>CAP8_ARATH (Q8LBH2) Putative clathrin assembly protein At2g01600|
          Length = 571

 Score = 63.2 bits (152), Expect = 6e-10
 Identities = 31/53 (58%), Positives = 40/53 (75%)
 Frame = -1

Query: 598 SSVTDSQLGGGLDKLILDSLYDEGAYRQSQQQQLYGSSAPNPFMTNDPFAMSN 440
           S+ T+ +L GGLD L L SLYD+GAY  S Q+ +YG+ APNPF ++DPFA SN
Sbjct: 438 SASTERKLAGGLDTLTLSSLYDDGAYIAS-QRPVYGAPAPNPFASHDPFASSN 489

>CAP9_ARATH (P94017) Putative clathrin assembly protein At1g14910|
          Length = 692

 Score = 58.2 bits (139), Expect = 2e-08
 Identities = 45/115 (39%), Positives = 52/115 (45%), Gaps = 7/115 (6%)
 Frame = -1

Query: 607 NTNSSVTDSQLGGGLDKLILDSLYDEGAYRQSQQQQLYGSSAPNPFMTNDPFAMSNHXXX 428
           N  S+ T+ QL GGLD L L+SLYD+GA R + QQ  YG  A NPF   D FA S+    
Sbjct: 437 NDISAATERQLAGGLDTLTLNSLYDDGALR-AAQQPAYGVPASNPFEVQDLFAFSDSVS- 494

Query: 427 XXXXXXXXXXXXXXQIPTMIHQNPFG--PPI---QPQHP--GAGPAAVNPFLDSG 284
                           P     NPFG   P    Q Q P     P+  NPF D G
Sbjct: 495 ----------------PPSAVNNPFGLYEPTYHQQEQQPQLQVAPSPANPFGDFG 533

>CAP6_ARATH (Q8VYT2) Putative clathrin assembly protein At4g25940|
          Length = 601

 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 45/129 (34%), Positives = 59/129 (45%), Gaps = 22/129 (17%)
 Frame = -1

Query: 607 NTNSSVTDSQLGGGLDKLILDSLY-DEGAYRQSQQQQL-YG-------SSAPNPF-MTND 458
           N      +++L GG D L+LDSLY D+ A RQ Q     YG       ++ PNPF M  D
Sbjct: 455 NNPRPAPNTKLAGGFDNLLLDSLYEDDSARRQIQLTNAGYGHGGIDTTAAPPNPFQMQQD 514

Query: 457 PFAMSNHXXXXXXXXXXXXXXXXXQIPTMIHQNPFGPPIQPQHP------------GAGP 314
           PFAMSN+                 Q+ TM+HQ+P+       HP             AGP
Sbjct: 515 PFAMSNNIAPPTNVQMAMQQQQQQQM-TMMHQSPY----NYTHPHDYHQNHHHHQFSAGP 569

Query: 313 AAVNPFLDS 287
           +  NPF D+
Sbjct: 570 SPSNPFGDA 578

>CAP7_ARATH (Q9LVD8) Putative clathrin assembly protein At5g57200|
          Length = 591

 Score = 45.8 bits (107), Expect = 1e-04
 Identities = 33/71 (46%), Positives = 39/71 (54%), Gaps = 14/71 (19%)
 Frame = -1

Query: 607 NTNSSVTDSQLGGGLDKLILDSLY-DEGAYRQSQQQQL-YG-----------SSAPNPF- 470
           N    V  ++LGGG D L+LDSLY D+ A RQ Q     YG           SS PNPF 
Sbjct: 445 NNPRPVIATKLGGGFDNLLLDSLYEDDTARRQIQLTNAGYGFGATAIPGALASSNPNPFG 504

Query: 469 MTNDPFAMSNH 437
           +  DPFAMSN+
Sbjct: 505 VQQDPFAMSNN 515

>CAP10_ARATH (Q9LHS0) Putative clathrin assembly protein At5g35200|
          Length = 544

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 35/118 (29%), Positives = 44/118 (37%), Gaps = 10/118 (8%)
 Frame = -1

Query: 607 NTNSSVTDSQLGGGLDKLILDSLYDEGAYRQSQQQQLYGSSAPNP----FMTNDPFAMSN 440
           +   +  DS+L GGLDKL LDSLY++      QQ + Y     NP     M + PF  SN
Sbjct: 415 SNEGAAADSKLAGGLDKLTLDSLYEDAIRVSQQQNRSYNPWEQNPVHNGHMMHQPFYASN 474

Query: 439 HXXXXXXXXXXXXXXXXXQIPTMIHQN------PFGPPIQPQHPGAGPAAVNPFLDSG 284
                                   HQN      P   P Q Q         NPF+ +G
Sbjct: 475 GVAAPQPFQMANQNHQTFGYQ---HQNAGMMMGPVQQPYQQQQQNMNNPFGNPFVSNG 529

>CAP2_ARATH (Q8LF20) Putative clathrin assembly protein At2g25430|
          Length = 653

 Score = 35.8 bits (81), Expect = 0.099
 Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
 Frame = -1

Query: 604 TNSSVTDSQLGGGLDKLILDSLYDEGAYRQS-QQQQLYGSSA-----PNPFMTND 458
           +N     + LGGG D L+L+ +YD+G  RQ     QL G SA     P P  TN+
Sbjct: 502 SNLEKQTAALGGGFDNLLLNGMYDQGMVRQHVSTSQLTGGSASSVALPLPGKTNN 556

