Clone Name | rbasd23b07 |
---|---|
Clone Library Name | barley_pub |
>AASS_ARATH (Q9SMZ4) Alpha-aminoadipic semialdehyde synthase (LKR/SDH)| (cAt-LKR/SDH) [Includes: Lysine ketoglutarate reductase (EC 1.5.1.8) (LKR); Saccharopine dehydrogenase (EC 1.5.1.9) (SDH) (cAt-SDH)] Length = 1064 Score = 118 bits (296), Expect = 7e-27 Identities = 57/101 (56%), Positives = 77/101 (76%) Frame = -3 Query: 469 AYXXXXXXMXXLXHXVEVEYPXGRPXEKHQATLLEFGKTENGRSTTAMALTVGVPAAIGA 290 AY M L H VEVE+ + EKH ATLLEFG +NG++TTAMA TVG+PAAIGA Sbjct: 964 AYSGNEQDMVLLHHEVEVEFLESKRIEKHTATLLEFGDIKNGQTTTAMAKTVGIPAAIGA 1023 Query: 289 LLLLQNKVQRKGVIRPLQPEIYIPALEILDASGIKLIERVQ 167 LLL+++K++ +GV+RPL+ E+Y+PAL+IL A GIKL+E+ + Sbjct: 1024 LLLIEDKIKTRGVLRPLEAEVYLPALDILQAYGIKLMEKAE 1064
>AASS_MOUSE (Q99K67) Alpha-aminoadipic semialdehyde synthase, mitochondrial| precursor (LKR/SDH) [Includes: Lysine ketoglutarate reductase (EC 1.5.1.8) (LOR) (LKR); Saccharopine dehydrogenase (EC 1.5.1.9) (SDH)] Length = 926 Score = 48.9 bits (115), Expect = 7e-06 Identities = 33/94 (35%), Positives = 48/94 (51%) Frame = -3 Query: 469 AYXXXXXXMXXLXHXVEVEYPXGRPXEKHQATLLEFGKTENGRSTTAMALTVGVPAAIGA 290 +Y M + + +P G E L+ +G NG S AMA TVG+P A+ A Sbjct: 827 SYGPEEKDMIVMRDSFGIRHPSGH-LENKTIDLVVYGDF-NGFS--AMAKTVGLPTAMAA 882 Query: 289 LLLLQNKVQRKGVIRPLQPEIYIPALEILDASGI 188 +LL +++ KG++ P EIY P LE + A GI Sbjct: 883 KMLLDGEIEAKGLMGPFTKEIYGPILERIKAEGI 916
>AASS_HUMAN (Q9UDR5) Alpha-aminoadipic semialdehyde synthase, mitochondrial| precursor (LKR/SDH) [Includes: Lysine ketoglutarate reductase (EC 1.5.1.8) (LOR) (LKR); Saccharopine dehydrogenase (EC 1.5.1.9) (SDH)] Length = 926 Score = 48.1 bits (113), Expect = 1e-05 Identities = 33/94 (35%), Positives = 47/94 (50%) Frame = -3 Query: 469 AYXXXXXXMXXLXHXVEVEYPXGRPXEKHQATLLEFGKTENGRSTTAMALTVGVPAAIGA 290 +Y M + + +P G E L+ +G NG S AMA TVG+P A+ A Sbjct: 827 SYGPEEKDMIVMRDSFGIRHPSGH-LEHKTIDLVAYGDI-NGFS--AMAKTVGLPTAMAA 882 Query: 289 LLLLQNKVQRKGVIRPLQPEIYIPALEILDASGI 188 +LL ++ KG++ P EIY P LE + A GI Sbjct: 883 KMLLDGEIGAKGLMGPFSKEIYGPILERIKAEGI 916
>LYS9_YEAST (P38999) Saccharopine dehydrogenase [NADP+, L-glutamate-forming]| (EC 1.5.1.10) (Saccharopine reductase) Length = 446 Score = 47.4 bits (111), Expect = 2e-05 Identities = 33/99 (33%), Positives = 47/99 (47%), Gaps = 1/99 (1%) Frame = -3 Query: 466 YXXXXXXMXXLXHXVEVEYPXGRPXEKHQATLLEFGKTENGRSTTAMALTVGVPAAIGAL 287 Y M L H +E+ G E +TL+++GK S MA TVG P AI Sbjct: 349 YEDNERDMVVLQHKFGIEWADGT-TETRTSTLVDYGKVGGYSS---MAATVGYPVAIATK 404 Query: 286 LLLQNKVQRKGVIRPLQPEIYIPAL-EILDASGIKLIER 173 +L ++ G++ P PEI P + E+ D GI L E+ Sbjct: 405 FVLDGTIKGPGLLAPYSPEINDPIMKELKDKYGIYLKEK 443
