Clone Name	rbasd22m07
Clone Library Name	barley_pub

---

No.	Definition	Score (bits)	E Value
1	emb|AJ000233.1|HVJ000233 Hordeum vulgare mRNA for expressed sequ...	509	e-141
2	dbj|AK105135.1| Oryza sativa (japonica cultivar-group) cDNA clon...	174	2e-40
3	ref|XM_464028.1| Oryza sativa (japonica cultivar-group), mRNA	172	1e-39
4	emb|AJ535211.1|OSA535211 Oryza sativa mRNA for SMC3 protein	172	1e-39
5	ref|XM_464029.1| Oryza sativa (japonica cultivar-group), mRNA	135	2e-28
6	dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D...	121	3e-24
7	dbj|AP004997.2| Oryza sativa (japonica cultivar-group) genomic D...	121	3e-24
8	gb|AY104981.1| Zea mays PCO103085 mRNA sequence	119	1e-23
9	dbj|AP004799.3| Oryza sativa (japonica cultivar-group) genomic D...	88	4e-14
10	ref|NM_128275.3| Arabidopsis thaliana TTN7 (TITAN7); ATP binding...	56	2e-04
11	ref|NM_174295.1| Bos taurus chondroitin sulfate proteoglycan 6 (...	56	2e-04
12	emb|AJ504805.2|ATH504805 Arabidopsis thaliana mRNA for SMC3 protein	56	2e-04
13	gb|AY525642.1| Arabidopsis thaliana SMC3 (SMC3) mRNA, complete cds	56	2e-04
14	gb|AC007154.4| Arabidopsis thaliana chromosome 2 clone F20F1 map...	56	2e-04
15	dbj|AK221283.1| Arabidopsis thaliana mRNA for putative chromosom...	56	2e-04
16	tpe|BN000098.1|BTA000098 TPA: TPA_inf: Bos taurus mRNA for struc...	56	2e-04
17	gb|AF072713.1|AF072713 Bos taurus SMC3 protein (SMC3) mRNA, comp...	56	2e-04
18	ref|XM_503989.1| Yarrowia lipolytica CLIB122, YALI0E15620g predi...	52	0.002
19	emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB ...	52	0.002
20	emb|CR861241.1| Pongo pygmaeus mRNA; cDNA DKFZp459I103 (from clo...	48	0.039
21	ref|NG_005084.1| Homo sapiens CSPG6 pseudogene (LOC550644) on ch...	48	0.039
22	gb|AC019097.5| Homo sapiens BAC clone RP11-425I16 from 2, comple...	48	0.039
23	emb|AL354715.10| Human DNA sequence from clone RP11-110G12 on ch...	46	0.15
24	ref|XM_793479.1| PREDICTED: Strongylocentrotus purpuratus simila...	46	0.15
25	emb|AJ299714.1|MAR299714 Microtus arvalis partial mRNA for putat...	46	0.15
26	ref|NM_031583.1| Rattus norvegicus chondroitin sulfate proteogly...	46	0.15
27	gb|U82626.1|RNU82626 Rattus norvegicus basement membrane-associa...	46	0.15
28	gb|AF545591.1| Galdieria sulphuraria strain SAG 108.79 elongatio...	44	0.60
29	gb|AC022351.3| Drosophila melanogaster clone BACR29G15, complete...	42	2.4
30	gb|DQ213084.1| Taeniopygia guttata clone 0058P0010G02 autophagy ...	42	2.4
31	gb|AC069008.6| Homo sapiens BAC clone RP11-815N20 from 7, comple...	42	2.4
32	gb|BT023768.1| Drosophila melanogaster RE14758 full insert cDNA	42	2.4
33	gb|AC182472.3| Pan troglodytes BAC clone CH251-394C9 from chromo...	42	2.4
34	ref|NM_167525.1| Drosophila melanogaster Chromosome-associated p...	42	2.4
35	ref|NM_078650.2| Drosophila melanogaster Chromosome-associated p...	42	2.4
36	gb|AC011500.7| Homo sapiens chromosome 19 clone CTB-60E11, compl...	42	2.4
37	gb|AE003502.4| Drosophila melanogaster chromosome X, section 54 ...	42	2.4
38	gb|U30492.1|DMU30492 Drosophila melanogaster chromosome-associat...	42	2.4
39	gb|AC117203.4| Mus musculus BAC clone RP23-251N4 from chromosome...	40	9.4
40	ref|NM_133786.3| Mus musculus SMC4 structural maintenance of chr...	40	9.4
41	gb|AC119211.8| Mus musculus chromosome 7, clone RP24-191C15, com...	40	9.4
42	gb|AC123527.3| Oryza sativa (japonica cultivar-group) chromosome...	40	9.4
43	gb|AC161442.5| Mus musculus chromosome 5, clone RP23-384P12, com...	40	9.4
44	ref|NM_001032626.1| Takifugu rubripes SMC3 protein (smc3), mRNA	40	9.4
45	ref|XM_904099.2| PREDICTED: Mus musculus similar to SMC4 structu...	40	9.4
46	gb|BC005507.1| Mus musculus SMC4 structural maintenance of chrom...	40	9.4
47	gb|BC061481.1| Mus musculus SMC4 structural maintenance of chrom...	40	9.4
48	emb|AL117203.1|CEY48C3A Caenorhabditis elegans YAC Y48C3A, compl...	40	9.4
49	gb|AC122876.4| Mus musculus BAC clone RP23-113K14 from 3, comple...	40	9.4
50	gb|AC112701.6| Mus musculus BAC clone RP23-171A11 from 13, compl...	40	9.4
51	gb|AC119847.12| Mus musculus chromosome 3, clone RP23-46L5, comp...	40	9.4
52	ref|XM_775598.1| PREDICTED: Strongylocentrotus purpuratus simila...	40	9.4
53	ref|XM_502000.1| Yarrowia lipolytica CLIB122, YALI0C19129g predi...	40	9.4
54	emb|AL390879.20| Human DNA sequence from clone RP11-308D16 on ch...	40	9.4
55	gb|AC164097.2| Mus musculus BAC clone RP23-141F18 from chromosom...	40	9.4
56	emb|AJ534334.3|TRU534334 Takifugu rubripes mRNA for SMC3 protein	40	9.4
57	emb|AJ534940.2|MMU534940 Mus musculus mRNA for SMC4 protein	40	9.4
58	gb|AC099664.2| Homo sapiens chromosome 3 clone RP11-6B4, complet...	40	9.4
59	dbj|AB159668.1| Nemalionopsis shawii chloroplast tufA gene for e...	40	9.4
60	gb|AC004655.1| Homo sapiens Xp22-140-141 BAC GSHB-128G5 (Genome ...	40	9.4
61	ref|XM_683028.1| PREDICTED: Danio rerio similar to chromosome ad...	40	9.4
62	gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, comple...	40	9.4
63	gb|AY275833.1| Homo sapiens polymerase (DNA directed), alpha (PO...	40	9.4
64	gb|AC119193.9| Mus musculus chromosome 7, clone RP24-178L6, comp...	40	9.4
65	dbj|AK049487.1| Mus musculus 7 days embryo whole body cDNA, RIKE...	40	9.4
66	ref|NM_064413.4| Caenorhabditis elegans Member of AAA family bin...	40	9.4
67	gb|BC025542.1| Mus musculus SMC4 structural maintenance of chrom...	40	9.4
68	dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D...	40	9.4
69	gb|AC154705.2| Mus musculus BAC clone RP23-131F11 from chromosom...	40	9.4
70	gb|AF545594.1| Bangiopsis subsimplex elongation factor Tu (tufA)...	40	9.4
71	gb|BC062939.1| Mus musculus SMC4 structural maintenance of chrom...	40	9.4
72	gb|AF059715.1|AF059715 Caenorhabditis elegans cell survival CED-...	40	9.4
73	gb|AY108788.1| Zea mays PCO064665 mRNA sequence	40	9.4
74	gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome...	40	9.4
75	gb|U38804.1|PPU38804 Porphyra purpurea chloroplast, complete genome	40	9.4
76	emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB1...	40	9.4
77	gb|AC165159.2| Mus musculus BAC clone RP23-234N1 from chromosome...	40	9.4
78	gb|CP000038.1| Shigella sonnei Ss046, complete genome	40	9.4

