Clone Name | rbasd23a01 |
---|---|
Clone Library Name | barley_pub |
>gb|M61146.1|BLYPSAL Hordeum vulgare photosystem I protein (PSI-L) mRNA, complete cds Length = 777 Score = 297 bits (150), Expect = 6e-78 Identities = 174/183 (95%), Gaps = 1/183 (0%) Strand = Plus / Minus Query: 1 catgcatgccaccnattaatctacttgaagaagtatgggaggtcgagcacgtattnggag 60 ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 683 catgcatgccacctattaatctacttgaagaagtatgggaggtcgagcacgtag-aggag 625 Query: 61 gaagtntgcncagacggcgccggatacaccgncgaagaagaagcctccggtgaactgcga 120 ||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 624 gaagtatgcccagacggcgccggatacaccgccgaagaagaagcctccggtgaactgcga 565 Query: 121 ccacccttcggcggtctggagcttgtcggnctccttcttgcgtccggtgagggngagcac 180 ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| Sbjct: 564 ccacccttcggcggtctggagcttgtcggcctccttcttgcgtccggtgagggtgagcac 505 Query: 181 cgg 183 ||| Sbjct: 504 cgg 502
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 131 bits (66), Expect = 8e-28 Identities = 131/153 (85%), Gaps = 1/153 (0%) Strand = Plus / Minus Query: 19 atctacttgaagaagtatgggaggtcgagcacgtattnggaggaagtntgcncagacggc 78 ||||||||||||||||| ||||||||||||||||| ||||||||| || |||| | | Sbjct: 13161383 atctacttgaagaagtacgggaggtcgagcacgtag-aggaggaagtaggcccagaggac 13161325 Query: 79 gccggatacaccgncgaagaagaagcctccggtgaactgcgaccacccttcggcggtctg 138 |||||| | ||| ||||||||||||| |||||||||| | ||| || ||||||||||| Sbjct: 13161324 gccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctg 13161265 Query: 139 gagcttgtcggnctccttcttgcgtccggtgag 171 |||||||||| |||||||||||| |||||||| Sbjct: 13161264 cagcttgtcggcctccttcttgcggccggtgag 13161232
>dbj|AK119162.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-D08, full insert sequence Length = 923 Score = 131 bits (66), Expect = 8e-28 Identities = 131/153 (85%), Gaps = 1/153 (0%) Strand = Plus / Minus Query: 19 atctacttgaagaagtatgggaggtcgagcacgtattnggaggaagtntgcncagacggc 78 ||||||||||||||||| ||||||||||||||||| ||||||||| || |||| | | Sbjct: 749 atctacttgaagaagtacgggaggtcgagcacgtag-aggaggaagtaggcccagaggac 691 Query: 79 gccggatacaccgncgaagaagaagcctccggtgaactgcgaccacccttcggcggtctg 138 |||||| | ||| ||||||||||||| |||||||||| | ||| || ||||||||||| Sbjct: 690 gccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctg 631 Query: 139 gagcttgtcggnctccttcttgcgtccggtgag 171 |||||||||| |||||||||||| |||||||| Sbjct: 630 cagcttgtcggcctccttcttgcggccggtgag 598
>dbj|AK099109.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030F01, full insert sequence Length = 932 Score = 131 bits (66), Expect = 8e-28 Identities = 131/153 (85%), Gaps = 1/153 (0%) Strand = Plus / Minus Query: 19 atctacttgaagaagtatgggaggtcgagcacgtattnggaggaagtntgcncagacggc 78 ||||||||||||||||| ||||||||||||||||| ||||||||| || |||| | | Sbjct: 699 atctacttgaagaagtacgggaggtcgagcacgtag-aggaggaagtaggcccagaggac 641 Query: 79 gccggatacaccgncgaagaagaagcctccggtgaactgcgaccacccttcggcggtctg 138 |||||| | ||| ||||||||||||| |||||||||| | ||| || ||||||||||| Sbjct: 640 gccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctg 581 Query: 139 gagcttgtcggnctccttcttgcgtccggtgag 171 |||||||||| |||||||||||| |||||||| Sbjct: 580 cagcttgtcggcctccttcttgcggccggtgag 548
>dbj|AK059750.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-B01, full insert sequence Length = 985 Score = 131 bits (66), Expect = 8e-28 Identities = 131/153 (85%), Gaps = 1/153 (0%) Strand = Plus / Minus Query: 19 atctacttgaagaagtatgggaggtcgagcacgtattnggaggaagtntgcncagacggc 78 ||||||||||||||||| ||||||||||||||||| ||||||||| || |||| | | Sbjct: 721 atctacttgaagaagtacgggaggtcgagcacgtag-aggaggaagtaggcccagaggac 663 Query: 79 gccggatacaccgncgaagaagaagcctccggtgaactgcgaccacccttcggcggtctg 138 |||||| | ||| ||||||||||||| |||||||||| | ||| || ||||||||||| Sbjct: 662 gccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctg 603 Query: 139 gagcttgtcggnctccttcttgcgtccggtgag 171 |||||||||| |||||||||||| |||||||| Sbjct: 602 cagcttgtcggcctccttcttgcggccggtgag 570
