Clone Information

BLAST Search Result

Clone Name	rbasd22k17
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	Y4837_ARATH (P58223) Probable nucleic acid binding protein At4g1...	89	5e-18
2	PCBP3_MOUSE (P57722) Poly(rC)-binding protein 3 (Alpha-CP3)	44	3e-04
3	PCBP3_HUMAN (P57721) Poly(rC)-binding protein 3 (Alpha-CP3)	44	3e-04
4	FUBP1_MOUSE (Q91WJ8) Far upstream element-binding protein 1 (FUS...	41	0.002
5	PCBP4_HUMAN (P57723) Poly(rC)-binding protein 4 (Alpha-CP4)	39	0.006
6	HNRPK_RAT (P61980) Heterogeneous nuclear ribonucleoprotein K (dC...	38	0.014
7	HNRPK_RABIT (O19049) Heterogeneous nuclear ribonucleoprotein K (...	38	0.014
8	HNRPK_MOUSE (P61979) Heterogeneous nuclear ribonucleoprotein K	38	0.014
9	HNRPK_HUMAN (P61978) Heterogeneous nuclear ribonucleoprotein K (...	38	0.014
10	FUBP1_HUMAN (Q96AE4) Far upstream element-binding protein 1 (FUS...	37	0.024
11	PCBP4_MOUSE (P57724) Poly(rC)-binding protein 4 (Alpha-CP4)	37	0.031
12	PCBP1_RABIT (O19048) Poly(rC)-binding protein 1 (Alpha-CP1) (hnR...	37	0.041
13	PCBP1_MOUSE (P60335) Poly(rC)-binding protein 1 (Alpha-CP1) (hnR...	37	0.041
14	PCBP1_HUMAN (Q15365) Poly(rC)-binding protein 1 (Alpha-CP1) (hnR...	37	0.041
15	NOVA1_RAT (Q80WA4) RNA-binding protein Nova-1 (Neuro-oncological...	36	0.069
16	PCBP2_MOUSE (Q61990) Poly(rC)-binding protein 2 (Alpha-CP2) (Put...	36	0.069
17	PCBP2_HUMAN (Q15366) Poly(rC)-binding protein 2 (Alpha-CP2) (hnR...	36	0.069
18	TDRKH_MOUSE (Q80VL1) Tudor and KH domain-containing protein	36	0.069
19	TDRKH_HUMAN (Q9Y2W6) Tudor and KH domain-containing protein	36	0.069
20	NOVA1_MOUSE (Q9JKN6) RNA-binding protein Nova-1 (Neuro-oncologic...	34	0.20
21	Y760_HELPJ (Q9ZL83) UPF0144 protein jhp_0697	34	0.20
22	NOVA1_HUMAN (P51513) RNA-binding protein Nova-1 (Neuro-oncologic...	34	0.26
23	Y760_HELPY (O25455) UPF0144 protein HP0760	33	0.34
24	NOVA2_HUMAN (Q9UNW9) RNA-binding protein Nova-2 (Neuro-oncologic...	33	0.34
25	FUBP3_HUMAN (Q96I24) Far upstream element-binding protein 3 (FUS...	32	1.0
26	DIG1_CAEEL (Q09165) Mesocentin precursor	32	1.3
27	NU4M_RABIT (O79436) NADH-ubiquinone oxidoreductase chain 4 (EC 1...	31	1.7
28	NUSA_THECE (P29157) NusA protein homolog	30	2.9
29	CP18A_DROME (Q95078) Cytochrome P450 18a1 (EC 1.14.-.-) (CYPXVII...	30	2.9
30	RPOC_PORGI (Q7MX26) DNA-directed RNA polymerase beta' chain (EC ...	30	3.8
31	NU1M_ZAEPI (Q70Y24) NADH-ubiquinone oxidoreductase chain 1 (EC 1...	30	5.0
32	AKAP1_RAT (O88884) A kinase anchor protein 1, mitochondrial prec...	30	5.0
33	AKAP1_MOUSE (O08715) A kinase anchor protein 1, mitochondrial pr...	30	5.0
34	PBP2_YEAST (P38151) PAB1-binding protein 2	30	5.0
35	CBIE_METJA (Q58917) Probable cobalt-precorrin-6Y C(5,15)-methylt...	29	6.5
36	DPO3B_RICPR (Q9ZDB3) DNA polymerase III beta subunit (EC 2.7.7.7)	29	6.5
37	FUBP2_RAT (Q99PF5) Far upstream element-binding protein 2 (FUSE-...	29	6.5
38	AKAP1_HUMAN (Q92667) A kinase anchor protein 1, mitochondrial pr...	29	6.5
39	NU1M_EUPSX (Q70Y26) NADH-ubiquinone oxidoreductase chain 1 (EC 1...	29	8.5

>Y4837_ARATH (P58223) Probable nucleic acid binding protein At4g18375|
          Length = 606