---

>emb|AJ000233.1|HVJ000233 Hordeum vulgare mRNA for expressed sequence tag
          Length = 443

 Score =  509 bits (257), Expect = e-141
 Identities = 267/269 (99%), Gaps = 1/269 (0%)
 Strand = Plus / Minus

                                                                       
Query: 422 cgttgtgcgtctggtcgtgctcgatgaagtccatggcctgctccttggacaccacgttga 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 cgttgtgcgtctggtcgtgctcgatgaagtccatggcctgctccttggacaccacgttga 384

                                                                       
Query: 482 tgaagctcaccctgtt-cttgtgcgtcacgccatagatcttgtccgcgaccttcaggatc 540
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tgaagctcaccctgtttcttgtgcgtcacgccatagatcttgtccgcgaccttcaggatc 324

                                                                       
Query: 541 tccggcctgaatgtggtggctatgaactgggtgtccgccatgtcagccagacgtcgaacc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 323 tccggcctgaatgtggtggctatgaactgggtgtccgccatgtcagccagaagtcgaacc 264

                                                                       
Query: 601 acgctcccgacagccgttctgtactgaggatccagagcagcatcaatctcatcaaagagg 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 acgctcccgacagccgttctgtactgaggatccagagcagcatcaatctcatcaaagagg 204

                                        
Query: 661 tagaacggagctgggtcacatcgttggat 689
           |||||||||||||||||||||||||||||
Sbjct: 203 tagaacggagctgggtcacatcgttggat 175

---

>dbj|AK105135.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-102-A05, full
           insert sequence
          Length = 1101

 Score =  174 bits (88), Expect = 2e-40
 Identities = 223/268 (83%)
 Strand = Plus / Minus

                                                                       
Query: 413 ctcagctggcgttgtgcgtctggtcgtgctcgatgaagtccatggcctgctccttggaca 472
           ||||||| |||||||| |||||||| ||||| ||||||||||  || |||||||| ||||
Sbjct: 787 ctcagctagcgttgtgtgtctggtcatgctcaatgaagtccagagcttgctcctttgaca 728

                                                                       
Query: 473 ccacgttgatgaagctcaccctgttcttgtgcgtcacgccatagatcttgtccgcgacct 532
           |||| |||||| |||| |||||||||||||||||||| ||||||||||| || || || |
Sbjct: 727 ccacattgatgtagctaaccctgttcttgtgcgtcacaccatagatcttatcagcaactt 668

                                                                       
Query: 533 tcaggatctccggcctgaatgtggtggctatgaactgggtgtccgccatgtcagccagac 592
           |    || || || | |||||| || ||||| ||||| ||||| ||||||||||| ||||
Sbjct: 667 ttgcaatttctggtcggaatgtcgttgctataaactgagtgtcagccatgtcagctagac 608

                                                                       
Query: 593 gtcgaaccacgctcccgacagccgttctgtactgaggatccagagcagcatcaatctcat 652
           | || | ||   | |||||||| ||||||||||| ||||||||||||||||| |||||||
Sbjct: 607 ggcggatcatattgccgacagctgttctgtactgtggatccagagcagcatcgatctcat 548

                                       
Query: 653 caaagaggtagaacggagctgggtcaca 680
           |||| || ||||| || ||||| |||||
Sbjct: 547 caaacagatagaatggggctggatcaca 520

---

>ref|XM_464028.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3618

 Score =  172 bits (87), Expect = 1e-39
 Identities = 222/267 (83%)
 Strand = Plus / Minus

                                                                        
Query: 414  tcagctggcgttgtgcgtctggtcgtgctcgatgaagtccatggcctgctccttggacac 473
            |||||| |||||||| |||||||| ||||| ||||||||||  || |||||||| |||||
Sbjct: 3618 tcagctagcgttgtgtgtctggtcatgctcaatgaagtccagagcttgctcctttgacac 3559

                                                                        
Query: 474  cacgttgatgaagctcaccctgttcttgtgcgtcacgccatagatcttgtccgcgacctt 533
            ||| |||||| |||| |||||||||||||||||||| ||||||||||| || || || ||
Sbjct: 3558 cacattgatgtagctaaccctgttcttgtgcgtcacaccatagatcttatcagcaacttt 3499

                                                                        
Query: 534  caggatctccggcctgaatgtggtggctatgaactgggtgtccgccatgtcagccagacg 593
                || || || | |||||| || ||||| ||||| ||||| ||||||||||| |||||
Sbjct: 3498 tgcaatttctggtcggaatgtcgttgctataaactgagtgtcagccatgtcagctagacg 3439

                                                                        
Query: 594  tcgaaccacgctcccgacagccgttctgtactgaggatccagagcagcatcaatctcatc 653
             || | ||   | |||||||| ||||||||||| ||||||||||||||||| ||||||||
Sbjct: 3438 gcggatcatattgccgacagctgttctgtactgtggatccagagcagcatcgatctcatc 3379

                                       
Query: 654  aaagaggtagaacggagctgggtcaca 680
            ||| || ||||| || ||||| |||||
Sbjct: 3378 aaacagatagaatggggctggatcaca 3352

---

>emb|AJ535211.1|OSA535211 Oryza sativa mRNA for SMC3 protein
          Length = 3618

