ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd23b02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|X52572.1|HVBDG Barley DNA for (1-3,1-4)-beta-D-glucanase (EC... 492 e-136
2emb|X56260.1|HVGLUEND Barley DNA for (1,3;1,4)-beta-glucanase.(E... 464 e-128
3emb|X56775.1|HVGLB1 H.vulgare Glb 1 gene for 1-3,1-4-beta-D-gluc... 448 e-123
4emb|Z22873.1|TABETGLUA T.aestivum beta glucanase mRNA, complete CDS 192 5e-46
5emb|Z22874.1|TABETGLUB T.aestivum (1,3;1,4) beta glucanase mRNA,... 178 7e-42
6gb|AC022675.7| Mus musculus chromosome 1, clone RP23-59N15, comp... 42 1.1
7emb|Z15131.1|ASBGLUCAN A.sativa mRNA for beta glucanase 42 1.1
8emb|AL365314.16| Mouse DNA sequence from clone RP23-106N23 on ch... 42 1.1

>emb|X52572.1|HVBDG Barley DNA for (1-3,1-4)-beta-D-glucanase (EC 3.2.1.73)
          Length = 6260

 Score =  492 bits (248), Expect = e-136
 Identities = 291/311 (93%)
 Strand = Plus / Minus

                                                                        
Query: 9    caagttttgncgaanttttgaaccctacaananagtncctaggtacgcacacatgcgtgt 68
            ||||||||| |||| ||||||||||||||| | ||| |||||||||||||||||||||||
Sbjct: 5790 caagttttgacgaaattttgaaccctacaatatagttcctaggtacgcacacatgcgtgt 5731

                                                                        
Query: 69   acgtatcaagtgcatgatcaatcgaggaagggggagcgtttgcatatgcttcccttccat 128
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5730 acgtatcaagtgcatgatcaatcgaggaagggggagcgtttgcatatgcttcccttccat 5671

                                                                        
Query: 129  cgaaaatcatacgtactggtacactagtatagcaagccactactactcgcgtacgcatct 188
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5670 cgaaaatcatacgtactggtacactagtatagcaagccactactactcgcgtacgcatct 5611

                                                                        
Query: 189  gagctgnctnagcggtcgcatcccntttttccaacccaagccctgtacaatacataatgt 248
            |||||| || ||||||||||||||   || ||||||||||||||||||||||||||||||
Sbjct: 5610 gagctgcctcagcggtcgcatcccaagttcccaacccaagccctgtacaatacataatgt 5551

                                                                        
Query: 249  gcgcatacgtncggcgtacacgcnctnatacgcncgcgcgtncgtacggacatacngnca 308
            |||||||||| |||||||||||| || |||||| ||||||| ||||||||||||| | ||
Sbjct: 5550 gcgcatacgtacggcgtacacgctcttatacgcgcgcgcgtacgtacggacatacgggca 5491

                       
Query: 309  ctangnagctg 319
            ||| | |||||
Sbjct: 5490 ctaggtagctg 5480



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>emb|X56260.1|HVGLUEND Barley DNA for (1,3;1,4)-beta-glucanase.(EC number 3.2.1.73)
          Length = 4643

 Score =  464 bits (234), Expect = e-128
 Identities = 288/311 (92%), Gaps = 3/311 (0%)
 Strand = Plus / Minus

                                                                        
Query: 9    caagttttgncgaanttttgaaccctacaananagtncctaggtacgcacacatgcgtgt 68
            ||||||||| |||| ||||||||||||||| | ||| |||||||||||||||||||||||
Sbjct: 4380 caagttttgacgaaattttgaaccctacaatatagttcctaggtacgcacacatgcgtgt 4321

                                                                        
Query: 69   acgtatcaagtgcatgatcaatcgaggaagggggagcgtttgcatatgcttcccttccat 128
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4320 acgtatcaagtgcatgatcaatcgaggaagggggagcgtttgcatatgcttcccttccat 4261

                                                                        
Query: 129  cgaaaatcatacgtactggtacactagtatagcaagccactactactcgcgtacgcatct 188
            ||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||
Sbjct: 4260 cgaaaatcatacgtactggtacactagtatagcaagcc---actactcgcgtacgcatct 4204