 Score = 89.4 bits (220), Expect = 5e-18
 Identities = 50/102 (49%), Positives = 67/102 (65%), Gaps = 2/102 (1%)
 Frame = -1

Query: 507 YHGYSPRQAVDDGFGLRSXYTSKPYGRRVPD--MEMFIPSSGLSKVMGKHGTNLDNIRKI 334
           +HGY    A D+  G    Y+   YGR      +E+ IP+  +SKVMGK G NL+NIR+I
Sbjct: 508 FHGYGSFPAGDNVLGSTGPYS---YGRLPSSSALEILIPAHAMSKVMGKGGGNLENIRRI 564

Query: 333 SGADIEIIESKSSRHEHVAYIYGTPEQRQSAENLIKAFIMST 208
           SGA IEI  SK+S  +H+A + GT EQ + AENL++AF+MST
Sbjct: 565 SGAMIEISASKTSHGDHIALLSGTLEQMRCAENLVQAFVMST 606



 Score = 32.0 bits (71), Expect = 1.0
 Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
 Frame = -1

Query: 417 DMEMFIPSSGLSKVMGKHGTNLDNIRKISGADIEIIESKSS--------RHEHVAYIYGT 262
           +  + +P S  S ++GK G N+  IR+ + A ++++    S         +++V  I G 
Sbjct: 140 ECRLLVPFSQSSSLIGKAGENIKRIRRRTRASVKVVSKDVSDPSHVCAMEYDNVVVISGE 199

Query: 261 PEQRQSAENLIKAFI 217
           PE  + A   + A +
Sbjct: 200 PESVKQALFAVSAIM 214



 Score = 29.6 bits (65), Expect = 5.0
 Identities = 12/38 (31%), Positives = 25/38 (65%)
 Frame = -1

Query: 411 EMFIPSSGLSKVMGKHGTNLDNIRKISGADIEIIESKS 298
           ++  P   + +V+GK G+ +  IR+ SG+ IE+ +S++
Sbjct: 315 KVLCPLCNIMRVIGKGGSTIKRIREASGSCIEVNDSRT 352

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>PCBP3_MOUSE (P57722) Poly(rC)-binding protein 3 (Alpha-CP3)|
          Length = 339

 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 23/67 (34%), Positives = 37/67 (55%)
 Frame = -1

Query: 411 EMFIPSSGLSKVMGKHGTNLDNIRKISGADIEIIESKSSRHEHVAYIYGTPEQRQSAENL 232
           E+ IP+  +  ++G+ GT ++ IR++SGA I+I  +     E    I GTP     A+ L
Sbjct: 265 ELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYL 324

Query: 231 IKAFIMS 211
           I A + S
Sbjct: 325 INARLTS 331



 Score = 31.6 bits (70), Expect = 1.3
 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = -1

Query: 447 TSKPYGRRVPDMEMFIPSSGLSKVMGKHGTNLDNIRKISGADIEII-ESKSSRHEHVAYI 271
           TSKP       + + +P+S    ++GK G+ +  IR+ +GA +++  +   +  E    I
Sbjct: 93  TSKP----PVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTI 148

Query: 270 YGTPE 256
            GTP+
Sbjct: 149 SGTPD 153

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>PCBP3_HUMAN (P57721) Poly(rC)-binding protein 3 (Alpha-CP3)|
          Length = 339

 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 23/67 (34%), Positives = 37/67 (55%)
 Frame = -1

Query: 411 EMFIPSSGLSKVMGKHGTNLDNIRKISGADIEIIESKSSRHEHVAYIYGTPEQRQSAENL 232
           E+ IP+  +  ++G+ GT ++ IR++SGA I+I  +     E    I GTP     A+ L
Sbjct: 265 ELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYL 324

Query: 231 IKAFIMS 211
           I A + S
Sbjct: 325 INARLTS 331



 Score = 31.6 bits (70), Expect = 1.3
 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = -1

Query: 447 TSKPYGRRVPDMEMFIPSSGLSKVMGKHGTNLDNIRKISGADIEII-ESKSSRHEHVAYI 271
           TSKP       + + +P+S    ++GK G+ +  IR+ +GA +++  +   +  E    I
Sbjct: 93  TSKP----PVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTI 148

Query: 270 YGTPE 256
            GTP+
Sbjct: 149 SGTPD 153

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>FUBP1_MOUSE (Q91WJ8) Far upstream element-binding protein 1 (FUSE-binding|
           protein 1) (FBP)
          Length = 651

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 23/87 (26%), Positives = 39/87 (44%)
 Frame = -1

Query: 477 DDGFGLRSXYTSKPYGRRVPDMEMFIPSSGLSKVMGKHGTNLDNIRKISGADIEIIESKS 298
           +D FG +     +   R V   E  +P   +  ++G+ G  +  I++ SG  I+I     
Sbjct: 78  NDSFGAQLPPMHQQQSRSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSG 137

