ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd23a04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK100463.1| Oryza sativa (japonica cultivar-group) cDNA clon... 212 1e-51
2ref|NM_188471.1| Oryza sativa (japonica cultivar-group), predic... 210 5e-51
3gb|AY112199.1| Zea mays CL62683_1 mRNA sequence 210 5e-51
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 159 2e-35
5dbj|AP002745.2| Oryza sativa (japonica cultivar-group) genomic D... 159 2e-35
6dbj|AP002861.2| Oryza sativa (japonica cultivar-group) genomic D... 159 2e-35
7gb|AC159211.2| Mus musculus BAC clone RP23-33F21 from chromosome... 42 2.5
8gb|AC073599.16|AC073599 Mus musculus 7 BAC RP23-8M3 (Roswell Par... 42 2.5
9emb|AL929334.12| Zebrafish DNA sequence from clone DKEY-24F15, c... 42 2.5
10emb|CT030137.13| Mouse DNA sequence from clone RP24-374C21 on ch... 42 2.5
11emb|CT030164.9| Mouse DNA sequence from clone RP23-311P8 on chro... 42 2.5
12emb|AL928575.7| Mouse DNA sequence from clone RP23-37A11 on chro... 42 2.5
13dbj|AB048905.1| Macaca fascicularis brain cDNA, clone:QnpA-17562 42 2.5
14dbj|AB048904.1| Macaca fascicularis brain cDNA, clone:QnpA-17560 42 2.5
15ref|NM_111801.2| Arabidopsis thaliana unknown protein AT3G09670 ... 40 9.8
16ref|NM_188468.1| Oryza sativa (japonica cultivar-group), predic... 40 9.8
17gb|AC125014.8| Mus musculus chromosome 16, clone RP24-149C21, co... 40 9.8
18gb|AC107231.9| Mus musculus chromosome 14, clone RP23-475A2, com... 40 9.8
19gb|AC129542.9| Mus musculus chromosome 1, clone RP23-249L15, com... 40 9.8
20emb|CR380955.1| Candida glabrata strain CBS138 chromosome I comp... 40 9.8
21emb|CR937047.1|RN510H6 Rattus norvegicus chromosome 5 BAC CH230-... 40 9.8
22emb|AL645932.8| Mouse DNA sequence from clone RP23-133I19 on chr... 40 9.8
23gb|AC010435.6| Homo sapiens chromosome 5 clone CTD-2210P15, comp... 40 9.8
24gb|AC091067.6| Homo sapiens chromosome 18, clone RP11-702M18, co... 40 9.8
25gb|AC008618.7| Homo sapiens chromosome 5 clone CTB-146E17, compl... 40 9.8
26gb|AF332190.1|AF332190 Mus musculus p16INK4a (Cdkn2a) gene, comp... 40 9.8
27gb|AC148690.1| Macaca mulatta Major Histocompatibility Complex B... 40 9.8
28gb|AC148684.1| Macaca mulatta Major Histocompatibility Complex B... 40 9.8
29gb|AC148682.1| Macaca mulatta Major Histocompatibility Complex M... 40 9.8
30gb|AC148680.1| Macaca mulatta Major Histocompatibility Complex B... 40 9.8
31gb|AC015861.7|AC015861 Homo sapiens, clone RP11-45A1, complete s... 40 9.8
32dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.8
33gb|AC016661.7|AC016661 Arabidopsis thaliana chromosome 3 BAC F11... 40 9.8
34dbj|AB128049.1| Macaca mulatta genes, MHC class I region, partia... 40 9.8
35gb|BC093233.1| Danio rerio zgc:112160, mRNA (cDNA clone MGC:1121... 40 9.8
36gb|BC076035.1| Danio rerio zgc:112160, mRNA (cDNA clone IMAGE:70... 40 9.8
37ref|NM_001017724.1| Danio rerio zgc:112160 (zgc:112160), mRNA 40 9.8
38gb|AC121758.14| Homo sapiens 12 BAC RP11-74M13 (Roswell Park Can... 40 9.8
39gb|AC008565.6|AC008565 Homo sapiens chromosome 5 clone CTC-538F1... 40 9.8
40emb|BX004989.8| Zebrafish DNA sequence from clone CH211-167M4 in... 40 9.8
41emb|AL831719.6| Mouse DNA sequence from clone RP23-166I8 on chro... 40 9.8
42emb|BX572629.8| Zebrafish DNA sequence from clone CH211-195L15 i... 40 9.8
43dbj|AK063270.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.8
44gb|AC100406.7| Mus musculus chromosome 9, clone RP23-134M7, comp... 40 9.8
45emb|BX005081.6| Zebrafish DNA sequence from clone CH211-69M16 in... 40 9.8
46emb|BX248984.11| Mouse DNA sequence from clone RP23-278P12 on ch... 40 9.8
47gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 9.8
48emb|AL713909.5|CNS07YQ9 Oryza sativa chromosome 12, . Partial se... 40 9.8
49gb|AC154195.1| Mus musculus BAC clone RP24-419F8 from 14, comple... 40 9.8
50emb|AL805949.4| Mouse DNA sequence from clone RP23-424K9 on chro... 40 9.8 
>dbj|AK100463.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023092A20, full
            insert sequence
          Length = 1723

