ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd23a24
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK099032.1| Oryza sativa (japonica cultivar-group) cDNA clon... 176 4e-41
2dbj|AK058676.1| Oryza sativa (japonica cultivar-group) cDNA clon... 176 4e-41
3emb|AJ245968.2|ZMA245968 Zea mays mRNA for Toc34-1 protein (toc3... 137 4e-29
4emb|AJ271049.1|ZMA271049 Zea mays mRNA for Toc34-2 protein (toc3... 137 4e-29
5gb|AY107292.1| Zea mays PCO067487 mRNA sequence 137 4e-29
6gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 101 2e-18
7gb|AC136136.1| Genomic sequence for Oryza sativa, Nipponbare str... 101 2e-18
8dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 101 2e-18
9emb|BX855617.8| Zebrafish DNA sequence from clone DKEYP-123H10 i... 42 1.7
10dbj|AP005014.3| Homo sapiens genomic DNA, chromosome 11 clone:RP... 42 1.7
11gb|AC016019.4| Drosophila melanogaster clone BACR08P05, complete... 40 6.7
12gb|AY596295.1| Haloarcula marismortui ATCC 43049 plasmid pNG600,... 40 6.7
13gb|AC098709.3| Mus musculus BAC clone RP23-1K14 from 1, complete... 40 6.7
14ref|NM_166403.1| Drosophila melanogaster CG9945-RB, transcript v... 40 6.7
15ref|NM_137650.2| Drosophila melanogaster CG9945-RA, transcript v... 40 6.7
16gb|AY075228.1| Drosophila melanogaster AT18160 full length cDNA 40 6.7
17gb|AC099765.1| Caenorhabditis briggsae cosmid CB031I14, complete... 40 6.7
18gb|AC009218.7|AC009218 Drosophila melanogaster, chromosome 2R, r... 40 6.7
19gb|AC007837.4|AC007837 Drosophila melanogaster, chromosome 2R, r... 40 6.7
20gb|AE003791.5| Drosophila melanogaster chromosome 2R, section 59... 40 6.7
21gb|AC099712.21| Mus musculus chromosome 1, clone RP23-400C10, co... 40 6.7
22emb|AL833781.5| Mouse DNA sequence from clone RP23-447J12 on chr... 40 6.7 
>dbj|AK099032.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013128A13, full
            insert sequence
          Length = 1321

 Score =  176 bits (89), Expect = 4e-41
 Identities = 223/267 (83%), Gaps = 1/267 (0%)
 Strand = Plus / Minus

                                                                        
Query: 231  ctttttggtctaccgggttaccgcttccaaccagatctctataacgctgctcccagtcat 290
            |||| |||||||||||||    |||||||||||  ||||| |||||||| ||||||||||
Sbjct: 1084 ctttctggtctaccgggtccttgcttccaaccaagtctctgtaacgctgttcccagtcat 1025

                                                                        
Query: 291  ccagcttcccgttcgaaatgtcagaatgaatcgccctcctgattccttttaccacaaaaa 350
            | ||||||||||| || ||||||| |||||| ||||| | ||| |||||||| || ||||
Sbjct: 1024 ctagcttcccgtttgatatgtcagcatgaatggcccttcggatgccttttacaaccaaaa 965

                                                                        
Query: 351  agtactgcacagcaaggatgagaggtatgtacttcttccagcgattgttcggatttggac 410
            |||||| |||   ||||||||| |||||| || |||||||||||||||| ||||||||||
Sbjct: 964  agtactccaccataaggatgagcggtatgaacatcttccagcgattgttgggatttggac 905

                                                                        
Query: 411  cgacgattaacttctgatcaacatgaatggacctgctttncatttgagacaacgatagtg 470
            |  | |||| ||| |||||||||||||||||  ||| |  | |||||||||||  |||| 
Sbjct: 904  catctattagcttttgatcaacatgaatggatttgc-tcccgtttgagacaacagtagta 846

                                       
Query: 471  atttctttcatcaagtttgnaatccat 497
            || |||||||||||||| | |||||||
Sbjct: 845  atctctttcatcaagttcggaatccat 819
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>dbj|AK058676.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-H08, full
            insert sequence
          Length = 1406