Query: 297 SRHEHVAYIYGTPEQRQSAENLIKAFI 217
              E    + GTPE  QSA+ L+   +
Sbjct: 138 GLPERSCMLTGTPESVQSAKRLLDQIV 164



 Score = 30.8 bits (68), Expect = 2.2
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
 Frame = -1

Query: 417 DMEMFIPSSGLSKVMGKHGTNLDNIRKISGADIEIIES---KSSRHEHVAYIYGTPEQRQ 247
           +    +P+     ++GK G  + +I + SGA IE+  S    +  +  +  I GTP+Q  
Sbjct: 374 EFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRSPPPNADPNMKLFTIRGTPQQID 433

Query: 246 SAENLIK 226
            A  LI+
Sbjct: 434 YARQLIE 440

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>PCBP4_HUMAN (P57723) Poly(rC)-binding protein 4 (Alpha-CP4)|
          Length = 403

 Score = 39.3 bits (90), Expect = 0.006
 Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
 Frame = -1

Query: 432 GRRVPDMEMFIPSSGLSKVMGKHGTNLDNIRKISGADIEIIESKSSRHEHVAYIYGTPEQ 253
           G +    E  +P+  +  V+G+ G+ +  IR++SGA I+I        E    I G+P  
Sbjct: 238 GTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVS 297

Query: 252 RQSAENLIKAFI---MST*GGSRCS 187
              A+ LI A +    ST GG+  S
Sbjct: 298 IALAQYLITACLETAKSTSGGTPSS 322



 Score = 30.8 bits (68), Expect = 2.2
 Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = -1

Query: 414 MEMFIPSSGLSKVMGKHGTNLDNIRKISGADIEII-ESKSSRHEHVAYIYGTPE 256
           + + IP+S    ++GK GT +  IR+ +GA +++  +   +  E    + G P+
Sbjct: 104 LRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPD 157

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>HNRPK_RAT (P61980) Heterogeneous nuclear ribonucleoprotein K (dC|
           stretch-binding protein) (CSBP)
          Length = 463

 Score = 38.1 bits (87), Expect = 0.014
 Identities = 20/62 (32%), Positives = 33/62 (53%)
 Frame = -1

Query: 411 EMFIPSSGLSKVMGKHGTNLDNIRKISGADIEIIESKSSRHEHVAYIYGTPEQRQSAENL 232
           ++ IP      ++GK G  +  IR  SGA I+I E      + +  I GT +Q Q+A+ L
Sbjct: 391 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYL 450

Query: 231 IK 226
           ++
Sbjct: 451 LQ 452

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>HNRPK_RABIT (O19049) Heterogeneous nuclear ribonucleoprotein K (hnRNP K)|
          Length = 463

 Score = 38.1 bits (87), Expect = 0.014
 Identities = 20/62 (32%), Positives = 33/62 (53%)
 Frame = -1

Query: 411 EMFIPSSGLSKVMGKHGTNLDNIRKISGADIEIIESKSSRHEHVAYIYGTPEQRQSAENL 232
           ++ IP      ++GK G  +  IR  SGA I+I E      + +  I GT +Q Q+A+ L
Sbjct: 391 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYL 450

Query: 231 IK 226
           ++
Sbjct: 451 LQ 452

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>HNRPK_MOUSE (P61979) Heterogeneous nuclear ribonucleoprotein K|
          Length = 463

 Score = 38.1 bits (87), Expect = 0.014
 Identities = 20/62 (32%), Positives = 33/62 (53%)
 Frame = -1

Query: 411 EMFIPSSGLSKVMGKHGTNLDNIRKISGADIEIIESKSSRHEHVAYIYGTPEQRQSAENL 232
           ++ IP      ++GK G  +  IR  SGA I+I E      + +  I GT +Q Q+A+ L
Sbjct: 391 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYL 450

Query: 231 IK 226
           ++
Sbjct: 451 LQ 452

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>HNRPK_HUMAN (P61978) Heterogeneous nuclear ribonucleoprotein K (hnRNP K)|
           (Transformation up-regulated nuclear protein) (TUNP)
          Length = 463

 Score = 38.1 bits (87), Expect = 0.014
 Identities = 20/62 (32%), Positives = 33/62 (53%)
 Frame = -1

Query: 411 EMFIPSSGLSKVMGKHGTNLDNIRKISGADIEIIESKSSRHEHVAYIYGTPEQRQSAENL 232
           ++ IP      ++GK G  +  IR  SGA I+I E      + +  I GT +Q Q+A+ L
Sbjct: 391 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYL 450

Query: 231 IK 226
           ++
Sbjct: 451 LQ 452

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>FUBP1_HUMAN (Q96AE4) Far upstream element-binding protein 1 (FUSE-binding|
           protein 1) (FBP) (DNA helicase V) (HDH V)
          Length = 643

