ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd23a07 |
|---|---|
| Clone Library Name | barley_pub |
>ZIC5_HUMAN (Q96T25) Zinc finger protein ZIC 5 (Zinc finger protein of the| cerebellum 5) Length = 639 Score = 25.8 bits (55), Expect(2) = 0.70 Identities = 10/23 (43%), Positives = 14/23 (60%) Frame = -2 Query: 242 PPPPKPSFLAKFCPCLAGGGATS 174 PPPP P L+ + +GGG +S Sbjct: 143 PPPPPPPALSGYTTTNSGGGGSS 165 Score = 23.9 bits (50), Expect(2) = 0.70 Identities = 10/22 (45%), Positives = 12/22 (54%) Frame = -2 Query: 290 GDYFVGRPSNHEQNTTPPPPKP 225 G Y G S+ Q + PPPP P Sbjct: 110 GSYPCGGGSSGAQPSAPPPPAP 131
>P85B_RAT (Q63788) Phosphatidylinositol 3-kinase regulatory beta subunit| (PI3-kinase p85-beta subunit) (PtdIns-3-kinase p85-beta) Length = 722 Score = 28.9 bits (63), Expect = 3.1 Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 2/29 (6%) Frame = -2 Query: 257 EQNTTPP--PPKPSFLAKFCPCLAGGGAT 177 EQ+T PP PPKPS + LA GG+T Sbjct: 288 EQDTAPPALPPKPSKVKPAPTALANGGST 316
>PCD15_HUMAN (Q96QU1) Protocadherin-15 precursor| Length = 1955 Score = 28.9 bits (63), Expect = 3.1 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = -2 Query: 242 PPPPKPSFLAKFCPCLAGGGATS 174 PPPP SFL+ C C+ G T+ Sbjct: 1828 PPPPSASFLSTECVCITGVKCTT 1850
>UPK3B_HUMAN (Q9BT76) Uroplakin-3B precursor (Uroplakin IIIb) (UPIIIb) (p35)| Length = 320 Score = 28.9 bits (63), Expect = 3.1 Identities = 11/20 (55%), Positives = 12/20 (60%) Frame = +2 Query: 296 DCSQPEQAQGGPAAVLSPWA 355 D S Q GGPA V+ PWA Sbjct: 36 DASSQTQGAGGPAGVIGPWA 55
>GBX2_CHICK (O42230) Homeobox protein GBX-2 (Gastrulation and brain-specific| homeobox protein 2) Length = 340 Score = 28.9 bits (63), Expect = 3.1 Identities = 13/25 (52%), Positives = 15/25 (60%) Frame = -2 Query: 242 PPPPKPSFLAKFCPCLAGGGATS*T 168 PPPP P+ FCP LA G A + T Sbjct: 75 PPPPLPALPGAFCPGLAQGMALTST 99
>CAC1G_HUMAN (O43497) Voltage-dependent T-type calcium channel alpha-1G subunit| (Voltage-gated calcium channel alpha subunit Cav3.1) (Cav3.1c) (NBR13) Length = 2377 Score = 28.5 bits (62), Expect = 4.0 Identities = 16/71 (22%), Positives = 26/71 (36%) Frame = +2 Query: 122 NPPAVTCTAHHGWACRSSW*LHRRRGMDRIWPRXXXXXXXXXXXXRGLTGGRRSNHQEDC 301 +PP+ + H W+ SSW RR + + R L G Q++ Sbjct: 1085 SPPSARSSPHSPWSAASSW-TSRRSSRNSLGRAPSLKRRSPSGERRSLLSGEGQESQDEE 1143 Query: 302 SQPEQAQGGPA 334 E+ + PA Sbjct: 1144 ESSEEERASPA 1154
>DNAA_GLOVI (Q7NKK4) Chromosomal replication initiator protein dnaA| Length = 442 Score = 28.1 bits (61), Expect = 5.3 Identities = 14/54 (25%), Positives = 29/54 (53%) Frame = +3 Query: 12 IKCLAGRKAKTEQSFQR*RDSHGSNTELRLMDPIPPQILPRSRARLTTAGLVGL 173 I+ + G++ E+ F + S ++ + PPQ++PR + RL++ +GL Sbjct: 210 IQFIEGKEYTQEEFFHTFNALYESGKQIVIASDRPPQLIPRLQERLSSRFSMGL 263
>CAC1G_RAT (O54898) Voltage-dependent T-type calcium channel alpha-1G subunit| (Voltage-gated calcium channel alpha subunit Cav3.1) Length = 2254 Score = 27.7 bits (60), Expect = 6.9 Identities = 16/70 (22%), Positives = 25/70 (35%) Frame = +2 Query: 125 PPAVTCTAHHGWACRSSW*LHRRRGMDRIWPRXXXXXXXXXXXXRGLTGGRRSNHQEDCS 304 PP+ + H W+ SSW RR + + R L G Q++ Sbjct: 1065 PPSARSSPHSPWSAASSW-TSRRSSRNSLGRAPSLKRRSPSGERRSLLSGEGQESQDEEE 1123 Query: 305 QPEQAQGGPA 334 E+ + PA Sbjct: 1124 SSEEDRASPA 1133