>dbj|AK058207.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-010-A09, full insert sequence Length = 923 Score = 131 bits (66), Expect = 8e-28 Identities = 131/153 (85%), Gaps = 1/153 (0%) Strand = Plus / Minus Query: 19 atctacttgaagaagtatgggaggtcgagcacgtattnggaggaagtntgcncagacggc 78 ||||||||||||||||| ||||||||||||||||| ||||||||| || |||| | | Sbjct: 749 atctacttgaagaagtacgggaggtcgagcacgtag-aggaggaagtaggcccagaggac 691 Query: 79 gccggatacaccgncgaagaagaagcctccggtgaactgcgaccacccttcggcggtctg 138 |||||| | ||| ||||||||||||| |||||||||| | ||| || ||||||||||| Sbjct: 690 gccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctg 631 Query: 139 gagcttgtcggnctccttcttgcgtccggtgag 171 |||||||||| |||||||||||| |||||||| Sbjct: 630 cagcttgtcggcctccttcttgcggccggtgag 598
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 131 bits (66), Expect = 8e-28 Identities = 131/153 (85%), Gaps = 1/153 (0%) Strand = Plus / Minus Query: 19 atctacttgaagaagtatgggaggtcgagcacgtattnggaggaagtntgcncagacggc 78 ||||||||||||||||| ||||||||||||||||| ||||||||| || |||| | | Sbjct: 13115658 atctacttgaagaagtacgggaggtcgagcacgtag-aggaggaagtaggcccagaggac 13115600 Query: 79 gccggatacaccgncgaagaagaagcctccggtgaactgcgaccacccttcggcggtctg 138 |||||| | ||| ||||||||||||| |||||||||| | ||| || ||||||||||| Sbjct: 13115599 gccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctg 13115540 Query: 139 gagcttgtcggnctccttcttgcgtccggtgag 171 |||||||||| |||||||||||| |||||||| Sbjct: 13115539 cagcttgtcggcctccttcttgcggccggtgag 13115507
>emb|AL732381.3|CNS08C94 Oryza sativa chromosome 12, . BAC OJ1112_F01 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 193499 Score = 131 bits (66), Expect = 8e-28 Identities = 131/153 (85%), Gaps = 1/153 (0%) Strand = Plus / Plus Query: 19 atctacttgaagaagtatgggaggtcgagcacgtattnggaggaagtntgcncagacggc 78 ||||||||||||||||| ||||||||||||||||| ||||||||| || |||| | | Sbjct: 169359 atctacttgaagaagtacgggaggtcgagcacgtag-aggaggaagtaggcccagaggac 169417 Query: 79 gccggatacaccgncgaagaagaagcctccggtgaactgcgaccacccttcggcggtctg 138 |||||| | ||| ||||||||||||| |||||||||| | ||| || ||||||||||| Sbjct: 169418 gccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctg 169477 Query: 139 gagcttgtcggnctccttcttgcgtccggtgag 171 |||||||||| |||||||||||| |||||||| Sbjct: 169478 cagcttgtcggcctccttcttgcggccggtgag 169510
>emb|AL731785.2|CNS08C89 Oryza sativa chromosome 12, . BAC OSJNBa0037L20 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 178827 Score = 131 bits (66), Expect = 8e-28 Identities = 131/153 (85%), Gaps = 1/153 (0%) Strand = Plus / Minus Query: 19 atctacttgaagaagtatgggaggtcgagcacgtattnggaggaagtntgcncagacggc 78 ||||||||||||||||| ||||||||||||||||| ||||||||| || |||| | | Sbjct: 150586 atctacttgaagaagtacgggaggtcgagcacgtag-aggaggaagtaggcccagaggac 150528 Query: 79 gccggatacaccgncgaagaagaagcctccggtgaactgcgaccacccttcggcggtctg 138 |||||| | ||| ||||||||||||| |||||||||| | ||| || ||||||||||| Sbjct: 150527 gccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctg 150468 Query: 139 gagcttgtcggnctccttcttgcgtccggtgag 171 |||||||||| |||||||||||| |||||||| Sbjct: 150467 cagcttgtcggcctccttcttgcggccggtgag 150435
>dbj|AK105154.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-103-F07, full insert sequence Length = 964 Score = 123 bits (62), Expect = 2e-25 Identities = 130/153 (84%), Gaps = 1/153 (0%) Strand = Plus / Minus Query: 19 atctacttgaagaagtatgggaggtcgagcacgtattnggaggaagtntgcncagacggc 78 ||||||||||||||||| ||||| ||||||||||| ||||||||| || |||| | | Sbjct: 704 atctacttgaagaagtacgggagatcgagcacgtag-aggaggaagtaggcccagaggac 646 Query: 79 gccggatacaccgncgaagaagaagcctccggtgaactgcgaccacccttcggcggtctg 138 |||||| | ||| ||||||||||||| |||||||||| | ||| || ||||||||||| Sbjct: 645 gccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctg 586 Query: 139 gagcttgtcggnctccttcttgcgtccggtgag 171 |||||||||| |||||||||||| |||||||| Sbjct: 585 cagcttgtcggcctccttcttgcggccggtgag 553
