ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd23a08 |
|---|---|
| Clone Library Name | barley_pub |
>SYV_RAT (Q04462) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 1264 Score = 49.7 bits (117), Expect = 2e-06 Identities = 28/71 (39%), Positives = 38/71 (53%) Frame = -3 Query: 291 SVYLQLQGALNA*VELXKXRKXRDEIQKXQHALSQKMXASGYREKAPPSVQEEXXXKLTA 112 S++LQLQG ++ EL K + R E Q+ L ++ ASGY K P VQE KL Sbjct: 1186 SIHLQLQGLVDPARELGKLQAKRSEAQRQAQRLQERRAASGYSAKVPLEVQEADEVKLQQ 1245 Query: 111 FFXQLRVIGEA 79 +LR + EA Sbjct: 1246 TEAELRKVDEA 1256
>SYV_ARATH (P93736) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 1108 Score = 48.1 bits (113), Expect = 5e-06 Identities = 25/82 (30%), Positives = 40/82 (48%) Frame = -3 Query: 306 VXKDXSVYLQLQGALNA*VELXKXRKXRDEIQKXQHALSQKMXASGYREKAPPSVQEEXX 127 V ++ VYL++ GA+N E K R E+QK + L + M S Y EK P +++E+ Sbjct: 1019 VNENLKVYLEVDGAINTEAEQEKIRNKIGELQKQKEKLQKMMSVSTYEEKVPANIKEDNA 1078 Query: 126 XKLTAFFXQLRVIGEAEKKLDA 61 KL + + +L A Sbjct: 1079 NKLAKILQEFDFFEKESARLAA 1100
>SYV_HUMAN (P26640) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) (Protein G7a) Length = 1264 Score = 47.8 bits (112), Expect = 7e-06 Identities = 28/71 (39%), Positives = 38/71 (53%) Frame = -3 Query: 291 SVYLQLQGALNA*VELXKXRKXRDEIQKXQHALSQKMXASGYREKAPPSVQEEXXXKLTA 112 S++LQLQG ++ EL K + R E Q+ L ++ ASGY K P VQE KL Sbjct: 1186 SIHLQLQGLVDPARELGKLQAKRVEAQRQAQRLRERRAASGYPVKVPLEVQEADEAKLQQ 1245 Query: 111 FFXQLRVIGEA 79 +LR + EA Sbjct: 1246 TEAELRKVDEA 1256
>SYV_MOUSE (Q9Z1Q9) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) (Protein G7a) Length = 1263 Score = 47.8 bits (112), Expect = 7e-06 Identities = 27/71 (38%), Positives = 37/71 (52%) Frame = -3 Query: 291 SVYLQLQGALNA*VELXKXRKXRDEIQKXQHALSQKMXASGYREKAPPSVQEEXXXKLTA 112 S++LQLQG ++ EL K + R E Q+ L ++ AS Y K P VQE KL Sbjct: 1185 SIHLQLQGLVDPARELGKLQAKRSEAQRQAQRLQERRAASSYSAKVPLEVQEADEAKLQQ 1244 Query: 111 FFXQLRVIGEA 79 +LR + EA Sbjct: 1245 TEAELRKVDEA 1255
>SYV_ACIAD (Q6F8F0) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 971 Score = 43.9 bits (102), Expect = 1e-04 Identities = 23/78 (29%), Positives = 44/78 (56%) Frame = -3 Query: 291 SVYLQLQGALNA*VELXKXRKXRDEIQKXQHALSQKMXASGYREKAPPSVQEEXXXKLTA 112 SV++ ++G ++ EL + +K D++QK ++ K+ G+ KAP +V E KL Sbjct: 894 SVFVPMKGLIDPKAELGRLQKDLDKVQKQHDQIASKLANEGFVAKAPAAVVEGEKVKLAE 953 Query: 111 FFXQLRVIGEAEKKLDAV 58 F QL I ++ +++ A+ Sbjct: 954 FADQLVKIKQSMEQIAAL 971
