ||||||||||||| || |||||||||||| Sbjct: 27868939 gccccacgagttcctgacgatccagtact 27868911
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 411 gccagcgccagcgcgttctcg 431 ||||||||||||||||||||| Sbjct: 4247933 gccagcgccagcgcgttctcg 4247913
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 404 gagcacggccagcgccagcgc 424 ||||||||||||||||||||| Sbjct: 866198 gagcacggccagcgccagcgc 866178
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 410 ggccagcgccagcgcgttctcgttg 434 ||||||||||||||| ||||||||| Sbjct: 388858 ggccagcgccagcgccttctcgttg 388882
>dbj|AP003928.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1150_A11 Length = 142010 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 233 gccccacgagttcttggcgatccagtact 261 ||||||||||||| || |||||||||||| Sbjct: 77017 gccccacgagttcctgacgatccagtact 76989
>ref|XM_312033.2| Anopheles gambiae str. PEST ENSANGP00000022503 (ENSANGG00000016224), partial mRNA Length = 880 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 232 ggccccacgagttcttggcgatccagtac 260 ||||||||||||||||| |||||||||| Sbjct: 733 ggccccacgagttcttgatgatccagtac 705
>ref|XM_312034.2| Anopheles gambiae str. PEST ENSANGP00000018713 (ENSANGG00000016224), partial mRNA Length = 1636 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 232 ggccccacgagttcttggcgatccagtac 260 ||||||||||||||||| |||||||||| Sbjct: 1489 ggccccacgagttcttgatgatccagtac 1461
>dbj|AK105612.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-B06, full insert sequence Length = 1351 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 233 gccccacgagttcttggcgatccagtact 261 ||||||||||||| || |||||||||||| Sbjct: 955 gccccacgagttcctgacgatccagtact 927
>dbj|AK099308.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023144C09, full insert sequence Length = 1437 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 233 gccccacgagttcttggcgatccagtact 261 ||||||||||||| || |||||||||||| Sbjct: 1041 gccccacgagttcctgacgatccagtact 1013
>dbj|AK072235.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001J24, full insert sequence Length = 1437 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 233 gccccacgagttcttggcgatccagtact 261 ||||||||||||| || |||||||||||| Sbjct: 1041 gccccacgagttcctgacgatccagtact 1013
>ref|XM_528595.1| PREDICTED: Pan troglodytes similar to Olfactory receptor 13J1 (LOC473225), mRNA Length = 1014 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 355 tctgcagcacggagccgctc 374 |||||||||||||||||||| Sbjct: 68 tctgcagcacggagccgctc 87
>ref|XM_471773.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1146 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 233 gccccacgagttcttggcgatccagtac 260 |||||||||||||||| |||||||||| Sbjct: 1023 gccccacgagttcttgatgatccagtac 996
>gb|AC124151.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0019E05, complete sequence Length = 129021 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 tcttctccggcgccggtgac 280 |||||||||||||||||||| Sbjct: 44232 tcttctccggcgccggtgac 44251
>gb|BT016603.1| Zea mays clone Contig436 mRNA sequence Length = 1526 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 274 cggtgaccccgtagccgacc 293 |||||||||||||||||||| Sbjct: 1075 cggtgaccccgtagccgacc 1056
>gb|BT017224.1| Zea mays clone EL01N0302C04.c mRNA sequence Length = 617 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 274 cggtgaccccgtagccgacc 293 |||||||||||||||||||| Sbjct: 187 cggtgaccccgtagccgacc 168
>gb|AC138000.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0024M06, complete sequence Length = 51144 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 367 agccgctcccgtcgatctggacgg 390 ||||||||| |||||||||||||| Sbjct: 9277 agccgctccggtcgatctggacgg 9254
>gb|AC135459.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0004P24, complete sequence Length = 137721 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 367 agccgctcccgtcgatctggacgg 390 ||||||||| |||||||||||||| Sbjct: 109965 agccgctccggtcgatctggacgg 109942
>gb|AC137621.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0111O13, complete sequence Length = 126332 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 tcttctccggcgccggtgac 280 |||||||||||||||||||| Sbjct: 15822 tcttctccggcgccggtgac 15803