 Score = 37.4 bits (85), Expect = 0.024
 Identities = 20/71 (28%), Positives = 33/71 (46%)
 Frame = -1

Query: 429 RRVPDMEMFIPSSGLSKVMGKHGTNLDNIRKISGADIEIIESKSSRHEHVAYIYGTPEQR 250
           R V   E  +P   +  ++G+ G  +  I++ SG  I+I        E    + GTPE  
Sbjct: 97  RSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESV 156

Query: 249 QSAENLIKAFI 217
           QSA+ L+   +
Sbjct: 157 QSAKRLLDQIV 167



 Score = 29.6 bits (65), Expect = 5.0
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
 Frame = -1

Query: 417 DMEMFIPSSGLSKVMGKHGTNLDNIRKISGADIEIIES---KSSRHEHVAYIYGTPEQRQ 247
           +    +P+     ++GK G  + +I + SGA IE+  +    +  +  +  I GTP+Q  
Sbjct: 377 EFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQID 436

Query: 246 SAENLIK 226
            A  LI+
Sbjct: 437 YARQLIE 443

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>PCBP4_MOUSE (P57724) Poly(rC)-binding protein 4 (Alpha-CP4)|
          Length = 403

 Score = 37.0 bits (84), Expect = 0.031
 Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
 Frame = -1

Query: 411 EMFIPSSGLSKVMGKHGTNLDNIRKISGADIEIIESKSSRHEHVAYIYGTPEQRQSAENL 232
           E  +P+  +  V+G+ G+ +  IR++SGA I+I        E    I G+P     A+ L
Sbjct: 245 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYL 304

Query: 231 IKAFI---MST*GGS 196
           I A +    ST GG+
Sbjct: 305 ITACLETAKSTSGGT 319



 Score = 30.8 bits (68), Expect = 2.2
 Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = -1

Query: 414 MEMFIPSSGLSKVMGKHGTNLDNIRKISGADIEII-ESKSSRHEHVAYIYGTPE 256
           + + IP+S    ++GK GT +  IR+ +GA +++  +   +  E    + G P+
Sbjct: 104 LRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPD 157

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>PCBP1_RABIT (O19048) Poly(rC)-binding protein 1 (Alpha-CP1) (hnRNP-E1)|
          Length = 356

 Score = 36.6 bits (83), Expect = 0.041
 Identities = 21/70 (30%), Positives = 36/70 (51%)
 Frame = -1

Query: 411 EMFIPSSGLSKVMGKHGTNLDNIRKISGADIEIIESKSSRHEHVAYIYGTPEQRQSAENL 232
           E+ IP++ +  ++G+ G N++ IR++SGA I+I             I G+      A+ L
Sbjct: 283 ELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYL 342

Query: 231 IKAFIMST*G 202
           I A + S  G
Sbjct: 343 INARLSSEKG 352

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>PCBP1_MOUSE (P60335) Poly(rC)-binding protein 1 (Alpha-CP1) (hnRNP-E1)|
          Length = 356

 Score = 36.6 bits (83), Expect = 0.041
 Identities = 21/70 (30%), Positives = 36/70 (51%)
 Frame = -1

Query: 411 EMFIPSSGLSKVMGKHGTNLDNIRKISGADIEIIESKSSRHEHVAYIYGTPEQRQSAENL 232
           E+ IP++ +  ++G+ G N++ IR++SGA I+I             I G+      A+ L
Sbjct: 283 ELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYL 342

Query: 231 IKAFIMST*G 202
           I A + S  G
Sbjct: 343 INARLSSEKG 352

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>PCBP1_HUMAN (Q15365) Poly(rC)-binding protein 1 (Alpha-CP1) (hnRNP-E1) (Nucleic|
           acid-binding protein SUB2.3)
          Length = 356

 Score = 36.6 bits (83), Expect = 0.041
 Identities = 21/70 (30%), Positives = 36/70 (51%)
 Frame = -1

Query: 411 EMFIPSSGLSKVMGKHGTNLDNIRKISGADIEIIESKSSRHEHVAYIYGTPEQRQSAENL 232
           E+ IP++ +  ++G+ G N++ IR++SGA I+I             I G+      A+ L
Sbjct: 283 ELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYL 342

Query: 231 IKAFIMST*G 202
           I A + S  G
Sbjct: 343 INARLSSEKG 352

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>NOVA1_RAT (Q80WA4) RNA-binding protein Nova-1 (Neuro-oncological ventral|
           antigen 1) (Fragment)
          Length = 474

 Score = 35.8 bits (81), Expect = 0.069
 Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
 Frame = -1

Query: 426 RVPDMEMFIPSSGLSKVMGKHGTNLDNIRKISGADIEIIESKS--SRHEHVAYIYGTPEQ 253
           R+  +++ +P+S    ++GK G  +  I + SGA +++ +     +  E V  + G PEQ
Sbjct: 145 RIKQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQ 204

