ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd23a01 |
|---|---|
| Clone Library Name | barley_pub |
>PSAL_HORVU (P23993) Photosystem I reaction center subunit XI, chloroplast| precursor (PSI-L) (PSI subunit V) Length = 209 Score = 61.2 bits (147), Expect(2) = 1e-11 Identities = 32/42 (76%), Positives = 32/42 (76%) Frame = -1 Query: 183 PVLXLTGRKKEXDKLQTAEGWSQFTXXXXXXGVSGAVXAXFL 58 PVL LTGRKKE DKLQTAEGWSQFT GVSGAV A FL Sbjct: 157 PVLTLTGRKKEADKLQTAEGWSQFTGGFFFGGVSGAVWAYFL 198 Score = 26.2 bits (56), Expect(2) = 1e-11 Identities = 10/10 (100%), Positives = 10/10 (100%) Frame = -2 Query: 53 YVLDLPYFFK 24 YVLDLPYFFK Sbjct: 200 YVLDLPYFFK 209
>PSAL_SPIOL (Q41385) Photosystem I reaction center subunit XI, chloroplast| precursor (PSI-L) (PSI subunit V) Length = 216 Score = 47.4 bits (111), Expect(2) = 3e-07 Identities = 23/42 (54%), Positives = 29/42 (69%) Frame = -1 Query: 183 PVLXLTGRKKEXDKLQTAEGWSQFTXXXXXXGVSGAVXAXFL 58 P L LTGRKK+ D+LQ+A+GW++FT GVSG A FL Sbjct: 164 PALTLTGRKKQPDQLQSADGWAKFTGGFFFGGVSGVTWACFL 205 Score = 25.0 bits (53), Expect(2) = 3e-07 Identities = 9/10 (90%), Positives = 10/10 (100%) Frame = -2 Query: 53 YVLDLPYFFK 24 YVLDLPY+FK Sbjct: 207 YVLDLPYYFK 216
>PSAL_ARATH (Q9SUI4) Photosystem I reaction center subunit XI, chloroplast| precursor (PSI-L) (PSI subunit V) Length = 219 Score = 48.1 bits (113), Expect(2) = 4e-07 Identities = 23/42 (54%), Positives = 29/42 (69%) Frame = -1 Query: 183 PVLXLTGRKKEXDKLQTAEGWSQFTXXXXXXGVSGAVXAXFL 58 P L LTGRKK+ D+LQTA+GW++FT G+SG A FL Sbjct: 167 PSLTLTGRKKQPDQLQTADGWAKFTGGFFFGGISGVTWAYFL 208 Score = 23.5 bits (49), Expect(2) = 4e-07 Identities = 9/10 (90%), Positives = 9/10 (90%) Frame = -2 Query: 53 YVLDLPYFFK 24 YVLDLPYF K Sbjct: 210 YVLDLPYFVK 219
>PSAL_CUCSA (Q39654) Photosystem I reaction center subunit XI, chloroplast| precursor (PSI-L) (PSI subunit V) Length = 217 Score = 45.8 bits (107), Expect(2) = 4e-06 Identities = 22/42 (52%), Positives = 28/42 (66%) Frame = -1 Query: 183 PVLXLTGRKKEXDKLQTAEGWSQFTXXXXXXGVSGAVXAXFL 58 P L LTGRKK D LQTA+GW++F+ G+SG + A FL Sbjct: 165 PSLTLTGRKKTPDPLQTADGWAKFSGGFFFGGISGVIWAYFL 206 Score = 22.3 bits (46), Expect(2) = 4e-06 Identities = 8/10 (80%), Positives = 9/10 (90%) Frame = -2 Query: 53 YVLDLPYFFK 24 YVLDLPY+ K Sbjct: 208 YVLDLPYYVK 217
>PSAL_SYNY3 (P37277) Photosystem I reaction center subunit XI (PSI-L) (PSI| subunit V) Length = 157 Score = 34.7 bits (78), Expect = 0.072 Identities = 17/41 (41%), Positives = 22/41 (53%) Frame = -1 Query: 180 VLXLTGRKKEXDKLQTAEGWSQFTXXXXXXGVSGAVXAXFL 58 ++ G + D LQTA+GWSQF G+ GA A FL Sbjct: 101 LVTFQGEQGSGDTLQTADGWSQFAAGFFVGGMGGAFVAYFL 141
>PSAL_PORPU (P51222) Photosystem I reaction center subunit XI (PSI-L) (PSI| subunit V) Length = 153 Score = 33.1 bits (74), Expect = 0.21 Identities = 19/44 (43%), Positives = 21/44 (47%) Frame = -1 Query: 162 RKKEXDKLQTAEGWSQFTXXXXXXGVSGAVXAXFLXIRARPPIL 31 R D LQTAEGW QFT V G+ A L A P+L Sbjct: 103 RSDSKDPLQTAEGWGQFTAGFLVGAVGGSGFAYLLL--ANIPVL 144
