ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd23a09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC129593.4| Mus musculus BAC clone RP24-142E6 from chromosome... 42 1.6
2gb|AC144768.2| Mus musculus BAC clone RP23-24K24 from chromosome... 42 1.6
3gb|AY063491.1| Mus musculus teashirt 3 (Tsh3) mRNA, complete cds 42 1.6
4ref|XM_753537.1| Ustilago maydis 521 hypothetical protein (UM024... 42 1.6
5gb|AC104100.6| Mus musculus BAC clone RP24-374D12 from chromosom... 42 1.6
6dbj|AK220396.1| Mus musculus mRNA for mKIAA1474 protein 42 1.6
7ref|NM_172298.1| Mus musculus teashirt zinc finger family member... 42 1.6
8ref|XM_218516.3| PREDICTED: Rattus norvegicus zinc finger protei... 42 1.6
9gb|AC151001.2| Mus musculus BAC clone RP23-45M16 from 7, complet... 42 1.6
10gb|DQ214101.1| Taeniopygia guttata clone 0064P0017C09 signal seq... 40 6.4
11gb|DQ214100.1| Taeniopygia guttata clone 0064P0016F04 signal seq... 40 6.4
12ref|XM_422829.1| PREDICTED: Gallus gallus similar to TRAP-comple... 40 6.4
13gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 40 6.4
14gb|AC159244.4| Mus musculus BAC clone RP24-309L4 from chromosome... 40 6.4
15gb|AC147784.3| Canis Familiaris, clone XX-25F3, complete sequence 40 6.4
16gb|AC129851.5| Homo sapiens X BAC RP11-669P14 (Roswell Park Canc... 40 6.4
17emb|AL627434.4| Human DNA sequence from clone RP11-299I7 on chro... 40 6.4
18emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 40 6.4
19emb|AL626785.26| Mouse DNA sequence from clone RP23-220F20 on ch... 40 6.4
20gb|AC104940.2| Homo sapiens chromosome 8, clone RP11-378J9, comp... 40 6.4
21gb|AC015522.6|AC015522 Homo sapiens chromosome 8, clone RP11-327... 40 6.4
22gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 40 6.4
23emb|BX935248.2| Gallus gallus finished cDNA, clone ChEST952j18 40 6.4
24dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
25emb|BX936255.1| Gallus gallus finished cDNA, clone ChEST958p17 40 6.4
26emb|BX936220.1| Gallus gallus finished cDNA, clone ChEST953c4 40 6.4
27emb|BX935333.1| Gallus gallus finished cDNA, clone ChEST950d16 40 6.4
28emb|BX935261.1| Gallus gallus finished cDNA, clone ChEST958c19 40 6.4
29emb|BX935252.1| Gallus gallus finished cDNA, clone ChEST958i4 40 6.4
30emb|BX935792.1| Gallus gallus finished cDNA, clone ChEST164n9 40 6.4
31emb|BX935245.1| Gallus gallus finished cDNA, clone ChEST952k24 40 6.4
32emb|BX935222.1| Gallus gallus finished cDNA, clone ChEST954m13 40 6.4
33emb|BX934097.1| Gallus gallus finished cDNA, clone ChEST60l9 40 6.4
34emb|BX932955.1| Gallus gallus finished cDNA, clone ChEST914n22 40 6.4
35emb|BX933663.1| Gallus gallus finished cDNA, clone ChEST949p15 40 6.4
36emb|BX933619.1| Gallus gallus finished cDNA, clone ChEST947j8 40 6.4
37gb|AC079816.31| Mus musculus strain C57BL/6J chromosome 11 clone... 40 6.4
38gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.4
39emb|AL713937.3|CNS07YPI Oryza sativa chromosome 12, . BAC OJ1103... 40 6.4
40emb|AL663091.13| Mouse DNA sequence from clone RP23-392P11 on ch... 40 6.4 
>gb|AC129593.4| Mus musculus BAC clone RP24-142E6 from chromosome 7, complete sequence
          Length = 210291