Query: 252 RQSAENLI 229
            + A  LI
Sbjct: 205 NRKAVELI 212



 Score = 32.7 bits (73), Expect = 0.59
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
 Frame = -1

Query: 414 MEMFIPSSGLSKVMGKHGTNLDNIRKISGADIEIIESKS---SRHEHVAYIYGTPEQRQS 244
           +++ IPS     ++GK G  +  ++K +GA I++ +SK       E V  I GT E    
Sbjct: 51  LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIE---- 106

Query: 243 AENLIKAFI 217
           A N +  FI
Sbjct: 107 ALNAVHGFI 115

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>PCBP2_MOUSE (Q61990) Poly(rC)-binding protein 2 (Alpha-CP2) (Putative|
           heterogeneous nuclear ribonucleoprotein X) (hnRNP X)
           (CTBP) (CBP)
          Length = 362

 Score = 35.8 bits (81), Expect = 0.069
 Identities = 20/71 (28%), Positives = 35/71 (49%)
 Frame = -1

Query: 411 EMFIPSSGLSKVMGKHGTNLDNIRKISGADIEIIESKSSRHEHVAYIYGTPEQRQSAENL 232
           E+ IP+  +  ++G+ G  ++ IR++SGA I+I        +    I G+      A+ L
Sbjct: 288 ELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYL 347

Query: 231 IKAFIMST*GG 199
           I   + S  GG
Sbjct: 348 INVRLSSETGG 358



 Score = 28.9 bits (63), Expect = 8.5
 Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
 Frame = -1

Query: 462 LRSXYTSKPYGRRVP-DMEMFIPSSGLSKVMGKHGTNLDNIRKISGADIEII-ESKSSRH 289
           + S  T+     R P  + + +P+S    ++GK G  +  IR+ +GA +++  +   +  
Sbjct: 83  ISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNST 142

Query: 288 EHVAYIYGTPE 256
           E    I G P+
Sbjct: 143 ERAITIAGIPQ 153

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>PCBP2_HUMAN (Q15366) Poly(rC)-binding protein 2 (Alpha-CP2) (hnRNP-E2)|
          Length = 365

 Score = 35.8 bits (81), Expect = 0.069
 Identities = 20/71 (28%), Positives = 35/71 (49%)
 Frame = -1

Query: 411 EMFIPSSGLSKVMGKHGTNLDNIRKISGADIEIIESKSSRHEHVAYIYGTPEQRQSAENL 232
           E+ IP+  +  ++G+ G  ++ IR++SGA I+I        +    I G+      A+ L
Sbjct: 291 ELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYL 350

Query: 231 IKAFIMST*GG 199
           I   + S  GG
Sbjct: 351 INVRLSSETGG 361



 Score = 28.9 bits (63), Expect = 8.5
 Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
 Frame = -1

Query: 462 LRSXYTSKPYGRRVP-DMEMFIPSSGLSKVMGKHGTNLDNIRKISGADIEII-ESKSSRH 289
           + S  T+     R P  + + +P+S    ++GK G  +  IR+ +GA +++  +   +  
Sbjct: 83  ISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNST 142

Query: 288 EHVAYIYGTPE 256
           E    I G P+
Sbjct: 143 ERAITIAGIPQ 153

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>TDRKH_MOUSE (Q80VL1) Tudor and KH domain-containing protein|
          Length = 560

 Score = 35.8 bits (81), Expect = 0.069
 Identities = 17/55 (30%), Positives = 32/55 (58%)
 Frame = -1

Query: 417 DMEMFIPSSGLSKVMGKHGTNLDNIRKISGADIEIIESKSSRHEHVAYIYGTPEQ 253
           ++EM +P   +  ++G+ G N+  +RK +GA I+ ++++    E V  I G P Q
Sbjct: 54  EIEMRVPQEAVKLIIGRQGANIKQLRKQTGARID-VDTEDVGDERVLLISGFPVQ 107

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>TDRKH_HUMAN (Q9Y2W6) Tudor and KH domain-containing protein|
          Length = 606

 Score = 35.8 bits (81), Expect = 0.069
 Identities = 17/55 (30%), Positives = 32/55 (58%)
 Frame = -1

Query: 417 DMEMFIPSSGLSKVMGKHGTNLDNIRKISGADIEIIESKSSRHEHVAYIYGTPEQ 253
           ++EM +P   +  ++G+ G N+  +RK +GA I+ ++++    E V  I G P Q
Sbjct: 54  EIEMRVPQEAVKLIIGRQGANIKQLRKQTGARID-VDTEDVGDERVLLISGFPVQ 107

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>NOVA1_MOUSE (Q9JKN6) RNA-binding protein Nova-1 (Neuro-oncological ventral|
           antigen 1) (Ventral neuron-specific protein 1)
           (Fragment)
          Length = 493