>PSAL_SYNEN (P25902) Photosystem I reaction center subunit XI (PSI-L) (PSI| subunit V) Length = 148 Score = 31.2 bits (69), Expect = 0.79 Identities = 14/30 (46%), Positives = 17/30 (56%) Frame = -1 Query: 147 DKLQTAEGWSQFTXXXXXXGVSGAVXAXFL 58 D L+T+EGWSQFT + A A FL Sbjct: 109 DPLKTSEGWSQFTAGFFVGAMGSAFVAFFL 138
>PSAL_SYNEL (Q8DGB4) Photosystem I reaction center subunit XI (PSI-L) (PSI| subunit V) Length = 155 Score = 31.2 bits (69), Expect = 0.79 Identities = 14/30 (46%), Positives = 17/30 (56%) Frame = -1 Query: 147 DKLQTAEGWSQFTXXXXXXGVSGAVXAXFL 58 D L+T+EGWSQFT + A A FL Sbjct: 110 DPLKTSEGWSQFTAGFFVGAMGSAFVAFFL 139
>PSAL_GRATL (Q6B8P4) Photosystem I reaction center subunit XI (PSI-L) (PSI| subunit V) Length = 150 Score = 30.0 bits (66), Expect = 1.8 Identities = 17/39 (43%), Positives = 19/39 (48%) Frame = -1 Query: 147 DKLQTAEGWSQFTXXXXXXGVSGAVXAXFLXIRARPPIL 31 D LQT EGW QFT V G+ A L A P+L Sbjct: 108 DLLQTTEGWGQFTAGFLVGAVGGSGFAYLLL--ANIPVL 144
>PSAL_ANAVT (P31092) Photosystem I reaction center subunit XI (PSI-L) (PSI| subunit V) Length = 172 Score = 28.9 bits (63), Expect = 3.9 Identities = 13/30 (43%), Positives = 16/30 (53%) Frame = -1 Query: 147 DKLQTAEGWSQFTXXXXXXGVSGAVXAXFL 58 D Q+ EGW+ F G+ GAV A FL Sbjct: 131 DAFQSKEGWNNFASAFLIGGIGGAVVAYFL 160
>PSAL_ANASP (P58577) Photosystem I reaction center subunit XI (PSI-L) (PSI| subunit V) Length = 172 Score = 28.9 bits (63), Expect = 3.9 Identities = 13/30 (43%), Positives = 16/30 (53%) Frame = -1 Query: 147 DKLQTAEGWSQFTXXXXXXGVSGAVXAXFL 58 D Q+ EGW+ F G+ GAV A FL Sbjct: 131 DAFQSKEGWNNFASAFLIGGIGGAVVAYFL 160
>PSAL_CYACA (Q9TM17) Photosystem I reaction center subunit XI (PSI-L) (PSI| subunit V) Length = 152 Score = 28.5 bits (62), Expect = 5.1 Identities = 14/30 (46%), Positives = 14/30 (46%) Frame = -1 Query: 147 DKLQTAEGWSQFTXXXXXXGVSGAVXAXFL 58 DKLQTA GW Q V GA A L Sbjct: 108 DKLQTANGWRQLASGFLLGAVGGAGFAYIL 137
>PSAL_GUITH (O78469) Photosystem I reaction center subunit XI (PSI-L) (PSI| subunit V) Length = 152 Score = 28.1 bits (61), Expect = 6.7 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = -1 Query: 147 DKLQTAEGWSQFTXXXXXXGVSGAVXAXFL 58 ++LQ+A+GW QFT + GA A L Sbjct: 108 EQLQSAKGWRQFTSGWLVGSIGGASFAYIL 137
>PSAL_MASLA (O31126) Photosystem I reaction center subunit XI (PSI-L) (PSI| subunit V) Length = 173 Score = 28.1 bits (61), Expect = 6.7 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = -1 Query: 147 DKLQTAEGWSQFTXXXXXXGVSGAVXAXFL 58 + Q++EGW+ F G+ GAV A FL Sbjct: 131 EAFQSSEGWNNFASAFLIGGIGGAVVAYFL 160 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.314 0.140 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 17,015,215 Number of Sequences: 219361 Number of extensions: 182963 Number of successful extensions: 280 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 275 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 280 length of database: 80,573,946 effective HSP length: 36 effective length of database: 72,676,950 effective search space used: 1744246800 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits)