 Score =  172 bits (87), Expect = 1e-39
 Identities = 222/267 (83%)
 Strand = Plus / Minus

                                                                        
Query: 414  tcagctggcgttgtgcgtctggtcgtgctcgatgaagtccatggcctgctccttggacac 473
            |||||| |||||||| |||||||| ||||| ||||||||||  || |||||||| |||||
Sbjct: 3618 tcagctagcgttgtgtgtctggtcatgctcaatgaagtccagagcttgctcctttgacac 3559

                                                                        
Query: 474  cacgttgatgaagctcaccctgttcttgtgcgtcacgccatagatcttgtccgcgacctt 533
            ||| |||||| |||| |||||||||||||||||||| ||||||||||| || || || ||
Sbjct: 3558 cacattgatgtagctaaccctgttcttgtgcgtcacaccatagatcttatcagcaacttt 3499

                                                                        
Query: 534  caggatctccggcctgaatgtggtggctatgaactgggtgtccgccatgtcagccagacg 593
                || || || | |||||| || ||||| ||||| ||||| ||||||||||| |||||
Sbjct: 3498 tgcaatttctggtcggaatgtcgttgctataaactgagtgtcagccatgtcagctagacg 3439

                                                                        
Query: 594  tcgaaccacgctcccgacagccgttctgtactgaggatccagagcagcatcaatctcatc 653
             || |  |  || |||||||| ||||||||||| ||||||||||||||||| ||||||||
Sbjct: 3438 gcggatgatactgccgacagctgttctgtactgtggatccagagcagcatcgatctcatc 3379

                                       
Query: 654  aaagaggtagaacggagctgggtcaca 680
            ||| || ||||| || ||||| |||||
Sbjct: 3378 aaacagatagaatggggctggatcaca 3352

---

>ref|XM_464029.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3672

 Score =  135 bits (68), Expect = 2e-28
 Identities = 212/260 (81%)
 Strand = Plus / Minus

                                                                        
Query: 430  gtctggtcgtgctcgatgaagtccatggcctgctccttggacaccacgttgatgaagctc 489
            |||||||| ||| | ||||| ||||  ||||||||||| |||||||| |||||| |||||
Sbjct: 3656 gtctggtcatgcccaatgaaatccagagcctgctcctttgacaccacattgatgtagctc 3597

                                                                        
Query: 490  accctgttcttgtgcgtcacgccatagatcttgtccgcgaccttcaggatctccggcctg 549
            |||||||||||||  ||||| |||||||| || || || || || |  || ||||| |||
Sbjct: 3596 accctgttcttgtatgtcacaccatagattttatcagcaacttttacaatttccggtctg 3537

                                                                        
Query: 550  aatgtggtggctatgaactgggtgtccgccatgtcagccagacgtcgaaccacgctcccg 609
            ||||| || ||||| || || ||||| |||||||| |  ||||| || | ||   | || 
Sbjct: 3536 aatgttgtcgctataaattgagtgtcagccatgtccgaaagacggcggatcatattgcca 3477

                                                                        
Query: 610  acagccgttctgtactgaggatccagagcagcatcaatctcatcaaagaggtagaacgga 669
            ||||| ||||||||||| | |||||||||||||||||||||||| || || |||||||||
Sbjct: 3476 acagcagttctgtactgtgtatccagagcagcatcaatctcatcgaaaagatagaacgga 3417

                                
Query: 670  gctgggtcacatcgttggat 689
            ||||| ||||| || |||||
Sbjct: 3416 gctggatcacaacgctggat 3397

---

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  121 bits (61), Expect = 3e-24
 Identities = 151/181 (83%)
 Strand = Plus / Plus

                                                                           
Query: 413     ctcagctggcgttgtgcgtctggtcgtgctcgatgaagtccatggcctgctccttggaca 472
               ||||||| |||||||| |||||||| ||||| ||||||||||  || |||||||| ||||
Sbjct: 1754860 ctcagctagcgttgtgtgtctggtcatgctcaatgaagtccagagcttgctcctttgaca 1754919

                                                                           
Query: 473     ccacgttgatgaagctcaccctgttcttgtgcgtcacgccatagatcttgtccgcgacct 532
               |||| |||||| |||| |||||||||||||||||||| ||||||||||| || || || |
Sbjct: 1754920 ccacattgatgtagctaaccctgttcttgtgcgtcacaccatagatcttatcagcaactt 1754979

                                                                           
Query: 533     tcaggatctccggcctgaatgtggtggctatgaactgggtgtccgccatgtcagccagac 592
               |    || || || | |||||| || ||||| ||||| ||||| ||||||||||| ||||
Sbjct: 1754980 ttgcaatttctggtcggaatgtcgttgctataaactgagtgtcagccatgtcagctagac 1755039

                
Query: 593     g 593
               |
Sbjct: 1755040 g 1755040



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 71/80 (88%)
 Strand = Plus / Plus

                                                                           
Query: 610     acagccgttctgtactgaggatccagagcagcatcaatctcatcaaagaggtagaacgga 669
               ||||| ||||||||||| | |||||||||||||||||||||||| || || |||||||||
Sbjct: 1766373 acagcagttctgtactgtgtatccagagcagcatcaatctcatcgaaaagatagaacgga 1766432

                                   
Query: 670     gctgggtcacatcgttggat 689
               ||||| ||||| || |||||
Sbjct: 1766433 gctggatcacaacgctggat 1766452



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 127/155 (81%)
 Strand = Plus / Plus

                                                                           
Query: 430     gtctggtcgtgctcgatgaagtccatggcctgctccttggacaccacgttgatgaagctc 489
               |||||||| ||| | ||||| ||||  ||||||||||| |||||||| |||||| |||||
Sbjct: 1766087 gtctggtcatgcccaatgaaatccagagcctgctcctttgacaccacattgatgtagctc 1766146

                                                                           
Query: 490     accctgttcttgtgcgtcacgccatagatcttgtccgcgaccttcaggatctccggcctg 549
               |||||||||||||  ||||| |||||||| || || || || || |  || ||||| |||
Sbjct: 1766147 accctgttcttgtatgtcacaccatagattttatcagcaacttttacaatttccggtctg 1766206

                                                  
Query: 550     aatgtggtggctatgaactgggtgtccgccatgtc 584
               ||||| || ||||| || || ||||| ||||||||
Sbjct: 1766207 aatgttgtcgctataaattgagtgtcagccatgtc 1766241



 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 66/74 (89%)
 Strand = Plus / Plus

                                                                           
Query: 607     ccgacagccgttctgtactgaggatccagagcagcatcaatctcatcaaagaggtagaac 666
               |||||||| ||||||||||| ||||||||||||||||| ||||||||||| || ||||| 
Sbjct: 1755188 ccgacagctgttctgtactgtggatccagagcagcatcgatctcatcaaacagatagaat 1755247