 Score =  176 bits (89), Expect = 4e-41
 Identities = 223/267 (83%), Gaps = 1/267 (0%)
 Strand = Plus / Minus

                                                                        
Query: 231  ctttttggtctaccgggttaccgcttccaaccagatctctataacgctgctcccagtcat 290
            |||| |||||||||||||    |||||||||||  ||||| |||||||| ||||||||||
Sbjct: 1161 ctttctggtctaccgggtccttgcttccaaccaagtctctgtaacgctgttcccagtcat 1102

                                                                        
Query: 291  ccagcttcccgttcgaaatgtcagaatgaatcgccctcctgattccttttaccacaaaaa 350
            | ||||||||||| || ||||||| |||||| ||||| | ||| |||||||| || ||||
Sbjct: 1101 ctagcttcccgtttgatatgtcagcatgaatggcccttcggatgccttttacaaccaaaa 1042

                                                                        
Query: 351  agtactgcacagcaaggatgagaggtatgtacttcttccagcgattgttcggatttggac 410
            |||||| |||   ||||||||| |||||| || |||||||||||||||| ||||||||||
Sbjct: 1041 agtactccaccataaggatgagcggtatgaacatcttccagcgattgttgggatttggac 982

                                                                        
Query: 411  cgacgattaacttctgatcaacatgaatggacctgctttncatttgagacaacgatagtg 470
            |  | |||| ||| |||||||||||||||||  ||| |  | |||||||||||  |||| 
Sbjct: 981  catctattagcttttgatcaacatgaatggatttgc-tcccgtttgagacaacagtagta 923

                                       
Query: 471  atttctttcatcaagtttgnaatccat 497
            || |||||||||||||| | |||||||
Sbjct: 922  atctctttcatcaagttcggaatccat 896
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>emb|AJ245968.2|ZMA245968 Zea mays mRNA for Toc34-1 protein (toc34A gene)
          Length = 1233

 Score =  137 bits (69), Expect = 4e-29
 Identities = 177/212 (83%), Gaps = 1/212 (0%)
 Strand = Plus / Minus

                                                                       
Query: 272 taacgctgctcccagtcatccagcttcccgttcgaaatgtcagaatgaatcgccctcctg 331
           |||||||||||||||||||||| |||||| || |  || || | ||| |||||||||| |
Sbjct: 997 taacgctgctcccagtcatccaccttcccatttgcgatatctgcatggatcgccctccgg 938

                                                                       
Query: 332 attccttttaccacaaaaaagtactgcacagcaaggatgagaggtatgtacttcttccag 391
           ||||||||||| || || ||||||| ||||||||| || |  |||||| || ||||||||
Sbjct: 937 attccttttactaccaagaagtactccacagcaagtataattggtatgaacatcttccag 878

                                                                       
Query: 392 cgattgttcggatttggaccgacgattaacttctgatcaacatgaatggacctgctttnc 451
           |||||||| || ||||||||  | ||||||||||||||||||||||||| | ||||   |
Sbjct: 877 cgattgttagggtttggaccatcaattaacttctgatcaacatgaatgggcttgctc-cc 819

                                           
Query: 452 atttgagacaacgatagtgatttctttcatca 483
            ||||||| ||| | ||| |||||||||||||
Sbjct: 818 gtttgagataacaacagtaatttctttcatca 787
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>emb|AJ271049.1|ZMA271049 Zea mays mRNA for Toc34-2 protein (toc34B gene)
          Length = 1313

 Score =  137 bits (69), Expect = 4e-29
 Identities = 144/169 (85%)
 Strand = Plus / Minus

                                                                        
Query: 272  taacgctgctcccagtcatccagcttcccgttcgaaatgtcagaatgaatcgccctcctg 331
            |||||||||||||||||||| | ||||||||| |  || || | ||| |||||||||| |
Sbjct: 1043 taacgctgctcccagtcatctaccttcccgtttgcgatatctgcatggatcgccctccgg 984

