ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd22l17
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
2dbj|AP005093.3| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
3dbj|AP005397.2| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
4dbj|AK073672.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 2e-12
5dbj|AP005636.2| Oryza sativa (japonica cultivar-group) genomic D... 78 3e-11
6gb|AC108224.6| Oryza sativa (japonica cultivar-group) chromosome... 48 0.026
7dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.026
8gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 48 0.026
9ref|XM_795253.1| PREDICTED: Strongylocentrotus purpuratus hypoth... 44 0.40
10dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 44 0.40
11gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence 42 1.6
12gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 42 1.6
13gb|AY740868.1| Elymus validus voucher H4100 clone 1 18S ribosoma... 42 1.6
14emb|AJ340882.1|HSA340882 Homo sapiens genomic sequence surroundi... 42 1.6
15gb|AY106879.1| Zea mays PCO082346 mRNA sequence 42 1.6
16gb|AC102081.15| Mus musculus chromosome 18, clone RP23-43H5, com... 40 6.3
17ref|XM_480190.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.3
18gb|AC159257.2| Mus musculus BAC clone RP24-86H20 from chromosome... 40 6.3
19ref|XM_748307.1| Aspergillus fumigatus Af293 hypothetical protei... 40 6.3
20emb|CR589948.8| Zebrafish DNA sequence from clone CH211-160P12 i... 40 6.3
21dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, compl... 40 6.3
22dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 40 6.3
23dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
24dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
25gb|AC109363.3| Homo sapiens BAC clone RP11-799C4 from 2, complet... 40 6.3
26gb|AC011322.29| Homo sapiens 3 BAC RP11-21N3 (Roswell Park Cance... 40 6.3
27dbj|AP004124.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
28dbj|AP004698.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
29emb|BX545913.21| Zebrafish DNA sequence from clone DKEY-208P1 in... 40 6.3
30emb|CT573028.11| M.truncatula DNA sequence from clone MTH2-51N20... 40 6.3
31gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete... 40 6.3
32gb|AC151719.3| Mus musculus BAC clone RP23-147H4 from chromosome... 40 6.3
33gb|DQ114465.1| Drosophila simulans #251.175 zen gene, partial se... 40 6.3
34gb|DQ114464.1| Drosophila simulans #251.007 zen gene, partial se... 40 6.3
35gb|DQ114463.1| Drosophila simulans #251.009 zen gene, partial se... 40 6.3
36gb|DQ114462.1| Drosophila simulans #251.001 zen gene, partial se... 40 6.3
37gb|DQ114461.1| Drosophila simulans #251.178 zen gene, partial se... 40 6.3
38gb|DQ114460.1| Drosophila simulans #251.169 zen gene, partial se... 40 6.3
39gb|DQ114459.1| Drosophila simulans #251.006 zen gene, partial se... 40 6.3
40gb|DQ114458.1| Drosophila simulans #251.005 zen gene, partial se... 40 6.3
41gb|DQ114457.1| Drosophila simulans #251.177 zen gene, partial se... 40 6.3
42emb|AL645857.11| Mouse DNA sequence from clone RP23-167N2 on chr... 40 6.3 
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 65/73 (89%)
 Strand = Plus / Plus

                                                                            
Query: 226      gcacgctgccgtgggggttggtgttggccttgggctccgagtagtccatcaccgtcgata 285
                |||||| |||| ||||||||||||||| |||||| || |||||||||  ||||||||| |
Sbjct: 14595184 gcacgccgccgcgggggttggtgttgggcttgggatcggagtagtccgccaccgtcgaca 14595243

                             
Query: 286      ccatcccatcgcc 298
                |||||||||||||
Sbjct: 14595244 ccatcccatcgcc 14595256



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 60/67 (89%)
 Strand = Plus / Minus

                                                                            
Query: 226      gcacgctgccgtgggggttggtgttggccttgggctccgagtagtccatcaccgtcgata 285
                |||||| |||| ||||||||||||||| |||||| ||||||||||||  ||||||||| |
Sbjct: 14786749 gcacgccgccgcgggggttggtgttggtcttgggatccgagtagtccgccaccgtcgaca 14786690

                       
Query: 286      ccatccc 292
                |||||||
Sbjct: 14786689 ccatccc 14786683
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>dbj|AP005093.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1294_G06
          Length = 115468

