Clone Name | rbasd23b02 |
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Clone Library Name | barley_pub |
>emb|X52572.1|HVBDG Barley DNA for (1-3,1-4)-beta-D-glucanase (EC 3.2.1.73) Length = 6260 Score = 492 bits (248), Expect = e-136 Identities = 291/311 (93%) Strand = Plus / Minus Query: 9 caagttttgncgaanttttgaaccctacaananagtncctaggtacgcacacatgcgtgt 68 ||||||||| |||| ||||||||||||||| | ||| ||||||||||||||||||||||| Sbjct: 5790 caagttttgacgaaattttgaaccctacaatatagttcctaggtacgcacacatgcgtgt 5731 Query: 69 acgtatcaagtgcatgatcaatcgaggaagggggagcgtttgcatatgcttcccttccat 128 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5730 acgtatcaagtgcatgatcaatcgaggaagggggagcgtttgcatatgcttcccttccat 5671 Query: 129 cgaaaatcatacgtactggtacactagtatagcaagccactactactcgcgtacgcatct 188 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5670 cgaaaatcatacgtactggtacactagtatagcaagccactactactcgcgtacgcatct 5611 Query: 189 gagctgnctnagcggtcgcatcccntttttccaacccaagccctgtacaatacataatgt 248 |||||| || |||||||||||||| || |||||||||||||||||||||||||||||| Sbjct: 5610 gagctgcctcagcggtcgcatcccaagttcccaacccaagccctgtacaatacataatgt 5551 Query: 249 gcgcatacgtncggcgtacacgcnctnatacgcncgcgcgtncgtacggacatacngnca 308 |||||||||| |||||||||||| || |||||| ||||||| ||||||||||||| | || Sbjct: 5550 gcgcatacgtacggcgtacacgctcttatacgcgcgcgcgtacgtacggacatacgggca 5491 Query: 309 ctangnagctg 319 ||| | ||||| Sbjct: 5490 ctaggtagctg 5480
>emb|X56260.1|HVGLUEND Barley DNA for (1,3;1,4)-beta-glucanase.(EC number 3.2.1.73) Length = 4643 Score = 464 bits (234), Expect = e-128 Identities = 288/311 (92%), Gaps = 3/311 (0%) Strand = Plus / Minus Query: 9 caagttttgncgaanttttgaaccctacaananagtncctaggtacgcacacatgcgtgt 68 ||||||||| |||| ||||||||||||||| | ||| ||||||||||||||||||||||| Sbjct: 4380 caagttttgacgaaattttgaaccctacaatatagttcctaggtacgcacacatgcgtgt 4321 Query: 69 acgtatcaagtgcatgatcaatcgaggaagggggagcgtttgcatatgcttcccttccat 128 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4320 acgtatcaagtgcatgatcaatcgaggaagggggagcgtttgcatatgcttcccttccat 4261 Query: 129 cgaaaatcatacgtactggtacactagtatagcaagccactactactcgcgtacgcatct 188 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 4260 cgaaaatcatacgtactggtacactagtatagcaagcc---actactcgcgtacgcatct 4204 Query: 189 gagctgnctnagcggtcgcatcccntttttccaacccaagccctgtacaatacataatgt 248 |||||| || |||||||||||||| || |||||||||||||||||||||||||||||| Sbjct: 4203 gagctgcctcagcggtcgcatcccaagttcccaacccaagccctgtacaatacataatgt 4144 Query: 249 gcgcatacgtncggcgtacacgcnctnatacgcncgcgcgtncgtacggacatacngnca 308 |||||||||| |||||||||||| || |||||| ||||||| ||||||||||||| | || Sbjct: 4143 gcgcatacgtacggcgtacacgctcttatacgcgcgcgcgtacgtacggacatacgggca 4084 Query: 309 ctangnagctg 319 ||| | ||||| Sbjct: 4083 ctaggtagctg 4073
>emb|X56775.1|HVGLB1 H.vulgare Glb 1 gene for 1-3,1-4-beta-D-glucanase Length = 4849 Score = 448 bits (226), Expect = e-123 Identities = 287/311 (92%), Gaps = 4/311 (1%) Strand = Plus / Minus Query: 9 caagttttgncgaanttttgaaccctacaananagtncctaggtacgcacacatgcgtgt 68 ||||||||| |||| ||||||||||||||| | ||| ||||||||||||||||||||||| Sbjct: 4779 caagttttgacgaaattttgaaccctacaatatagttcctaggtacgcacacatgcgtgt 4720 Query: 69 acgtatcaagtgcatgatcaatcgaggaagggggagcgtttgcatatgcttcccttccat 128 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4719 acgtatcaagtgcatgatcaatcgaggaagggggagcgtttgcatatgcttcccttccat 4660 Query: 129 cgaaaatcatacgtactggtacactagtatagcaagccactactactcgcgtacgcatct 188 |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| Sbjct: 4659 cgaaaatcatacgtactggtacactagtatagcaagcc---actactcgcgtacg-atct 4604 Query: 189 gagctgnctnagcggtcgcatcccntttttccaacccaagccctgtacaatacataatgt 248 |||||| || |||||||||||||| || |||||||||||||||||||||||||||||| Sbjct: 4603 gagctgcctcagcggtcgcatcccaagttcccaacccaagccctgtacaatacataatgt 4544 Query: 249 gcgcatacgtncggcgtacacgcnctnatacgcncgcgcgtncgtacggacatacngnca 308 |||||||||| |||||||||||| || |||||| ||||||| ||||||||||||| | || Sbjct: 4543 gcgcatacgtacggcgtacacgctcttatacgcgcgcgcgtacgtacggacatacgggca 4484 Query: 309 ctangnagctg 319 ||| | ||||| Sbjct: 4483 ctaggtagctg 4473