>LYS9_MAGGR (Q9P4R4) Saccharopine dehydrogenase [NADP+, L-glutamate-forming]| (EC 1.5.1.10) (Saccharopine reductase) Length = 450 Score = 44.3 bits (103), Expect = 2e-04 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 1/90 (1%) Frame = -3 Query: 436 LXHXVEVEYPXGRPXEKHQATLLEFGKTENGRSTTAMALTVGVPAAIGALLLLQNKVQRK 257 L H E+E G E ++L E+G +AMA VGVP A+ +L + + Sbjct: 360 LQHKFEIENKDGS-RETRTSSLCEYGAPIGSGGYSAMAKFVGVPCAVAVKFVLDGTISDR 418 Query: 256 GVIRPLQPEIYIPAL-EILDASGIKLIERV 170 GV+ P+ +I P + E+ + GI+ E+V Sbjct: 419 GVLAPMNSKINDPLMKELKEKYGIECKEKV 448
>CXCC1_MOUSE (Q9CWW7) CpG-binding protein (PHD finger and CXXC domain-containing| protein 1) (CXXC finger protein 1) Length = 660 Score = 33.9 bits (76), Expect = 0.22 Identities = 28/104 (26%), Positives = 49/104 (47%) Frame = -2 Query: 359 KDRERQVNHRHGPHRRGTGSDRSPALAPEQGSEERRDPASATGDLHPCAGDLGCVGHQAD 180 KD + ++ +RH R GS+R+ + ++G +R PAS +L AG VG Sbjct: 76 KDPKLEIRYRHKKCRERDGSERAGSEPRDEGGGRKR-PAS-DPELQRRAGSGTGVGAMLA 133 Query: 179 RESADLRMSAWDEIMRVHRVYIYMLLQQRQRVNKMMILVCCKCK 48 R SA S+ ++ + + QQ+Q+ K +C +C+ Sbjct: 134 RGSASPHKSSPQPLVATPSQHHHQQQQQQQQQIKRSARMCGECE 177
>NKX23_MOUSE (P97334) Homeobox protein Nkx-2.3 (Homeobox protein NK-2 homolog C)| (Nkx2-C) (Homeobox protein NK-2 homolog 3) Length = 362 Score = 32.0 bits (71), Expect = 0.85 Identities = 14/30 (46%), Positives = 16/30 (53%) Frame = +2 Query: 290 GSYRCRYPDGEGHGGG*PAVLGLSELQQRC 379 GSY C YP G G GGG A + +Q C Sbjct: 286 GSYGCAYPTGGGGGGGGTASAATTAMQPAC 315
>GGPP6_ARATH (O22043) Geranylgeranyl pyrophosphate synthetase 6, mitochondrial| precursor (GGPP synthetase 6) (GGPS6) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10); Farnesyltranstransferase (EC 2.5.1.29)] Length = 336 Score = 31.2 bits (69), Expect = 1.4 Identities = 12/32 (37%), Positives = 19/32 (59%) Frame = -2 Query: 149 WDEIMRVHRVYIYMLLQQRQRVNKMMILVCCK 54 W+ ++ VH+ Y LL +RV M+ LV C+ Sbjct: 61 WEPVLEVHKAMRYTLLPGGKRVRPMLCLVACE 92
>PHNC1_HALMA (Q5V6B8) Phosphonates import ATP-binding protein phnC 1 (EC| 3.6.3.28) Length = 273 Score = 29.6 bits (65), Expect = 4.2 Identities = 26/64 (40%), Positives = 33/64 (51%) Frame = -3 Query: 379 ATLLEFGKTENGRSTTAMALTVGVPAAIGALLLLQNKVQRKGVIRPLQPEIYIPALEILD 200 ATL G+T R T AL+ + +GAL L +G I PL P+ PALE LD Sbjct: 86 ATLAYQGETLVDRRT---ALSNVLTGRLGALSWL------RGFIEPLLPQHPEPALERLD 136 Query: 199 ASGI 188 A G+ Sbjct: 137 AVGL 140
>SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) Length = 699 Score = 29.6 bits (65), Expect = 4.2 Identities = 14/29 (48%), Positives = 16/29 (55%) Frame = -1 Query: 414 STPXGDPPRSTKQRCWSSERPRTAGQPPP 328 ST G PP ST S+ P+T G PPP Sbjct: 153 STAPGPPPPSTPSSGVSTTPPQTGGPPPP 181
>INO80_GIBZE (Q4IL82) Putative DNA helicase INO80 (EC 3.6.1.-)| Length = 1904 Score = 24.6 bits (52), Expect(2) = 4.9 Identities = 13/40 (32%), Positives = 15/40 (37%) Frame = -2 Query: 305 GSDRSPALAPEQGSEERRDPASATGDLHPCAGDLGCVGHQ 186 G +PAL P G P S+ LH G HQ Sbjct: 133 GGPVAPALPPPVGINSSSSPGSSAAGLHQRHHQPGAPAHQ 172 Score = 23.1 bits (48), Expect(2) = 4.9 Identities = 8/21 (38%), Positives = 14/21 (66%) Frame = -1 Query: 369 WSSERPRTAGQPPPWPSPSGY 307 +S P+ +PPP+ SP+G+ Sbjct: 76 FSLRSPKPEYRPPPFSSPNGH 96
>FAS1_YARLI (P34229) Fatty acid synthase beta subunit (EC 2.3.1.86) [Includes:| 3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.61); Enoyl-[acyl-carrier-protein] reductase [NADH] (EC 1.3.1.9); [Acyl-carrier-protein] acetyltransferase (EC 2. Length = 2086 Score = 29.3 bits (64), Expect = 5.5 Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 5/88 (5%) Frame = -3 Query: 424 VEVEYPXGRPXEKHQATLLEFGKTENGRSTTAMALTVGVPAAIGALLLLQNKVQRKGVIR 245 VE+E+P ++ + T++ + NG+ T + L G I L+ V R V Sbjct: 1204 VEIEHP-----DEPENTVISAFEPINGKVTKVLELRKGAGDVISLQLIEARGVDRVPVAL 1258 Query: 244 PL----QPEI-YIPALEILDASGIKLIE 176 PL QP+I Y P +E++ ++ E Sbjct: 1259 PLEFKYQPQIGYAPIVEVMTDRNTRIKE 1286
>RIMS1_RAT (Q9JIR4) Regulating synaptic membrane exocytosis protein 1| (Rab3-interacting molecule 1) (RIM 1) Length = 1615 Score = 29.3 bits (64), Expect = 5.5 Identities = 12/33 (36%), Positives = 18/33 (54%) Frame = -1 Query: 414 STPXGDPPRSTKQRCWSSERPRTAGQPPPWPSP 316 +T PP S + R +++ P G PPP P+P Sbjct: 438 ATARVSPPESPRARAAAAQPPTEHGPPPPRPAP 470
>ROBO2_MOUSE (Q7TPD3) Roundabout homolog 2 precursor| Length = 1470 Score = 29.3 bits (64), Expect = 5.5 Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 6/69 (8%) Frame = -2 Query: 350 ERQVNHRHGPHRRGTGSDRS------PALAPEQGSEERRDPASATGDLHPCAGDLGCVGH 189 ERQ R PH++G GS+ S P+ P G +S+ G P D+ H Sbjct: 1389 ERQEETRKAPHKQGVGSEESLVPYSKPSF-PSPGGHSSSGTSSSKGSTGPRKADVLRGSH 1447 Query: 188 QADRESADL 162 Q R + DL Sbjct: 1448 Q--RNANDL 1454
>DEND_RAT (P50617) Dendrin| Length = 653 Score = 28.9 bits (63), Expect = 7.2 Identities = 24/73 (32%), Positives = 27/73 (36%), Gaps = 1/73 (1%) Frame = +1 Query: 193 PTHPRSPAQGCRSPVAEAGSRLSSEPCSGARAGLLSLPVPRR-*GPWRWLTCRSRSFRTP 369 PTHP SP P A C+G+ G + VPRR G W RTP Sbjct: 507 PTHPGSPEHSTLGPAAPG--------CAGSVKGPEAAGVPRRAGGGWA---------RTP 549 Query: 370 AALLGASRXVARR 408 GA R R Sbjct: 550 GPYAGALREAVSR 562