                                                                        
Query: 332  attccttttaccacaaaaaagtactgcacagcaaggatgagaggtatgtacttcttccag 391
            |||||||||||||| || ||||||| |||||||||||| || |||||| ||  ||| | |
Sbjct: 983  attccttttaccaccaagaagtactccacagcaaggataagtggtatgaacaactttcgg 924

                                                             
Query: 392  cgattgttcggatttggaccgacgattaacttctgatcaacatgaatgg 440
            |||||||| || ||||||||  | |||||||||||||||||||||||||
Sbjct: 923  cgattgttagggtttggaccatcaattaacttctgatcaacatgaatgg 875
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>gb|AY107292.1| Zea mays PCO067487 mRNA sequence
          Length = 1391

 Score =  137 bits (69), Expect = 4e-29
 Identities = 177/212 (83%), Gaps = 1/212 (0%)
 Strand = Plus / Minus

                                                                        
Query: 272  taacgctgctcccagtcatccagcttcccgttcgaaatgtcagaatgaatcgccctcctg 331
            |||||||||||||||||||||| |||||| || |  || || | ||| |||||||||| |
Sbjct: 1086 taacgctgctcccagtcatccaccttcccatttgcgatatctgcatggatcgccctccgg 1027

                                                                        
Query: 332  attccttttaccacaaaaaagtactgcacagcaaggatgagaggtatgtacttcttccag 391
            ||||||||||| || || ||||||| ||||||||| || |  |||||| || ||||||||
Sbjct: 1026 attccttttactaccaagaagtactccacagcaagtataattggtatgaacatcttccag 967

                                                                        
Query: 392  cgattgttcggatttggaccgacgattaacttctgatcaacatgaatggacctgctttnc 451
            |||||||| || ||||||||  | ||||||||||||||||||||||||| | ||||   |
Sbjct: 966  cgattgttagggtttggaccatcaattaacttctgatcaacatgaatgggcttgctc-cc 908

                                            
Query: 452  atttgagacaacgatagtgatttctttcatca 483
             ||||||| ||| | ||| |||||||||||||
Sbjct: 907  gtttgagataacaacagtaatttctttcatca 876
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  101 bits (51), Expect = 2e-18
 Identities = 108/127 (85%)
 Strand = Plus / Plus

                                                                           
Query: 231     ctttttggtctaccgggttaccgcttccaaccagatctctataacgctgctcccagtcat 290
               |||| |||||||||||||    |||||||||||  ||||| |||||||| ||||||||||
Sbjct: 7403902 ctttctggtctaccgggtccttgcttccaaccaagtctctgtaacgctgttcccagtcat 7403961

                                                                           
Query: 291     ccagcttcccgttcgaaatgtcagaatgaatcgccctcctgattccttttaccacaaaaa 350
               | ||||||||||| || ||||||| |||||| ||||| | ||| |||||||| || ||||
Sbjct: 7403962 ctagcttcccgtttgatatgtcagcatgaatggcccttcggatgccttttacaaccaaaa 7404021

                      
Query: 351     agtactg 357
               |||||||
Sbjct: 7404022 agtactg 7404028



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 113/134 (84%), Gaps = 1/134 (0%)
 Strand = Plus / Plus

                                                                           
Query: 364     aaggatgagaggtatgtacttcttccagcgattgttcggatttggaccgacgattaactt 423
               ||||||||| |||||| || |||||||||||||||| |||||||||||  | |||| |||
Sbjct: 7404136 aaggatgagcggtatgaacatcttccagcgattgttgggatttggaccatctattagctt 7404195

                                                                           
Query: 424     ctgatcaacatgaatggacctgctttncatttgagacaacgatagtgatttctttcatca 483
                |||||||||||||||||  ||| |  | |||||||||||  |||| || ||||||||||
Sbjct: 7404196 ttgatcaacatgaatggatttgc-tcccgtttgagacaacagtagtaatctctttcatca 7404254

                             
Query: 484     agtttgnaatccat 497
               |||| | |||||||
Sbjct: 7404255 agttcggaatccat 7404268
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>gb|AC136136.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0071C04, from chromosome 3, complete sequence
          Length = 126078