 Score =  212 bits (107), Expect = 1e-51
 Identities = 221/259 (85%)
 Strand = Plus / Minus

                                                                        
Query: 458  atcacatgaaaacaaactccttcgctataccgaccgctttctctcgaccaaatagcttct 517
            ||||||| ||||  |||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct: 1543 atcacataaaaatcaactccttcgctatactgaccgctttctctcgaccaaacagcttct 1484

                                                                        
Query: 518  caacaatagccagggcgaactctgtcgcagtccctggggctctgctggtgataagattac 577
            ||||||| || || |||||||||||||| |  ||||||||| |||| |||||||| ||||
Sbjct: 1483 caacaatggctagcgcgaactctgtcgcggagcctggggctttgctagtgataaggttac 1424

                                                                        
Query: 578  cgtcaatcacaaccctgttctcacataggctctggtctgtaagcaggtgcgccatgggtg 637
            | ||||  || |||||  | ||||||   ||||| || ||||||||||| ||||| ||||
Sbjct: 1423 catcaacaaccaccctactgtcacatgcactctgatcagtaagcaggtgtgccattggtg 1364

                                                                        
Query: 638  gaaatgccgtcgccttcttcccctttagtaaaccgtggggctcgaggacatgagctgggg 697
            ||||||  || |||||||||||||| |||||||| ||||||||||| |||| ||| || |
Sbjct: 1363 gaaatgatgttgccttcttccccttcagtaaaccatggggctcgagaacataagcaggag 1304

                               
Query: 698  aagcacatattgcaccata 716
            |||| ||||||||||||||
Sbjct: 1303 aagcgcatattgcaccata 1285
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>ref|NM_188471.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1554

 Score =  210 bits (106), Expect = 5e-51
 Identities = 220/258 (85%)
 Strand = Plus / Minus

                                                                        
Query: 459  tcacatgaaaacaaactccttcgctataccgaccgctttctctcgaccaaatagcttctc 518
            |||||| ||||  |||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct: 1554 tcacataaaaatcaactccttcgctatactgaccgctttctctcgaccaaacagcttctc 1495

                                                                        
Query: 519  aacaatagccagggcgaactctgtcgcagtccctggggctctgctggtgataagattacc 578
            |||||| || || |||||||||||||| |  ||||||||| |||| |||||||| |||||
Sbjct: 1494 aacaatggctagcgcgaactctgtcgcggagcctggggctttgctagtgataaggttacc 1435

                                                                        
Query: 579  gtcaatcacaaccctgttctcacataggctctggtctgtaagcaggtgcgccatgggtgg 638
             ||||  || |||||  | ||||||   ||||| || ||||||||||| ||||| |||||
Sbjct: 1434 atcaacaaccaccctactgtcacatgcactctgatcagtaagcaggtgtgccattggtgg 1375

                                                                        
Query: 639  aaatgccgtcgccttcttcccctttagtaaaccgtggggctcgaggacatgagctgggga 698
            |||||  || |||||||||||||| |||||||| ||||||||||| |||| ||| || ||
Sbjct: 1374 aaatgatgttgccttcttccccttcagtaaaccatggggctcgagaacataagcaggaga 1315