>TOM40_RAT (Q75Q40) Probable mitochondrial import receptor subunit TOM40| homolog (Translocase of outer membrane 40 kDa subunit homolog) (38 kDa mitochondrial outer membrane protein) (OM38) Length = 361 Score = 28.9 bits (63), Expect = 7.2 Identities = 15/36 (41%), Positives = 16/36 (44%) Frame = -1 Query: 414 STPXGDPPRSTKQRCWSSERPRTAGQPPPWPSPSGY 307 S P G PP T P G PPP PSP G+ Sbjct: 9 SPPAGPPPPPT---------PSLVGLPPPPPSPPGF 35
>ZIC5_HUMAN (Q96T25) Zinc finger protein ZIC 5 (Zinc finger protein of the| cerebellum 5) Length = 639 Score = 28.9 bits (63), Expect = 7.2 Identities = 12/33 (36%), Positives = 15/33 (45%) Frame = +1 Query: 193 PTHPRSPAQGCRSPVAEAGSRLSSEPCSGARAG 291 P HP +PA R+ A S PC G +G Sbjct: 88 PAHPEAPAAAARAAALVAHPGAGSYPCGGGSSG 120
>MAGI1_MOUSE (Q6RHR9) Membrane-associated guanylate kinase, WW and PDZ| domain-containing protein 1 (BAI1-associated protein 1) (BAP-1) (Membrane-associated guanylate kinase inverted 1) (MAGI-1) Length = 1471 Score = 28.9 bits (63), Expect = 7.2 Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 8/93 (8%) Frame = -2 Query: 404 RATXREAPSNAAGVRKDRERQVNHRHGPHRR--------GTGSDRSPALAPEQGSEERRD 249 R+ R S+ + R+ ER ++ R P RR +DR A +PE+ E D Sbjct: 1366 RSPTRRKDSSPSRRRRSLERLLDQRRSPERRRGGSPERRAKSTDRRRARSPERRRERSLD 1425 Query: 248 PASATGDLHPCAGDLGCVGHQADRESADLRMSA 150 + VGH+ +RE A L++ A Sbjct: 1426 KRNRDDK----------VGHR-EREEAGLKLEA 1447
>SNUT3_XENLA (Q6GLZ8) U4/U6.U5 tri-snRNP-associated protein 3| Length = 158 Score = 28.9 bits (63), Expect = 7.2 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 7/65 (10%) Frame = -2 Query: 404 RATXREAPSNAAGVRKDRERQVNHRHGPHRRGTGSDR-------SPALAPEQGSEERRDP 246 R+ RE + RER+ + PHRR + S R SP+ ++ +++++P Sbjct: 19 RSASRERERRRRERSRSRERRRSRSRSPHRRRSRSPRRHRSSSISPSRLKDRRDDDKKEP 78 Query: 245 ASATG 231 + G Sbjct: 79 KESKG 83
>ESPL1_MOUSE (P60330) Separin (EC 3.4.22.49) (Separase) (Caspase-like protein| ESPL1) (Extra spindle poles-like 1 protein) Length = 2118 Score = 28.9 bits (63), Expect = 7.2 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 8/55 (14%) Frame = -1 Query: 423 WRW------STPXGDPPRSTKQRCWSSERPRTAGQPPPW--PSPSGYRQR*EPCS 283 W W S P +P + +Q+C R R A PPP S G + PC+ Sbjct: 1287 WGWHPPLVKSLPVLEPAKIRRQKCSGRGRRRIASVPPPLHNSSQKGLEEEGPPCT 1341