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 200    cggaagaaaccttctctggag 220
              |||||||||||||||||||||
Sbjct: 183606 cggaagaaaccttctctggag 183626
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>gb|AC144768.2| Mus musculus BAC clone RP23-24K24 from chromosome 7, complete sequence
          Length = 230675

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 200    cggaagaaaccttctctggag 220
              |||||||||||||||||||||
Sbjct: 224919 cggaagaaaccttctctggag 224899
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>gb|AY063491.1| Mus musculus teashirt 3 (Tsh3) mRNA, complete cds
          Length = 5009

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 200  cggaagaaaccttctctggag 220
            |||||||||||||||||||||
Sbjct: 1093 cggaagaaaccttctctggag 1113
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>ref|XM_753537.1| Ustilago maydis 521 hypothetical protein (UM02483.1) partial mRNA
          Length = 3201

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 218  gaggaggaggccgagagaagg 238
            |||||||||||||||||||||
Sbjct: 2434 gaggaggaggccgagagaagg 2454
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>gb|AC104100.6| Mus musculus BAC clone RP24-374D12 from chromosome 7, complete sequence
          Length = 139125

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 200   cggaagaaaccttctctggag 220
             |||||||||||||||||||||
Sbjct: 52860 cggaagaaaccttctctggag 52880
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>dbj|AK220396.1| Mus musculus mRNA for mKIAA1474 protein
          Length = 4891

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 200 cggaagaaaccttctctggag 220
           |||||||||||||||||||||
Sbjct: 964 cggaagaaaccttctctggag 984
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>ref|NM_172298.1| Mus musculus teashirt zinc finger family member 3 (Tshz3), mRNA
          Length = 5009

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 200  cggaagaaaccttctctggag 220
            |||||||||||||||||||||
Sbjct: 1093 cggaagaaaccttctctggag 1113
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>ref|XM_218516.3| PREDICTED: Rattus norvegicus zinc finger protein 537 (predicted)
            (Zfp537_predicted), mRNA
          Length = 3714

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 200  cggaagaaaccttctctggag 220
            |||||||||||||||||||||
Sbjct: 983  cggaagaaaccttctctggag 1003
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>gb|AC151001.2| Mus musculus BAC clone RP23-45M16 from 7, complete sequence
          Length = 176698

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 200   cggaagaaaccttctctggag 220
             |||||||||||||||||||||
Sbjct: 12496 cggaagaaaccttctctggag 12516
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>gb|DQ214101.1| Taeniopygia guttata clone 0064P0017C09 signal sequence receptor
           gamma-like mRNA, complete sequence
          Length = 953

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 263 gaggatctgctgctgcaggtcttc 286
           ||||||||||||||||||| ||||
Sbjct: 85  gaggatctgctgctgcaggacttc 108
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>gb|DQ214100.1| Taeniopygia guttata clone 0064P0016F04 signal sequence receptor
           gamma-like mRNA, complete sequence
          Length = 949

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 263 gaggatctgctgctgcaggtcttc 286
           ||||||||||||||||||| ||||
Sbjct: 79  gaggatctgctgctgcaggacttc 102
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>ref|XM_422829.1| PREDICTED: Gallus gallus similar to TRAP-complex gamma subunit
           (LOC425027), mRNA
          Length = 1054

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 263 gaggatctgctgctgcaggtcttc 286
           ||||||||||||||||||| ||||
Sbjct: 88  gaggatctgctgctgcaggacttc 111
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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 262    cgaggatctgctgctgcagg 281
              ||||||||||||||||||||
Sbjct: 864386 cgaggatctgctgctgcagg 864367
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>gb|AC159244.4| Mus musculus BAC clone RP24-309L4 from chromosome 12, complete sequence
          Length = 216500