                              
Query: 699  agcacatattgcaccata 716
            ||| ||||||||||||||
Sbjct: 1314 agcgcatattgcaccata 1297
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>gb|AY112199.1| Zea mays CL62683_1 mRNA sequence
          Length = 473

 Score =  210 bits (106), Expect = 5e-51
 Identities = 209/245 (85%)
 Strand = Plus / Minus

                                                                       
Query: 472 aactccttcgctataccgaccgctttctctcgaccaaatagcttctcaacaatagccagg 531
           |||||||| ||||||| ||| ||||| ||||||||||||||     ||||||| || |||
Sbjct: 433 aactcctttgctatactgacagctttatctcgaccaaatagnnnnncaacaatggctagg 374

                                                                       
Query: 532 gcgaactctgtcgcagtccctggggctctgctggtgataagattaccgtcaatcacaacc 591
            |||||||||||||||| ||||||||||| ||||||||||| ||||| || |  ||||||
Sbjct: 373 ccgaactctgtcgcagtgcctggggctctactggtgataaggttaccatctacaacaacc 314

                                                                       
Query: 592 ctgttctcacataggctctggtctgtaagcaggtgcgccatgggtggaaatgccgtcgcc 651
           || | |||||||  |||||||||||| |||||||| | ||| ||||||||||| || |||
Sbjct: 313 ctatgctcacatgcgctctggtctgtgagcaggtgtgacataggtggaaatgctgttgcc 254

                                                                       
Query: 652 ttcttcccctttagtaaaccgtggggctcgaggacatgagctggggaagcacatattgca 711
           ||||| ||||| ||||||||||| ||||| || ||||||||||| || ||||||||||||
Sbjct: 253 ttcttgcccttcagtaaaccgtgcggctcaagcacatgagctggagaggcacatattgca 194

                
Query: 712 ccata 716
           |||||
Sbjct: 193 ccata 189
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score =  159 bits (80), Expect = 2e-35
 Identities = 173/204 (84%)
 Strand = Plus / Minus

                                                                           
Query: 458     atcacatgaaaacaaactccttcgctataccgaccgctttctctcgaccaaatagcttct 517
               ||||||| ||||  |||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct: 6434471 atcacataaaaatcaactccttcgctatactgaccgctttctctcgaccaaacagcttct 6434412

                                                                           
Query: 518     caacaatagccagggcgaactctgtcgcagtccctggggctctgctggtgataagattac 577
               ||||||| || || |||||||||||||| |  ||||||||| |||| |||||||| ||||
Sbjct: 6434411 caacaatggctagcgcgaactctgtcgcggagcctggggctttgctagtgataaggttac 6434352

                                                                           
Query: 578     cgtcaatcacaaccctgttctcacataggctctggtctgtaagcaggtgcgccatgggtg 637
               | ||||  || |||||  | ||||||   ||||| || ||||||||||| ||||| ||||
Sbjct: 6434351 catcaacaaccaccctactgtcacatgcactctgatcagtaagcaggtgtgccattggtg 6434292

                                       
Query: 638     gaaatgccgtcgccttcttcccct 661
               ||||||  || |||||||||||||
Sbjct: 6434291 gaaatgatgttgccttcttcccct 6434268



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 51/58 (87%)
 Strand = Plus / Minus

                                                                         
Query: 659     cctttagtaaaccgtggggctcgaggacatgagctggggaagcacatattgcaccata 716
               |||| |||||||| ||||||||||| |||| ||| || ||||| ||||||||||||||
Sbjct: 6434074 ccttcagtaaaccatggggctcgagaacataagcaggagaagcgcatattgcaccata 6434017



 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 669     accgtggggctcgaggacatgagc 692
               ||||||||||||||| ||||||||
Sbjct: 6418409 accgtggggctcgagcacatgagc 6418386
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>dbj|AP002745.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0489G09
          Length = 148707

 Score =  159 bits (80), Expect = 2e-35
 Identities = 173/204 (84%)
 Strand = Plus / Minus

                                                                        
Query: 458  atcacatgaaaacaaactccttcgctataccgaccgctttctctcgaccaaatagcttct 517
            ||||||| ||||  |||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct: 1951 atcacataaaaatcaactccttcgctatactgaccgctttctctcgaccaaacagcttct 1892

