ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd23a01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|M61146.1|BLYPSAL Hordeum vulgare photosystem I protein (PSI-L... 297 6e-78
2dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 131 8e-28
3dbj|AK119162.1| Oryza sativa (japonica cultivar-group) cDNA clon... 131 8e-28
4dbj|AK099109.1| Oryza sativa (japonica cultivar-group) cDNA clon... 131 8e-28
5dbj|AK059750.1| Oryza sativa (japonica cultivar-group) cDNA clon... 131 8e-28
6dbj|AK058207.1| Oryza sativa (japonica cultivar-group) cDNA clon... 131 8e-28
7gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 131 8e-28
8emb|AL732381.3|CNS08C94 Oryza sativa chromosome 12, . BAC OJ1112... 131 8e-28
9emb|AL731785.2|CNS08C89 Oryza sativa chromosome 12, . BAC OSJNBa... 131 8e-28
10dbj|AK105154.1| Oryza sativa (japonica cultivar-group) cDNA clon... 123 2e-25
11gb|AY103985.1| Zea mays PCO103239 mRNA sequence 90 3e-15
12dbj|AB219568.1| Fragaria x ananassa FrPSI mRNA for photosystem I... 54 2e-04
13emb|X57903.1|OS08RG10F O.sativa random single-copy DNA fragment ... 50 0.002
14emb|X64445.1|SOPSAL S.oleracea psaL mRNA for subunit XI of photo... 44 0.15
15gb|AC117192.3| Mus musculus BAC clone RP23-77A18 from 2, complet... 40 2.3
16gb|CP000123.1| Mycoplasma capricolum subsp. capricolum ATCC 2734... 40 2.3
17emb|AL928659.16| Mouse DNA sequence from clone RP23-271B13 on ch... 40 2.3
18gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome 38 9.0
19gb|AE014075.1| Escherichia coli CFT073, complete genome 38 9.0
20gb|CP000243.1| Escherichia coli UTI89, complete genome 38 9.0
21gb|U00096.2| Escherichia coli K-12 MG1655, complete genome 38 9.0
22gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete ... 38 9.0
23dbj|AP009048.1| Escherichia coli W3110 DNA, complete genome 38 9.0
24gb|U82598.1|ECU82598 Escherichia coli genomic sequence of minute... 38 9.0
25dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 38 9.0
26gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome 38 9.0
27gb|AC167667.4| Culex pipiens quinquefasciatus, clone Culex pipie... 38 9.0
28gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome 38 9.0
29dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome 38 9.0
30gb|CP000034.1| Shigella dysenteriae Sd197, complete genome 38 9.0
31gb|L41842.1|MQSVITE Aedes aegypti vitellogenin (VgA1) gene, comp... 38 9.0
32gb|CP000036.1| Shigella boydii Sb227, complete genome 38 9.0
33gb|CP000038.1| Shigella sonnei Ss046, complete genome 38 9.0
34gb|M58000.1|ECOPHEPA Escherichia coli permease (pheP) gene, comp... 38 9.0
35gb|U02548.1|AAU02548 Aedes aegypti UGALS vitellogenin mRNA, comp... 38 9.0

>gb|M61146.1|BLYPSAL Hordeum vulgare photosystem I protein (PSI-L) mRNA, complete cds
          Length = 777

 Score =  297 bits (150), Expect = 6e-78
 Identities = 174/183 (95%), Gaps = 1/183 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgcatgccaccnattaatctacttgaagaagtatgggaggtcgagcacgtattnggag 60
           ||||||||||||| |||||||||||||||||||||||||||||||||||||||   ||||
Sbjct: 683 catgcatgccacctattaatctacttgaagaagtatgggaggtcgagcacgtag-aggag 625

                                                                       
Query: 61  gaagtntgcncagacggcgccggatacaccgncgaagaagaagcctccggtgaactgcga 120
           ||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 624 gaagtatgcccagacggcgccggatacaccgccgaagaagaagcctccggtgaactgcga 565

                                                                       
Query: 121 ccacccttcggcggtctggagcttgtcggnctccttcttgcgtccggtgagggngagcac 180
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 564 ccacccttcggcggtctggagcttgtcggcctccttcttgcgtccggtgagggtgagcac 505

              
Query: 181 cgg 183
           |||
Sbjct: 504 cgg 502



to top

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  131 bits (66), Expect = 8e-28
 Identities = 131/153 (85%), Gaps = 1/153 (0%)
 Strand = Plus / Minus