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 247   ggaggaagagctctccgagg 266
             ||||||||||||||||||||
Sbjct: 92534 ggaggaagagctctccgagg 92553
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>gb|AC147784.3| Canis Familiaris, clone XX-25F3, complete sequence
          Length = 176851

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 76     gaaacctttcgtgtgtgtgt 95
              ||||||||||||||||||||
Sbjct: 162534 gaaacctttcgtgtgtgtgt 162515
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>gb|AC129851.5| Homo sapiens X BAC RP11-669P14 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 166653

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 4     attgctctaatctctagtttatag 27
             |||||||| |||||||||||||||
Sbjct: 76713 attgctctgatctctagtttatag 76690
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>emb|AL627434.4| Human DNA sequence from clone RP11-299I7 on chromosome 10 Contains part
             of gene KIAA1010 and the 5' end of gene FLJ40792, complete
             sequence
          Length = 52314

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 77    aaacctttcgtgtgtgtgta 96
             ||||||||||||||||||||
Sbjct: 26861 aaacctttcgtgtgtgtgta 26842
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>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 262     cgaggatctgctgctgcagg 281
               ||||||||||||||||||||
Sbjct: 2183063 cgaggatctgctgctgcagg 2183044
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>emb|AL626785.26| Mouse DNA sequence from clone RP23-220F20 on chromosome 11 Contains a
              novel gene, the 3'  end of the Mmd gene for monocyte to
              macrophage differentiation-associated and the 3' end of the
              Hlf gene for hepatic leukemia factor, complete sequence
          Length = 172696

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 60     ccctaccaaaagaaaggaaa 79
              ||||||||||||||||||||
Sbjct: 140862 ccctaccaaaagaaaggaaa 140881
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>gb|AC104940.2| Homo sapiens chromosome 8, clone RP11-378J9, complete sequence
          Length = 215962

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 201   ggaagaaaccttctctggag 220
             ||||||||||||||||||||
Sbjct: 85817 ggaagaaaccttctctggag 85798
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>gb|AC015522.6|AC015522 Homo sapiens chromosome 8, clone RP11-327O12, complete sequence
          Length = 147026

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 201    ggaagaaaccttctctggag 220
              ||||||||||||||||||||
Sbjct: 142155 ggaagaaaccttctctggag 142174
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>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 262     cgaggatctgctgctgcagg 281
               ||||||||||||||||||||
Sbjct: 1756559 cgaggatctgctgctgcagg 1756540
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>emb|BX935248.2| Gallus gallus finished cDNA, clone ChEST952j18
          Length = 932

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 263 gaggatctgctgctgcaggtcttc 286
           ||||||||||||||||||| ||||
Sbjct: 73  gaggatctgctgctgcaggacttc 96
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 262      cgaggatctgctgctgcagg 281
                ||||||||||||||||||||
Sbjct: 21357896 cgaggatctgctgctgcagg 21357915
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>emb|BX936255.1| Gallus gallus finished cDNA, clone ChEST958p17
          Length = 905

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 263 gaggatctgctgctgcaggtcttc 286
           ||||||||||||||||||| ||||
Sbjct: 67  gaggatctgctgctgcaggacttc 90
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>emb|BX936220.1| Gallus gallus finished cDNA, clone ChEST953c4
          Length = 906

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 263 gaggatctgctgctgcaggtcttc 286
           ||||||||||||||||||| ||||
Sbjct: 51  gaggatctgctgctgcaggacttc 74
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>emb|BX935333.1| Gallus gallus finished cDNA, clone ChEST950d16
          Length = 905

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 263 gaggatctgctgctgcaggtcttc 286
           ||||||||||||||||||| ||||
Sbjct: 67  gaggatctgctgctgcaggacttc 90
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>emb|BX935261.1| Gallus gallus finished cDNA, clone ChEST958c19
          Length = 943

