>TOC34_ARATH (Q38906) Translocase of chloroplast 34 (EC 3.6.5.-) (34 kDa|
           chloroplast outer envelope protein) (GTP-binding protein
           OEP34) (AtToc34)
          Length = 313

 Score = 65.1 bits (157), Expect = 1e-10
 Identities = 31/58 (53%), Positives = 40/58 (68%)
 Frame = -3

Query: 447 SRSIHVDQKLIVGPNPNNRWKKYIPLILAVQYFFVVKGIRRAIHSDISNGKLDDWEQR 274
           +++IHVD+KL+ GPNPN R KK IPL+ A QY  V+K + RAI SD+S      WE R
Sbjct: 247 NKAIHVDKKLVEGPNPNERGKKLIPLMFAFQYLLVMKPLVRAIKSDVSRESKLAWELR 304

>TOC34_PEA (Q41009) Translocase of chloroplast 34 (EC 3.6.5.-) (34 kDa|
           chloroplast outer envelope protein) (GTP-binding protein
           OEP34) (GTP-binding protein IAP34)
          Length = 310

 Score = 58.9 bits (141), Expect = 7e-09
 Identities = 30/58 (51%), Positives = 35/58 (60%)
 Frame = -3

Query: 447 SRSIHVDQKLIVGPNPNNRWKKYIPLILAVQYFFVVKGIRRAIHSDISNGKLDDWEQR 274
           S SI VD+ LI GPNPN R K +IPLI A+QY F+ K I   I  DI+      WE R
Sbjct: 247 SESIFVDKNLIDGPNPNQRGKLWIPLIFALQYLFLAKPIEALIRRDIATETKPAWETR 304

>UVRA_CHLPN (Q9Z985) UvrABC system protein A (UvrA protein) (Excinuclease ABC|
           subunit A)
          Length = 1826

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = -1

Query: 146 CCSFVAPNSSGLFRGIYRALRDNLN 72
           CCSF    SS L+  IY+AL D LN
Sbjct: 297 CCSFAGNCSSYLYHTIYQALADALN 321

>ENK17_HUMAN (P61570) HERV-K_11q22.1 provirus ancestral Env polyprotein|
           precursor (Envelope polyprotein) [Contains: Surface
           protein (SU); Transmembrane protein (TM)]
          Length = 661

 Score = 29.6 bits (65), Expect = 4.7
 Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 8/86 (9%)
 Frame = -3

Query: 447 SRSIHVDQKLIVGPNPNNRWKKYIPLILAVQYFFV-------VKGIRRAIHSDISNGK-L 292
           S SIH+  +++ G    NR K++I  ++AV    +       V G+  A+HS + +   +
Sbjct: 446 SPSIHILTEVLKGVL--NRSKRFIFTLIAVIMGLIAVTATGAVAGV--ALHSSVQSVNFV 501

Query: 291 DDWEQRYRDLVGSGNPVDQKVSSXXN 214
           +DW++    L  S + +DQK+++  N
Sbjct: 502 NDWQKNSTRLWNSQSSIDQKLANQIN 527

>ENK12_HUMAN (P61567) HERV-K_1q22 provirus ancestral Env polyprotein (Envelope|
           polyprotein) (HERV-K102 envelope protein) (HERV-K(III)
           envelope protein) [Contains: Surface protein (SU);
           Transmembrane protein (TM)]
          Length = 588

 Score = 29.3 bits (64), Expect = 6.1
 Identities = 23/86 (26%), Positives = 46/86 (53%), Gaps = 8/86 (9%)
 Frame = -3

Query: 447 SRSIHVDQKLIVGPNPNNRWKKYIPLILAVQYFFV-------VKGIRRAIHSDISNGK-L 292
           S S+H+  +++ G    NR K++I  ++AV    +       V G+  A+HS + +   +
Sbjct: 335 SPSVHILTEVLKGVL--NRSKRFIFTLIAVIMGLIAVTATAAVAGV--ALHSSVQSVNFV 390

Query: 291 DDWEQRYRDLVGSGNPVDQKVSSXXN 214
           +DW++    L  S + +DQK+++  N
Sbjct: 391 NDWQKNSTRLWNSQSSIDQKLANQIN 416

>ENK11_HUMAN (P61566) HERV-K_22q11.21 provirus ancestral Env polyprotein|
           (Envelope polyprotein) (HERV-K101 envelope protein)
           [Contains: Surface protein (SU); Transmembrane protein
           (TM)]
          Length = 588

 Score = 29.3 bits (64), Expect = 6.1
 Identities = 23/86 (26%), Positives = 46/86 (53%), Gaps = 8/86 (9%)
 Frame = -3

Query: 447 SRSIHVDQKLIVGPNPNNRWKKYIPLILAVQYFFV-------VKGIRRAIHSDISNGK-L 292
           S S+H+  +++ G    NR K++I  ++AV    +       V G+  A+HS + +   +
Sbjct: 335 SPSVHILTEVLKGVL--NRSKRFIFTLIAVIMGLIAVTATGAVAGV--ALHSSVQSVNFV 390

Query: 291 DDWEQRYRDLVGSGNPVDQKVSSXXN 214
           +DW++    L  S + +DQK+++  N
Sbjct: 391 NDWQKNSTRLWNSQSSIDQKLANQIN 416

>ENK2_HUMAN (Q69384) HERV-K_7p22.1 provirus ancestral Env polyprotein precursor|
           (Envelope polyprotein) (HERV-K(HML-2.HOM) envelope
           protein) (HERV-K108 envelope protein) (HERV-K(C7)
           envelope protein) (EnvK2 protein) [Contains: Surface
           protein (SU); Transme
          Length = 699