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 65/73 (89%)
 Strand = Plus / Plus

                                                                         
Query: 226   gcacgctgccgtgggggttggtgttggccttgggctccgagtagtccatcaccgtcgata 285
             |||||| |||| ||||||||||||||| |||||| || |||||||||  ||||||||| |
Sbjct: 93473 gcacgccgccgcgggggttggtgttgggcttgggatcggagtagtccgccaccgtcgaca 93532

                          
Query: 286   ccatcccatcgcc 298
             |||||||||||||
Sbjct: 93533 ccatcccatcgcc 93545
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>dbj|AP005397.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0643D11
          Length = 137525

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 65/73 (89%)
 Strand = Plus / Plus

                                                                         
Query: 226   gcacgctgccgtgggggttggtgttggccttgggctccgagtagtccatcaccgtcgata 285
             |||||| |||| ||||||||||||||| |||||| || |||||||||  ||||||||| |
Sbjct: 16851 gcacgccgccgcgggggttggtgttgggcttgggatcggagtagtccgccaccgtcgaca 16910

                          
Query: 286   ccatcccatcgcc 298
             |||||||||||||
Sbjct: 16911 ccatcccatcgcc 16923
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>dbj|AK073672.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033054E07, full
           insert sequence
          Length = 690

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 65/73 (89%)
 Strand = Plus / Minus

                                                                       
Query: 226 gcacgctgccgtgggggttggtgttggccttgggctccgagtagtccatcaccgtcgata 285
           |||||| |||| ||||||||||||||| |||||| || |||||||||  ||||||||| |
Sbjct: 233 gcacgccgccgcgggggttggtgttgggcttgggatcggagtagtccgccaccgtcgaca 174

                        
Query: 286 ccatcccatcgcc 298
           |||||||||||||
Sbjct: 173 ccatcccatcgcc 161
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>dbj|AP005636.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0707C02
          Length = 163609

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 60/67 (89%)
 Strand = Plus / Minus

                                                                         
Query: 226   gcacgctgccgtgggggttggtgttggccttgggctccgagtagtccatcaccgtcgata 285
             |||||| |||| ||||||||||||||| |||||| ||||||||||||  ||||||||| |
Sbjct: 72138 gcacgccgccgcgggggttggtgttggtcttgggatccgagtagtccgccaccgtcgaca 72079

                    
Query: 286   ccatccc 292
             |||||||
Sbjct: 72078 ccatccc 72072
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>gb|AC108224.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0038F07, complete sequence
          Length = 175703

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 338   gcgccaccgcccgggcccgtagcg 361
             ||||||||||||||||||||||||
Sbjct: 72500 gcgccaccgcccgggcccgtagcg 72523
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                        
Query: 338      gcgccaccgcccgggcccgtagcg 361
                ||||||||||||||||||||||||
Sbjct: 19353949 gcgccaccgcccgggcccgtagcg 19353972
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                        
Query: 338      gcgccaccgcccgggcccgtagcg 361
                ||||||||||||||||||||||||
Sbjct: 19513498 gcgccaccgcccgggcccgtagcg 19513521
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>ref|XM_795253.1| PREDICTED: Strongylocentrotus purpuratus hypothetical protein
            LOC585566 (LOC585566), partial mRNA
          Length = 2058

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                          
Query: 422  gagaagagccgcgacgaggatgatggcgag 451
            ||||||||| |||| |||||||||||||||
Sbjct: 1906 gagaagagcggcgatgaggatgatggcgag 1935
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 210     tcctccggcgcggcgggcacgc 231
               ||||||||||||||||||||||
Sbjct: 3168210 tcctccggcgcggcgggcacgc 3168231
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>gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence
          Length = 1395069

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 214     ccggcgcggcgggcacgctgccgtg 238
               |||||||||||||||||| ||||||
Sbjct: 1302543 ccggcgcggcgggcacgcagccgtg 1302567
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>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                                
Query: 219     gcggcgggcacgctgccgtgggggttggtgttg 251
               |||||||||||| |||||  |||||||||||||
Sbjct: 1807241 gcggcgggcacggtgccgaaggggttggtgttg 1807273
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>gb|AY740868.1| Elymus validus voucher H4100 clone 1 18S ribosomal RNA gene,
           partial sequence; 5.8S ribosomal RNA gene, complete
           sequence; and 28S ribosomal RNA gene, partial sequence
          Length = 700