                                                                        
Query: 518  caacaatagccagggcgaactctgtcgcagtccctggggctctgctggtgataagattac 577
            ||||||| || || |||||||||||||| |  ||||||||| |||| |||||||| ||||
Sbjct: 1891 caacaatggctagcgcgaactctgtcgcggagcctggggctttgctagtgataaggttac 1832

                                                                        
Query: 578  cgtcaatcacaaccctgttctcacataggctctggtctgtaagcaggtgcgccatgggtg 637
            | ||||  || |||||  | ||||||   ||||| || ||||||||||| ||||| ||||
Sbjct: 1831 catcaacaaccaccctactgtcacatgcactctgatcagtaagcaggtgtgccattggtg 1772

                                    
Query: 638  gaaatgccgtcgccttcttcccct 661
            ||||||  || |||||||||||||
Sbjct: 1771 gaaatgatgttgccttcttcccct 1748



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 51/58 (87%)
 Strand = Plus / Minus

                                                                      
Query: 659  cctttagtaaaccgtggggctcgaggacatgagctggggaagcacatattgcaccata 716
            |||| |||||||| ||||||||||| |||| ||| || ||||| ||||||||||||||
Sbjct: 1554 ccttcagtaaaccatggggctcgagaacataagcaggagaagcgcatattgcaccata 1497
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>dbj|AP002861.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0665D10
          Length = 134967

 Score =  159 bits (80), Expect = 2e-35
 Identities = 173/204 (84%)
 Strand = Plus / Minus

                                                                         
Query: 458   atcacatgaaaacaaactccttcgctataccgaccgctttctctcgaccaaatagcttct 517
             ||||||| ||||  |||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct: 56866 atcacataaaaatcaactccttcgctatactgaccgctttctctcgaccaaacagcttct 56807

                                                                         
Query: 518   caacaatagccagggcgaactctgtcgcagtccctggggctctgctggtgataagattac 577
             ||||||| || || |||||||||||||| |  ||||||||| |||| |||||||| ||||
Sbjct: 56806 caacaatggctagcgcgaactctgtcgcggagcctggggctttgctagtgataaggttac 56747

                                                                         
Query: 578   cgtcaatcacaaccctgttctcacataggctctggtctgtaagcaggtgcgccatgggtg 637
             | ||||  || |||||  | ||||||   ||||| || ||||||||||| ||||| ||||
Sbjct: 56746 catcaacaaccaccctactgtcacatgcactctgatcagtaagcaggtgtgccattggtg 56687

                                     
Query: 638   gaaatgccgtcgccttcttcccct 661
             ||||||  || |||||||||||||
Sbjct: 56686 gaaatgatgttgccttcttcccct 56663



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 51/58 (87%)
 Strand = Plus / Minus

                                                                       
Query: 659   cctttagtaaaccgtggggctcgaggacatgagctggggaagcacatattgcaccata 716
             |||| |||||||| ||||||||||| |||| ||| || ||||| ||||||||||||||
Sbjct: 56469 ccttcagtaaaccatggggctcgagaacataagcaggagaagcgcatattgcaccata 56412



 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 669   accgtggggctcgaggacatgagc 692
             ||||||||||||||| ||||||||
Sbjct: 40804 accgtggggctcgagcacatgagc 40781
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>gb|AC159211.2| Mus musculus BAC clone RP23-33F21 from chromosome 12, complete sequence
          Length = 201550

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 49     gatccttacacagatgtacta 69
              |||||||||||||||||||||
Sbjct: 191097 gatccttacacagatgtacta 191117
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>gb|AC073599.16|AC073599 Mus musculus 7 BAC RP23-8M3 (Roswell Park Cancer Institute Mouse BAC
              Library) complete sequence
          Length = 226256

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 545    cagtccctggggctctgctgg 565
              |||||||||||||||||||||
Sbjct: 205841 cagtccctggggctctgctgg 205821



 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 546    agtccctggggctctgctgg 565
              ||||||||||||||||||||
Sbjct: 205793 agtccctggggctctgctgg 205774
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>emb|AL929334.12| Zebrafish DNA sequence from clone DKEY-24F15, complete sequence
          Length = 226833