>gb|AC137616.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0069I13, complete sequence Length = 94252 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 tcttctccggcgccggtgac 280 |||||||||||||||||||| Sbjct: 52620 tcttctccggcgccggtgac 52601
>gb|AC147026.2| Mus musculus BAC clone RP23-249A22 from chromosome 19, complete sequence Length = 190038 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 tgatgcatcttattttaata 92 |||||||||||||||||||| Sbjct: 58266 tgatgcatcttattttaata 58285
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 tcttctccggcgccggtgac 280 |||||||||||||||||||| Sbjct: 23357720 tcttctccggcgccggtgac 23357739
>ref|XM_848249.1| PREDICTED: Canis familiaris similar to TSPY-like 5 (LOC610706), mRNA Length = 1071 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 403 tgagcacggccagcgccagc 422 |||||||||||||||||||| Sbjct: 948 tgagcacggccagcgccagc 929
>emb|AL591785.1|SME591785 Sinorhizobium meliloti 1021 complete chromosome; segment 4/12 Length = 286550 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 456 acgccggtgatcttgccgat 475 |||||||||||||||||||| Sbjct: 272680 acgccggtgatcttgccgat 272699
>gb|AC112272.4| Mus musculus BAC clone RP24-121N15 from 19, complete sequence Length = 155861 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 tgatgcatcttattttaata 92 |||||||||||||||||||| Sbjct: 79750 tgatgcatcttattttaata 79769
>ref|XM_536212.2| PREDICTED: Canis familiaris similar to Cathepsin H precursor (LOC479065), mRNA Length = 1206 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 232 ggccccacgagttcttggcgatccagta 259 |||||||||||||||| |||||||||| Sbjct: 820 ggccccacgagttcttcacgatccagta 793
>emb|X62163.1|LMLCPA L.mexicana LCPa mRNA for cysteine proteinase Length = 2355 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 233 gccccacgagttcttggcgatccagtac 260 ||||||||||||||| ||||||||||| Sbjct: 2163 gccccacgagttcttcacgatccagtac 2136
>emb|AL663007.2|OSJN00206 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0054B09, complete sequence Length = 146506 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 233 gccccacgagttcttggcgatccagtac 260 |||||||||||||||| |||||||||| Sbjct: 21955 gccccacgagttcttgatgatccagtac 21928
>emb|AL606667.5|OSJN00082 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0061C06, complete sequence Length = 160129 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 tcttctccggcgccggtgac 280 |||||||||||||||||||| Sbjct: 88205 tcttctccggcgccggtgac 88224
>emb|AL607000.3|OSJN00132 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0089B03, complete sequence Length = 130910 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 acatgacgggataagcaccg 152 |||||||||||||||||||| Sbjct: 130625 acatgacgggataagcaccg 130644
>emb|AJ420285.1|LIN420285 Leishmania infantum cpa gene for cysteine proteinase Length = 1665 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 233 gccccacgagttcttggcgatccagtac 260 ||||||||||||||| ||||||||||| Sbjct: 1026 gccccacgagttcttcacgatccagtac 999
>emb|AJ130942.1|LMA130942 Leishmania major (MRHO/IR/75/ER), amastigote cpa gene encoding cysteine proteinase A Length = 697 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 233 gccccacgagttcttggcgatccagtac 260 ||||||||||||||| ||||||||||| Sbjct: 562 gccccacgagttcttcacgatccagtac 535
>emb|CR857593.1| Pongo pygmaeus mRNA; cDNA DKFZp469H1115 (from clone DKFZp469H1115) Length = 4699 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 405 agcacggccagcgccagcgc 424 |||||||||||||||||||| Sbjct: 139 agcacggccagcgccagcgc 158
>dbj|AK125157.1| Homo sapiens cDNA FLJ43167 fis, clone FCBBF3004041 Length = 2595 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 405 agcacggccagcgccagcgc 424 |||||||||||||||||||| Sbjct: 171 agcacggccagcgccagcgc 190
>gb|AC079177.21| Homo sapiens Xp BAC RP11-147B14 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 155533 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 77 gcatcttattttaatagcacatta 100 |||| ||||||||||||||||||| Sbjct: 51108 gcattttattttaatagcacatta 51085