                                                                            
Query: 19       atctacttgaagaagtatgggaggtcgagcacgtattnggaggaagtntgcncagacggc 78
                ||||||||||||||||| |||||||||||||||||   |||||||||  || |||| | |
Sbjct: 13161383 atctacttgaagaagtacgggaggtcgagcacgtag-aggaggaagtaggcccagaggac 13161325

                                                                            
Query: 79       gccggatacaccgncgaagaagaagcctccggtgaactgcgaccacccttcggcggtctg 138
                |||||| |  ||| ||||||||||||| ||||||||||  | ||| || |||||||||||
Sbjct: 13161324 gccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctg 13161265

                                                 
Query: 139      gagcttgtcggnctccttcttgcgtccggtgag 171
                 |||||||||| |||||||||||| ||||||||
Sbjct: 13161264 cagcttgtcggcctccttcttgcggccggtgag 13161232



to top

>dbj|AK119162.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-D08, full
           insert sequence
          Length = 923

 Score =  131 bits (66), Expect = 8e-28
 Identities = 131/153 (85%), Gaps = 1/153 (0%)
 Strand = Plus / Minus

                                                                       
Query: 19  atctacttgaagaagtatgggaggtcgagcacgtattnggaggaagtntgcncagacggc 78
           ||||||||||||||||| |||||||||||||||||   |||||||||  || |||| | |
Sbjct: 749 atctacttgaagaagtacgggaggtcgagcacgtag-aggaggaagtaggcccagaggac 691

                                                                       
Query: 79  gccggatacaccgncgaagaagaagcctccggtgaactgcgaccacccttcggcggtctg 138
           |||||| |  ||| ||||||||||||| ||||||||||  | ||| || |||||||||||
Sbjct: 690 gccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctg 631

                                            
Query: 139 gagcttgtcggnctccttcttgcgtccggtgag 171
            |||||||||| |||||||||||| ||||||||
Sbjct: 630 cagcttgtcggcctccttcttgcggccggtgag 598



to top

>dbj|AK099109.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030F01, full
           insert sequence
          Length = 932

 Score =  131 bits (66), Expect = 8e-28
 Identities = 131/153 (85%), Gaps = 1/153 (0%)
 Strand = Plus / Minus

                                                                       
Query: 19  atctacttgaagaagtatgggaggtcgagcacgtattnggaggaagtntgcncagacggc 78
           ||||||||||||||||| |||||||||||||||||   |||||||||  || |||| | |
Sbjct: 699 atctacttgaagaagtacgggaggtcgagcacgtag-aggaggaagtaggcccagaggac 641

                                                                       
Query: 79  gccggatacaccgncgaagaagaagcctccggtgaactgcgaccacccttcggcggtctg 138
           |||||| |  ||| ||||||||||||| ||||||||||  | ||| || |||||||||||
Sbjct: 640 gccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctg 581

                                            
Query: 139 gagcttgtcggnctccttcttgcgtccggtgag 171
            |||||||||| |||||||||||| ||||||||
Sbjct: 580 cagcttgtcggcctccttcttgcggccggtgag 548



to top

>dbj|AK059750.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-B01, full
           insert sequence
          Length = 985

 Score =  131 bits (66), Expect = 8e-28
 Identities = 131/153 (85%), Gaps = 1/153 (0%)
 Strand = Plus / Minus

                                                                       
Query: 19  atctacttgaagaagtatgggaggtcgagcacgtattnggaggaagtntgcncagacggc 78
           ||||||||||||||||| |||||||||||||||||   |||||||||  || |||| | |
Sbjct: 721 atctacttgaagaagtacgggaggtcgagcacgtag-aggaggaagtaggcccagaggac 663

                                                                       
Query: 79  gccggatacaccgncgaagaagaagcctccggtgaactgcgaccacccttcggcggtctg 138
           |||||| |  ||| ||||||||||||| ||||||||||  | ||| || |||||||||||
Sbjct: 662 gccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctg 603

                                            
Query: 139 gagcttgtcggnctccttcttgcgtccggtgag 171
            |||||||||| |||||||||||| ||||||||
Sbjct: 602 cagcttgtcggcctccttcttgcggccggtgag 570



to top

>dbj|AK058207.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-010-A09, full
           insert sequence
          Length = 923

 Score =  131 bits (66), Expect = 8e-28
 Identities = 131/153 (85%), Gaps = 1/153 (0%)
 Strand = Plus / Minus