>SRY_MUSSI (Q62565) Sex-determining region Y protein (Testis-determining| factor) Length = 311 Score = 28.5 bits (62), Expect = 9.4 Identities = 13/30 (43%), Positives = 17/30 (56%) Frame = -2 Query: 353 RERQVNHRHGPHRRGTGSDRSPALAPEQGS 264 RE+ N+++ PHRR S RS L P S Sbjct: 66 REKYPNYKYQPHRRAKVSQRSGILQPRVAS 95
>RIMB1_MOUSE (Q7TNF8) Peripheral-type benzodiazepine receptor-associated protein 1| (PRAX-1) (Peripheral benzodiazepine receptor-interacting protein) (PBR-IP) (RIM-binding protein 1) (RIM-BP1) Length = 1846 Score = 28.5 bits (62), Expect = 9.4 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%) Frame = -2 Query: 392 REAPSNAAGVRKDRERQVNHRHGPHRRGTGSDRS--PALAPEQGSEE 258 +E PS A + R + + R GP RRG RS LAP + +E Sbjct: 1563 KEPPSRATETGESRGQDNSGRRGPQRRGARVPRSGTTELAPPRSPQE 1609
>MURC_SYNPX (Q7UA71) UDP-N-acetylmuramate--L-alanine ligase (EC 6.3.2.8)| (UDP-N-acetylmuramoyl-L-alanine synthetase) Length = 467 Score = 28.5 bits (62), Expect = 9.4 Identities = 16/46 (34%), Positives = 20/46 (43%) Frame = -2 Query: 326 GPHRRGTGSDRSPALAPEQGSEERRDPASATGDLHPCAGDLGCVGH 189 G H + T S + L E G DP + G + PC G G GH Sbjct: 121 GSHGKTTTSTLTTTLLMEAGE----DPTAIIGGIVPCLGSNGHAGH 162
>CNKR2_HUMAN (Q8WXI2) Connector enhancer of kinase suppressor of ras 2| (Connector enhancer of KSR2) (CNK2) Length = 1034 Score = 28.5 bits (62), Expect = 9.4 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%) Frame = +1 Query: 196 THPRSPAQGCRSPVAEA-GSRLSSEPCSGARA 288 T+PR P+ C SP EA SRLSS S +++ Sbjct: 709 TYPRPPSMSCASPYVEAKHSRLSSTETSQSQS 740
>ACE_THETS (Q6Q4G4) Angiotensin-converting enzyme precursor (EC 3.4.15.1)| (Dipeptidyl carboxypeptidase I) (Kininase II) (TtACE) Length = 616 Score = 28.5 bits (62), Expect = 9.4 Identities = 12/33 (36%), Positives = 14/33 (42%) Frame = -1 Query: 426 KWRWSTPXGDPPRSTKQRCWSSERPRTAGQPPP 328 +WRW GD PR W R + G PP Sbjct: 459 QWRWDVFSGDTPRPKYNSKWWHNRCKYQGVYPP 491
>AFSK_STRCO (P54741) Serine/threonine protein kinase afsK (EC 2.7.11.1)| Length = 799 Score = 28.5 bits (62), Expect = 9.4 Identities = 15/45 (33%), Positives = 17/45 (37%) Frame = -1 Query: 396 PPRSTKQRCWSSERPRTAGQPPPWPSPSGYRQR*EPCSCSRTRFR 262 PP S WS RP G P P+P+ P RFR Sbjct: 388 PPESALAASWSRPRPGVNGADPAVPAPAPAPPEASPAGWRPWRFR 432
>CNKR2_RAT (Q9Z1T4) Connector enhancer of kinase suppressor of ras 2| (Connector enhancer of KSR2) (CNK2) (Membrane-associated guanylate kinase-interacting protein) (MAGUIN) Length = 1032 Score = 28.5 bits (62), Expect = 9.4 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%) Frame = +1 Query: 196 THPRSPAQGCRSPVAEA-GSRLSSEPCSGARA 288 T+PR P+ C SP EA SRLSS S +++ Sbjct: 709 TYPRPPSMSCASPYVEAKHSRLSSTETSQSQS 740
