ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd23a16 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF543198.1| Hordeum vulgare subsp. vulgare phosphate transporter 6 (Pht1-6) gene, complete cds Length = 2876 Score = 313 bits (158), Expect = 1e-82 Identities = 202/213 (94%), Gaps = 5/213 (2%) Strand = Plus / Minus Query: 1 aattataacatggnngtaactctgtacncatgacaatagtagtattgntgttgtactcga 60 ||||||||||||| ||||||| || ||||||||||||||||||| |||||||||| | Sbjct: 2692 aattataacatggag--aactctg-acacatgacaatagtagtattgttgttgtactc-a 2637 Query: 61 ctcctgagttgaacgtcccaacgaagaaaaagaaaacacccatacatgccatccaaacct 120 |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| Sbjct: 2636 ctcctgagttgaacgtcccaaccaagaaaaagaaaacacccatacat-ccatccaaacct 2578 Query: 121 gcagagtataccaccggtagcatatactggtatatctgacgtacggcgacgtctcacacg 180 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 2577 gcagagtataccaccggtagcatatactagtatatctgacgtacggcgacgtctcacacg 2518 Query: 181 ggcaccgtcctggcgtgcgtcgccggcgccggc 213 ||||||||||||||||||||||||||||||||| Sbjct: 2517 ggcaccgtcctggcgtgcgtcgccggcgccggc 2485
>emb|AL732396.11| Mouse DNA sequence from clone RP23-93M14 on chromosome X, complete sequence Length = 173254 Score = 44.1 bits (22), Expect = 0.17 Identities = 22/22 (100%) Strand = Plus / Plus Query: 86 gaaaaagaaaacacccatacat 107 |||||||||||||||||||||| Sbjct: 100423 gaaaaagaaaacacccatacat 100444
>gb|AC159421.1| Trypanosoma brucei chromosome 7 clone RPCI93-26A24, complete sequence Length = 158050 Score = 42.1 bits (21), Expect = 0.68 Identities = 21/21 (100%) Strand = Plus / Plus Query: 84 aagaaaaagaaaacacccata 104 ||||||||||||||||||||| Sbjct: 129907 aagaaaaagaaaacacccata 129927
>gb|CP000070.1| Trypanosoma brucei chromosome 7, complete sequence Length = 2205233 Score = 42.1 bits (21), Expect = 0.68 Identities = 21/21 (100%) Strand = Plus / Minus Query: 84 aagaaaaagaaaacacccata 104 ||||||||||||||||||||| Sbjct: 1180216 aagaaaaagaaaacacccata 1180196
>emb|BX470177.14| Zebrafish DNA sequence from clone DKEY-31F3 in linkage group 3, complete sequence Length = 59444 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 aaaaagaaaacacccataca 106 |||||||||||||||||||| Sbjct: 51280 aaaaagaaaacacccataca 51261
>emb|AL031294.1|HS885E17 Human DNA sequence from clone RP5-885E17 on chromosome 1p33-34.1 Contains the 5' end of a novel gene, complete sequence Length = 83957 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 caacgaagaaaaagaaaaca 98 |||||||||||||||||||| Sbjct: 12458 caacgaagaaaaagaaaaca 12477
>emb|AL645571.18| Mouse DNA sequence from clone RP23-39H1 on chromosome 11 Contains a general transcription factor II A, 1 (Gtf2a1) pseudogene, the 3' end of the Pkd1l1 gene for polycystic kidney disease 1 like 1 and a heterogeneous nuclear ribonucleoprotein A3 (Hnrpa3) pseudogene, complete sequence Length = 235198 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 aaaaagaaaacacccataca 106 |||||||||||||||||||| Sbjct: 106194 aaaaagaaaacacccataca 106175
>emb|BX901956.4| Zebrafish DNA sequence from clone CH211-284C12 in linkage group 3, complete sequence Length = 197042 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 aaaaagaaaacacccataca 106 |||||||||||||||||||| Sbjct: 23219 aaaaagaaaacacccataca 23238
>gb|AC096543.2| Homo sapiens chromosome 1 clone RP11-335E6, complete sequence Length = 162837 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 aaaacacccatacatgccat 112 |||||||||||||||||||| Sbjct: 127396 aaaacacccatacatgccat 127415
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 192 ggcgtgcgtcgccggcgccg 211 |||||||||||||||||||| Sbjct: 722649 ggcgtgcgtcgccggcgccg 722668 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,937,002 Number of Sequences: 3902068 Number of extensions: 1937002 Number of successful extensions: 285751 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 285589 Number of HSP's gapped (non-prelim): 160 length of query: 213 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 191 effective length of database: 17,147,199,772 effective search space: 3275115156452 effective search space used: 3275115156452 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
