ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbasd22l13 |
|---|---|
| Clone Library Name | barley_pub |
>CSN6A_ARATH (Q8W206) COP9 signalosome complex subunit 6a (Signalosome subunit| 6a) (AtCSN6a) Length = 317 Score = 198 bits (504), Expect = 1e-50 Identities = 103/138 (74%), Positives = 112/138 (81%) Frame = -3 Query: 655 ETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRVRVIQQYLGAMQKGD 476 ETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSR+RV+ Q L AMQKGD Sbjct: 181 ETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLYQNLAAMQKGD 240 Query: 475 IPLDNXXXXXXXXXXXXLPAMESEKFQDDFLTEYNDTLLMTYLAMFTNCSSTMNELVEKF 296 DN LPAMESE+FQD+FL EYND LL+TYLAM TNCSS MNE+V+KF Sbjct: 241 KSCDNSVLRQVSSLLRRLPAMESERFQDNFLMEYNDKLLITYLAMITNCSSNMNEMVDKF 300 Query: 295 NTTYERSPARRGGRGAFM 242 NT Y+R+ RRGGR AFM Sbjct: 301 NTAYDRN-TRRGGRTAFM 317
>CSN6B_ARATH (Q8W1P0) COP9 signalosome complex subunit 6b (Signalosome subunit| 6b) (AtCSN6b) Length = 317 Score = 192 bits (488), Expect = 7e-49 Identities = 98/138 (71%), Positives = 112/138 (81%) Frame = -3 Query: 655 ETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRVRVIQQYLGAMQKGD 476 ETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSR+RV+ Q++ AMQKGD Sbjct: 181 ETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLYQHIVAMQKGD 240 Query: 475 IPLDNXXXXXXXXXXXXLPAMESEKFQDDFLTEYNDTLLMTYLAMFTNCSSTMNELVEKF 296 P +N LPA ESEKF ++FL EYND LLM+YLAM TNC+S MNE+V+KF Sbjct: 241 KPCENSVLRQVSSLLRSLPAAESEKFNENFLMEYNDKLLMSYLAMITNCTSNMNEVVDKF 300 Query: 295 NTTYERSPARRGGRGAFM 242 NT Y++ +RRGGR AFM Sbjct: 301 NTAYDKH-SRRGGRTAFM 317
>CSN6_XENLA (Q6NUC2) COP9 signalosome complex subunit 6 (Signalosome subunit 6)| Length = 318 Score = 106 bits (264), Expect = 7e-23 Identities = 58/136 (42%), Positives = 80/136 (58%) Frame = -3 Query: 652 TVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRVRVIQQYLGAMQKGDI 473 T EAERI VDHVA + + G +T +A HL HSAIKML+SRVR+I +Y+ A + G++ Sbjct: 183 TEEAERIGVDHVARMTATGSGENST-VAEHLIAQHSAIKMLHSRVRLILEYVRAAEGGEV 241 Query: 472 PLDNXXXXXXXXXXXXLPAMESEKFQDDFLTEYNDTLLMTYLAMFTNCSSTMNELVEKFN 293 P ++ LP + ++KF+ DF + ND LM+YL T +TMN+ V KFN Sbjct: 242 PFNHEILREASALCHCLPVLSTDKFKTDFYDQCNDVGLMSYLGTITKTCNTMNQFVNKFN 301 Query: 292 TTYERSPARRGGRGAF 245 Y+R R RG F Sbjct: 302 ILYDRQGIGRRMRGLF 317
>CSN6_MOUSE (O88545) COP9 signalosome complex subunit 6 (Signalosome subunit 6)| (SGN6) (JAB1-containing signalosome subunit 6) Length = 324 Score = 105 bits (261), Expect = 2e-22 Identities = 57/136 (41%), Positives = 79/136 (58%) Frame = -3 Query: 652 TVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRVRVIQQYLGAMQKGDI 473 T EAERI VDHVA + + G +T +A HL HSAIKML+SRV++I +Y+ A + G++ Sbjct: 189 TEEAERIGVDHVARMTATGSGENST-VAEHLIAQHSAIKMLHSRVKLILEYVKASEAGEV 247 Query: 472 PLDNXXXXXXXXXXXXLPAMESEKFQDDFLTEYNDTLLMTYLAMFTNCSSTMNELVEKFN 293 P ++ LP + ++KF+ DF + ND LM YL T +TMN+ V KFN Sbjct: 248 PFNHEILREAYALCHCLPVLSTDKFKTDFYDQCNDVGLMAYLGTITKTCNTMNQFVNKFN 307 Query: 292 TTYERSPARRGGRGAF 245 Y+R R RG F Sbjct: 308 VLYDRQGIGRRMRGLF 323