>gb|AC109592.3| Homo sapiens BAC clone RP11-750O22 from 4, complete sequence Length = 86314 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 attgatgcatcttattttaa 90 |||||||||||||||||||| Sbjct: 41944 attgatgcatcttattttaa 41963
>gb|AF309687.1|AF309687 Leishmania donovani cysteine protease gene, complete cds Length = 1062 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 233 gccccacgagttcttggcgatccagtac 260 ||||||||||||||| ||||||||||| Sbjct: 933 gccccacgagttcttcacgatccagtac 906
>gb|AF538038.1| Leishmania mexicana amazonensis cysteine proteinase (cys1) gene, complete cds Length = 1065 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 233 gccccacgagttcttggcgatccagtac 260 ||||||||||||||| ||||||||||| Sbjct: 936 gccccacgagttcttcacgatccagtac 909
>gb|AY141759.1| Leishmania mexicana amazonensis clone 2A1 cysteine proteinase mRNA, complete cds Length = 1568 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 233 gccccacgagttcttggcgatccagtac 260 ||||||||||||||| ||||||||||| Sbjct: 984 gccccacgagttcttcacgatccagtac 957
>gb|AY141758.1| Leishmania mexicana amazonensis clone 3A4 cysteine proteinase mRNA, complete cds Length = 2431 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 233 gccccacgagttcttggcgatccagtac 260 ||||||||||||||| ||||||||||| Sbjct: 1102 gccccacgagttcttcacgatccagtac 1075
>gb|AY028171.1| Leishmania donovani extra chromosome XC290, partial sequence Length = 44273 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 233 gccccacgagttcttggcgatccagtac 260 ||||||||||||||| ||||||||||| Sbjct: 27756 gccccacgagttcttcacgatccagtac 27729
>gb|AF004593.2|AF004593 Leishmania donovani chagasi promastigote-specific cysteine protease (ldccys2) gene, complete cds Length = 2684 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 233 gccccacgagttcttggcgatccagtac 260 ||||||||||||||| ||||||||||| Sbjct: 1291 gccccacgagttcttcacgatccagtac 1264
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 acatgacgggataagcaccg 152 |||||||||||||||||||| Sbjct: 18662759 acatgacgggataagcaccg 18662778 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 233 gccccacgagttcttggcgatccagtac 260 |||||||||||||||| |||||||||| Sbjct: 14184189 gccccacgagttcttgatgatccagtac 14184162 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 tcttctccggcgccggtgac 280 |||||||||||||||||||| Sbjct: 6667249 tcttctccggcgccggtgac 6667268
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 tcttctccggcgccggtgac 280 |||||||||||||||||||| Sbjct: 2183391 tcttctccggcgccggtgac 2183372
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 tcttctccggcgccggtgac 280 |||||||||||||||||||| Sbjct: 23350748 tcttctccggcgccggtgac 23350767
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 tcttctccggcgccggtgac 280 |||||||||||||||||||| Sbjct: 30064165 tcttctccggcgccggtgac 30064146
>emb|AL662977.3|OSJN00176 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0072D21, complete sequence Length = 160456 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 acatgacgggataagcaccg 152 |||||||||||||||||||| Sbjct: 11897 acatgacgggataagcaccg 11916
>gb|AC016526.6|AC016526 Homo sapiens chromosome 14 clone RP11-361H10 map 14q24.3, complete sequence Length = 179984 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 cgtgcacatgcattgatgca 79 |||||||||||||||||||| Sbjct: 154171 cgtgcacatgcattgatgca 154152
>gb|AC097280.8| Oryza sativa chromosome 3 BAC OSJNBb0111B07 genomic sequence, complete sequence Length = 129647 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 tcttctccggcgccggtgac 280 |||||||||||||||||||| Sbjct: 40376 tcttctccggcgccggtgac 40395
>gb|AC018730.8| Homo sapiens BAC clone RP11-13J10 from 2, complete sequence Length = 154728 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 405 agcacggccagcgccagcgc 424 |||||||||||||||||||| Sbjct: 79442 agcacggccagcgccagcgc 79461
>dbj|AP005113.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0685G12 Length = 149155 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 tcttctccggcgccggtgac 280 |||||||||||||||||||| Sbjct: 43762 tcttctccggcgccggtgac 43743
>dbj|AP005396.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0635G10 Length = 146728 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 234 ccccacgagttcttggcgatccagtact 261 ||||||||||||||| ||||||||||| Sbjct: 92619 ccccacgagttcttgatgatccagtact 92646