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 345    agttccagtaaatgcacacac 365
              |||||||||||||||||||||
Sbjct: 198043 agttccagtaaatgcacacac 198023
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>emb|CT030137.13| Mouse DNA sequence from clone RP24-374C21 on chromosome 12, complete
             sequence
          Length = 197285

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 417   gtttgcactttgcactgcacacagc 441
             |||||| ||||||||||||||||||
Sbjct: 97564 gtttgccctttgcactgcacacagc 97540
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>emb|CT030164.9| Mouse DNA sequence from clone RP23-311P8 on chromosome 12, complete
              sequence
          Length = 224188

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 49     gatccttacacagatgtacta 69
              |||||||||||||||||||||
Sbjct: 171766 gatccttacacagatgtacta 171746
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>emb|AL928575.7| Mouse DNA sequence from clone RP23-37A11 on chromosome 2, complete
              sequence
          Length = 167375

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 240    tgcagtttctcagtttttcct 260
              |||||||||||||||||||||
Sbjct: 144352 tgcagtttctcagtttttcct 144332
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>dbj|AB048905.1| Macaca fascicularis brain cDNA, clone:QnpA-17562
          Length = 2335

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 422 cactttgcactgcacacagca 442
           |||||||||||||||||||||
Sbjct: 931 cactttgcactgcacacagca 951
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>dbj|AB048904.1| Macaca fascicularis brain cDNA, clone:QnpA-17560
          Length = 2329

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 422 cactttgcactgcacacagca 442
           |||||||||||||||||||||
Sbjct: 931 cactttgcactgcacacagca 951
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>ref|NM_111801.2| Arabidopsis thaliana unknown protein AT3G09670 mRNA, complete cds
          Length = 2437

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 558  tctgctggtgataagattac 577
            ||||||||||||||||||||
Sbjct: 1708 tctgctggtgataagattac 1727
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>ref|NM_188468.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1041

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 669 accgtggggctcgaggacatgagc 692
           ||||||||||||||| ||||||||
Sbjct: 852 accgtggggctcgagcacatgagc 829
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>gb|AC125014.8| Mus musculus chromosome 16, clone RP24-149C21, complete sequence
          Length = 177471

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 556    gctctgctggtgataagatt 575
              ||||||||||||||||||||
Sbjct: 109108 gctctgctggtgataagatt 109127
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>gb|AC107231.9| Mus musculus chromosome 14, clone RP23-475A2, complete sequence
          Length = 216217

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 603    taggctctggtctgtaagca 622
              ||||||||||||||||||||
Sbjct: 163889 taggctctggtctgtaagca 163870
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>gb|AC129542.9| Mus musculus chromosome 1, clone RP23-249L15, complete sequence
          Length = 194807

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 603    taggctctggtctgtaagca 622
              ||||||||||||||||||||
Sbjct: 135847 taggctctggtctgtaagca 135828
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>emb|CR380955.1| Candida glabrata strain CBS138 chromosome I complete sequence
          Length = 1089401

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 130    ttttagtatacaggctatgatacatata 157
              ||||||||||||||| |||||| |||||
Sbjct: 392884 ttttagtatacaggcaatgatatatata 392911
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>emb|CR937047.1|RN510H6 Rattus norvegicus chromosome 5 BAC CH230-510H6, complete sequence
          Length = 188516

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 411    cacacagtttgcactttgca 430
              ||||||||||||||||||||
Sbjct: 186555 cacacagtttgcactttgca 186536
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>emb|AL645932.8| Mouse DNA sequence from clone RP23-133I19 on chromosome 11 Contains a
            novel gene (1810057C19Rik) and a novel gene, complete
            sequence
          Length = 65348

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 388  atgtacacagagttttggtt 407
            ||||||||||||||||||||
Sbjct: 3129 atgtacacagagttttggtt 3110
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>gb|AC010435.6| Homo sapiens chromosome 5 clone CTD-2210P15, complete sequence
          Length = 149207

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 457   tatcacatgaaaacaaactc 476
             ||||||||||||||||||||
Sbjct: 31111 tatcacatgaaaacaaactc 31092
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>gb|AC091067.6| Homo sapiens chromosome 18, clone RP11-702M18, complete sequence
          Length = 172192