>SYV_FUGRU (P49696) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 1217 Score = 39.7 bits (91), Expect = 0.002 Identities = 21/71 (29%), Positives = 37/71 (52%) Frame = -3 Query: 291 SVYLQLQGALNA*VELXKXRKXRDEIQKXQHALSQKMXASGYREKAPPSVQEEXXXKLTA 112 +V + L+G ++ E+ K + +++K LS+K+ Y+EK P VQE+ KL Sbjct: 1139 TVNMMLKGLIDVEKEVPKLMGKKTDLEKQIEKLSEKISKGDYKEKVPVKVQEQDTEKLRQ 1198 Query: 111 FFXQLRVIGEA 79 +L + EA Sbjct: 1199 SQTELEKVKEA 1209
>SYV_BACLD (Q65GK8) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 880 Score = 35.8 bits (81), Expect = 0.028 Identities = 18/62 (29%), Positives = 31/62 (50%) Frame = -3 Query: 306 VXKDXSVYLQLQGALNA*VELXKXRKXRDEIQKXQHALSQKMXASGYREKAPPSVQEEXX 127 V + L L+G +N E+ + +K D++ K + +K+ G+ +KAP V EE Sbjct: 799 VVSGAELILPLEGLINIDEEISRLQKELDKLTKEVERVQKKLSNEGFMKKAPAHVIEEER 858 Query: 126 XK 121 K Sbjct: 859 AK 860
>SYV_CARHZ (Q3AF87) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 878 Score = 35.4 bits (80), Expect = 0.037 Identities = 20/73 (27%), Positives = 35/73 (47%) Frame = -3 Query: 306 VXKDXSVYLQLQGALNA*VELXKXRKXRDEIQKXQHALSQKMXASGYREKAPPSVQEEXX 127 V ++YL L+ ++ E + K ++ L+QK+ G+ KAP V + Sbjct: 795 VAAGVTIYLPLKDLIDLEKEKERLNKELKKVLAEIERLNQKLNNPGFLAKAPAEVVNKER 854 Query: 126 XKLTAFFXQLRVI 88 KLTAF+ + V+ Sbjct: 855 EKLTAFYREKEVL 867
>SYV_BACSU (Q05873) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 880 Score = 34.7 bits (78), Expect = 0.062 Identities = 18/62 (29%), Positives = 31/62 (50%) Frame = -3 Query: 306 VXKDXSVYLQLQGALNA*VELXKXRKXRDEIQKXQHALSQKMXASGYREKAPPSVQEEXX 127 V V L L+G +N E+ + +K D++ K + +K+ G+ +KAP V +E Sbjct: 799 VVSGAEVILPLEGLINIDEEIARLQKEFDKLTKEVERVQKKLGNEGFMKKAPAHVIDEER 858 Query: 126 XK 121 K Sbjct: 859 EK 860
>SYV_THEMA (Q9X2D7) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 865 Score = 34.7 bits (78), Expect = 0.062 Identities = 19/63 (30%), Positives = 32/63 (50%) Frame = -3 Query: 306 VXKDXSVYLQLQGALNA*VELXKXRKXRDEIQKXQHALSQKMXASGYREKAPPSVQEEXX 127 V ++ Y+ L G ++ E + ++ ++IQK L +K+ + EKAP V EE Sbjct: 785 VEEEIEAYVDLGGLIDFEKEKERLKQIMEKIQKEIDRLEKKLANKDFVEKAPEEVVEETK 844 Query: 126 XKL 118 KL Sbjct: 845 EKL 847
>SYV_GEOKA (Q5KWL3) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 880 Score = 31.2 bits (69), Expect = 0.69 Identities = 17/62 (27%), Positives = 28/62 (45%) Frame = -3 Query: 306 VXKDXSVYLQLQGALNA*VELXKXRKXRDEIQKXQHALSQKMXASGYREKAPPSVQEEXX 127 V + + L+G +N E+ + K D+ K + +K+ G+ KAP V EE Sbjct: 799 VVTGAELIMPLEGLINIEEEIKRLEKELDKWNKEVERVEKKLANEGFLAKAPAHVVEEER 858 Query: 126 XK 121 K Sbjct: 859 RK 860