>gb|AY103985.1| Zea mays PCO103239 mRNA sequence Length = 1657 Score = 89.7 bits (45), Expect = 3e-15 Identities = 116/140 (82%), Gaps = 1/140 (0%) Strand = Plus / Minus Query: 20 tctacttgaagaagtatgggaggtcgagcacgtattnggaggaagtntgcncagacggcg 79 |||||||||||||||| ||||||||||||||||| |||| |||| || |||| || Sbjct: 1499 tctacttgaagaagtaggggaggtcgagcacgtag-aggagaaagtaggcccagagcacg 1441 Query: 80 ccggatacaccgncgaagaagaagcctccggtgaactgcgaccacccttcggcggtctgg 139 ||||| | ||| |||||||||| || |||||||||| | ||| || ||||||||||| Sbjct: 1440 ccggagatgccgccgaagaagaaccccccggtgaacttggcccagccgtcggcggtctgc 1381 Query: 140 agcttgtcggnctccttctt 159 |||||||||| ||||||||| Sbjct: 1380 agcttgtcggcctccttctt 1361
>dbj|AB219568.1| Fragaria x ananassa FrPSI mRNA for photosystem I protein, partial cds Length = 404 Score = 54.0 bits (27), Expect = 2e-04 Identities = 38/42 (90%) Strand = Plus / Minus Query: 127 ttcggcggtctggagcttgtcggnctccttcttgcgtccggt 168 ||||||||| ||||||| ||||| |||||||||||| ||||| Sbjct: 183 ttcggcggtttggagctggtcgggctccttcttgcggccggt 142
>emb|X57903.1|OS08RG10F O.sativa random single-copy DNA fragment 08RG108F Length = 162 Score = 50.1 bits (25), Expect = 0.002 Identities = 28/29 (96%) Strand = Plus / Minus Query: 20 tctacttgaagaagtatgggaggtcgagc 48 |||||||||||||||| |||||||||||| Sbjct: 109 tctacttgaagaagtacgggaggtcgagc 81
>emb|X64445.1|SOPSAL S.oleracea psaL mRNA for subunit XI of photosystem I reaction center Length = 834 Score = 44.1 bits (22), Expect = 0.15 Identities = 33/37 (89%) Strand = Plus / Minus Query: 80 ccggatacaccgncgaagaagaagcctccggtgaact 116 ||||| ||||| |||||||||| ||||||||||||| Sbjct: 676 ccggaaacaccaccgaagaagaaccctccggtgaact 640
>gb|AC117192.3| Mus musculus BAC clone RP23-77A18 from 2, complete sequence Length = 161199 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 aatctacttgaagaagtatg 37 |||||||||||||||||||| Sbjct: 143165 aatctacttgaagaagtatg 143184
>gb|CP000123.1| Mycoplasma capricolum subsp. capricolum ATCC 27343, complete genome Length = 1010023 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 attaatctacttgaagaagt 34 |||||||||||||||||||| Sbjct: 781146 attaatctacttgaagaagt 781165
>emb|AL928659.16| Mouse DNA sequence from clone RP23-271B13 on chromosome 2, complete sequence Length = 209560 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 aatctacttgaagaagtatg 37 |||||||||||||||||||| Sbjct: 121761 aatctacttgaagaagtatg 121780
>gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome Length = 4607203 Score = 38.2 bits (19), Expect = 9.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 125 ccttcggcggtctggagct 143 ||||||||||||||||||| Sbjct: 500847 ccttcggcggtctggagct 500865
>gb|AE014075.1| Escherichia coli CFT073, complete genome Length = 5231428 Score = 38.2 bits (19), Expect = 9.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 125 ccttcggcggtctggagct 143 ||||||||||||||||||| Sbjct: 646116 ccttcggcggtctggagct 646134
>gb|CP000243.1| Escherichia coli UTI89, complete genome Length = 5065741 Score = 38.2 bits (19), Expect = 9.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 125 ccttcggcggtctggagct 143 ||||||||||||||||||| Sbjct: 588074 ccttcggcggtctggagct 588092
>gb|U00096.2| Escherichia coli K-12 MG1655, complete genome Length = 4639675 Score = 38.2 bits (19), Expect = 9.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 125 ccttcggcggtctggagct 143 ||||||||||||||||||| Sbjct: 601843 ccttcggcggtctggagct 601861
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 38.2 bits (19), Expect = 9.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 127 ttcggcggtctggagcttgtcgg 149 |||||||| |||||||||||||| Sbjct: 1174925 ttcggcggactggagcttgtcgg 1174947
