ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd23b02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1THT1_SCHPO (Q09684) Nuclear fusion protein tht1 30 1.5
2URIC_DROPS (P22673) Uricase (EC 1.7.3.3) (Urate oxidase) 28 5.8
3ENGC1_BACTN (Q8A5I9) Probable GTPase engC protein 1 (EC 3.6.1.-) 27 9.9

>THT1_SCHPO (Q09684) Nuclear fusion protein tht1|
          Length = 577

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 97  RGSVCICFPSIENHTYWYTSIASHYYSRTHLSXLS 201
           RGS   C   +E+ + W+ S  SH++   HL  L+
Sbjct: 114 RGSQSECVSKLESTSTWWLSFTSHFHDVNHLCRLA 148



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>URIC_DROPS (P22673) Uricase (EC 1.7.3.3) (Urate oxidase)|
          Length = 345

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
 Frame = +1

Query: 10  KFXRXFEPYXXVPRYAHMRV---RIKCMINRGRGSVCICFPSIEN-----HTYWYTSIAS 165
           K+    E +  V  Y   RV     K + N+G+GS C  F SI+N     H + +T  A 
Sbjct: 117 KYSHVEEAHVHVETYPWQRVCQEETKSVNNQGQGS-CNNFTSIDNRSLHNHAFIFTPTAV 175

Query: 166 HY 171
           HY
Sbjct: 176 HY 177



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>ENGC1_BACTN (Q8A5I9) Probable GTPase engC protein 1 (EC 3.6.1.-)|
          Length = 310

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -2

Query: 150 VPVRMIFDGREAYANAPPSSIDHALDTYTHVCVP 49
           VPV+++F+  +AY       +D  ++ YTH+  P
Sbjct: 119 VPVKLVFNKVDAYNEDELRYLDALINLYTHIGYP 152


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,459,334
Number of Sequences: 219361
Number of extensions: 596911
Number of successful extensions: 1110
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1110
length of database: 80,573,946
effective HSP length: 81
effective length of database: 62,805,705
effective search space used: 1507336920
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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