>CSN6_HUMAN (Q7L5N1) COP9 signalosome complex subunit 6 (Signalosome subunit 6)| (SGN6) (JAB1-containing signalosome subunit 6) (Vpr-interacting protein) (hVIP) (MOV34 homolog) Length = 327 Score = 105 bits (261), Expect = 2e-22 Identities = 57/136 (41%), Positives = 79/136 (58%) Frame = -3 Query: 652 TVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRVRVIQQYLGAMQKGDI 473 T EAERI VDHVA + + G +T +A HL HSAIKML+SRV++I +Y+ A + G++ Sbjct: 192 TEEAERIGVDHVARMTATGSGENST-VAEHLIAQHSAIKMLHSRVKLILEYVKASEAGEV 250 Query: 472 PLDNXXXXXXXXXXXXLPAMESEKFQDDFLTEYNDTLLMTYLAMFTNCSSTMNELVEKFN 293 P ++ LP + ++KF+ DF + ND LM YL T +TMN+ V KFN Sbjct: 251 PFNHEILREAYALCHCLPVLSTDKFKTDFYDQCNDVGLMAYLGTITKTCNTMNQFVNKFN 310 Query: 292 TTYERSPARRGGRGAF 245 Y+R R RG F Sbjct: 311 VLYDRQGIGRRMRGLF 326
>CSN6_DROME (Q9VCY3) COP9 signalosome complex subunit 6 (Signalosome subunit 6)| (Dch6) Length = 341 Score = 90.5 bits (223), Expect = 4e-18 Identities = 49/136 (36%), Positives = 75/136 (55%) Frame = -3 Query: 652 TVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRVRVIQQYLGAMQKGDI 473 T EAERI VDHVA + ++ G + +A HL SAIKMLN+R++++ QY+ ++ G + Sbjct: 206 TEEAERIGVDHVARMTSNESGEKSV-VAEHLVAQDSAIKMLNTRIKIVLQYIRDVEAGKL 264 Query: 472 PLDNXXXXXXXXXXXXLPAMESEKFQDDFLTEYNDTLLMTYLAMFTNCSSTMNELVEKFN 293 + LP M+ FQ++F T+ ND L++YL T + M+ V KFN Sbjct: 265 RANQEILREAYALCHRLPVMQVPAFQEEFYTQCNDVGLISYLGTLTKGCNDMHHFVNKFN 324 Query: 292 TTYERSPARRGGRGAF 245 Y+R + R RG + Sbjct: 325 MLYDRQGSARRMRGLY 340
>CSN6B_BRAOL (P68357) COP9 signalosome complex subunit 6b (Signalosome subunit| 6b) (Fragments) Length = 58 Score = 37.7 bits (86), Expect(2) = 0.011 Identities = 16/23 (69%), Positives = 20/23 (86%) Frame = -3 Query: 550 HSAIKMLNSRVRVIQQYLGAMQK 482 H+ KMLNSR+RV+ QYLG+MQK Sbjct: 36 HAQKKMLNSRIRVLHQYLGSMQK 58 Score = 20.8 bits (42), Expect(2) = 0.011 Identities = 9/17 (52%), Positives = 12/17 (70%) Frame = -1 Query: 624 IMLPI*NHLTVALQQLN 574 +ML I +HLT AL +N Sbjct: 6 VMLNISDHLTKALMDIN 22
>IF35_HUMAN (O00303) Eukaryotic translation initiation factor 3 subunit 5| (eIF-3 epsilon) (eIF3 p47 subunit) (eIF3f) Length = 357 Score = 38.9 bits (89), Expect = 0.014 Identities = 26/112 (23%), Positives = 46/112 (41%) Frame = -3 Query: 646 EAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRVRVIQQYLGAMQKGDIPL 467 + ERI VD + +K + L++ L + A + + + QY + G + Sbjct: 243 DTERIGVDLI--MKTCFSPNRVIGLSSDLQQVGGASARIQDALSTVLQYAEDVLSGKVSA 300 Query: 466 DNXXXXXXXXXXXXLPAMESEKFQDDFLTEYNDTLLMTYLAMFTNCSSTMNE 311 DN +P + + F+ + ND L++TYLA T +NE Sbjct: 301 DNTVGRFLMSLVNQVPKIVPDDFETMLNSNINDLLMVTYLANLTQSQIALNE 352