                                                                        
Query: 189  gagctgnctnagcggtcgcatcccntttttccaacccaagccctgtacaatacataatgt 248
            |||||| || ||||||||||||||   || ||||||||||||||||||||||||||||||
Sbjct: 4203 gagctgcctcagcggtcgcatcccaagttcccaacccaagccctgtacaatacataatgt 4144

                                                                        
Query: 249  gcgcatacgtncggcgtacacgcnctnatacgcncgcgcgtncgtacggacatacngnca 308
            |||||||||| |||||||||||| || |||||| ||||||| ||||||||||||| | ||
Sbjct: 4143 gcgcatacgtacggcgtacacgctcttatacgcgcgcgcgtacgtacggacatacgggca 4084

                       
Query: 309  ctangnagctg 319
            ||| | |||||
Sbjct: 4083 ctaggtagctg 4073



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>emb|X56775.1|HVGLB1 H.vulgare Glb 1 gene for 1-3,1-4-beta-D-glucanase
          Length = 4849

 Score =  448 bits (226), Expect = e-123
 Identities = 287/311 (92%), Gaps = 4/311 (1%)
 Strand = Plus / Minus

                                                                        
Query: 9    caagttttgncgaanttttgaaccctacaananagtncctaggtacgcacacatgcgtgt 68
            ||||||||| |||| ||||||||||||||| | ||| |||||||||||||||||||||||
Sbjct: 4779 caagttttgacgaaattttgaaccctacaatatagttcctaggtacgcacacatgcgtgt 4720

                                                                        
Query: 69   acgtatcaagtgcatgatcaatcgaggaagggggagcgtttgcatatgcttcccttccat 128
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4719 acgtatcaagtgcatgatcaatcgaggaagggggagcgtttgcatatgcttcccttccat 4660

                                                                        
Query: 129  cgaaaatcatacgtactggtacactagtatagcaagccactactactcgcgtacgcatct 188
            ||||||||||||||||||||||||||||||||||||||   |||||||||||||| ||||
Sbjct: 4659 cgaaaatcatacgtactggtacactagtatagcaagcc---actactcgcgtacg-atct 4604

                                                                        
Query: 189  gagctgnctnagcggtcgcatcccntttttccaacccaagccctgtacaatacataatgt 248
            |||||| || ||||||||||||||   || ||||||||||||||||||||||||||||||
Sbjct: 4603 gagctgcctcagcggtcgcatcccaagttcccaacccaagccctgtacaatacataatgt 4544

                                                                        
Query: 249  gcgcatacgtncggcgtacacgcnctnatacgcncgcgcgtncgtacggacatacngnca 308
            |||||||||| |||||||||||| || |||||| ||||||| ||||||||||||| | ||
Sbjct: 4543 gcgcatacgtacggcgtacacgctcttatacgcgcgcgcgtacgtacggacatacgggca 4484

                       
Query: 309  ctangnagctg 319
            ||| | |||||
Sbjct: 4483 ctaggtagctg 4473



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>emb|Z22873.1|TABETGLUA T.aestivum beta glucanase mRNA, complete CDS
          Length = 1434

 Score =  192 bits (97), Expect = 5e-46
 Identities = 228/273 (83%), Gaps = 14/273 (5%)
 Strand = Plus / Minus

                                                                        
Query: 9    caagttttgncgaanttttgaaccctacaananagtncctaggtacgcacacatgcgtgt 68
            ||||||||| |||| ||||||||||||||| | ||| | ||  |||||||||||| ||||
Sbjct: 1359 caagttttgacgaaattttgaaccctacaatatagttc-tacttacgcacacatgtgtgt 1301

                                                                        
Query: 69   acgtatcaagtgcatgatcaatcgaggaagggggagcgtttgcatatgcttcccttccat 128
             |||||||| |||||||| |||||| |||||| |||||||| ||| |||  |||||||||
Sbjct: 1300 gcgtatcaaatgcatgatgaatcgacgaagggagagcgtttacatctgccccccttccat 1241

                                                                        
Query: 129  cgaaaatcatacgtactggtacactagtatagcaagccactactactcgcgtacgcatct 188
            || |||||||||  |    ||||||| |||||||| ||||||||| |||||||||| |||
Sbjct: 1240 cgtaaatcatacaca----tacactactatagcaaaccactacta-tcgcgtacgcgtct 1186