>dbj|AP009048.1| Escherichia coli W3110 DNA, complete genome Length = 4646332 Score = 38.2 bits (19), Expect = 9.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 125 ccttcggcggtctggagct 143 ||||||||||||||||||| Sbjct: 601843 ccttcggcggtctggagct 601861
>gb|U82598.1|ECU82598 Escherichia coli genomic sequence of minutes 9 to 12 Length = 136742 Score = 38.2 bits (19), Expect = 9.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 125 ccttcggcggtctggagct 143 ||||||||||||||||||| Sbjct: 43251 ccttcggcggtctggagct 43269
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 38.2 bits (19), Expect = 9.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 126 cttcggcggtctggagcttgtcg 148 ||||| ||||||||||||||||| Sbjct: 7100906 cttcgacggtctggagcttgtcg 7100928
>gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome Length = 4599354 Score = 38.2 bits (19), Expect = 9.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 125 ccttcggcggtctggagct 143 ||||||||||||||||||| Sbjct: 500650 ccttcggcggtctggagct 500668
>gb|AC167667.4| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940123D9, complete sequence Length = 121336 Score = 38.2 bits (19), Expect = 9.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 73 gacggcgccggatacaccg 91 ||||||||||||||||||| Sbjct: 16277 gacggcgccggatacaccg 16295
>gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome Length = 5528445 Score = 38.2 bits (19), Expect = 9.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 125 ccttcggcggtctggagct 143 ||||||||||||||||||| Sbjct: 684931 ccttcggcggtctggagct 684949
>dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome Length = 5498450 Score = 38.2 bits (19), Expect = 9.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 125 ccttcggcggtctggagct 143 ||||||||||||||||||| Sbjct: 685149 ccttcggcggtctggagct 685167
>gb|CP000034.1| Shigella dysenteriae Sd197, complete genome Length = 4369232 Score = 38.2 bits (19), Expect = 9.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 125 ccttcggcggtctggagct 143 ||||||||||||||||||| Sbjct: 476090 ccttcggcggtctggagct 476108
>gb|L41842.1|MQSVITE Aedes aegypti vitellogenin (VgA1) gene, complete cds Length = 8780 Score = 38.2 bits (19), Expect = 9.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 22 tacttgaagaagtatggga 40 ||||||||||||||||||| Sbjct: 7277 tacttgaagaagtatggga 7259
>gb|CP000036.1| Shigella boydii Sb227, complete genome Length = 4519823 Score = 38.2 bits (19), Expect = 9.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 125 ccttcggcggtctggagct 143 ||||||||||||||||||| Sbjct: 452461 ccttcggcggtctggagct 452479
>gb|CP000038.1| Shigella sonnei Ss046, complete genome Length = 4825265 Score = 38.2 bits (19), Expect = 9.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 125 ccttcggcggtctggagct 143 ||||||||||||||||||| Sbjct: 562937 ccttcggcggtctggagct 562955
>gb|M58000.1|ECOPHEPA Escherichia coli permease (pheP) gene, complete cds Length = 2256 Score = 38.2 bits (19), Expect = 9.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 125 ccttcggcggtctggagct 143 ||||||||||||||||||| Sbjct: 1297 ccttcggcggtctggagct 1315
>gb|U02548.1|AAU02548 Aedes aegypti UGALS vitellogenin mRNA, complete cds Length = 6504 Score = 38.2 bits (19), Expect = 9.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 22 tacttgaagaagtatggga 40 ||||||||||||||||||| Sbjct: 5099 tacttgaagaagtatggga 5081 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 676,200 Number of Sequences: 3902068 Number of extensions: 676200 Number of successful extensions: 33543 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 35 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 33293 Number of HSP's gapped (non-prelim): 240 length of query: 183 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 161 effective length of database: 17,147,199,772 effective search space: 2760699163292 effective search space used: 2760699163292 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)