                                                                       
Query: 19  atctacttgaagaagtatgggaggtcgagcacgtattnggaggaagtntgcncagacggc 78
           ||||||||||||||||| |||||||||||||||||   |||||||||  || |||| | |
Sbjct: 749 atctacttgaagaagtacgggaggtcgagcacgtag-aggaggaagtaggcccagaggac 691

                                                                       
Query: 79  gccggatacaccgncgaagaagaagcctccggtgaactgcgaccacccttcggcggtctg 138
           |||||| |  ||| ||||||||||||| ||||||||||  | ||| || |||||||||||
Sbjct: 690 gccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctg 631

                                            
Query: 139 gagcttgtcggnctccttcttgcgtccggtgag 171
            |||||||||| |||||||||||| ||||||||
Sbjct: 630 cagcttgtcggcctccttcttgcggccggtgag 598



to top

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  131 bits (66), Expect = 8e-28
 Identities = 131/153 (85%), Gaps = 1/153 (0%)
 Strand = Plus / Minus

                                                                            
Query: 19       atctacttgaagaagtatgggaggtcgagcacgtattnggaggaagtntgcncagacggc 78
                ||||||||||||||||| |||||||||||||||||   |||||||||  || |||| | |
Sbjct: 13115658 atctacttgaagaagtacgggaggtcgagcacgtag-aggaggaagtaggcccagaggac 13115600

                                                                            
Query: 79       gccggatacaccgncgaagaagaagcctccggtgaactgcgaccacccttcggcggtctg 138
                |||||| |  ||| ||||||||||||| ||||||||||  | ||| || |||||||||||
Sbjct: 13115599 gccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctg 13115540

                                                 
Query: 139      gagcttgtcggnctccttcttgcgtccggtgag 171
                 |||||||||| |||||||||||| ||||||||
Sbjct: 13115539 cagcttgtcggcctccttcttgcggccggtgag 13115507



to top

>emb|AL732381.3|CNS08C94 Oryza sativa chromosome 12, . BAC OJ1112_F01 of library Monsanto from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 193499

 Score =  131 bits (66), Expect = 8e-28
 Identities = 131/153 (85%), Gaps = 1/153 (0%)
 Strand = Plus / Plus

                                                                          
Query: 19     atctacttgaagaagtatgggaggtcgagcacgtattnggaggaagtntgcncagacggc 78
              ||||||||||||||||| |||||||||||||||||   |||||||||  || |||| | |
Sbjct: 169359 atctacttgaagaagtacgggaggtcgagcacgtag-aggaggaagtaggcccagaggac 169417

                                                                          
Query: 79     gccggatacaccgncgaagaagaagcctccggtgaactgcgaccacccttcggcggtctg 138
              |||||| |  ||| ||||||||||||| ||||||||||  | ||| || |||||||||||
Sbjct: 169418 gccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctg 169477

                                               
Query: 139    gagcttgtcggnctccttcttgcgtccggtgag 171
               |||||||||| |||||||||||| ||||||||
Sbjct: 169478 cagcttgtcggcctccttcttgcggccggtgag 169510



to top

>emb|AL731785.2|CNS08C89 Oryza sativa chromosome 12, . BAC OSJNBa0037L20 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 178827

 Score =  131 bits (66), Expect = 8e-28
 Identities = 131/153 (85%), Gaps = 1/153 (0%)
 Strand = Plus / Minus

                                                                          
Query: 19     atctacttgaagaagtatgggaggtcgagcacgtattnggaggaagtntgcncagacggc 78
              ||||||||||||||||| |||||||||||||||||   |||||||||  || |||| | |
Sbjct: 150586 atctacttgaagaagtacgggaggtcgagcacgtag-aggaggaagtaggcccagaggac 150528

                                                                          
Query: 79     gccggatacaccgncgaagaagaagcctccggtgaactgcgaccacccttcggcggtctg 138
              |||||| |  ||| ||||||||||||| ||||||||||  | ||| || |||||||||||
Sbjct: 150527 gccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctg 150468

                                               
Query: 139    gagcttgtcggnctccttcttgcgtccggtgag 171
               |||||||||| |||||||||||| ||||||||
Sbjct: 150467 cagcttgtcggcctccttcttgcggccggtgag 150435



to top

>dbj|AK105154.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-103-F07, full
           insert sequence
          Length = 964

