>gb|AY109108.1| Zea mays PCO116815 mRNA sequence
          Length = 1041

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 79/98 (80%)
 Strand = Plus / Minus

                                                                       
Query: 65  tctagtttcttctcagcctcaccgatgacccgnagttgctngaaaaaggcggtgagcttn 124
           |||| |||||||||||| |||| |||||||   |||||||  || || ||||||||||| 
Sbjct: 801 tctaatttcttctcagcttcactgatgacctctagttgctccaacaaagcggtgagcttc 742

                                                 
Query: 125 ctnatgtnctcctcttggacactggggggagccttctc 162
           || |||| |||||| || || ||  | |||||||||||
Sbjct: 741 ctcatgtcctcctcctgtacgctctgtggagccttctc 704

>dbj|AK066973.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089D01, full
            insert sequence
          Length = 4411

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                        
Query: 152  ggagccttctctctgtaaccggacgcttncatcttctgagacagggcatgctgnaacttt 211
            |||||||||||| | |||||||| |||| ||| ||||| || |||||||| || | ||||
Sbjct: 4113 ggagccttctctttataaccggaagcttccattttctgtgatagggcatgttgcagcttt 4054

                    
Query: 212  tggatttc 219
            || |||||
Sbjct: 4053 tgaatttc 4046

>ref|XM_469360.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3534

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 83/104 (79%)
 Strand = Plus / Minus

                                                                        
Query: 116  gtgagcttnctnatgtnctcctcttggacactggggggagccttctctctgtaaccggac 175
            ||||| || || |||| |||||| |||||| |  | |||||||||||| ||||||| || 
Sbjct: 3092 gtgagttttctcatgtcctcctcctggacattctgtggagccttctctttgtaaccagaa 3033

                                                        
Query: 176  gcttncatcttctgagacagggcatgctgnaacttttggatttc 219
            |||| ||| ||||| ||||| || || || | |||||| |||||
Sbjct: 3032 gcttccattttctgtgacagtgcgtgttggagcttttgaatttc 2989

>dbj|AK121157.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023079F18, full
            insert sequence
          Length = 3587

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 83/104 (79%)
 Strand = Plus / Minus

                                                                        
Query: 116  gtgagcttnctnatgtnctcctcttggacactggggggagccttctctctgtaaccggac 175
            ||||| || || |||| |||||| |||||| |  | |||||||||||| ||||||| || 
Sbjct: 3304 gtgagttttctcatgtcctcctcctggacattctgtggagccttctctttgtaaccagaa 3245

                                                        
Query: 176  gcttncatcttctgagacagggcatgctgnaacttttggatttc 219
            |||| ||| ||||| ||||| || || || | |||||| |||||
Sbjct: 3244 gcttccattttctgtgacagtgcgtgttggagcttttgaatttc 3201

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 65/80 (81%)
 Strand = Plus / Minus

                                                                            
Query: 116      gtgagcttnctnatgtnctcctcttggacactggggggagccttctctctgtaaccggac 175
                ||||| || || |||| |||||| |||||| |  | |||||||||||| ||||||| || 
Sbjct: 27542742 gtgagttttctcatgtcctcctcctggacattctgtggagccttctctttgtaaccagaa 27542683

                                    
Query: 176      gcttncatcttctgagacag 195
                |||| ||| ||||| |||||
Sbjct: 27542682 gcttccattttctgtgacag 27542663



 Score = 46.1 bits (23), Expect = 0.066
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                                
Query: 152    ggagccttctctctgtaaccggacgcttncatcttctgagacagggcatg 201
              |||||||||||| | |||||||| |||| ||| ||||| || ||||||||
Sbjct: 652074 ggagccttctctttataaccggaagcttccattttctgtgatagggcatg 652025



 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 62       gcatctagtttcttctcagcctcac 86
                |||||||||||||||||||| ||||
Sbjct: 12395727 gcatctagtttcttctcagcttcac 12395751

>gb|AC137998.2| Oryza sativa chromosome 3 BAC OSJNBa0010B01 genomic sequence, complete
             sequence
          Length = 27470

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 65/80 (81%)
 Strand = Plus / Plus

                                                                         
Query: 116   gtgagcttnctnatgtnctcctcttggacactggggggagccttctctctgtaaccggac 175
             ||||| || || |||| |||||| |||||| |  | |||||||||||| ||||||| || 
Sbjct: 20032 gtgagttttctcatgtcctcctcctggacattctgtggagccttctctttgtaaccagaa 20091

                                 
Query: 176   gcttncatcttctgagacag 195
             |||| ||| ||||| |||||
Sbjct: 20092 gcttccattttctgtgacag 20111

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 65/80 (81%)
 Strand = Plus / Minus

                                                                            
Query: 116      gtgagcttnctnatgtnctcctcttggacactggggggagccttctctctgtaaccggac 175
                ||||| || || |||| |||||| |||||| |  | |||||||||||| ||||||| || 
Sbjct: 27634065 gtgagttttctcatgtcctcctcctggacattctgtggagccttctctttgtaaccagaa 27634006

                                    
Query: 176      gcttncatcttctgagacag 195
                |||| ||| ||||| |||||
Sbjct: 27634005 gcttccattttctgtgacag 27633986



 Score = 46.1 bits (23), Expect = 0.066
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                                
Query: 152    ggagccttctctctgtaaccggacgcttncatcttctgagacagggcatg 201
              |||||||||||| | |||||||| |||| ||| ||||| || ||||||||
Sbjct: 652072 ggagccttctctttataaccggaagcttccattttctgtgatagggcatg 652023