>SYV_BACST (P11931) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 880 Score = 31.2 bits (69), Expect = 0.69 Identities = 17/62 (27%), Positives = 28/62 (45%) Frame = -3 Query: 306 VXKDXSVYLQLQGALNA*VELXKXRKXRDEIQKXQHALSQKMXASGYREKAPPSVQEEXX 127 V + + L+G +N E+ + K D+ K + +K+ G+ KAP V EE Sbjct: 799 VVTGAELIMPLEGLINIEEEIKRLEKELDKWNKEVERVEKKLANEGFLAKAPAHVVEEER 858 Query: 126 XK 121 K Sbjct: 859 RK 860
>SYV_PSEPK (Q88P76) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 948 Score = 31.2 bits (69), Expect = 0.69 Identities = 16/60 (26%), Positives = 29/60 (48%) Frame = -3 Query: 297 DXSVYLQLQGALNA*VELXKXRKXRDEIQKXQHALSQKMXASGYREKAPPSVQEEXXXKL 118 D V + + G ++ EL + K +Q + K+ + + +KAPP+V E+ KL Sbjct: 869 DLQVLVPMAGLIDKDAELARLNKEIQRLQGEVQRVGGKLSNTAFVDKAPPAVIEKERAKL 928
>SYV_NEIMB (Q9K1H7) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 945 Score = 30.4 bits (67), Expect = 1.2 Identities = 16/55 (29%), Positives = 27/55 (49%) Frame = -3 Query: 282 LQLQGALNA*VELXKXRKXRDEIQKXQHALSQKMXASGYREKAPPSVQEEXXXKL 118 L L+ ++ E + K +++QK L+ K+ GY EKAP + E+ L Sbjct: 872 LMLKVEIDKAAETARLSKEAEKLQKALDKLNAKLSKPGYTEKAPAHLVEKDKADL 926
>SYV_NEIMA (Q9JX22) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 945 Score = 30.4 bits (67), Expect = 1.2 Identities = 16/55 (29%), Positives = 27/55 (49%) Frame = -3 Query: 282 LQLQGALNA*VELXKXRKXRDEIQKXQHALSQKMXASGYREKAPPSVQEEXXXKL 118 L L+ ++ E + K +++QK L+ K+ GY EKAP + E+ L Sbjct: 872 LMLKVEIDKATETARLSKEAEKLQKALDKLNAKLSKPGYTEKAPAHLVEKDKADL 926
>SYV_NEIG1 (Q5F5W0) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 945 Score = 30.4 bits (67), Expect = 1.2 Identities = 16/55 (29%), Positives = 27/55 (49%) Frame = -3 Query: 282 LQLQGALNA*VELXKXRKXRDEIQKXQHALSQKMXASGYREKAPPSVQEEXXXKL 118 L L+ ++ E + K +++QK L+ K+ GY EKAP + E+ L Sbjct: 872 LMLKVEIDKAAETARLSKEAEKLQKALDKLNAKLSKPGYTEKAPAHLVEKDKADL 926
>SYV_STAHJ (Q4L703) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 876 Score = 30.4 bits (67), Expect = 1.2 Identities = 16/56 (28%), Positives = 27/56 (48%) Frame = -3 Query: 288 VYLQLQGALNA*VELXKXRKXRDEIQKXQHALSQKMXASGYREKAPPSVQEEXXXK 121 V L L+G ++ E+ + K D++QK + +K+ + KAP V E K Sbjct: 801 VVLPLEGLIDMDKEIARLEKELDKLQKELDRVDKKLSNENFVNKAPEKVINEEKEK 856
>SYV_METCA (Q606C1) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 921 Score = 30.0 bits (66), Expect = 1.5 Identities = 17/77 (22%), Positives = 36/77 (46%) Frame = -3 Query: 288 VYLQLQGALNA*VELXKXRKXRDEIQKXQHALSQKMXASGYREKAPPSVQEEXXXKLTAF 109 V + ++G ++ EL + K + K L K+ + + KAPP+V E+ +L Sbjct: 845 VLIPMRGLIDKEAELTRLDKEIQRLDKELPRLEGKLGDASFLSKAPPAVVEKEKARLADL 904 Query: 108 FXQLRVIGEAEKKLDAV 58 L + ++++ A+ Sbjct: 905 QAGLASLVAQKERIQAL 921