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 241   gcagtttctcagtttttcct 260
             ||||||||||||||||||||
Sbjct: 72502 gcagtttctcagtttttcct 72483
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>gb|AC008618.7| Homo sapiens chromosome 5 clone CTB-146E17, complete sequence
          Length = 139029

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 241   gcagtttctcagtttttcct 260
             ||||||||||||||||||||
Sbjct: 30181 gcagtttctcagtttttcct 30200
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>gb|AF332190.1|AF332190 Mus musculus p16INK4a (Cdkn2a) gene, complete cds
          Length = 14284

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 411   cacacagtttgcactttgca 430
             ||||||||||||||||||||
Sbjct: 12591 cacacagtttgcactttgca 12610
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>gb|AC148690.1| Macaca mulatta Major Histocompatibility Complex BAC MMU227F07, complete
             sequence
          Length = 202515

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 185   gaacagattatcttgaccaa 204
             ||||||||||||||||||||
Sbjct: 98625 gaacagattatcttgaccaa 98606



 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 185  gaacagattatcttgaccaa 204
            ||||||||||||||||||||
Sbjct: 6857 gaacagattatcttgaccaa 6838
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>gb|AC148684.1| Macaca mulatta Major Histocompatibility Complex BAC MMU179H14, complete
             sequence
          Length = 165072

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 185   gaacagattatcttgaccaa 204
             ||||||||||||||||||||
Sbjct: 92264 gaacagattatcttgaccaa 92245
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>gb|AC148682.1| Macaca mulatta Major Histocompatibility Complex MMU151L13, complete
              sequence
          Length = 199819

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 185    gaacagattatcttgaccaa 204
              ||||||||||||||||||||
Sbjct: 110909 gaacagattatcttgaccaa 110890
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>gb|AC148680.1| Macaca mulatta Major Histocompatibility Complex BAC MMU139P19, complete
              sequence
          Length = 178730

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 185    gaacagattatcttgaccaa 204
              ||||||||||||||||||||
Sbjct: 165774 gaacagattatcttgaccaa 165755
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>gb|AC015861.7|AC015861 Homo sapiens, clone RP11-45A1, complete sequence
          Length = 151308

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 241   gcagtttctcagtttttcct 260
             ||||||||||||||||||||
Sbjct: 21603 gcagtttctcagtttttcct 21622
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 423      actttgcactgcacacagca 442
                ||||||||||||||||||||
Sbjct: 17703977 actttgcactgcacacagca 17703958
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>gb|AC016661.7|AC016661 Arabidopsis thaliana chromosome 3 BAC F11F8 genomic sequence, complete
             sequence
          Length = 107603

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 558   tctgctggtgataagattac 577
             ||||||||||||||||||||
Sbjct: 66612 tctgctggtgataagattac 66631
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>dbj|AB128049.1| Macaca mulatta genes, MHC class I region, partial and complete cds
          Length = 3284914

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 185     gaacagattatcttgaccaa 204
               ||||||||||||||||||||
Sbjct: 3154841 gaacagattatcttgaccaa 3154860



 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 185     gaacagattatcttgaccaa 204
               ||||||||||||||||||||
Sbjct: 2868617 gaacagattatcttgaccaa 2868598



 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 185     gaacagattatcttgaccaa 204
               ||||||||||||||||||||
Sbjct: 2706242 gaacagattatcttgaccaa 2706261
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>gb|BC093233.1| Danio rerio zgc:112160, mRNA (cDNA clone MGC:112160 IMAGE:7430255),
            complete cds
          Length = 1605

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 197  ttgaccaaacagcttattaa 216
            ||||||||||||||||||||
Sbjct: 998  ttgaccaaacagcttattaa 1017
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>gb|BC076035.1| Danio rerio zgc:112160, mRNA (cDNA clone IMAGE:7046318), partial
           cds
          Length = 1589

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 197 ttgaccaaacagcttattaa 216
           ||||||||||||||||||||
Sbjct: 969 ttgaccaaacagcttattaa 988
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>ref|NM_001017724.1| Danio rerio zgc:112160 (zgc:112160), mRNA
          Length = 1605