 Score =  101 bits (51), Expect = 2e-18
 Identities = 108/127 (85%)
 Strand = Plus / Plus

                                                                         
Query: 231   ctttttggtctaccgggttaccgcttccaaccagatctctataacgctgctcccagtcat 290
             |||| |||||||||||||    |||||||||||  ||||| |||||||| ||||||||||
Sbjct: 42457 ctttctggtctaccgggtccttgcttccaaccaagtctctgtaacgctgttcccagtcat 42516

                                                                         
Query: 291   ccagcttcccgttcgaaatgtcagaatgaatcgccctcctgattccttttaccacaaaaa 350
             | ||||||||||| || ||||||| |||||| ||||| | ||| |||||||| || ||||
Sbjct: 42517 ctagcttcccgtttgatatgtcagcatgaatggcccttcggatgccttttacaaccaaaa 42576

                    
Query: 351   agtactg 357
             |||||||
Sbjct: 42577 agtactg 42583



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 113/134 (84%), Gaps = 1/134 (0%)
 Strand = Plus / Plus

                                                                         
Query: 364   aaggatgagaggtatgtacttcttccagcgattgttcggatttggaccgacgattaactt 423
             ||||||||| |||||| || |||||||||||||||| |||||||||||  | |||| |||
Sbjct: 42691 aaggatgagcggtatgaacatcttccagcgattgttgggatttggaccatctattagctt 42750

                                                                         
Query: 424   ctgatcaacatgaatggacctgctttncatttgagacaacgatagtgatttctttcatca 483
              |||||||||||||||||  ||| |  | |||||||||||  |||| || ||||||||||
Sbjct: 42751 ttgatcaacatgaatggatttgc-tcccgtttgagacaacagtagtaatctctttcatca 42809

                           
Query: 484   agtttgnaatccat 497
             |||| | |||||||
Sbjct: 42810 agttcggaatccat 42823
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  101 bits (51), Expect = 2e-18
 Identities = 108/127 (85%)
 Strand = Plus / Plus

                                                                           
Query: 231     ctttttggtctaccgggttaccgcttccaaccagatctctataacgctgctcccagtcat 290
               |||| |||||||||||||    |||||||||||  ||||| |||||||| ||||||||||
Sbjct: 7401737 ctttctggtctaccgggtccttgcttccaaccaagtctctgtaacgctgttcccagtcat 7401796

                                                                           
Query: 291     ccagcttcccgttcgaaatgtcagaatgaatcgccctcctgattccttttaccacaaaaa 350
               | ||||||||||| || ||||||| |||||| ||||| | ||| |||||||| || ||||
Sbjct: 7401797 ctagcttcccgtttgatatgtcagcatgaatggcccttcggatgccttttacaaccaaaa 7401856

                      
Query: 351     agtactg 357
               |||||||
Sbjct: 7401857 agtactg 7401863



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 113/134 (84%), Gaps = 1/134 (0%)
 Strand = Plus / Plus

                                                                           
Query: 364     aaggatgagaggtatgtacttcttccagcgattgttcggatttggaccgacgattaactt 423
               ||||||||| |||||| || |||||||||||||||| |||||||||||  | |||| |||
Sbjct: 7401971 aaggatgagcggtatgaacatcttccagcgattgttgggatttggaccatctattagctt 7402030

                                                                           
Query: 424     ctgatcaacatgaatggacctgctttncatttgagacaacgatagtgatttctttcatca 483
                |||||||||||||||||  ||| |  | |||||||||||  |||| || ||||||||||
Sbjct: 7402031 ttgatcaacatgaatggatttgc-tcccgtttgagacaacagtagtaatctctttcatca 7402089

                             
Query: 484     agtttgnaatccat 497
               |||| | |||||||
Sbjct: 7402090 agttcggaatccat 7402103
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>emb|BX855617.8| Zebrafish DNA sequence from clone DKEYP-123H10 in linkage group 1,
              complete sequence
          Length = 160094