>CAP1_ARATH (Q8S9J8) Putative clathrin assembly protein At4g32285|
          Length = 635

 Score = 34.3 bits (77), Expect = 0.29
 Identities = 16/33 (48%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
 Frame = -1

Query: 577 LGGGLDKLILDSLYDEGAYRQS-QQQQLYGSSA 482
           +GGGLD L+L+ +YD+GA RQ     +L G S+
Sbjct: 492 MGGGLDPLLLNGMYDQGAVRQHVSTSELTGGSS 524

>CAP4_ARATH (Q9SA65) Putative clathrin assembly protein At1g03050|
          Length = 599

 Score = 33.1 bits (74), Expect = 0.64
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -1

Query: 604 TNSSVTDSQLGGGLDKLILDSLYDEGAYRQS-QQQQLYGSS 485
           TN S   S+LGGG D L+L+ +Y  GA   + +    YG+S
Sbjct: 457 TNLSGQKSELGGGFDMLLLNGMYQHGAVNAAVKTSTAYGAS 497

>CAP3_ARATH (Q8GX47) Putative clathrin assembly protein At4g02650|
          Length = 611

 Score = 33.1 bits (74), Expect = 0.64
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -1

Query: 604 TNSSVTDSQLGGGLDKLILDSLYDEGAYRQS-QQQQLYGSS 485
           T  S   S+LGGG D L+LD +Y  GA   + +    YGSS
Sbjct: 461 TRLSGQKSELGGGFDTLLLDGMYQYGAVNAAVKTSTAYGSS 501

>HFI1_YEAST (Q12060) Transcriptional coactivator HFI1/ADA1|
          Length = 488

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 364 QNPFGPPIQPQHPGAGPAAVNPFLDSG 284
           Q+P   P+QP +P A PA+ N ++  G
Sbjct: 5   QSPAPKPLQPTYPAASPASTNAYMKPG 31

>ERF1_GIALA (Q9NCP1) Eukaryotic peptide chain release factor subunit 1 (eRF1)|
           (Eukaryotic release factor 1)
          Length = 457

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = +3

Query: 129 GQAECILQSHEKSHLLGVLLAPAPRLLQAYRRLPPNGLACCC 254
           G A  I     K+ +L  + +   RL + Y RLPPNGLA  C
Sbjct: 63  GTASNIKSRVNKNAVLSAITSAMSRL-KLYNRLPPNGLAVYC 103

>FOJO_DROME (P54360) Protein four-jointed|
          Length = 583

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 4/84 (4%)
 Frame = +1

Query: 301 GLLLQGQRPDAAAELVA----RRDSDVSSLGSAAAAETWQPFELTTERRRDSTSRKDRLS 468
           GL L GQ+      ++     R + + SS+  +  +E      LT  RRR    R   LS
Sbjct: 22  GLDLSGQQQQLTCSVITAPEHRANPNPSSISQSNPSEATHMTLLTLRRRRSLQRRACLLS 81

Query: 469 *MGWELMNRTAAVVVTACRLPRHK 540
            +   +      VVV    LPRH+
Sbjct: 82  ILAAFVFGMALGVVVPMFGLPRHQ 105

>B2MG_TACAC (Q864T6) Beta-2-microglobulin precursor|
          Length = 118

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -2

Query: 600 IRLLQIVNWVVDLTSSSLTAFMTREP--TGSHNNSSCTV 490
           I LL  V+WV  +TSS      TR P   G HN+ +C V
Sbjct: 10  IGLLCCVSWVEAITSSPKIQVYTRSPAENGKHNHLNCYV 48

>ARX_HUMAN (Q96QS3) Homeobox protein ARX (Aristaless-related homeobox)|
          Length = 562

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 18/45 (40%), Positives = 21/45 (46%)
 Frame = +1

Query: 262 LPPGTRRSRYPGKGLLLQGQRPDAAAELVARRDSDVSSLGSAAAA 396
           LPP  RR   PG G LLQG    AAA   A   +  ++ G    A
Sbjct: 81  LPPKLRRLYGPGGGRLLQGAAAAAAAAAAAAAAAATATAGPRGEA 125

>MMP28_HUMAN (Q9H239) Matrix metalloproteinase-28 precursor (EC 3.4.24.-)|
           (MMP-28) (Epilysin)
          Length = 520

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = +3

Query: 144 ILQSHEKSHLLGVLLAPAPRLLQA--YRRLPPNGL 242
           ++ +HE  H LG+  +PAPR L A  Y+RL  + L
Sbjct: 236 VVLAHEIGHTLGLTHSPAPRALMAPYYKRLGRDAL 270

>NPAS3_MOUSE (Q9QZQ0) Neuronal PAS domain protein 3 (Neuronal PAS3) (Member of|
           PAS protein 6) (MOP6)
          Length = 925

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 18/45 (40%), Positives = 24/45 (53%)
 Frame = +1

Query: 292 PGKGLLLQGQRPDAAAELVARRDSDVSSLGSAAAAETWQPFELTT 426
           PG+GLL QG   DAA           SS  S++ +ET +P E T+
Sbjct: 221 PGRGLLSQGTTEDAA-----------SSASSSSQSETPEPVETTS 254


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,209,766
Number of Sequences: 219361
Number of extensions: 1747731
Number of successful extensions: 5344
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 5097
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5339
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5367617986
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)