                             
Query: 667     ggagctgggtcaca 680
               || ||||| |||||
Sbjct: 1755248 ggggctggatcaca 1755261

---

>dbj|AP004997.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0030G11
          Length = 143943

 Score =  121 bits (61), Expect = 3e-24
 Identities = 151/181 (83%)
 Strand = Plus / Plus

                                                                         
Query: 413   ctcagctggcgttgtgcgtctggtcgtgctcgatgaagtccatggcctgctccttggaca 472
             ||||||| |||||||| |||||||| ||||| ||||||||||  || |||||||| ||||
Sbjct: 72872 ctcagctagcgttgtgtgtctggtcatgctcaatgaagtccagagcttgctcctttgaca 72931

                                                                         
Query: 473   ccacgttgatgaagctcaccctgttcttgtgcgtcacgccatagatcttgtccgcgacct 532
             |||| |||||| |||| |||||||||||||||||||| ||||||||||| || || || |
Sbjct: 72932 ccacattgatgtagctaaccctgttcttgtgcgtcacaccatagatcttatcagcaactt 72991

                                                                         
Query: 533   tcaggatctccggcctgaatgtggtggctatgaactgggtgtccgccatgtcagccagac 592
             |    || || || | |||||| || ||||| ||||| ||||| ||||||||||| ||||
Sbjct: 72992 ttgcaatttctggtcggaatgtcgttgctataaactgagtgtcagccatgtcagctagac 73051

              
Query: 593   g 593
             |
Sbjct: 73052 g 73052



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 71/80 (88%)
 Strand = Plus / Plus

                                                                         
Query: 610   acagccgttctgtactgaggatccagagcagcatcaatctcatcaaagaggtagaacgga 669
             ||||| ||||||||||| | |||||||||||||||||||||||| || || |||||||||
Sbjct: 84385 acagcagttctgtactgtgtatccagagcagcatcaatctcatcgaaaagatagaacgga 84444

                                 
Query: 670   gctgggtcacatcgttggat 689
             ||||| ||||| || |||||
Sbjct: 84445 gctggatcacaacgctggat 84464



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 127/155 (81%)
 Strand = Plus / Plus

                                                                         
Query: 430   gtctggtcgtgctcgatgaagtccatggcctgctccttggacaccacgttgatgaagctc 489
             |||||||| ||| | ||||| ||||  ||||||||||| |||||||| |||||| |||||
Sbjct: 84099 gtctggtcatgcccaatgaaatccagagcctgctcctttgacaccacattgatgtagctc 84158

                                                                         
Query: 490   accctgttcttgtgcgtcacgccatagatcttgtccgcgaccttcaggatctccggcctg 549
             |||||||||||||  ||||| |||||||| || || || || || |  || ||||| |||
Sbjct: 84159 accctgttcttgtatgtcacaccatagattttatcagcaacttttacaatttccggtctg 84218

                                                
Query: 550   aatgtggtggctatgaactgggtgtccgccatgtc 584
             ||||| || ||||| || || ||||| ||||||||
Sbjct: 84219 aatgttgtcgctataaattgagtgtcagccatgtc 84253



 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 66/74 (89%)
 Strand = Plus / Plus

                                                                         
Query: 607   ccgacagccgttctgtactgaggatccagagcagcatcaatctcatcaaagaggtagaac 666
             |||||||| ||||||||||| ||||||||||||||||| ||||||||||| || ||||| 
Sbjct: 73200 ccgacagctgttctgtactgtggatccagagcagcatcgatctcatcaaacagatagaat 73259

                           
Query: 667   ggagctgggtcaca 680
             || ||||| |||||
Sbjct: 73260 ggggctggatcaca 73273

---

>gb|AY104981.1| Zea mays PCO103085 mRNA sequence
          Length = 636

 Score =  119 bits (60), Expect = 1e-23
 Identities = 195/240 (81%)
 Strand = Plus / Minus

                                                                       
Query: 411 gcctcagctggcgttgtgcgtctggtcgtgctcgatgaagtccatggcctgctccttgga 470
           ||||||||| || |||| |||||| ||  ||||||||||||||| ||||| |||||||||
Sbjct: 251 gcctcagctagcattgtacgtctgatcacgctcgatgaagtccagggcctcctccttgga 192

                                                                       
Query: 471 caccacgttgatgaagctcaccctgttcttgtgcgtcacgccatagatcttgtccgcgac 530
           |||||||| ||||  ||||||||| ||||||||  ||||| |||| ||||| || || ||
Sbjct: 191 caccacgtcgatgttgctcaccctattcttgtgtctcacggcatatatcttatcagccac 132

                                                                       
Query: 531 cttcaggatctccggcctgaatgtggtggctatgaactgggtgtccgccatgtcagccag 590
            ||    ||||| |||| ||||||||| || |||||||| ||||| ||||||||||| ||
Sbjct: 131 tttagcaatctctggccggaatgtggtcgcaatgaactgagtgtcagccatgtcagctag 72

                                                                       
Query: 591 acgtcgaaccacgctcccgacagccgttctgtactgaggatccagagcagcatcaatctc 650
           ||| || | ||   | || || || |||| ||| || ||||||||||||||||| |||||
Sbjct: 71  acggcggatcatatttccaactgctgttcggtattgtggatccagagcagcatcgatctc 12

---

>dbj|AP004799.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
            clone:P0585B01
          Length = 133231

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 71/80 (88%)
 Strand = Plus / Plus

                                                                        
Query: 610  acagccgttctgtactgaggatccagagcagcatcaatctcatcaaagaggtagaacgga 669
            ||||| ||||||||||| | |||||||||||||||||||||||| || || |||||||||
Sbjct: 3017 acagcagttctgtactgtgtatccagagcagcatcaatctcatcgaaaagatagaacgga 3076

                                
Query: 670  gctgggtcacatcgttggat 689
            ||||| ||||| || |||||
Sbjct: 3077 gctggatcacaacgctggat 3096



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 127/155 (81%)
 Strand = Plus / Plus

                                                                        
Query: 430  gtctggtcgtgctcgatgaagtccatggcctgctccttggacaccacgttgatgaagctc 489
            |||||||| ||| | ||||| ||||  ||||||||||| |||||||| |||||| |||||
Sbjct: 2731 gtctggtcatgcccaatgaaatccagagcctgctcctttgacaccacattgatgtagctc 2790

                                                                        
Query: 490  accctgttcttgtgcgtcacgccatagatcttgtccgcgaccttcaggatctccggcctg 549
            |||||||||||||  ||||| |||||||| || || || || || |  || ||||| |||
Sbjct: 2791 accctgttcttgtatgtcacaccatagattttatcagcaacttttacaatttccggtctg 2850

                                               
Query: 550  aatgtggtggctatgaactgggtgtccgccatgtc 584
            ||||| || ||||| || || ||||| ||||||||
Sbjct: 2851 aatgttgtcgctataaattgagtgtcagccatgtc 2885