 Score =  123 bits (62), Expect = 2e-25
 Identities = 130/153 (84%), Gaps = 1/153 (0%)
 Strand = Plus / Minus

                                                                       
Query: 19  atctacttgaagaagtatgggaggtcgagcacgtattnggaggaagtntgcncagacggc 78
           ||||||||||||||||| ||||| |||||||||||   |||||||||  || |||| | |
Sbjct: 704 atctacttgaagaagtacgggagatcgagcacgtag-aggaggaagtaggcccagaggac 646

                                                                       
Query: 79  gccggatacaccgncgaagaagaagcctccggtgaactgcgaccacccttcggcggtctg 138
           |||||| |  ||| ||||||||||||| ||||||||||  | ||| || |||||||||||
Sbjct: 645 gccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctg 586

                                            
Query: 139 gagcttgtcggnctccttcttgcgtccggtgag 171
            |||||||||| |||||||||||| ||||||||
Sbjct: 585 cagcttgtcggcctccttcttgcggccggtgag 553



to top

>gb|AY103985.1| Zea mays PCO103239 mRNA sequence
          Length = 1657

 Score = 89.7 bits (45), Expect = 3e-15
 Identities = 116/140 (82%), Gaps = 1/140 (0%)
 Strand = Plus / Minus

                                                                        
Query: 20   tctacttgaagaagtatgggaggtcgagcacgtattnggaggaagtntgcncagacggcg 79
            |||||||||||||||| |||||||||||||||||   |||| ||||  || ||||   ||
Sbjct: 1499 tctacttgaagaagtaggggaggtcgagcacgtag-aggagaaagtaggcccagagcacg 1441

                                                                        
Query: 80   ccggatacaccgncgaagaagaagcctccggtgaactgcgaccacccttcggcggtctgg 139
            ||||| |  ||| |||||||||| || ||||||||||  | ||| || ||||||||||| 
Sbjct: 1440 ccggagatgccgccgaagaagaaccccccggtgaacttggcccagccgtcggcggtctgc 1381

                                
Query: 140  agcttgtcggnctccttctt 159
            |||||||||| |||||||||
Sbjct: 1380 agcttgtcggcctccttctt 1361



to top

>dbj|AB219568.1| Fragaria x ananassa FrPSI mRNA for photosystem I protein, partial
           cds
          Length = 404

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                     
Query: 127 ttcggcggtctggagcttgtcggnctccttcttgcgtccggt 168
           ||||||||| ||||||| ||||| |||||||||||| |||||
Sbjct: 183 ttcggcggtttggagctggtcgggctccttcttgcggccggt 142



to top

>emb|X57903.1|OS08RG10F O.sativa random single-copy DNA fragment 08RG108F
          Length = 162

 Score = 50.1 bits (25), Expect = 0.002
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 20  tctacttgaagaagtatgggaggtcgagc 48
           |||||||||||||||| ||||||||||||
Sbjct: 109 tctacttgaagaagtacgggaggtcgagc 81



to top

>emb|X64445.1|SOPSAL S.oleracea psaL mRNA for subunit XI of photosystem I reaction
           center
          Length = 834

 Score = 44.1 bits (22), Expect = 0.15
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                
Query: 80  ccggatacaccgncgaagaagaagcctccggtgaact 116
           ||||| |||||  |||||||||| |||||||||||||
Sbjct: 676 ccggaaacaccaccgaagaagaaccctccggtgaact 640



to top

>gb|AC117192.3| Mus musculus BAC clone RP23-77A18 from 2, complete sequence
          Length = 161199

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 18     aatctacttgaagaagtatg 37
              ||||||||||||||||||||
Sbjct: 143165 aatctacttgaagaagtatg 143184



to top

>gb|CP000123.1| Mycoplasma capricolum subsp. capricolum ATCC 27343, complete genome
          Length = 1010023

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 15     attaatctacttgaagaagt 34
              ||||||||||||||||||||
Sbjct: 781146 attaatctacttgaagaagt 781165



to top

>emb|AL928659.16| Mouse DNA sequence from clone RP23-271B13 on chromosome 2, complete
              sequence
          Length = 209560

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 18     aatctacttgaagaagtatg 37
              ||||||||||||||||||||
Sbjct: 121761 aatctacttgaagaagtatg 121780



to top

>gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome
          Length = 4607203

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 125    ccttcggcggtctggagct 143
              |||||||||||||||||||
Sbjct: 500847 ccttcggcggtctggagct 500865



to top

>gb|AE014075.1| Escherichia coli CFT073, complete genome
          Length = 5231428