 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 62       gcatctagtttcttctcagcctcac 86
                |||||||||||||||||||| ||||
Sbjct: 12392490 gcatctagtttcttctcagcttcac 12392514

>gb|AC120508.3| Oryza sativa chromosome 3 BAC OSJNBb0021O11 genomic sequence,
            complete sequence
          Length = 123406

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 65/80 (81%)
 Strand = Plus / Plus

                                                                        
Query: 116  gtgagcttnctnatgtnctcctcttggacactggggggagccttctctctgtaaccggac 175
            ||||| || || |||| |||||| |||||| |  | |||||||||||| ||||||| || 
Sbjct: 7772 gtgagttttctcatgtcctcctcctggacattctgtggagccttctctttgtaaccagaa 7831

                                
Query: 176  gcttncatcttctgagacag 195
            |||| ||| ||||| |||||
Sbjct: 7832 gcttccattttctgtgacag 7851

>gb|AC121490.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0005F16, complete sequence
          Length = 160053

 Score = 46.1 bits (23), Expect = 0.066
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                               
Query: 152   ggagccttctctctgtaaccggacgcttncatcttctgagacagggcatg 201
             |||||||||||| | |||||||| |||| ||| ||||| || ||||||||
Sbjct: 37955 ggagccttctctttataaccggaagcttccattttctgtgatagggcatg 37906

>gb|AY112223.1| Zea mays CL3071_1 mRNA sequence
          Length = 1082

 Score = 46.1 bits (23), Expect = 0.066
 Identities = 60/74 (81%)
 Strand = Plus / Plus

                                                                       
Query: 65  tctagtttcttctcagcctcaccgatgacccgnagttgctngaaaaaggcggtgagcttn 124
           |||| |||||||||||| |||| |||||||   ||||| |  || || ||||||||||| 
Sbjct: 446 tctaatttcttctcagcttcactgatgacctctagttgttccaacaaagcggtgagcttt 505

                         
Query: 125 ctnatgtnctcctc 138
           || |||| ||||||
Sbjct: 506 ctcatgtcctcctc 519

>gb|AC125496.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0098H14, complete sequence
          Length = 132560

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 62    gcatctagtttcttctcagcctcac 86
             |||||||||||||||||||| ||||
Sbjct: 54745 gcatctagtttcttctcagcttcac 54769

>dbj|AK100513.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023099P08, full
            insert sequence
          Length = 3639

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 62   gcatctagtttcttctcagcctcac 86
            |||||||||||||||||||| ||||
Sbjct: 3519 gcatctagtttcttctcagcttcac 3495

>ref|NM_197253.1| Oryza sativa (japonica cultivar-group) putative valyl tRNA synthetase
            (OSJNBa0062C05.27), mRNA
          Length = 3171

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 37/43 (86%)
 Strand = Plus / Minus

                                                       
Query: 260  tttagagccccttgaagctgaaggtatacggatnggtctttgt 302
            |||||||| ||| | ||||| |||||||||||| | |||||||
Sbjct: 2963 tttagagctcctcgtagctggaggtatacggatagatctttgt 2921

>gb|AC084023.8| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0062C05
              map S21174S, complete sequence
          Length = 178867

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 37/43 (86%)
 Strand = Plus / Minus

                                                         
Query: 260    tttagagccccttgaagctgaaggtatacggatnggtctttgt 302
              |||||||| ||| | ||||| |||||||||||| | |||||||
Sbjct: 141483 tttagagctcctcgtagctggaggtatacggatagatctttgt 141441

>gb|AC162800.2| Mus musculus BAC clone RP24-173D2 from chromosome 17, complete sequence
          Length = 199202

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 261   ttagagccccttgaagctgaaggt 284
             ||||| ||||||||||||||||||
Sbjct: 47915 ttagatccccttgaagctgaaggt 47938

>emb|AL590080.25| Human DNA sequence from clone RP11-469M1 on chromosome 10 Contains the
             HHEX gene for hematopoietically expressed homeobox, the 5'
             end of the gene for SEC15 (S. cerevisiae)-like (SEC15L), a
             eukaryotic translation initiation factor 2 subunit 2
             (eIF-2-beta) pseudogene and four CpG islands, complete
             sequence
          Length = 190144

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 263   agagccccttgaagctgaag 282
             ||||||||||||||||||||
Sbjct: 76717 agagccccttgaagctgaag 76736

>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 37/43 (86%)
 Strand = Plus / Minus

                                                           
Query: 260      tttagagccccttgaagctgaaggtatacggatnggtctttgt 302
                |||||||| ||| | ||||| |||||||||||| | |||||||
Sbjct: 18843747 tttagagctcctcgtagctggaggtatacggatagatctttgt 18843705

>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 37/43 (86%)
 Strand = Plus / Minus

                                                           
Query: 260      tttagagccccttgaagctgaaggtatacggatnggtctttgt 302
                |||||||| ||| | ||||| |||||||||||| | |||||||
Sbjct: 18855001 tttagagctcctcgtagctggaggtatacggatagatctttgt 18854959


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,644,409
Number of Sequences: 3902068
Number of extensions: 1644409
Number of successful extensions: 24638
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 24558
Number of HSP's gapped (non-prelim): 80
length of query: 311
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 289
effective length of database: 17,147,199,772
effective search space: 4955540734108
effective search space used: 4955540734108
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)