>CNKR2_MOUSE (Q80YA9) Connector enhancer of kinase suppressor of ras 2| (Connector enhancer of KSR2) (CNK2) Length = 1032 Score = 28.5 bits (62), Expect = 9.4 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%) Frame = +1 Query: 196 THPRSPAQGCRSPVAEA-GSRLSSEPCSGARA 288 T+PR P+ C SP EA SRLSS S +++ Sbjct: 709 TYPRPPSMSCASPYVEAKHSRLSSTETSQSQS 740
>SRY_MUSSP (Q62563) Sex-determining region Y protein (Testis-determining| factor) Length = 355 Score = 28.5 bits (62), Expect = 9.4 Identities = 13/30 (43%), Positives = 17/30 (56%) Frame = -2 Query: 353 RERQVNHRHGPHRRGTGSDRSPALAPEQGS 264 RE+ N+++ PHRR S RS L P S Sbjct: 66 REKYPNYKYQPHRRAKVSQRSGILQPRVAS 95
>PTH_SILPO (Q5LV91) Peptidyl-tRNA hydrolase (EC 3.1.1.29) (PTH)| Length = 239 Score = 28.5 bits (62), Expect = 9.4 Identities = 22/63 (34%), Positives = 24/63 (38%), Gaps = 3/63 (4%) Frame = -2 Query: 404 RATXREAPSNAAGVRKDRERQVNHRHGPHRRGTGSDRSPALAPEQGSE---ERRDPASAT 234 R AP AAG V R P R TG+ R PA P + E PA AT Sbjct: 162 RGVSEGAPHLAAGDGARFMNSVALRTAPPRPSTGTGRPPAKTPARAEEPPAPAASPAPAT 221 Query: 233 GDL 225 L Sbjct: 222 APL 224
>CWC21_ASPFU (Q4WDD0) Pre-mRNA-splicing factor cwc21| Length = 217 Score = 28.5 bits (62), Expect = 9.4 Identities = 14/35 (40%), Positives = 18/35 (51%) Frame = -1 Query: 414 STPXGDPPRSTKQRCWSSERPRTAGQPPPWPSPSG 310 STP G QR ++ +PR AG P+P SG Sbjct: 8 STPRGSGTSGYVQRNYAFMKPRNAGYGAPYPPVSG 42
>UT1_MOUSE (Q8VHL0) Urea transporter, erythrocyte (Urea transporter B) (UT-B)| Length = 384 Score = 28.5 bits (62), Expect = 9.4 Identities = 17/52 (32%), Positives = 24/52 (46%) Frame = +3 Query: 228 ISGCRGRITPFL*TLFWSKSRAPIAAGTPTVRAMAVVDLPFSVFPNSSSVAW 383 + GC G + L L S+ R+ IAAG A +V + +VF N W Sbjct: 89 LCGCVGTVVSTLTALLLSQDRSAIAAGLQGYNA-TLVGILMAVFSNKGDYFW 139
>NUMB1_CAEEL (Q9XTY6) Numb-related protein 1 (Protein kinase C adapter 1) (CKA1)| Length = 593 Score = 28.5 bits (62), Expect = 9.4 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 8/55 (14%) Frame = -1 Query: 414 STPXGDPPRSTKQRCWSSERPRTAGQPPPWP--------SPSGYRQR*EPCSCSR 274 ++P DPP ++ P A PPP P SPS Y+Q+ + + +R Sbjct: 498 TSPSSDPPSTSSYSVLPKSGPPPAHAPPPLPVRQAVSNGSPSIYQQQLQQANSTR 552 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,675,551 Number of Sequences: 219361 Number of extensions: 1337804 Number of successful extensions: 5113 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 4693 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5079 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3188886965 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)