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
 Frame = -1

Query: 426 RVPDMEMFIPSSGLSKVMGKHGTNLDNIRKISGADIEIIESKS--SRHEHVAYIYGTPEQ 253
           R   +++ +P+S    ++GK G  +  I + SGA +++ +     +  E V  + G PEQ
Sbjct: 156 RANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQ 215

Query: 252 RQSAENLI 229
            + A  LI
Sbjct: 216 NRKAVELI 223



 Score = 32.7 bits (73), Expect = 0.59
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
 Frame = -1

Query: 414 MEMFIPSSGLSKVMGKHGTNLDNIRKISGADIEIIESKS---SRHEHVAYIYGTPEQRQS 244
           +++ IPS     ++GK G  +  ++K +GA I++ +SK       E V  I GT E    
Sbjct: 38  LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIE---- 93

Query: 243 AENLIKAFI 217
           A N +  FI
Sbjct: 94  ALNAVHGFI 102

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>Y760_HELPJ (Q9ZL83) UPF0144 protein jhp_0697|
          Length = 529

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 22/60 (36%), Positives = 30/60 (50%)
 Frame = -1

Query: 396 SSGLSKVMGKHGTNLDNIRKISGADIEIIESKSSRHEHVAYIYGTPEQRQSAENLIKAFI 217
           S  + +V+GK G N++  +KISG DIE  E  S        IY    +R+ A   IK  I
Sbjct: 225 SDYVGRVIGKDGKNIEAFKKISGVDIEFSEDSSELCLSSFNIY----RREVASETIKILI 280

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>NOVA1_HUMAN (P51513) RNA-binding protein Nova-1 (Neuro-oncological ventral|
           antigen 1) (Onconeural ventral antigen 1)
           (Paraneoplastic Ri antigen) (Ventral neuron-specific
           protein 1)
          Length = 510

 Score = 33.9 bits (76), Expect = 0.26
 Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
 Frame = -1

Query: 426 RVPDMEMFIPSSGLSKVMGKHGTNLDNIRKISGADIEIIESKS--SRHEHVAYIYGTPEQ 253
           R   +++ +P+S    ++GK G  +  + + SGA +++ +     +  E V  + G PEQ
Sbjct: 173 RANQVKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQ 232

Query: 252 RQSAENLI 229
            + A  LI
Sbjct: 233 NRKAVELI 240



 Score = 30.8 bits (68), Expect = 2.2
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
 Frame = -1

Query: 414 MEMFIPSSGLSKVMGKHGTNLDNIRKISGADIEIIESKSSRH------EHVAYIYGTPEQ 253
           +++ IPS     ++GK G  +  ++K +GA I++ +   S+       E V  I GT E 
Sbjct: 52  LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKLSKSKDFYPGTTERVCLIQGTVE- 110

Query: 252 RQSAENLIKAFI 217
              A N +  FI
Sbjct: 111 ---ALNAVHGFI 119

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>Y760_HELPY (O25455) UPF0144 protein HP0760|
          Length = 529

 Score = 33.5 bits (75), Expect = 0.34
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -1

Query: 396 SSGLSKVMGKHGTNLDNIRKISGADIEIIESKS 298
           S  + +V+GK G N++  +K+SG DIE  E  S
Sbjct: 225 SDYIGRVIGKDGKNIEAFKKVSGVDIEFSEDSS 257

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>NOVA2_HUMAN (Q9UNW9) RNA-binding protein Nova-2 (Neuro-oncological ventral|
           antigen 2) (Astrocytic NOVA1-like RNA-binding protein)
          Length = 492

 Score = 33.5 bits (75), Expect = 0.34
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
 Frame = -1

Query: 414 MEMFIPSSGLSKVMGKHGTNLDNIRKISGADIEIIESKS---SRHEHVAYIYGTPEQRQS 244
           +++ IPS     ++GK G  +  ++K +GA I++ +SK       E V  + GT E    
Sbjct: 35  LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAE---- 90

Query: 243 AENLIKAFI 217
           A N + +FI
Sbjct: 91  ALNAVHSFI 99



 Score = 31.6 bits (70), Expect = 1.3
 Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
 Frame = -1

Query: 426 RVPDMEMFIPSSGLSKVMGKHGTNLDNIRKISGADIEIIESKS--SRHEHVAYIYGTPEQ 253
           R    ++ +P+S    ++GK G  +  + + SGA +++ +     +  E V  + G PEQ
Sbjct: 129 RAKQAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVVTVSGEPEQ 188

Query: 252 RQSAENLIKAFIMST*GGSRC 190
              A + I   +      S C
Sbjct: 189 VHKAVSAIVQKVQEDPQSSSC 209

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>FUBP3_HUMAN (Q96I24) Far upstream element-binding protein 3 (FUSE-binding|
           protein 3)
          Length = 572

 Score = 32.0 bits (71), Expect = 1.0
 Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 12/94 (12%)
 Frame = -1