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 308    atgtcagaatgaatcgccctcctga 332
              |||||||||||||| ||||||||||
Sbjct: 120806 atgtcagaatgaatagccctcctga 120782
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>dbj|AP005014.3| Homo sapiens genomic DNA, chromosome 11 clone:RP13-259F12, complete
             sequence
          Length = 167444

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 132   aacaaaagaacagcacaggaa 152
             |||||||||||||||||||||
Sbjct: 37484 aacaaaagaacagcacaggaa 37464
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>gb|AC016019.4| Drosophila melanogaster clone BACR08P05, complete sequence
          Length = 192157

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 386    ttccagcgattgttcggatt 405
              ||||||||||||||||||||
Sbjct: 158630 ttccagcgattgttcggatt 158649
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>gb|AY596295.1| Haloarcula marismortui ATCC 43049 plasmid pNG600, complete sequence
          Length = 155300

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 320   atcgccctcctgattccttt 339
             ||||||||||||||||||||
Sbjct: 47892 atcgccctcctgattccttt 47873
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>gb|AC098709.3| Mus musculus BAC clone RP23-1K14 from 1, complete sequence
          Length = 189774

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 373   aggtatgtacttcttccagc 392
             ||||||||||||||||||||
Sbjct: 45323 aggtatgtacttcttccagc 45342
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>ref|NM_166403.1| Drosophila melanogaster CG9945-RB, transcript variant B (CG9945),
           mRNA
          Length = 2075

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 386 ttccagcgattgttcggatt 405
           ||||||||||||||||||||
Sbjct: 454 ttccagcgattgttcggatt 435
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>ref|NM_137650.2| Drosophila melanogaster CG9945-RA, transcript variant A (CG9945),
           mRNA
          Length = 1996

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 386 ttccagcgattgttcggatt 405
           ||||||||||||||||||||
Sbjct: 454 ttccagcgattgttcggatt 435
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>gb|AY075228.1| Drosophila melanogaster AT18160 full length cDNA
          Length = 1949

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 386 ttccagcgattgttcggatt 405
           ||||||||||||||||||||
Sbjct: 454 ttccagcgattgttcggatt 435
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>gb|AC099765.1| Caenorhabditis briggsae cosmid CB031I14, complete sequence
          Length = 94665

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 127  ggagcaacaaaagaacagca 146
            ||||||||||||||||||||
Sbjct: 5473 ggagcaacaaaagaacagca 5454
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>gb|AC009218.7|AC009218 Drosophila melanogaster, chromosome 2R, region 57B-57B, BAC clone
             BACR33D17, complete sequence
          Length = 156753

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 386   ttccagcgattgttcggatt 405
             ||||||||||||||||||||
Sbjct: 62064 ttccagcgattgttcggatt 62045
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>gb|AC007837.4|AC007837 Drosophila melanogaster, chromosome 2R, region 57B2-B3, BAC clone
             BACR04I07, complete sequence
          Length = 123647

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 386   ttccagcgattgttcggatt 405
             ||||||||||||||||||||
Sbjct: 28958 ttccagcgattgttcggatt 28939
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>gb|AE003791.5| Drosophila melanogaster chromosome 2R, section 59 of 73 of the complete
              sequence
          Length = 263535

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 386    ttccagcgattgttcggatt 405
              ||||||||||||||||||||
Sbjct: 104906 ttccagcgattgttcggatt 104887
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>gb|AC099712.21| Mus musculus chromosome 1, clone RP23-400C10, complete sequence
          Length = 196059

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 373   aggtatgtacttcttccagc 392
             ||||||||||||||||||||
Sbjct: 46662 aggtatgtacttcttccagc 46643
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>emb|AL833781.5| Mouse DNA sequence from clone RP23-447J12 on chromosome 4, complete
             sequence
          Length = 165700

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 79    ttgtccctgagagctctata 98
             ||||||||||||||||||||
Sbjct: 20041 ttgtccctgagagctctata 20060


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,584,213
Number of Sequences: 3902068
Number of extensions: 3584213
Number of successful extensions: 75165
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 75075
Number of HSP's gapped (non-prelim): 82
length of query: 497
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 475
effective length of database: 17,147,199,772
effective search space: 8144919891700
effective search space used: 8144919891700
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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