>TESK1_RAT (Q63572) Dual specificity testis-specific protein kinase 1 (EC| 2.7.12.1) (Testicular protein kinase 1) Length = 628 Score = 27.7 bits (60), Expect = 6.9 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = +2 Query: 104 GPDSASNPPAVTCTAHHGWACRSSW 178 GP +NPPAV + GWA R W Sbjct: 513 GPSLNNNPPAVVVNSPQGWA-REPW 536
>TA4_EIMTE (P13399) Sporulated oocyst TA4 antigen precursor (Major sporozoite| surface antigen) [Contains: Sporulated oocyst TA4 antigen 17 kDa subunit; Sporulated oocyst TA4 antigen 8 kDa subunit] Length = 253 Score = 27.3 bits (59), Expect = 9.0 Identities = 12/36 (33%), Positives = 19/36 (52%) Frame = -2 Query: 290 GDYFVGRPSNHEQNTTPPPPKPSFLAKFCPCLAGGG 183 GD FV +HE++ P + + + CP + GGG Sbjct: 55 GDTFVLPAYSHEESRAAPVAETLWKTEICPKVLGGG 90
>JHD3_CAEEL (Q9U297) JmjC domain-containing histone demethylation protein 3 (EC| 1.14.11.-) (ceJMJD2) Length = 894 Score = 27.3 bits (59), Expect = 9.0 Identities = 18/53 (33%), Positives = 19/53 (35%), Gaps = 9/53 (16%) Frame = -2 Query: 260 HEQNTTPPPPKPSFLA---------KFCPCLAGGGATS*TDKPSRGEPCT*PR 129 HE + PPPP L C GGG D S GEP PR Sbjct: 576 HEDHHEPPPPLDRLLTCSNCHVTVHSHCCSGGGGGGGDDDDVTSSGEPWRCPR 628
>RUSC2_MOUSE (Q80U22) RUN and SH3 domain-containing protein 2| Length = 1514 Score = 27.3 bits (59), Expect = 9.0 Identities = 13/33 (39%), Positives = 17/33 (51%) Frame = +2 Query: 281 SNHQEDCSQPEQAQGGPAAVLSPWARXCLPXXR 379 S+ CS P + QG A +SPW+ C P R Sbjct: 790 SSASTSCSPPPE-QGTAADSVSPWSHTCPPTVR 821
>CDD_VIBVY (Q7MK48) Cytidine deaminase (EC 3.5.4.5) (Cytidine aminohydrolase)| (CDA) Length = 295 Score = 27.3 bits (59), Expect = 9.0 Identities = 15/51 (29%), Positives = 25/51 (49%) Frame = +2 Query: 11 NQMSSR*ESKNRAELPKMKRLARFQYRIETYGPDSASNPPAVTCTAHHGWA 163 N++SS E K +LP+ + Y +++GP A+ HHG+A Sbjct: 137 NELSSAKELK--IQLPEREEKKLHDYLPDSFGPSDLGIESALMSQVHHGFA 185
>CDD_VIBVU (Q8DA31) Cytidine deaminase (EC 3.5.4.5) (Cytidine aminohydrolase)| (CDA) Length = 295 Score = 27.3 bits (59), Expect = 9.0 Identities = 15/51 (29%), Positives = 25/51 (49%) Frame = +2 Query: 11 NQMSSR*ESKNRAELPKMKRLARFQYRIETYGPDSASNPPAVTCTAHHGWA 163 N++SS E K +LP+ + Y +++GP A+ HHG+A Sbjct: 137 NELSSAKELK--IQLPEREEKKLHDYLPDSFGPSDLGIESALMSQVHHGFA 185
>TESK1_MOUSE (O70146) Dual specificity testis-specific protein kinase 1 (EC| 2.7.12.1) (Testicular protein kinase 1) Length = 627 Score = 27.3 bits (59), Expect = 9.0 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = +2 Query: 104 GPDSASNPPAVTCTAHHGWACRSSW 178 GP +NPPAV + GWA R W Sbjct: 512 GPPLNNNPPAVVVNSPQGWA-REPW 535 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,106,598 Number of Sequences: 219361 Number of extensions: 921185 Number of successful extensions: 3010 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 2751 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2996 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 1370455656 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