Query: 474 DGFGLRSXYTSKPYGRR---------VPDMEMFIPSSGLSKVMGKHGTNLDNIRKISGAD 322
           DGFG  +    +  GR          V ++   +P+     V+GK G N+ +I + SGA 
Sbjct: 328 DGFGGLAAARGRGRGRGDWSVGAPGGVQEITYTVPADKCGLVIGKGGENIKSINQQSGAH 387

Query: 321 IEIIES---KSSRHEHVAYIYGTPEQRQSAENLI 229
           +E+  +    S  +     I G P+Q + A  LI
Sbjct: 388 VELQRNPPPNSDPNLRRFTIRGVPQQIEVARQLI 421

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>DIG1_CAEEL (Q09165) Mesocentin precursor|
          Length = 13100

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
 Frame = +2

Query: 215 IMKALIKFSADCLCSGVPYM*ATCSCRDDFDSIISMSAPEIFLILSKFVPCFPITFERPL 394
           I K+L +  + C C+G+      CSC D+    + ++ P          P   I  + P 
Sbjct: 266 IPKSLCRSLSGCTCNGITETQFACSCGDNKQKCLLIAGP----------PRIYIEPQGPY 315

Query: 395 E---GINISISGTRLPYGF-EVYXERN 463
           E   G NI+IS T + Y F ++Y  +N
Sbjct: 316 EVAPGGNINISCTSVAYPFPDIYWFKN 342

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>NU4M_RABIT (O79436) NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 4)
          Length = 459

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = -3

Query: 196 PL*FERIYVDTSVSSIGLPSLNFLRSKIVFSILPTLQ*TSCLSLYLPQIPSHGLLVW 26
           PL    IY+  S+ S+    L  +   I  S   +L   +C+  +L ++P +GL +W
Sbjct: 159 PLLVALIYLQNSMGSLNFLLLQLMNKSITTSWSNSLMWLACMMAFLVKMPLYGLHLW 215

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>NUSA_THECE (P29157) NusA protein homolog|
          Length = 145

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -1

Query: 402 IPSSGLSKVMGKHGTNLDNIRKISGADIEIIESKSSRHEHVAYIY 268
           I    +   +GK G N+  ++ + G +IE+IE   +  E +  IY
Sbjct: 40  IKKGEMGLALGKKGANVKRVQNMIGKEIEVIEHSENPEEFLRNIY 84

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>CP18A_DROME (Q95078) Cytochrome P450 18a1 (EC 1.14.-.-) (CYPXVIIIA1)|
          Length = 538

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +2

Query: 332 EIFLILSKFVPCFPITFE--RPLEGINISISGTRLPYGFEVYXERNP 466
           E+FL  + F+ CF I     +PL  +  ++  T  P  F+V  +R P
Sbjct: 475 ELFLFFASFMHCFDIALPEGQPLPSLKGNVGATITPESFKVCLKRRP 521

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>RPOC_PORGI (Q7MX26) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1433

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 14/54 (25%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = -2

Query: 392 VAFQK*WESMVQTWTILE-RFQELTLKLLNQNHLGMNMLLTYMAPLSRGSRQRI 234
           + F + +  ++ TWT +  R   + +K L+ ++ G N +   M   +RGS+++I
Sbjct: 679 ITFNERYNQIIDTWTHINGRLSNVLIKQLSSDNDGFNSVFMMMDSGARGSKEQI 732

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>NU1M_ZAEPI (Q70Y24) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 1)
          Length = 318

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -3

Query: 121 SKIVFSILPTLQ*TSCLSLYLPQIPSHGLL 32
           SK++F++ PTL  T  LSL++P    H L+
Sbjct: 67  SKLMFTLAPTLAFTLALSLWIPMPMPHSLI 96

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>AKAP1_RAT (O88884) A kinase anchor protein 1, mitochondrial precursor|
           (Protein kinase A-anchoring protein 1) (PRKA1) (A-kinase
           anchor protein 121 kDa) (AKAP 121) (Dual specificity
           A-kinase-anchoring protein 1) (D-AKAP-1) (Spermatid
           A-kinase anchor protei
          Length = 854

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 16/61 (26%), Positives = 32/61 (52%)
 Frame = -1

Query: 411 EMFIPSSGLSKVMGKHGTNLDNIRKISGADIEIIESKSSRHEHVAYIYGTPEQRQSAENL 232
           E+ +P   + +++GK G  +  +++ SGA I I     +++  + +I G+      A NL
Sbjct: 562 EIEVPKHLVGRLIGKQGRYVSFLKQTSGAKIYISTLPYTQNIQICHIEGSQHHVDKALNL 621

Query: 231 I 229
           I
Sbjct: 622 I 622

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>AKAP1_MOUSE (O08715) A kinase anchor protein 1, mitochondrial precursor|
           (Protein kinase A-anchoring protein 1) (PRKA1)
           (Dual-specificity A-kinase-anchoring protein 1)
           (D-AKAP-1) (Spermatid A-kinase anchor protein) (S-AKAP)
          Length = 857