>dbj|AK121305.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023111H18, full insert sequence Length = 1981 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 233 gccccacgagttcttggcgatccagtac 260 |||||||||||||||| |||||||||| Sbjct: 1591 gccccacgagttcttgatgatccagtac 1564
>dbj|AK108733.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-150-D05, full insert sequence Length = 904 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 234 ccccacgagttcttggcgatccagtact 261 ||||||||||||||| ||||||||||| Sbjct: 602 ccccacgagttcttgatgatccagtact 575
>dbj|AK099197.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023120K15, full insert sequence Length = 1290 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 234 ccccacgagttcttggcgatccagtact 261 |||||||||||||| |||||||||||| Sbjct: 1000 ccccacgagttcttcacgatccagtact 973
>dbj|AK072767.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023138P12, full insert sequence Length = 1322 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 234 ccccacgagttcttggcgatccagtact 261 |||||||||||||| |||||||||||| Sbjct: 1009 ccccacgagttcttcacgatccagtact 982
>gb|AY112469.1| Zea mays CL13598_-2 mRNA sequence Length = 606 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 274 cggtgaccccgtagccgacc 293 |||||||||||||||||||| Sbjct: 371 cggtgaccccgtagccgacc 390
>gb|AY110047.1| Zea mays CL878_1 mRNA sequence Length = 1403 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 238 acgagttcttggcgatccagtact 261 ||||||||||| |||||||||||| Sbjct: 1035 acgagttcttgacgatccagtact 1012
>gb|AY104208.1| Zea mays PCO086864 mRNA sequence Length = 941 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 404 gagcacggccagcgccagcg 423 |||||||||||||||||||| Sbjct: 224 gagcacggccagcgccagcg 205
>gb|AC138245.11| Mus musculus chromosome 17, clone RP23-75D10, complete sequence Length = 216692 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 113 accatgatataatactaactacat 136 ||||| |||||||||||||||||| Sbjct: 96723 accataatataatactaactacat 96700
>gb|AY944523.1| Unidentified soil organism clone XIX-33 from Australia environmental-sample Length = 696 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 602 cggcgagctgaacacacccgtgctgcag 629 ||||||||||| |||||| ||||||||| Sbjct: 113 cggcgagctgatcacaccggtgctgcag 86
>gb|L29168.1|LEICYSTPRO Leishmania pifanoi cysteine proteinase gene, complete cds Length = 1377 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 233 gccccacgagttcttggcgatccagtac 260 ||||||||||||||| ||||||||||| Sbjct: 1136 gccccacgagttcttcacgatccagtac 1109
>gb|L38514.1|TRBRANGB Trypanosoma rangeli (clone 3) rangelipain gene, 3' end of cds and 5' end of cds Length = 1898 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 233 gccccacgagttcttggcgatccagtac 260 |||||||||||||||| |||||||||| Sbjct: 138 gccccacgagttcttgatgatccagtac 111
>gb|L38513.1|TRBRANGA Trypanosoma rangeli (clone 2) rangelipain gene, 3' end of cds and 5' end of cds Length = 1905 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 233 gccccacgagttcttggcgatccagtac 260 |||||||||||||||| |||||||||| Sbjct: 138 gccccacgagttcttgatgatccagtac 111
>gb|L38512.1|TRBRANG Trypanosoma rangeli (clone 1) rangelipain gene, 3' end of cds and 5' end of cds Length = 1902 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 233 gccccacgagttcttggcgatccagtac 260 |||||||||||||||| |||||||||| Sbjct: 138 gccccacgagttcttgatgatccagtac 111 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,882,960 Number of Sequences: 3902068 Number of extensions: 3882960 Number of successful extensions: 74406 Number of sequences better than 10.0: 120 Number of HSP's better than 10.0 without gapping: 125 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 72805 Number of HSP's gapped (non-prelim): 1599 length of query: 630 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 607 effective length of database: 17,143,297,704 effective search space: 10405981706328 effective search space used: 10405981706328 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
