ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd23b05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RIR1_ENCCU (Q8SR37) Ribonucleoside-diphosphate reductase large c... 28 7.7

>RIR1_ENCCU (Q8SR37) Ribonucleoside-diphosphate reductase large chain (EC|
           1.17.4.1) (Ribonucleotide reductase)
          Length = 768

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
 Frame = -2

Query: 204 VVDLASTRFGIVDHHQSIIYSVLFPIEVRTATIVFFGLY---KEGVYCKHVRASTRLVQV 34
           V+DLA+ R   VD  QS+   +  P   +  ++ F+G +   K G+Y    R  T  ++ 
Sbjct: 683 VIDLAADRQVFVDQSQSLNIFIAKPTYSQLTSMHFYGYHCGLKTGMYYLRTRPITSAIKF 742

Query: 33  XL*NRPATYT 4
            +  + A  T
Sbjct: 743 TVDKKLAEKT 752


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,543,526
Number of Sequences: 219361
Number of extensions: 674387
Number of successful extensions: 1506
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1506
length of database: 80,573,946
effective HSP length: 75
effective length of database: 64,121,871
effective search space used: 1538924904
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top