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 16/61 (26%), Positives = 32/61 (52%)
 Frame = -1

Query: 411 EMFIPSSGLSKVMGKHGTNLDNIRKISGADIEIIESKSSRHEHVAYIYGTPEQRQSAENL 232
           E+ +P   + +++GK G  +  +++ SGA I I     +++  + +I G+      A NL
Sbjct: 565 EIEVPKHLVGRLIGKQGRYVSFLKQTSGAKIYISTLPYTQNIQICHIEGSQHHVDKALNL 624

Query: 231 I 229
           I
Sbjct: 625 I 625

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>PBP2_YEAST (P38151) PAB1-binding protein 2|
          Length = 413

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 18/61 (29%), Positives = 31/61 (50%)
 Frame = -1

Query: 411 EMFIPSSGLSKVMGKHGTNLDNIRKISGADIEIIESKSSRHEHVAYIYGTPEQRQSAENL 232
           E+FI    +  V+GK G +++++++ +G  I I +      E    I GT    Q+A  L
Sbjct: 334 EIFIDEKFVGNVIGKDGKHINSVKESTGCSIIIQDPVEGSSERRLTIRGTFMASQAAIML 393

Query: 231 I 229
           I
Sbjct: 394 I 394

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>CBIE_METJA (Q58917) Probable cobalt-precorrin-6Y C(5,15)-methyltransferase|
           [decarboxylating] (EC 2.1.1.-) (Cobalt-precorrin-6
           methyltransferase) (Cobalt-precorrin-6Y methylase)
          Length = 211

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
 Frame = -1

Query: 393 SGLSKVMGKHGTNLDNIRKISG-ADIEIIESK---SSRHEHVAYIYGTPEQRQSAENLIK 226
           SGL K + K G   ++I  ISG + I+I  +K   S    ++  ++G  E R+   NLIK
Sbjct: 82  SGLLKTLLKIGAKKEDIEAISGISSIQIAAAKLKISWEDYYIITLHGKEENRKKLLNLIK 141

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>DPO3B_RICPR (Q9ZDB3) DNA polymerase III beta subunit (EC 2.7.7.7)|
          Length = 381

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = -1

Query: 420 PDMEMFIPSSGLSKVMGKHGTNLDNIRKISGADIEIIES-KSSRHEHVAYIYGTPEQRQS 244
           PD   FIP S +SK++       D+I +I+   +E   + K S    +  I    E R +
Sbjct: 246 PDYSAFIPKSSVSKLVINRKIFADSIERIAIITVEKFRAVKLSLSRKILEISAVGEARGT 305

Query: 243 AENLIKA 223
           A+ +I A
Sbjct: 306 AKEIITA 312

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>FUBP2_RAT (Q99PF5) Far upstream element-binding protein 2 (FUSE-binding|
           protein 2) (KH type splicing regulatory protein) (KSRP)
           (MAP2 RNA trans-acting protein 1) (MARTA1)
          Length = 721

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
 Frame = -1

Query: 417 DMEMFIPSSGLSKVMGKHGTNLDNIRKISGADIEI---IESKSSRHEHVAYIYGTPEQRQ 247
           +M   IP+     V+G+ G N+  I + +GA +EI   +      +  +  I G+P+Q  
Sbjct: 427 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFVIRGSPQQID 486

Query: 246 SAENLIK 226
            A+ LI+
Sbjct: 487 HAKQLIE 493

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>AKAP1_HUMAN (Q92667) A kinase anchor protein 1, mitochondrial precursor|
           (Protein kinase A-anchoring protein 1) (PRKA1) (A-kinase
           anchor protein 149 kDa) (AKAP 149) (Dual specificity
           A-kinase-anchoring protein 1) (D-AKAP-1) (Spermatid
           A-kinase anchor prot
          Length = 903

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 16/61 (26%), Positives = 31/61 (50%)
 Frame = -1

Query: 411 EMFIPSSGLSKVMGKHGTNLDNIRKISGADIEIIESKSSRHEHVAYIYGTPEQRQSAENL 232
           E+ +P   + +++GK G  +  +++ SGA I I     ++   + +I G+      A NL
Sbjct: 611 EIEVPKHLVGRLIGKQGRYVSFLKQTSGAKIYISTLPYTQSVQICHIEGSQHHVDKALNL 670

Query: 231 I 229
           I
Sbjct: 671 I 671

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>NU1M_EUPSX (Q70Y26) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 1)
          Length = 318

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -3

Query: 121 SKIVFSILPTLQ*TSCLSLYLPQIPSHGLL 32
           SK++F++ PTL  T  LSL++P    H L+
Sbjct: 67  SKLMFTLAPTLAFTLALSLWIPMPMPHPLI 96


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,828,068
Number of Sequences: 219361
Number of extensions: 1471010
Number of successful extensions: 4182
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 4075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4182
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3754426130
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result