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 263 gaggatctgctgctgcaggtcttc 286
           ||||||||||||||||||| ||||
Sbjct: 88  gaggatctgctgctgcaggacttc 111
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>emb|BX935252.1| Gallus gallus finished cDNA, clone ChEST958i4
          Length = 1032

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 263 gaggatctgctgctgcaggtcttc 286
           ||||||||||||||||||| ||||
Sbjct: 51  gaggatctgctgctgcaggacttc 74
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>emb|BX935792.1| Gallus gallus finished cDNA, clone ChEST164n9
          Length = 1073

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 263 gaggatctgctgctgcaggtcttc 286
           ||||||||||||||||||| ||||
Sbjct: 89  gaggatctgctgctgcaggacttc 112
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>emb|BX935245.1| Gallus gallus finished cDNA, clone ChEST952k24
          Length = 1030

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 263 gaggatctgctgctgcaggtcttc 286
           ||||||||||||||||||| ||||
Sbjct: 64  gaggatctgctgctgcaggacttc 87
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>emb|BX935222.1| Gallus gallus finished cDNA, clone ChEST954m13
          Length = 903

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 263 gaggatctgctgctgcaggtcttc 286
           ||||||||||||||||||| ||||
Sbjct: 48  gaggatctgctgctgcaggacttc 71
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>emb|BX934097.1| Gallus gallus finished cDNA, clone ChEST60l9
          Length = 1096

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 263 gaggatctgctgctgcaggtcttc 286
           ||||||||||||||||||| ||||
Sbjct: 73  gaggatctgctgctgcaggacttc 96
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>emb|BX932955.1| Gallus gallus finished cDNA, clone ChEST914n22
          Length = 1022

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 263 gaggatctgctgctgcaggtcttc 286
           ||||||||||||||||||| ||||
Sbjct: 41  gaggatctgctgctgcaggacttc 64
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>emb|BX933663.1| Gallus gallus finished cDNA, clone ChEST949p15
          Length = 943

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 263 gaggatctgctgctgcaggtcttc 286
           ||||||||||||||||||| ||||
Sbjct: 88  gaggatctgctgctgcaggacttc 111
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>emb|BX933619.1| Gallus gallus finished cDNA, clone ChEST947j8
          Length = 877

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 263 gaggatctgctgctgcaggtcttc 286
           ||||||||||||||||||| ||||
Sbjct: 41  gaggatctgctgctgcaggacttc 64
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>gb|AC079816.31| Mus musculus strain C57BL/6J chromosome 11 clone rp23-220f20, complete
              sequence
          Length = 172680

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 60     ccctaccaaaagaaaggaaa 79
              ||||||||||||||||||||
Sbjct: 140851 ccctaccaaaagaaaggaaa 140870
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 262      cgaggatctgctgctgcagg 281
                ||||||||||||||||||||
Sbjct: 21284115 cgaggatctgctgctgcagg 21284134
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>emb|AL713937.3|CNS07YPI Oryza sativa chromosome 12, . BAC OJ1103_B10 of library Monsanto from
            chromosome 12 of cultivar Nipponbare of ssp. japonica of
            Oryza sativa (rice), complete sequence
          Length = 95132

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 262  cgaggatctgctgctgcagg 281
            ||||||||||||||||||||
Sbjct: 3382 cgaggatctgctgctgcagg 3363
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>emb|AL663091.13| Mouse DNA sequence from clone RP23-392P11 on chromosome 2, complete
              sequence
          Length = 196078

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 246    gggaggaagagctctccgag 265
              ||||||||||||||||||||
Sbjct: 168423 gggaggaagagctctccgag 168404


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,430,993
Number of Sequences: 3902068
Number of extensions: 4430993
Number of successful extensions: 65071
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 64908
Number of HSP's gapped (non-prelim): 163
length of query: 472
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 450
effective length of database: 17,147,199,772
effective search space: 7716239897400
effective search space used: 7716239897400
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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