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 393 tccaccgccccttgcgagaag 413
           |||||||||||||||||||||
Sbjct: 502 tccaccgccccttgcgagaag 482
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>emb|AJ340882.1|HSA340882 Homo sapiens genomic sequence surrounding NotI site, clone
           NR5-CO7RS
          Length = 737

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 235 cgtgggggttggtgttggcct 255
           |||||||||||||||||||||
Sbjct: 487 cgtgggggttggtgttggcct 507
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>gb|AY106879.1| Zea mays PCO082346 mRNA sequence
          Length = 610

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 57/69 (82%)
 Strand = Plus / Minus

                                                                       
Query: 185 tcagtgccacggcggcgaggtggggtcctccggcgcggcgggcacgctgccgtgggggtt 244
           |||||||  ||||||||||| |||||| |||||||  | |  || || |||||||| |||
Sbjct: 258 tcagtgcgtcggcggcgaggaggggtcgtccggcgacgggaccatgccgccgtgggtgtt 199

                    
Query: 245 ggtgttggc 253
           |||||||||
Sbjct: 198 ggtgttggc 190
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>gb|AC102081.15| Mus musculus chromosome 18, clone RP23-43H5, complete sequence
          Length = 245125

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 289    tcccatcgccctccttctgctcct 312
              ||||||| ||||||||||||||||
Sbjct: 141545 tcccatctccctccttctgctcct 141568
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>ref|XM_480190.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 864

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 190 gccacggcggcgaggtggggtcctccgg 217
           ||||| |||||||||||||| |||||||
Sbjct: 683 gccaccgcggcgaggtggggccctccgg 710
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>gb|AC159257.2| Mus musculus BAC clone RP24-86H20 from chromosome 5, complete
            sequence
          Length = 202099

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 106  ggcaggagggaggagagcag 125
            ||||||||||||||||||||
Sbjct: 6354 ggcaggagggaggagagcag 6335
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>ref|XM_748307.1| Aspergillus fumigatus Af293 hypothetical protein (Afu5g12520)
           partial mRNA
          Length = 1482

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 432 gcgacgaggatgatggcgag 451
           ||||||||||||||||||||
Sbjct: 638 gcgacgaggatgatggcgag 619
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>emb|CR589948.8| Zebrafish DNA sequence from clone CH211-160P12 in linkage group 15,
              complete sequence
          Length = 162791

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 82     accaactcatcaaagattta 101
              ||||||||||||||||||||
Sbjct: 105099 accaactcatcaaagattta 105118
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>dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, complete genome
          Length = 4171146

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 309     tcctgcaaccgggcgccgcggagg 332
               ||||||||| ||||||||||||||
Sbjct: 1187454 tcctgcaacagggcgccgcggagg 1187477
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 338     gcgccaccgcccgggcccgt 357
               ||||||||||||||||||||
Sbjct: 1545562 gcgccaccgcccgggcccgt 1545581
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 190     gccacggcggcgaggtggggtcctccgg 217
               ||||| |||||||||||||| |||||||
Sbjct: 3371807 gccaccgcggcgaggtggggccctccgg 3371834
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 298      cctccttctgctcctgcaac 317
                ||||||||||||||||||||
Sbjct: 23684532 cctccttctgctcctgcaac 23684513
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>gb|AC109363.3| Homo sapiens BAC clone RP11-799C4 from 2, complete sequence
          Length = 48994

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 108   caggagggaggagagcagcc 127
             ||||||||||||||||||||
Sbjct: 10744 caggagggaggagagcagcc 10725
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>gb|AC011322.29| Homo sapiens 3 BAC RP11-21N3 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 69411

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 5     gttgtacagatggggaaacg 24
             ||||||||||||||||||||
Sbjct: 38350 gttgtacagatggggaaacg 38331
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>dbj|AP004124.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1669_F01
          Length = 140019

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 298    cctccttctgctcctgcaac 317
              ||||||||||||||||||||
Sbjct: 125632 cctccttctgctcctgcaac 125613
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>dbj|AP004698.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
            clone:P0498E12
          Length = 153523