>SYV_PASMU (Q9CMK5) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 954 Score = 30.0 bits (66), Expect = 1.5 Identities = 16/80 (20%), Positives = 36/80 (45%) Frame = -3 Query: 297 DXSVYLQLQGALNA*VELXKXRKXRDEIQKXQHALSQKMXASGYREKAPPSVQEEXXXKL 118 + + + + G +N EL + K ++ Q + K+ + KAPP+V E+ K+ Sbjct: 875 NAELLVPMAGFINKEAELARLNKEIEKYQGEIQRIENKLANEAFVAKAPPAVIEKERAKM 934 Query: 117 TAFFXQLRVIGEAEKKLDAV 58 + L + + ++A+ Sbjct: 935 AEYAEGLNKLKQQYLAIEAL 954
>SYV_PSEU2 (Q4ZXI0) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 948 Score = 30.0 bits (66), Expect = 1.5 Identities = 18/77 (23%), Positives = 33/77 (42%) Frame = -3 Query: 297 DXSVYLQLQGALNA*VELXKXRKXRDEIQKXQHALSQKMXASGYREKAPPSVQEEXXXKL 118 D V + + G ++ EL + K +Q + K+ + + +KAPP V + KL Sbjct: 869 DMEVLVPMAGLIDKGAELARLDKEIQRLQGEVQRVGGKLSNAAFVDKAPPEVIAKERAKL 928 Query: 117 TAFFXQLRVIGEAEKKL 67 T L + E ++ Sbjct: 929 TEAEQALGKLAEQHARI 945
>SYV_PSESM (Q887M3) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 948 Score = 30.0 bits (66), Expect = 1.5 Identities = 18/77 (23%), Positives = 33/77 (42%) Frame = -3 Query: 297 DXSVYLQLQGALNA*VELXKXRKXRDEIQKXQHALSQKMXASGYREKAPPSVQEEXXXKL 118 D V + + G ++ EL + K +Q + K+ + + +KAPP V + KL Sbjct: 869 DMEVLVPMAGLIDKGAELARLDKEIQRLQGEVQRVGGKLSNAAFVDKAPPDVIAKERAKL 928 Query: 117 TAFFXQLRVIGEAEKKL 67 T L + E ++ Sbjct: 929 TEAEQALGKLAEQHARI 945
>SYV_PSE14 (Q48MF2) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 948 Score = 30.0 bits (66), Expect = 1.5 Identities = 18/77 (23%), Positives = 33/77 (42%) Frame = -3 Query: 297 DXSVYLQLQGALNA*VELXKXRKXRDEIQKXQHALSQKMXASGYREKAPPSVQEEXXXKL 118 D V + + G ++ EL + K +Q + K+ + + +KAPP V + KL Sbjct: 869 DMEVLVPMAGLIDKGAELARLDKEIQRLQGEVQRVGGKLSNAAFVDKAPPEVIAKERAKL 928 Query: 117 TAFFXQLRVIGEAEKKL 67 T L + E ++ Sbjct: 929 TEAEQALGKLAEQHARI 945
>SYV_COXBU (Q83DD0) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 920 Score = 29.6 bits (65), Expect = 2.0 Identities = 13/57 (22%), Positives = 29/57 (50%) Frame = -3 Query: 288 VYLQLQGALNA*VELXKXRKXRDEIQKXQHALSQKMXASGYREKAPPSVQEEXXXKL 118 +++ L G ++ E+ + +K ++QK + +K+ Y ++AP V E+ L Sbjct: 844 IHIPLAGVIDKQTEIARLKKEISKLQKEEEKSLKKLDNPNYLQRAPQEVVEKERLSL 900
>SYV_THETH (P96142) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 862 Score = 29.3 bits (64), Expect = 2.6 Identities = 19/68 (27%), Positives = 29/68 (42%) Frame = -3 Query: 282 LQLQGALNA*VELXKXRKXRDEIQKXQHALSQKMXASGYREKAPPSVQEEXXXKLTAFFX 103 + L+G L+ + K E+ +K+ + G+REKAP V E +L Sbjct: 790 MPLEGLLDVEEWRRRQEKRLKELLALAERSQRKLASPGFREKAPKEVVEAEEARLKENLE 849 Query: 102 QLRVIGEA 79 Q I EA Sbjct: 850 QAERIREA 857