                                                                        
Query: 189  gagctgnctnagcggtcgcatcccntttttccaacccaagccctgtacaatacataatgt 248
            |||||| || |||||||||| |        ||||||||||||||||||||||||||||||
Sbjct: 1185 gagctgcctcagcggtcgcacc--------ccaacccaagccctgtacaatacataatgt 1134

                                             
Query: 249  gcgcatacgtncggcgtacacgcnctnatacgc 281
            || ||||||| |||| ||||||| || ||||||
Sbjct: 1133 gcacatacgtacggcatacacgctcttatacgc 1101



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>emb|Z22874.1|TABETGLUB T.aestivum (1,3;1,4) beta glucanase mRNA, complete CDS
          Length = 1426

 Score =  178 bits (90), Expect = 7e-42
 Identities = 249/305 (81%), Gaps = 20/305 (6%)
 Strand = Plus / Minus

                                                                        
Query: 13   ttttgncgaanttttgaaccctacaananagtncctaggtacgcacacatgcgtgtacgt 72
            ||||| |||| ||||||||||||||| | ||| | ||  |||||||||||| ||||||||
Sbjct: 1369 ttttgacgaaattttgaaccctacaatatagttc-tacttacgcacacatgtgtgtacgt 1311

                                                                        
Query: 73   atcaagtgcatgatcaatcgaggaagggggagcgtttgcatatgcttcccttccatcgaa 132
            ||||| || ||||| |||||| |||||| |||||||| ||| |||||||||||||||| |
Sbjct: 1310 atcaaatgtatgatgaatcgacgaagggagagcgtttacatctgcttcccttccatcgta 1251

                                                                        
Query: 133  aatcatacgtactggtacactagtatagcaagccactactactcgcgtacgcatctgagc 192
            ||||||||  |    ||||||| || ||||| ||||||||| | ||||||||||||||||
Sbjct: 1250 aatcatacaca----tacactactacagcaaaccactacta-tagcgtacgcatctgagc 1196

                                                                        
Query: 193  tgnctnagcggtcgcatcccntttttccaacccaagccctgtacaatacataatgtgcgc 252
            || || |||||||||| |        ||||||||| |||||||||||||||||||||| |
Sbjct: 1195 tgcctcagcggtcgcacc--------ccaacccaaaccctgtacaatacataatgtgcac 1144

                                                                        
Query: 253  atacgtncggcgtacacgcnctnatacg------cncgcgcgtncgtacggacatacngn 306
            |||||| | || ||||||| || |||||      | ||||||| ||||||||||||| | 
Sbjct: 1143 atacgtaccgcatacacgctcttatacgcgtgtacgcgcgcgtacgtacggacatacgga 1084

                 
Query: 307  cacta 311
            |||||
Sbjct: 1083 cacta 1079



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>gb|AC022675.7| Mus musculus chromosome 1, clone RP23-59N15, complete sequence
          Length = 181063

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 236   caatacataatgtgcgcatac 256
             |||||||||||||||||||||
Sbjct: 45217 caatacataatgtgcgcatac 45237



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>emb|Z15131.1|ASBGLUCAN A.sativa mRNA for beta glucanase
          Length = 1448

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 37/42 (88%), Gaps = 1/42 (2%)
 Strand = Plus / Minus

                                                      
Query: 240  acataatgtgcgcatacgtncggcgtacacgcnctnatacgc 281
            ||||||||||| ||||||| | |||||||||| || ||||||
Sbjct: 1139 acataatgtgcacatacgtac-gcgtacacgcccttatacgc 1099



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>emb|AL365314.16| Mouse DNA sequence from clone RP23-106N23 on chromosome 1, complete
              sequence
          Length = 182054

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 236    caatacataatgtgcgcatac 256
              |||||||||||||||||||||
Sbjct: 176184 caatacataatgtgcgcatac 176164


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,001,923
Number of Sequences: 3902068
Number of extensions: 1001923
Number of successful extensions: 14150
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 14134
Number of HSP's gapped (non-prelim): 14
length of query: 319
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 297
effective length of database: 17,147,199,772
effective search space: 5092718332284
effective search space used: 5092718332284
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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