>emb|Z22873.1|TABETGLUA T.aestivum beta glucanase mRNA, complete CDS Length = 1434 Score = 192 bits (97), Expect = 5e-46 Identities = 228/273 (83%), Gaps = 14/273 (5%) Strand = Plus / Minus Query: 9 caagttttgncgaanttttgaaccctacaananagtncctaggtacgcacacatgcgtgt 68 ||||||||| |||| ||||||||||||||| | ||| | || |||||||||||| |||| Sbjct: 1359 caagttttgacgaaattttgaaccctacaatatagttc-tacttacgcacacatgtgtgt 1301 Query: 69 acgtatcaagtgcatgatcaatcgaggaagggggagcgtttgcatatgcttcccttccat 128 |||||||| |||||||| |||||| |||||| |||||||| ||| ||| ||||||||| Sbjct: 1300 gcgtatcaaatgcatgatgaatcgacgaagggagagcgtttacatctgccccccttccat 1241 Query: 129 cgaaaatcatacgtactggtacactagtatagcaagccactactactcgcgtacgcatct 188 || ||||||||| | ||||||| |||||||| ||||||||| |||||||||| ||| Sbjct: 1240 cgtaaatcatacaca----tacactactatagcaaaccactacta-tcgcgtacgcgtct 1186 Query: 189 gagctgnctnagcggtcgcatcccntttttccaacccaagccctgtacaatacataatgt 248 |||||| || |||||||||| | |||||||||||||||||||||||||||||| Sbjct: 1185 gagctgcctcagcggtcgcacc--------ccaacccaagccctgtacaatacataatgt 1134 Query: 249 gcgcatacgtncggcgtacacgcnctnatacgc 281 || ||||||| |||| ||||||| || |||||| Sbjct: 1133 gcacatacgtacggcatacacgctcttatacgc 1101
>emb|Z22874.1|TABETGLUB T.aestivum (1,3;1,4) beta glucanase mRNA, complete CDS Length = 1426 Score = 178 bits (90), Expect = 7e-42 Identities = 249/305 (81%), Gaps = 20/305 (6%) Strand = Plus / Minus Query: 13 ttttgncgaanttttgaaccctacaananagtncctaggtacgcacacatgcgtgtacgt 72 ||||| |||| ||||||||||||||| | ||| | || |||||||||||| |||||||| Sbjct: 1369 ttttgacgaaattttgaaccctacaatatagttc-tacttacgcacacatgtgtgtacgt 1311 Query: 73 atcaagtgcatgatcaatcgaggaagggggagcgtttgcatatgcttcccttccatcgaa 132 ||||| || ||||| |||||| |||||| |||||||| ||| |||||||||||||||| | Sbjct: 1310 atcaaatgtatgatgaatcgacgaagggagagcgtttacatctgcttcccttccatcgta 1251 Query: 133 aatcatacgtactggtacactagtatagcaagccactactactcgcgtacgcatctgagc 192 |||||||| | ||||||| || ||||| ||||||||| | |||||||||||||||| Sbjct: 1250 aatcatacaca----tacactactacagcaaaccactacta-tagcgtacgcatctgagc 1196 Query: 193 tgnctnagcggtcgcatcccntttttccaacccaagccctgtacaatacataatgtgcgc 252 || || |||||||||| | ||||||||| |||||||||||||||||||||| | Sbjct: 1195 tgcctcagcggtcgcacc--------ccaacccaaaccctgtacaatacataatgtgcac 1144 Query: 253 atacgtncggcgtacacgcnctnatacg------cncgcgcgtncgtacggacatacngn 306 |||||| | || ||||||| || ||||| | ||||||| ||||||||||||| | Sbjct: 1143 atacgtaccgcatacacgctcttatacgcgtgtacgcgcgcgtacgtacggacatacgga 1084 Query: 307 cacta 311 ||||| Sbjct: 1083 cacta 1079
>gb|AC022675.7| Mus musculus chromosome 1, clone RP23-59N15, complete sequence Length = 181063 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 236 caatacataatgtgcgcatac 256 ||||||||||||||||||||| Sbjct: 45217 caatacataatgtgcgcatac 45237
>emb|Z15131.1|ASBGLUCAN A.sativa mRNA for beta glucanase Length = 1448 Score = 42.1 bits (21), Expect = 1.1 Identities = 37/42 (88%), Gaps = 1/42 (2%) Strand = Plus / Minus Query: 240 acataatgtgcgcatacgtncggcgtacacgcnctnatacgc 281 ||||||||||| ||||||| | |||||||||| || |||||| Sbjct: 1139 acataatgtgcacatacgtac-gcgtacacgcccttatacgc 1099
>emb|AL365314.16| Mouse DNA sequence from clone RP23-106N23 on chromosome 1, complete sequence Length = 182054 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 236 caatacataatgtgcgcatac 256 ||||||||||||||||||||| Sbjct: 176184 caatacataatgtgcgcatac 176164 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,001,923 Number of Sequences: 3902068 Number of extensions: 1001923 Number of successful extensions: 14150 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 14134 Number of HSP's gapped (non-prelim): 14 length of query: 319 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 297 effective length of database: 17,147,199,772 effective search space: 5092718332284 effective search space used: 5092718332284 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)