---

>ref|NM_128275.3| Arabidopsis thaliana TTN7 (TITAN7); ATP binding AT2G27170 (TTN7)
            mRNA, complete cds
          Length = 3777

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 67/80 (83%)
 Strand = Plus / Minus

                                                                        
Query: 610  acagccgttctgtactgaggatccagagcagcatcaatctcatcaaagaggtagaacgga 669
            ||||| |||| |||||| ||||| || || ||||||||||||||||| || ||||| || 
Sbjct: 3584 acagcggttcggtactgtggatcaagtgctgcatcaatctcatcaaaaagatagaatggt 3525

                                
Query: 670  gctgggtcacatcgttggat 689
            || || |||||||| |||||
Sbjct: 3524 gcaggatcacatcgctggat 3505

---

>ref|NM_174295.1| Bos taurus chondroitin sulfate proteoglycan 6 (bamacan) (CSPG6), mRNA
          Length = 3657

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 61/72 (84%)
 Strand = Plus / Minus

                                                                        
Query: 610  acagccgttctgtactgaggatccagagcagcatcaatctcatcaaagaggtagaacgga 669
            |||||| |||||| ||||| |||||||||    |||||||||||||| | ||| || |||
Sbjct: 3473 acagcctttctgtgctgagcatccagagcctggtcaatctcatcaaacaagtaaaaagga 3414

                        
Query: 670  gctgggtcacat 681
            ||||||||||||
Sbjct: 3413 gctgggtcacat 3402

---

>emb|AJ504805.2|ATH504805 Arabidopsis thaliana mRNA for SMC3 protein
          Length = 3618

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 67/80 (83%)
 Strand = Plus / Minus

                                                                        
Query: 610  acagccgttctgtactgaggatccagagcagcatcaatctcatcaaagaggtagaacgga 669
            ||||| |||| |||||| ||||| || || ||||||||||||||||| || ||||| || 
Sbjct: 3425 acagcggttcggtactgtggatcaagtgctgcatcaatctcatcaaaaagatagaatggt 3366

                                
Query: 670  gctgggtcacatcgttggat 689
            || || |||||||| |||||
Sbjct: 3365 gcaggatcacatcgctggat 3346

---

>gb|AY525642.1| Arabidopsis thaliana SMC3 (SMC3) mRNA, complete cds
          Length = 3677

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 67/80 (83%)
 Strand = Plus / Minus

                                                                        
Query: 610  acagccgttctgtactgaggatccagagcagcatcaatctcatcaaagaggtagaacgga 669
            ||||| |||| |||||| ||||| || || ||||||||||||||||| || ||||| || 
Sbjct: 3460 acagcggttcggtactgtggatcaagtgctgcatcaatctcatcaaaaagatagaatggt 3401

                                
Query: 670  gctgggtcacatcgttggat 689
            || || |||||||| |||||
Sbjct: 3400 gcaggatcacatcgctggat 3381

---

>gb|AC007154.4| Arabidopsis thaliana chromosome 2 clone F20F1 map B68, complete
             sequence
          Length = 20190

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 67/80 (83%)
 Strand = Plus / Plus

                                                                         
Query: 610   acagccgttctgtactgaggatccagagcagcatcaatctcatcaaagaggtagaacgga 669
             ||||| |||| |||||| ||||| || || ||||||||||||||||| || ||||| || 
Sbjct: 12657 acagcggttcggtactgtggatcaagtgctgcatcaatctcatcaaaaagatagaatggt 12716

                                 
Query: 670   gctgggtcacatcgttggat 689
             || || |||||||| |||||
Sbjct: 12717 gcaggatcacatcgctggat 12736

---

>dbj|AK221283.1| Arabidopsis thaliana mRNA for putative chromosome associated protein,
            complete cds, clone: RAFL24-19-L04
          Length = 3977

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 67/80 (83%)
 Strand = Plus / Minus

                                                                        
Query: 610  acagccgttctgtactgaggatccagagcagcatcaatctcatcaaagaggtagaacgga 669
            ||||| |||| |||||| ||||| || || ||||||||||||||||| || ||||| || 
Sbjct: 3578 acagcggttcggtactgtggatcaagtgctgcatcaatctcatcaaaaagatagaatggt 3519

                                
Query: 670  gctgggtcacatcgttggat 689
            || || |||||||| |||||
Sbjct: 3518 gcaggatcacatcgctggat 3499

---

>tpe|BN000098.1|BTA000098 TPA: TPA_inf: Bos taurus mRNA for structural maintenance of
            chromosomes protein 3 (smc3 gene)
          Length = 3654

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 61/72 (84%)
 Strand = Plus / Minus

                                                                        
Query: 610  acagccgttctgtactgaggatccagagcagcatcaatctcatcaaagaggtagaacgga 669
            |||||| |||||| ||||| |||||||||    |||||||||||||| | ||| || |||
Sbjct: 3470 acagcctttctgtgctgagcatccagagcctggtcaatctcatcaaacaagtaaaaagga 3411

                        
Query: 670  gctgggtcacat 681
            ||||||||||||
Sbjct: 3410 gctgggtcacat 3399

---

>gb|AF072713.1|AF072713 Bos taurus SMC3 protein (SMC3) mRNA, complete cds
          Length = 3657

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 61/72 (84%)
 Strand = Plus / Minus

                                                                        
Query: 610  acagccgttctgtactgaggatccagagcagcatcaatctcatcaaagaggtagaacgga 669
            |||||| |||||| ||||| |||||||||    |||||||||||||| | ||| || |||
Sbjct: 3473 acagcctttctgtgctgagcatccagagcctggtcaatctcatcaaacaagtaaaaagga 3414

                        
Query: 670  gctgggtcacat 681
            ||||||||||||
Sbjct: 3413 gctgggtcacat 3402

---

>ref|XM_503989.1| Yarrowia lipolytica CLIB122, YALI0E15620g predicted mRNA
          Length = 3663

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                      
Query: 630  atccagagcagcatcaatctcatcaa 655
            ||||||||||||||||||||||||||
Sbjct: 3474 atccagagcagcatcaatctcatcaa 3449

---

>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica
          Length = 4224103

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                         
Query: 630     atccagagcagcatcaatctcatcaa 655
               ||||||||||||||||||||||||||
Sbjct: 1868480 atccagagcagcatcaatctcatcaa 1868505

---

>emb|CR861241.1| Pongo pygmaeus mRNA; cDNA DKFZp459I103 (from clone DKFZp459I103)
          Length = 4087

 Score = 48.1 bits (24), Expect = 0.039
 Identities = 60/72 (83%)
 Strand = Plus / Minus