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 197  ttgaccaaacagcttattaa 216
            ||||||||||||||||||||
Sbjct: 998  ttgaccaaacagcttattaa 1017
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>gb|AC121758.14| Homo sapiens 12 BAC RP11-74M13 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 130479

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 28     tttttatctgtgcccttggt 47
              ||||||||||||||||||||
Sbjct: 121959 tttttatctgtgcccttggt 121940
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>gb|AC008565.6|AC008565 Homo sapiens chromosome 5 clone CTC-538F12, complete sequence
          Length = 167086

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 241   gcagtttctcagtttttcct 260
             ||||||||||||||||||||
Sbjct: 93093 gcagtttctcagtttttcct 93074
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>emb|BX004989.8| Zebrafish DNA sequence from clone CH211-167M4 in linkage group 6,
             complete sequence
          Length = 172968

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 410   ccacacagtttgcactttgcactg 433
             |||||||||||||||| |||||||
Sbjct: 39195 ccacacagtttgcactatgcactg 39172
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>emb|AL831719.6| Mouse DNA sequence from clone RP23-166I8 on chromosome 4, complete
             sequence
          Length = 194025

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 411   cacacagtttgcactttgca 430
             ||||||||||||||||||||
Sbjct: 33234 cacacagtttgcactttgca 33253
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>emb|BX572629.8| Zebrafish DNA sequence from clone CH211-195L15 in linkage group 19,
              complete sequence
          Length = 170971

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 550    cctggggctctgctggtgat 569
              ||||||||||||||||||||
Sbjct: 137241 cctggggctctgctggtgat 137222
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>dbj|AK063270.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-113-B10, full
            insert sequence
          Length = 1474

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 669  accgtggggctcgaggacatgagc 692
            ||||||||||||||| ||||||||
Sbjct: 1112 accgtggggctcgagcacatgagc 1089
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>gb|AC100406.7| Mus musculus chromosome 9, clone RP23-134M7, complete sequence
          Length = 183837

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 445   aactcagtttgttatcacat 464
             ||||||||||||||||||||
Sbjct: 97905 aactcagtttgttatcacat 97924
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>emb|BX005081.6| Zebrafish DNA sequence from clone CH211-69M16 in linkage group 7,
             complete sequence
          Length = 168607

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 233   gacttactgcagtttctcagtttt 256
             ||||||||||||||||||| ||||
Sbjct: 68807 gacttactgcagtttctcactttt 68830
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>emb|BX248984.11| Mouse DNA sequence from clone RP23-278P12 on chromosome 1, complete
             sequence
          Length = 191884

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 603   taggctctggtctgtaagca 622
             ||||||||||||||||||||
Sbjct: 52237 taggctctggtctgtaagca 52218
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 423      actttgcactgcacacagca 442
                ||||||||||||||||||||
Sbjct: 17658348 actttgcactgcacacagca 17658329
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>emb|AL713909.5|CNS07YQ9 Oryza sativa chromosome 12, . Partial sequence from BAC OSJNBa0073H17
             of library OSJNBa from chromosome 12 of cultivar
             Nipponbare of ssp. japonica of Oryza sativa (rice),
             complete sequence
          Length = 113494

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 423   actttgcactgcacacagca 442
             ||||||||||||||||||||
Sbjct: 77376 actttgcactgcacacagca 77395
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>gb|AC154195.1| Mus musculus BAC clone RP24-419F8 from 14, complete sequence
          Length = 159281

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 603    taggctctggtctgtaagca 622
              ||||||||||||||||||||
Sbjct: 140228 taggctctggtctgtaagca 140247
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>emb|AL805949.4| Mouse DNA sequence from clone RP23-424K9 on chromosome 4, complete
             sequence
          Length = 193704

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 603   taggctctggtctgtaagca 622
             ||||||||||||||||||||
Sbjct: 92205 taggctctggtctgtaagca 92186


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,930,643
Number of Sequences: 3902068
Number of extensions: 5930643
Number of successful extensions: 104875
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 104632
Number of HSP's gapped (non-prelim): 238
length of query: 719
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 696
effective length of database: 17,143,297,704
effective search space: 11931735201984
effective search space used: 11931735201984
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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