 Score = 29.3 bits (64), Expect = 6.1
 Identities = 23/86 (26%), Positives = 46/86 (53%), Gaps = 8/86 (9%)
 Frame = -3

Query: 447 SRSIHVDQKLIVGPNPNNRWKKYIPLILAVQYFFV-------VKGIRRAIHSDISNGK-L 292
           S S+H+  +++ G    NR K++I  ++AV    +       V G+  A+HS + +   +
Sbjct: 446 SPSVHILTEVLKGVL--NRSKRFIFTLIAVIMGLIAVTATAAVAGV--ALHSSVQSVNFV 501

Query: 291 DDWEQRYRDLVGSGNPVDQKVSSXXN 214
           +DW++    L  S + +DQK+++  N
Sbjct: 502 NDWQKNSTRLWNSQSSIDQKLANQIN 527

>POK12_HUMAN (P63135) HERV-K_1q22 provirus ancestral Pol protein (HERV-K102 Pol|
            protein) (HERV-K(III) Pol protein) [Includes: Reverse
            transcriptase (RT) (EC 2.7.7.49); Ribonuclease H (EC
            3.1.26.4) (RNase H); Integrase (IN)]
          Length = 1459

 Score = 29.3 bits (64), Expect = 6.1
 Identities = 23/86 (26%), Positives = 46/86 (53%), Gaps = 8/86 (9%)
 Frame = -3

Query: 447  SRSIHVDQKLIVGPNPNNRWKKYIPLILAVQYFFV-------VKGIRRAIHSDISNGK-L 292
            S S+H+  +++ G    NR K++I  ++AV    +       V G+  A+HS + +   +
Sbjct: 1206 SPSVHILTEVLKGVL--NRSKRFIFTLIAVIMGLIAVTATAAVAGV--ALHSSVQSVNFV 1261

Query: 291  DDWEQRYRDLVGSGNPVDQKVSSXXN 214
            +DW++    L  S + +DQK+++  N
Sbjct: 1262 NDWQKNSTRLWNSQSSIDQKLANQIN 1287

>ENK10_HUMAN (P10267) HERV-K_5q33.3 provirus ancestral Env polyprotein (Envelope|
           polyprotein) (HERV-K10 envelope protein) (HERV-K107
           envelope protein) [Contains: Surface protein (SU);
           Transmembrane protein (TM)]
          Length = 587

 Score = 29.3 bits (64), Expect = 6.1
 Identities = 23/86 (26%), Positives = 46/86 (53%), Gaps = 8/86 (9%)
 Frame = -3

Query: 447 SRSIHVDQKLIVGPNPNNRWKKYIPLILAVQYFFV-------VKGIRRAIHSDISNGK-L 292
           S S+H+  +++ G    NR K++I  ++AV    +       V G+  A+HS + +   +
Sbjct: 334 SPSVHILTEVLKGVL--NRSKRFIFTLIAVIMGLIAVTATAAVAGV--ALHSSVQSVNFV 389

Query: 291 DDWEQRYRDLVGSGNPVDQKVSSXXN 214
           +DW++    L  S + +DQK+++  N
Sbjct: 390 NDWQKNSTRLWNSQSSIDQKLANQIN 415

>ENK5_HUMAN (Q902F9) HERV-K_19p13.11 provirus ancestral Env polyprotein|
           precursor (Envelope polyprotein) (HERV-K113 envelope
           protein) (EnvK5 protein) [Contains: Surface protein
           (SU); Transmembrane protein (TM)]
          Length = 699

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 23/86 (26%), Positives = 45/86 (52%), Gaps = 8/86 (9%)
 Frame = -3

Query: 447 SRSIHVDQKLIVGPNPNNRWKKYIPLILAVQYFFV-------VKGIRRAIHSDISNGK-L 292
           S S+H+  +++ G    NR K++I  ++AV    +       V G+  A+HS + +   +
Sbjct: 446 SPSVHILTEVLKGVL--NRSKRFIFTLIAVIMGLIAVTATAAVAGV--ALHSSVQSVNFV 501

Query: 291 DDWEQRYRDLVGSGNPVDQKVSSXXN 214
           +DW+     L  S + +DQK+++  N
Sbjct: 502 NDWQNNSTRLWNSQSSIDQKLANQIN 527

>LAML3_XENLA (P10999) Lamin-L(III) (Lamin-B3)|
          Length = 583

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 13/32 (40%), Positives = 22/32 (68%)
 Frame = +1

Query: 118 LELGATKEQHRKLNGPRSRDSHALSLARSGLR 213
           +ELG  +E++R+L    S+  + LSLA++ LR
Sbjct: 103 VELGKVREEYRQLQARNSKKENDLSLAQNQLR 134

>QUEA_AZOSE (Q5P721) S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC|
           5.-.-.-) (Queuosine biosynthesis protein queA)
          Length = 345

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +3

Query: 78  VVPESSIDSPKQTTGIRSNKRTAQEVEWTTIKRL-ACTLIGPLRP*GXXXTKLFGLPGYR 254
           V+P+ ++ +   T   R+  R    V  T+++ L      GPL   G   T+LF LPGYR
Sbjct: 229 VIPQETVAAIAAT---RAAGRRVIAVGTTSLRALEGAAQDGPLEA-GTGETELFILPGYR 284

Query: 255 FQ 260
           FQ
Sbjct: 285 FQ 286


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,223,894
Number of Sequences: 219361
Number of extensions: 1239454
Number of successful extensions: 3182
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3182
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3523384522
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)