                                                                        
Query: 610  acagccgttctgtactgaggatccagagcagcatcaatctcatcaaagaggtagaacgga 669
            |||||| |||||| ||||| |||||||||    |||||||||||||| | ||| || |||
Sbjct: 3556 acagcctttctgtgctgagcatccagagcctggtcaatctcatcaaacaagtaaaatgga 3497

                        
Query: 670  gctgggtcacat 681
            || |||||||||
Sbjct: 3496 gccgggtcacat 3485

---

>ref|NG_005084.1| Homo sapiens CSPG6 pseudogene (LOC550644) on chromosome 2
          Length = 1284

 Score = 48.1 bits (24), Expect = 0.039
 Identities = 60/72 (83%)
 Strand = Plus / Minus

                                                                       
Query: 610 acagccgttctgtactgaggatccagagcagcatcaatctcatcaaagaggtagaacgga 669
           |||||| |||||| ||||| |||||||||    |||||||||||||| | ||| || |||
Sbjct: 651 acagcctttctgtgctgagcatccagagcctggtcaatctcatcaaacaagtaaaatgga 592

                       
Query: 670 gctgggtcacat 681
           || |||||||||
Sbjct: 591 gccgggtcacat 580

---

>gb|AC019097.5| Homo sapiens BAC clone RP11-425I16 from 2, complete sequence
          Length = 186023

 Score = 48.1 bits (24), Expect = 0.039
 Identities = 60/72 (83%)
 Strand = Plus / Plus

                                                                         
Query: 610   acagccgttctgtactgaggatccagagcagcatcaatctcatcaaagaggtagaacgga 669
             |||||| |||||| ||||| |||||||||    |||||||||||||| | ||| || |||
Sbjct: 26585 acagcctttctgtgctgagcatccagagcctggtcaatctcatcaaacaagtaaaatgga 26644

                         
Query: 670   gctgggtcacat 681
             || |||||||||
Sbjct: 26645 gccgggtcacat 26656

---

>emb|AL354715.10| Human DNA sequence from clone RP11-110G12 on chromosome 13, complete
             sequence
          Length = 121019

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 183   taactaaatatacacagctacat 205
             |||||||||||||||||||||||
Sbjct: 89197 taactaaatatacacagctacat 89175

---

>ref|XM_793479.1| PREDICTED: Strongylocentrotus purpuratus similar to Structural
            maintenance of chromosome 3 (Chondroitin sulfate
            proteoglycan 6) (Chromosome-associated polypeptide)
            (hCAP) (Bamacan) (Basement membrane-associated
            chondroitin proteoglycan) (LOC594026), mRNA
          Length = 3797

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 646  atctcatcaaagaggtagaacggagctgggtcaca 680
            |||||||||||||||||||| || || ||||||||
Sbjct: 3332 atctcatcaaagaggtagaaaggggcggggtcaca 3298

---

>emb|AJ299714.1|MAR299714 Microtus arvalis partial mRNA for putative SMC3 protein (smc3 gene)
          Length = 223

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                  
Query: 643 tcaatctcatcaaagaggtagaacggagctgggtcacat 681
           |||||||||||||| | ||| |||||||| |||||||||
Sbjct: 173 tcaatctcatcaaacaagtaaaacggagcagggtcacat 135

---

>ref|NM_031583.1| Rattus norvegicus chondroitin sulfate proteoglycan 6 (Cspg6), mRNA
          Length = 4104

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 646  atctcatcaaagaggtagaacggagctgggtcaca 680
            ||||||||||| |||||||| ||||| ||||||||
Sbjct: 3523 atctcatcaaacaggtagaaaggagcagggtcaca 3489

---

>gb|U82626.1|RNU82626 Rattus norvegicus basement membrane-associated chondroitin
            proteoglycan Bamacan mRNA, complete cds
          Length = 4104

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 646  atctcatcaaagaggtagaacggagctgggtcaca 680
            ||||||||||| |||||||| ||||| ||||||||
Sbjct: 3523 atctcatcaaacaggtagaaaggagcagggtcaca 3489

---

>gb|AF545591.1| Galdieria sulphuraria strain SAG 108.79 elongation factor Tu (tufA)
           gene, partial cds; chloroplast gene for chloroplast
           product
          Length = 975

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 635 gagcagcatcaatctcatcaaa 656
           ||||||||||||||||||||||
Sbjct: 91  gagcagcatcaatctcatcaaa 70

---

>gb|AC022351.3| Drosophila melanogaster clone BACR29G15, complete sequence
          Length = 179396

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 646    atctcatcaaagaggtagaacggagctgg 674
              ||||||||||| |||||||| ||||||||
Sbjct: 105894 atctcatcaaataggtagaagggagctgg 105922

---

>gb|DQ213084.1| Taeniopygia guttata clone 0058P0010G02 autophagy 12-like mRNA,
           complete sequence
          Length = 890

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 53  ttttgcagtaatgcagtacaa 73
           |||||||||||||||||||||
Sbjct: 470 ttttgcagtaatgcagtacaa 450

---

>gb|AC069008.6| Homo sapiens BAC clone RP11-815N20 from 7, complete sequence
          Length = 90252

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 552  tgtggtggctatgaactgggt 572
            |||||||||||||||||||||
Sbjct: 9323 tgtggtggctatgaactgggt 9343

---

>gb|BT023768.1| Drosophila melanogaster RE14758 full insert cDNA
          Length = 4020

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 646  atctcatcaaagaggtagaacggagctgg 674
            ||||||||||| |||||||| ||||||||
Sbjct: 3446 atctcatcaaataggtagaagggagctgg 3418

---

>gb|AC182472.3| Pan troglodytes BAC clone CH251-394C9 from chromosome 19, complete
              sequence
          Length = 165954

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 184    aactaaatatacacagctacattaa 208
              |||| ||||||||||||||||||||
Sbjct: 102929 aactgaatatacacagctacattaa 102953

---

>ref|NM_167525.1| Drosophila melanogaster Chromosome-associated protein CG9802-RB,
            transcript variant B (Cap), mRNA
          Length = 4052

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 646  atctcatcaaagaggtagaacggagctgg 674
            ||||||||||| |||||||| ||||||||
Sbjct: 3494 atctcatcaaataggtagaagggagctgg 3466

---

>ref|NM_078650.2| Drosophila melanogaster Chromosome-associated protein CG9802-RA,
            transcript variant A (Cap), mRNA
          Length = 4004

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 646  atctcatcaaagaggtagaacggagctgg 674
            ||||||||||| |||||||| ||||||||
Sbjct: 3446 atctcatcaaataggtagaagggagctgg 3418

---

>gb|AC011500.7| Homo sapiens chromosome 19 clone CTB-60E11, complete sequence
          Length = 200430

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 184    aactaaatatacacagctacattaa 208
              |||| ||||||||||||||||||||
Sbjct: 134059 aactgaatatacacagctacattaa 134083