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 190  gccacggcggcgaggtggggtcctccgg 217
            ||||| |||||||||||||| |||||||
Sbjct: 5226 gccaccgcggcgaggtggggccctccgg 5253
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>emb|BX545913.21| Zebrafish DNA sequence from clone DKEY-208P1 in linkage group 17,
             complete sequence
          Length = 188037

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 108   caggagggaggagagcagcc 127
             ||||||||||||||||||||
Sbjct: 48787 caggagggaggagagcagcc 48768
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>emb|CT573028.11| M.truncatula DNA sequence from clone MTH2-51N20 on chromosome 3, complete
              sequence
          Length = 116350

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 66     acaattctccagatcaacca 85
              ||||||||||||||||||||
Sbjct: 101094 acaattctccagatcaacca 101075
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>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 215    cggcgcggcgggcacgctgc 234
              ||||||||||||||||||||
Sbjct: 162035 cggcgcggcgggcacgctgc 162054
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>gb|AC151719.3| Mus musculus BAC clone RP23-147H4 from chromosome 5, complete sequence
          Length = 221314

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 106    ggcaggagggaggagagcag 125
              ||||||||||||||||||||
Sbjct: 129940 ggcaggagggaggagagcag 129921
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>gb|DQ114465.1| Drosophila simulans #251.175 zen gene, partial sequence
          Length = 1254

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 243 ttggtgttggccttgggctc 262
           ||||||||||||||||||||
Sbjct: 566 ttggtgttggccttgggctc 547
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>gb|DQ114464.1| Drosophila simulans #251.007 zen gene, partial sequence
          Length = 1254

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 243 ttggtgttggccttgggctc 262
           ||||||||||||||||||||
Sbjct: 566 ttggtgttggccttgggctc 547
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>gb|DQ114463.1| Drosophila simulans #251.009 zen gene, partial sequence
          Length = 1257

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 243 ttggtgttggccttgggctc 262
           ||||||||||||||||||||
Sbjct: 569 ttggtgttggccttgggctc 550
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>gb|DQ114462.1| Drosophila simulans #251.001 zen gene, partial sequence
          Length = 1257

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 243 ttggtgttggccttgggctc 262
           ||||||||||||||||||||
Sbjct: 569 ttggtgttggccttgggctc 550
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>gb|DQ114461.1| Drosophila simulans #251.178 zen gene, partial sequence
          Length = 1257

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 243 ttggtgttggccttgggctc 262
           ||||||||||||||||||||
Sbjct: 569 ttggtgttggccttgggctc 550
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>gb|DQ114460.1| Drosophila simulans #251.169 zen gene, partial sequence
          Length = 1257

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 243 ttggtgttggccttgggctc 262
           ||||||||||||||||||||
Sbjct: 569 ttggtgttggccttgggctc 550
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>gb|DQ114459.1| Drosophila simulans #251.006 zen gene, partial sequence
          Length = 1257

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 243 ttggtgttggccttgggctc 262
           ||||||||||||||||||||
Sbjct: 569 ttggtgttggccttgggctc 550
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>gb|DQ114458.1| Drosophila simulans #251.005 zen gene, partial sequence
          Length = 1257

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 243 ttggtgttggccttgggctc 262
           ||||||||||||||||||||
Sbjct: 569 ttggtgttggccttgggctc 550
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>gb|DQ114457.1| Drosophila simulans #251.177 zen gene, partial sequence
          Length = 1254

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 243 ttggtgttggccttgggctc 262
           ||||||||||||||||||||
Sbjct: 566 ttggtgttggccttgggctc 547
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>emb|AL645857.11| Mouse DNA sequence from clone RP23-167N2 on chromosome X, complete
             sequence
          Length = 137904

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 288   atcccatcgccctccttctgctcc 311
             |||||||| |||||||||||||||
Sbjct: 67417 atcccatccccctccttctgctcc 67394


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,302,841
Number of Sequences: 3902068
Number of extensions: 3302841
Number of successful extensions: 73059
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 72430
Number of HSP's gapped (non-prelim): 629
length of query: 465
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 443
effective length of database: 17,147,199,772
effective search space: 7596209498996
effective search space used: 7596209498996
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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