>IF35_MOUSE (Q9DCH4) Eukaryotic translation initiation factor 3 subunit 5| (eIF-3 epsilon) (eIF3 p47 subunit) (eIF3f) Length = 361 Score = 38.9 bits (89), Expect = 0.014 Identities = 26/112 (23%), Positives = 46/112 (41%) Frame = -3 Query: 646 EAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRVRVIQQYLGAMQKGDIPL 467 + ERI VD + +K + L++ L + A + + + QY + G + Sbjct: 247 DTERIGVDLI--MKTCFSPNRVIGLSSDLQQVGGASARIQDALSTVLQYAEDVLSGKVSA 304 Query: 466 DNXXXXXXXXXXXXLPAMESEKFQDDFLTEYNDTLLMTYLAMFTNCSSTMNE 311 DN +P + + F+ + ND L++TYLA T +NE Sbjct: 305 DNTVGRFLMSLVNQVPKIVPDDFETMLNSNINDLLMVTYLANLTQSQIALNE 356
>CSN6_CAEEL (Q95PZ0) COP9 signalosome complex subunit 6 (Signalosome subunit 6)| Length = 426 Score = 36.6 bits (83), Expect = 0.068 Identities = 19/58 (32%), Positives = 30/58 (51%) Frame = -3 Query: 646 EAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRVRVIQQYLGAMQKGDI 473 E+ER+ V+H+A L G + H +A+ ML +RV +I YL +Q G + Sbjct: 178 ESERVGVNHIAKLSTKHGKDGKSVGKKHAEAQDAAMSMLQNRVDLIVAYLEKVQDGTL 235
>L_MEASE (P12576) Large structural protein (Protein L) (Transcriptase)| (Replicase) [Includes: RNA-directed RNA polymerase (EC 2.7.7.48); mRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.56); mRNA guanylyltransferase (EC 2.7.7.-)] Length = 2183 Score = 32.0 bits (71), Expect = 1.7 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 1/72 (1%) Frame = +3 Query: 51 INPGTSSH*SNPERIRRLK-SLRYCRT*LIARKKLRLDMGTIFKISARITSTKTSAAAGR 227 ++P SS NP + SL Y R I + +LR+D G IF A + ++ + Sbjct: 1650 LSPAGSSWNINPIIVDHYSCSLTYLRRGSIKQIRLRVDPGFIFDALAEVNVSQPKIGSNN 1709 Query: 228 LEPIYMKAPRPP 263 + + +KA RPP Sbjct: 1710 ISNMSIKAFRPP 1721
>L_MEASA (P35975) Large structural protein (Protein L) (Transcriptase)| (Replicase) [Includes: RNA-directed RNA polymerase (EC 2.7.7.48); mRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.56); mRNA guanylyltransferase (EC 2.7.7.-)] Length = 2183 Score = 32.0 bits (71), Expect = 1.7 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 1/72 (1%) Frame = +3 Query: 51 INPGTSSH*SNPERIRRLK-SLRYCRT*LIARKKLRLDMGTIFKISARITSTKTSAAAGR 227 ++P SS NP + SL Y R I + +LR+D G IF A + ++ + Sbjct: 1650 LSPAGSSWNINPIIVDHYSCSLTYLRRGSIKQIRLRVDPGFIFDALAEVNVSQPKIGSNN 1709 Query: 228 LEPIYMKAPRPP 263 + + +KA RPP Sbjct: 1710 ISNMSIKAFRPP 1721