---

>gb|AE003502.4| Drosophila melanogaster chromosome X, section 54 of 74 of the complete
              sequence
          Length = 304712

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 646    atctcatcaaagaggtagaacggagctgg 674
              ||||||||||| |||||||| ||||||||
Sbjct: 256827 atctcatcaaataggtagaagggagctgg 256855

---

>gb|U30492.1|DMU30492 Drosophila melanogaster chromosome-associated protein (cap) mRNA,
            complete cds
          Length = 4711

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 646  atctcatcaaagaggtagaacggagctgg 674
            ||||||||||| |||||||| ||||||||
Sbjct: 4024 atctcatcaaataggtagaagggagctgg 3996

---

>gb|AC117203.4| Mus musculus BAC clone RP23-251N4 from chromosome 10, complete sequence
          Length = 231532

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 121    cttaaataagttttagcaat 140
              ||||||||||||||||||||
Sbjct: 123830 cttaaataagttttagcaat 123849

---

>ref|NM_133786.3| Mus musculus SMC4 structural maintenance of chromosomes 4-like 1
            (yeast) (Smc4l1), mRNA
          Length = 4101

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 630  atccagagcagcatcaatctcatc 653
            ||||||||| ||||||||||||||
Sbjct: 3796 atccagagctgcatcaatctcatc 3773

---

>gb|AC119211.8| Mus musculus chromosome 7, clone RP24-191C15, complete sequence
          Length = 172286

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                  
Query: 646    atctcatcaaagaggtagaacggagctgggtcacat 681
              ||||||||||| ||||| || ||||| |||||||||
Sbjct: 100242 atctcatcaaacaggtaaaaaggagcggggtcacat 100277

---

>gb|AC123527.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0068G15, complete sequence
          Length = 146175

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 435   gtcgtgctcgatgaagtcca 454
             ||||||||||||||||||||
Sbjct: 62082 gtcgtgctcgatgaagtcca 62101

---

>gb|AC161442.5| Mus musculus chromosome 5, clone RP23-384P12, complete sequence
          Length = 174557

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 551   atgtggtggctatgaactgggtgt 574
             |||||||||||||||| |||||||
Sbjct: 48820 atgtggtggctatgaagtgggtgt 48843

---

>ref|NM_001032626.1| Takifugu rubripes SMC3 protein (smc3), mRNA
          Length = 3654

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 646  atctcatcaaagaggtagaacggagctgggtcacat 681
            ||||||||||| ||||| || ||||| |||||||||
Sbjct: 3434 atctcatcaaacaggtaaaagggagccgggtcacat 3399

---

>ref|XM_904099.2| PREDICTED: Mus musculus similar to SMC4 structural maintenance of
           chromosomes 4-like 1 (LOC630556), mRNA
          Length = 850

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 630 atccagagcagcatcaatctcatc 653
           ||||||||| ||||||||||||||
Sbjct: 558 atccagagctgcatcaatctcatc 535

---

>gb|BC005507.1| Mus musculus SMC4 structural maintenance of chromosomes 4-like 1
           (yeast), mRNA (cDNA clone IMAGE:3491533), partial cds
          Length = 665

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 630 atccagagcagcatcaatctcatc 653
           ||||||||| ||||||||||||||
Sbjct: 366 atccagagctgcatcaatctcatc 343

---

>gb|BC061481.1| Mus musculus SMC4 structural maintenance of chromosomes 4-like 1
            (yeast), mRNA (cDNA clone MGC:70057 IMAGE:6512832),
            complete cds
          Length = 4097

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 630  atccagagcagcatcaatctcatc 653
            ||||||||| ||||||||||||||
Sbjct: 3771 atccagagctgcatcaatctcatc 3748

---

>emb|AL117203.1|CEY48C3A Caenorhabditis elegans YAC Y48C3A, complete sequence
          Length = 165027

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 639   agcatcaatctcatcaaaga 658
             ||||||||||||||||||||
Sbjct: 58447 agcatcaatctcatcaaaga 58466

---

>gb|AC122876.4| Mus musculus BAC clone RP23-113K14 from 3, complete sequence
          Length = 190123

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 630    atccagagcagcatcaatctcatc 653
              ||||||||| ||||||||||||||
Sbjct: 168721 atccagagctgcatcaatctcatc 168698

---

>gb|AC112701.6| Mus musculus BAC clone RP23-171A11 from 13, complete sequence
          Length = 184506

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 286   gctacaagaaacaaacagag 305
             ||||||||||||||||||||
Sbjct: 96314 gctacaagaaacaaacagag 96333

---

>gb|AC119847.12| Mus musculus chromosome 3, clone RP23-46L5, complete sequence
          Length = 227081

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 630   atccagagcagcatcaatctcatc 653
             ||||||||| ||||||||||||||
Sbjct: 43728 atccagagctgcatcaatctcatc 43705

---

>ref|XM_775598.1| PREDICTED: Strongylocentrotus purpuratus similar to chondroitin
           sulfate proteoglycan 6 (LOC575183), mRNA
          Length = 531

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 646 atctcatcaaagaggtagaacggagctgggtcacat 681
           |||||||| ||||||||||| || || |||||||||
Sbjct: 146 atctcatcgaagaggtagaaaggggcggggtcacat 111

---

>ref|XM_502000.1| Yarrowia lipolytica CLIB122, YALI0C19129g predicted mRNA
          Length = 4821

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 631  tccagagcagcatcaatctc 650
            ||||||||||||||||||||
Sbjct: 4403 tccagagcagcatcaatctc 4384

---

>emb|AL390879.20| Human DNA sequence from clone RP11-308D16 on chromosome Xq25-27.1
             Contains the 3' end of a novel gene, a serine/arginine
             repetitive matrix 1 (SRRM1) pseudogene (LOC347480), the
             GPR101 gene for G protein-coupled receptor 101 and four
             CpG islands, complete sequence
          Length = 172280

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 356   actcaaaatgtaaagaggaa 375
             ||||||||||||||||||||
Sbjct: 24487 actcaaaatgtaaagaggaa 24468

---

>gb|AC164097.2| Mus musculus BAC clone RP23-141F18 from chromosome 16, complete sequence
          Length = 217725

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 289    acaagaaacaaacagagatg 308
              ||||||||||||||||||||
Sbjct: 197460 acaagaaacaaacagagatg 197441

---

>emb|AJ534334.3|TRU534334 Takifugu rubripes mRNA for SMC3 protein
          Length = 3654

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 646  atctcatcaaagaggtagaacggagctgggtcacat 681
            ||||||||||| ||||| || ||||| |||||||||
Sbjct: 3434 atctcatcaaacaggtaaaagggagccgggtcacat 3399

---

>emb|AJ534940.2|MMU534940 Mus musculus mRNA for SMC4 protein
          Length = 3861