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 125    ccttcggcggtctggagct 143
              |||||||||||||||||||
Sbjct: 646116 ccttcggcggtctggagct 646134



to top

>gb|CP000243.1| Escherichia coli UTI89, complete genome
          Length = 5065741

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 125    ccttcggcggtctggagct 143
              |||||||||||||||||||
Sbjct: 588074 ccttcggcggtctggagct 588092



to top

>gb|U00096.2| Escherichia coli K-12 MG1655, complete genome
          Length = 4639675

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 125    ccttcggcggtctggagct 143
              |||||||||||||||||||
Sbjct: 601843 ccttcggcggtctggagct 601861



to top

>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence
          Length = 2726152

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 127     ttcggcggtctggagcttgtcgg 149
               |||||||| ||||||||||||||
Sbjct: 1174925 ttcggcggactggagcttgtcgg 1174947



to top

>dbj|AP009048.1| Escherichia coli W3110 DNA, complete genome
          Length = 4646332

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 125    ccttcggcggtctggagct 143
              |||||||||||||||||||
Sbjct: 601843 ccttcggcggtctggagct 601861



to top

>gb|U82598.1|ECU82598 Escherichia coli genomic sequence of minutes 9 to 12
          Length = 136742

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 125   ccttcggcggtctggagct 143
             |||||||||||||||||||
Sbjct: 43251 ccttcggcggtctggagct 43269



to top

>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 126     cttcggcggtctggagcttgtcg 148
               ||||| |||||||||||||||||
Sbjct: 7100906 cttcgacggtctggagcttgtcg 7100928



to top

>gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome
          Length = 4599354

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 125    ccttcggcggtctggagct 143
              |||||||||||||||||||
Sbjct: 500650 ccttcggcggtctggagct 500668



to top

>gb|AC167667.4| Culex pipiens quinquefasciatus, clone Culex pipiens
             quinquefasciatus-3940123D9, complete sequence
          Length = 121336

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 73    gacggcgccggatacaccg 91
             |||||||||||||||||||
Sbjct: 16277 gacggcgccggatacaccg 16295



to top

>gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome
          Length = 5528445

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 125    ccttcggcggtctggagct 143
              |||||||||||||||||||
Sbjct: 684931 ccttcggcggtctggagct 684949



to top

>dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome
          Length = 5498450

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 125    ccttcggcggtctggagct 143
              |||||||||||||||||||
Sbjct: 685149 ccttcggcggtctggagct 685167



to top

>gb|CP000034.1| Shigella dysenteriae Sd197, complete genome
          Length = 4369232

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 125    ccttcggcggtctggagct 143
              |||||||||||||||||||
Sbjct: 476090 ccttcggcggtctggagct 476108



to top

>gb|L41842.1|MQSVITE Aedes aegypti vitellogenin (VgA1) gene, complete cds
          Length = 8780

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 22   tacttgaagaagtatggga 40
            |||||||||||||||||||
Sbjct: 7277 tacttgaagaagtatggga 7259



to top

>gb|CP000036.1| Shigella boydii Sb227, complete genome
          Length = 4519823

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 125    ccttcggcggtctggagct 143
              |||||||||||||||||||
Sbjct: 452461 ccttcggcggtctggagct 452479



to top

>gb|CP000038.1| Shigella sonnei Ss046, complete genome
          Length = 4825265

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 125    ccttcggcggtctggagct 143
              |||||||||||||||||||
Sbjct: 562937 ccttcggcggtctggagct 562955



to top

>gb|M58000.1|ECOPHEPA Escherichia coli permease (pheP) gene, complete cds
          Length = 2256

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 125  ccttcggcggtctggagct 143
            |||||||||||||||||||
Sbjct: 1297 ccttcggcggtctggagct 1315



to top

>gb|U02548.1|AAU02548 Aedes aegypti UGALS vitellogenin mRNA, complete cds
          Length = 6504

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 22   tacttgaagaagtatggga 40
            |||||||||||||||||||
Sbjct: 5099 tacttgaagaagtatggga 5081


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 676,200
Number of Sequences: 3902068
Number of extensions: 676200
Number of successful extensions: 33543
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33293
Number of HSP's gapped (non-prelim): 240
length of query: 183
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 161
effective length of database: 17,147,199,772
effective search space: 2760699163292
effective search space used: 2760699163292
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
to top