>SYV_THET8 (Q5SJ45) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 862 Score = 29.3 bits (64), Expect = 2.6 Identities = 19/68 (27%), Positives = 29/68 (42%) Frame = -3 Query: 282 LQLQGALNA*VELXKXRKXRDEIQKXQHALSQKMXASGYREKAPPSVQEEXXXKLTAFFX 103 + L+G L+ + K E+ +K+ + G+REKAP V E +L Sbjct: 790 MPLEGLLDVEEWRRRQEKRLKELLALAERSQRKLASPGFREKAPKEVVEAEEARLKENLE 849 Query: 102 QLRVIGEA 79 Q I EA Sbjct: 850 QAERIREA 857
>SYV_THET2 (Q72JG7) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 862 Score = 29.3 bits (64), Expect = 2.6 Identities = 19/68 (27%), Positives = 29/68 (42%) Frame = -3 Query: 282 LQLQGALNA*VELXKXRKXRDEIQKXQHALSQKMXASGYREKAPPSVQEEXXXKLTAFFX 103 + L+G L+ + K E+ +K+ + G+REKAP V E +L Sbjct: 790 MPLEGLLDVEEWRRRQEKRLKELLALAERSQRKLASPGFREKAPKEVVEAEEARLRENLE 849 Query: 102 QLRVIGEA 79 Q I EA Sbjct: 850 QAERIREA 857
>SYV_OCEIH (Q8EPN2) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 883 Score = 28.5 bits (62), Expect = 4.5 Identities = 16/62 (25%), Positives = 28/62 (45%) Frame = -3 Query: 306 VXKDXSVYLQLQGALNA*VELXKXRKXRDEIQKXQHALSQKMXASGYREKAPPSVQEEXX 127 V ++L L+G ++ E+ + + K + +K+ G+ KAP SV EE Sbjct: 803 VVTGAEIFLPLEGLIDFDKEIKRLENELAKWTKEVERVQKKLSNQGFVSKAPESVVEEEK 862 Query: 126 XK 121 K Sbjct: 863 RK 864
>SYV_STAES (Q8CS83) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 876 Score = 28.1 bits (61), Expect = 5.8 Identities = 14/56 (25%), Positives = 26/56 (46%) Frame = -3 Query: 288 VYLQLQGALNA*VELXKXRKXRDEIQKXQHALSQKMXASGYREKAPPSVQEEXXXK 121 V L L+G ++ E+ + K D++Q + +K+ + KAP + E K Sbjct: 801 VVLPLEGLIDMDKEIARLEKELDKLQSELDRVDKKLSNENFVNKAPEKIINEEKEK 856
>SYV_STAEQ (Q5HNN9) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 876 Score = 28.1 bits (61), Expect = 5.8 Identities = 14/56 (25%), Positives = 26/56 (46%) Frame = -3 Query: 288 VYLQLQGALNA*VELXKXRKXRDEIQKXQHALSQKMXASGYREKAPPSVQEEXXXK 121 V L L+G ++ E+ + K D++Q + +K+ + KAP + E K Sbjct: 801 VVLPLEGLIDMDKEIARLEKELDKLQSELDRVDKKLSNENFVNKAPEKIINEEKEK 856 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 30,394,503 Number of Sequences: 219361 Number of extensions: 373885 Number of successful extensions: 733 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 730 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 733 length of database: 80,573,946 effective HSP length: 79 effective length of database: 63,244,427 effective search space used: 1517866248 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