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 630  atccagagcagcatcaatctcatc 653
            ||||||||| ||||||||||||||
Sbjct: 3672 atccagagctgcatcaatctcatc 3649

---

>gb|AC099664.2| Homo sapiens chromosome 3 clone RP11-6B4, complete sequence
          Length = 157223

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 350    aaggtaactcaaaatgtaaa 369
              ||||||||||||||||||||
Sbjct: 116782 aaggtaactcaaaatgtaaa 116763

---

>dbj|AB159668.1| Nemalionopsis shawii chloroplast tufA gene for elongation factor
           TU, partial cds
          Length = 1140

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 637 gcagcatcaatctcatcaaa 656
           ||||||||||||||||||||
Sbjct: 135 gcagcatcaatctcatcaaa 116

---

>gb|AC004655.1| Homo sapiens Xp22-140-141 BAC GSHB-128G5 (Genome Systems Human BAC
              library) complete sequence
          Length = 134929

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 277    aaacatcttgctacaagaaa 296
              ||||||||||||||||||||
Sbjct: 115115 aaacatcttgctacaagaaa 115096

---

>ref|XM_683028.1| PREDICTED: Danio rerio similar to chromosome adhesion protein
            SMC1-like (LOC559665), mRNA
          Length = 3471

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 630  atccagagcagcatcaatctcatc 653
            ||||| ||||||||||||||||||
Sbjct: 3261 atccaaagcagcatcaatctcatc 3238

---

>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome
          Length = 3561584

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 519     cttgtccgcgaccttcagga 538
               ||||||||||||||||||||
Sbjct: 2032998 cttgtccgcgaccttcagga 2032979

---

>gb|AY275833.1| Homo sapiens polymerase (DNA directed), alpha (POLA) gene, complete cds
          Length = 304837

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 277   aaacatcttgctacaagaaa 296
             ||||||||||||||||||||
Sbjct: 18479 aaacatcttgctacaagaaa 18460

---

>gb|AC119193.9| Mus musculus chromosome 7, clone RP24-178L6, complete sequence
          Length = 162310

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                 
Query: 646   atctcatcaaagaggtagaacggagctgggtcacat 681
             ||||||||||| ||||| || ||||| |||||||||
Sbjct: 20838 atctcatcaaacaggtaaaaaggagcggggtcacat 20873

---

>dbj|AK049487.1| Mus musculus 7 days embryo whole body cDNA, RIKEN full-length
           enriched library, clone:C430016J18 product:XCAP-C/SMC4
           HOMOLOG GLUON homolog [Drosophila melanogaster], full
           insert sequence
          Length = 1363

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 630 atccagagcagcatcaatctcatc 653
           ||||||||| ||||||||||||||
Sbjct: 827 atccagagctgcatcaatctcatc 804

---

>ref|NM_064413.4| Caenorhabditis elegans Member of AAA family binding CED-4 family
            member (mac-1) (mac-1) mRNA, complete cds
          Length = 2559

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 639  agcatcaatctcatcaaaga 658
            ||||||||||||||||||||
Sbjct: 1916 agcatcaatctcatcaaaga 1897

---

>gb|BC025542.1| Mus musculus SMC4 structural maintenance of chromosomes 4-like 1
           (yeast), mRNA (cDNA clone IMAGE:5253686), with apparent
           retained intron
          Length = 767

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 630 atccagagcagcatcaatctcatc 653
           ||||||||| ||||||||||||||
Sbjct: 468 atccagagctgcatcaatctcatc 445

---

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 435     gtcgtgctcgatgaagtcca 454
               ||||||||||||||||||||
Sbjct: 1844252 gtcgtgctcgatgaagtcca 1844271

---

>gb|AC154705.2| Mus musculus BAC clone RP23-131F11 from chromosome 16, complete sequence
          Length = 177886

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 289    acaagaaacaaacagagatg 308
              ||||||||||||||||||||
Sbjct: 130620 acaagaaacaaacagagatg 130639

---

>gb|AF545594.1| Bangiopsis subsimplex elongation factor Tu (tufA) gene, partial
           cds; chloroplast gene for chloroplast product
          Length = 975

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 637 gcagcatcaatctcatcaaa 656
           ||||||||||||||||||||
Sbjct: 89  gcagcatcaatctcatcaaa 70

---

>gb|BC062939.1| Mus musculus SMC4 structural maintenance of chromosomes 4-like 1
            (yeast), mRNA (cDNA clone MGC:86128 IMAGE:6841276),
            complete cds
          Length = 4101

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 630  atccagagcagcatcaatctcatc 653
            ||||||||| ||||||||||||||
Sbjct: 3796 atccagagctgcatcaatctcatc 3773

---

>gb|AF059715.1|AF059715 Caenorhabditis elegans cell survival CED-4-interacting protein MAC-1
            mRNA, complete cds
          Length = 2442

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 639  agcatcaatctcatcaaaga 658
            ||||||||||||||||||||
Sbjct: 1914 agcatcaatctcatcaaaga 1895

---

>gb|AY108788.1| Zea mays PCO064665 mRNA sequence
          Length = 824

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 631 tccagagcagcatcaatctcatca 654
           |||| |||||||||||||||||||
Sbjct: 570 tccacagcagcatcaatctcatca 547

---

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 435     gtcgtgctcgatgaagtcca 454
               ||||||||||||||||||||
Sbjct: 1841973 gtcgtgctcgatgaagtcca 1841992

---

>gb|U38804.1|PPU38804 Porphyra purpurea chloroplast, complete genome
          Length = 191028

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 637   gcagcatcaatctcatcaaa 656
             ||||||||||||||||||||
Sbjct: 91947 gcagcatcaatctcatcaaa 91966

---

>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica
          Length = 3272609

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 631     tccagagcagcatcaatctc 650
               ||||||||||||||||||||
Sbjct: 2615050 tccagagcagcatcaatctc 2615031

---

>gb|AC165159.2| Mus musculus BAC clone RP23-234N1 from chromosome 13, complete sequence
          Length = 215158

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 286    gctacaagaaacaaacagag 305
              ||||||||||||||||||||
Sbjct: 202895 gctacaagaaacaaacagag 202876

---

>gb|CP000038.1| Shigella sonnei Ss046, complete genome
          Length = 4825265

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 360     aaaatgtaaagaggaacaac 379
               ||||||||||||||||||||
Sbjct: 1033648 aaaatgtaaagaggaacaac 1033629


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,212,307
Number of Sequences: 3902068
Number of extensions: 5212307
Number of successful extensions: 97922
Number of sequences better than 10.0: 78
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 97597
Number of HSP's gapped (non-prelim): 324
length of query: 689
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 666
effective length of database: 17,143,297,704
effective search space: 11417436270864
effective search space used: 11417436270864
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

---