>TPX_YERPE (Q8ZE42) Probable thiol peroxidase (EC 1.11.1.-)| Length = 167 Score = 31.6 bits (70), Expect = 2.2 Identities = 31/94 (32%), Positives = 44/94 (46%) Frame = +3 Query: 213 AAAGRLEPIYMKAPRPPLLAGDLSYVVLNFSTNSFIVLEQFVNIAR*VMRRVSLYSVKKS 392 + AG+L I KA L+A DLS V L +SF + +NI + V SV+K Sbjct: 13 SVAGKLPQIGDKAKDFTLVAKDLSDVAL----SSFAGKRKVLNIFPSIDTGVCAASVRK- 67 Query: 393 SWNFSDSIAGSLLTRLETCLRSELSSGISPFCMA 494 + +AG L + C+ S+L S FC A Sbjct: 68 ----FNQLAGELENTVVLCISSDLPFAQSRFCGA 97
>POLG_HCVH4 (Q01404) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70)] (Fragment) Length = 519 Score = 30.0 bits (66), Expect = 6.3 Identities = 15/37 (40%), Positives = 21/37 (56%) Frame = +2 Query: 482 LLHGTKVLLDNTNPAIEHLDGTVYSCKMSSQLSCCRA 592 L HG +VL D N A +L G +S +S+ +SC A Sbjct: 150 LAHGVRVLEDGVNYATGNLPGCSFSIFLSALMSCLTA 186
>DENR_PONPY (Q5RFP5) Density-regulated protein (DRP)| Length = 198 Score = 29.6 bits (65), Expect = 8.3 Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 3/77 (3%) Frame = +2 Query: 104 EKSQILPDLTDCTQKIASRYGNYFQNLSTDN---QHQNLSCSRTVGTDLHESTSASSPGR 274 E + +PD+ C Q + + N F L+ +N Q +S + + E GR Sbjct: 42 EYCEYMPDVAKCRQWLEKNFPNEFAKLTVENSPKQEAGISEGQGTAGEEEEKKKQKRGGR 101 Query: 275 GSLIRGVKLLDQLVHCA 325 G + + K + Q V A Sbjct: 102 GQIKQKKKTVPQKVTIA 118
>DENR_HUMAN (O43583) Density-regulated protein (DRP) (DRP1 protein) (Smooth| muscle cell-associated protein 3) (SMAP-3) Length = 198 Score = 29.6 bits (65), Expect = 8.3 Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 3/77 (3%) Frame = +2 Query: 104 EKSQILPDLTDCTQKIASRYGNYFQNLSTDN---QHQNLSCSRTVGTDLHESTSASSPGR 274 E + +PD+ C Q + + N F L+ +N Q +S + + E GR Sbjct: 42 EYCEYMPDVAKCRQWLEKNFPNEFAKLTVENSPKQEAGISEGQGTAGEEEEKKKQKRGGR 101 Query: 275 GSLIRGVKLLDQLVHCA 325 G + + K + Q V A Sbjct: 102 GQIKQKKKTVPQKVTIA 118
>YS56_CAEEL (Q09378) Hypothetical protein ZK673.6| Length = 284 Score = 29.6 bits (65), Expect = 8.3 Identities = 14/21 (66%), Positives = 17/21 (80%), Gaps = 1/21 (4%) Frame = +2 Query: 86 REDKKIEKSQILPDLTD-CTQ 145 R KK+EK+QILPDL D CT+ Sbjct: 172 RRRKKVEKTQILPDLRDQCTK 192
>INT1_CANAL (P53705) Integrin alpha chain-like protein (Alpha-INT1)| Length = 1664 Score = 29.6 bits (65), Expect = 8.3 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 4/72 (5%) Frame = +2 Query: 86 REDK----KIEKSQILPDLTDCTQKIASRYGNYFQNLSTDNQHQNLSCSRTVGTDLHEST 253 RED + EKS IL D++ + I +YGN ++T + L+ R+ D S Sbjct: 607 REDNDDISRFEKSDILNDVSQTSDIIGDKYGNSSSEITT----KTLAPPRSDNNDKENSK 662 Query: 254 SASSPGRGSLIR 289 S P ++ Sbjct: 663 SLEDPANNESLQ 674 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 94,045,500 Number of Sequences: 219361 Number of extensions: 1937980 Number of successful extensions: 4892 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 4738 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4886 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6257125380 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
